@article {9592,
	title = {Demography of endangered juvenile green turtles in face of environmental changes: 10 years of capture-mark-recapture efforts in Martinique},
	journal = {Biological Conservation},
	volume = {291},
	year = {2024},
	month = {Jan-03-2024},
	pages = {110471},
	issn = {00063207},
	doi = {10.1016/j.biocon.2024.110471},
	url = {https://authors.elsevier.com/c/1icDh1R~eWZv6},
	author = {Lelong, Pierre and Besnard, Aur{\'e}lien and Girondot, Marc and Habold, Caroline and Priam, Fabienne and Giraudeau, Mathieu and Le Loc{\textquoteright}h, Guillaume and Le Loc{\textquoteright}h, Aur{\'e}lie and Fournier, Pascal and Fournier-Chambrillon, Christine and Bustamante, Paco and Dupont, Sophie M. and Vincze, Orsolya and Gros-Desormeaux, Jean-Rapha{\"e}l and Martin, Jordan and Bourgeois, Ouv{\'e}a and Lepori, Muriel and R{\'e}gis, Sidney and Lecerf, Nicolas and Lefebvre, Fabien and Aubert, Nathalie and Frouin, C{\'e}dric and Flora, Fr{\'e}d{\'e}ric and Pimentel, Esteban and Pimentel, Manon and Siegwalt, Flora and Jeantet, Lor{\`e}ne and Chambault, Philippine and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and Arthus, Mosiah and Louis-Jean, Laurent and Brador, Aude and Giannasi, Paul and Etienne, Denis and Lecerf, Natha{\"e}l and Chevallier, Pascale and Chevallier, Tao and Meslier, St{\'e}phane and Landreau, Anthony and Maceno, Myriane and Larcher, Eug{\`e}ne and Le Maho, Yvon and Chevallier, Damien}
}
@article {9583,
	title = {First Record of Kemp{\textquoteright}s Ridley Sea Turtle, Lepidochelys kempii (Garman, 1880), in the Waters of Martinique Island (Lesser Antilles)},
	journal = {Animals},
	volume = {14},
	year = {2024},
	month = {Jan-02-2024},
	pages = {596},
	doi = {10.3390/ani14040596},
	url = {https://www.mdpi.com/2076-2615/14/4/596https://www.mdpi.com/2076-2615/14/4/596/pdf},
	author = {Chevallier, Damien and Fretey, Jacques and Lescure, Jean and Girondot, Marc}
}
@article {9610,
	title = {Freshwater and limno-terrestrial meiofauna of the Massane Forest Reserve in the Eastern French Pyrenees},
	journal = {Biogeographia {\textendash} The Journal of Integrative Biogeography},
	volume = {39},
	year = {2024},
	month = {Mar-02-2026},
	issn = {1594-7629},
	doi = {10.21426/B639162226},
	url = {https://escholarship.org/uc/item/36v7z1xj},
	author = {Majdi, Nabil and Araujo, Thiago Quintao and Bekkouche, Nicolas and Fontaneto, Diego and Garrigue, Joseph and Larrieu, Laurent and Kamburska, Lyudmila and Kieneke, Alexander and Minowa, Axell Kou and Laumer, Christopher and Sabatino, Raffaella and Sorel, Diane and Stec, Daniel and Traunspurger, Walter}
}
@article {9642,
	title = {Hydro-morphological features and functional structure of fish assemblages mediate species isotopic niches in estuaries},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {299},
	year = {2024},
	month = {Jan-04-2024},
	pages = {108686},
	abstract = {Despite the popularity of stable isotope analysis (Carbon and Nitrogen), the drivers of species isotopic niches and their consequences on food web functioning remained poorly described, especially in estuaries. Here, we hypothesised that species niche characteristics are influenced by ecosystem hydro-morphological features and the functional structure of fish assemblages. The trophic niches of four fish species (Dicentrarchus labrax, Pomatoschistus minutus, Sprattus\&nbsp;and\&nbsp;Platichthys flesus) and overlap between them were compared during two consecutive autumns in eight estuarine ecosystems of the northeast Atlantic Ocean. Our findings demonstrated a relative steadiness of trophic positions of fish in estuaries, despite a high level of interspecific variability. The seabass generally occupied the higher trophic position, followed by the sand goby, while the flounder and sprat were at the lowest position in the food web. Species isotopic niches and overlap were mediated by some estuarine features, including estuary size and intertidal extent, but also by biotic interactions at the intra- and inter-specific levels, as reflected by the influence of fish abundance and functional diversity metrics. Our results support the statement that the intertidal area is a pivotal factor in regulating trophic interactions, by promoting niche partitioning and diversification of trophic resources between species. Moreover, niche size and dietary divergence of species decreased with increasing regularity of trophic strategies within assemblages, suggesting that species occupied more restricted trophic niches when they were less subjected to competition for the same food resources. These findings emphasize the importance of local conditions and the functional composition of assemblages in modulating the trophic resources consumed by fish in estuarine environments.},
	keywords = {Estuary, functional diversity, Isotopic niche, stable isotope, Trophic competition},
	issn = {02727714},
	doi = {10.1016/j.ecss.2024.108686},
	url = {https://www.sciencedirect.com/science/article/pii/S0272771424000738},
	author = {Teichert, Nils and Liz{\'e}, Anne and Lepage, Mario and Cabral, Henrique and Trancart, Thomas and Acou, Anthony and Larregieu, Marie and Feunteun, Eric and Carpentier, Alexandre}
}
@article {9606,
	title = {Northeast Atlantic elasmobranch community on the move: Functional reorganization in response to climate change},
	journal = {Global Change Biology},
	volume = {30},
	year = {2024},
	month = {Jan-01-2024},
	abstract = {While spatial distribution shifts have been documented in many marine fishes under global change, the responses of elasmobranchs have rarely been studied, which may have led to an underestimation of their potential additional threats. Given their irreplaceable role in ecosystems and their high extinction risk, we used a 24-year time series (1997{\textendash}2020) of scientific bottom trawl surveys to examine the effects of climate change on the spatial distribution of nine elasmobranch species within Northeast Atlantic waters. Using a hierarchical modeling of species communities, belonging to the joint species distribution models, we found that suitable habitats for four species increased on average by a factor of 1.6 and, for six species, shifted north-eastwards and/or to deeper waters over the past two decades. By integrating species traits, we showed changes in habitat suitability led to changes in the elasmobranchs trait composition. Moreover, communities shifted to deeper waters and their mean trophic level decreased. We also note an increase in the mean community size at maturity concurrent with a decrease in fecundity. Because skates and sharks are functionally unique and dangerously vulnerable to both climate change and fishing, we advocate for urgent considerations of species traits in management measures. Their use would make it better to identify species whose loss could have irreversible impacts in face of the myriad of anthropogenic threats.},
	issn = {1354-1013},
	doi = {10.1111/gcb.v30.110.1111/gcb.17157},
	url = {https://onlinelibrary.wiley.com/toc/13652486/30/1https://onlinelibrary.wiley.com/doi/10.1111/gcb.17157https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.17157},
	author = {Coulon, No{\'e}mie and Elliott, Sophie and Teichert, Nils and Auber, Arnaud and McLean, Matthew and Barreau, Thomas and Feunteun, Eric and Carpentier, Alexandre}
}
@article {9643,
	title = {Quantifying larval dispersal portfolio in seabass nurseries using otolith chemical signatures},
	journal = {Marine Environmental Research},
	volume = {196},
	year = {2024},
	month = {Jan-04-2024},
	pages = {106426},
	abstract = {The temporal asynchronies in larvae production from different spawning areas are fundamental components for ensuring stability and resilience of marine metapopulations. Such a concept, named portfolio effect, supposes that diversifying larval dispersal histories should minimize the risk of recruitment failure by increasing the probability that at least some larvae successfully settle in nursery. Here, we used a reconstructive approach based on otolith chemistry to quantify the larval dispersal portfolio of the European seabass,\&nbsp;Dicentrarchus labrax, across six estuarine nursery areas of the northeast Atlantic Ocean. The analysis of natal and trajectory signatures indicated that larvae hatch in distinct environments and then dispersed in water masses featured by contrasting chemical signatures. While some trace elements appeared affected by temporal changes (Mn and Sr), others varied spatially during the larval stage but remained poorly affected by temporal fluctuation and fish physiology (Ba, Cu, Rb and Zn). We then proposed two diversity metrics based on richness and variations of chemical signatures among populations to reflect spatio-temporal diversity in natal origins and larval trajectories (i.e., estimates of dispersal portfolio). Along the French coast, the diversity estimates were maximum in nurseries located at proximity of offshore spawning sites and featured by complex offshore hydrodynamic contexts, such as the Mont St-Michel bay. Finally, our findings indicate that the dispersal portfolio was positively related with the local abundance of seabass juveniles, supporting the assumption that heterogeneity in dispersal history contributes to promote recruitment success in nurseries.},
	keywords = {Connectivity, dispersion, Dynamic time warping, Fish nursery, Larval life history, Otolith chemistry},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2024.106426},
	url = {https://www.sciencedirect.com/science/article/pii/S0141113624000874},
	author = {Teichert, Nils and Tabouret, H{\'e}l{\`e}ne and Liz{\'e}, Anne and Daverat, Fran{\c c}oise and Acou, Anthony and Trancart, Thomas and Virag, Laure-Sarah and Pecheyran, Christophe and Feunteun, Eric and Carpentier, Alexandre}
}
@article {9673,
	title = {Shark critical life stage vulnerability to monthly temperature variations under climate change},
	journal = {Marine Environmental Research},
	volume = {198},
	year = {2024},
	month = {Jan-06-2024},
	pages = {106531},
	abstract = {In a 10-month experimental study, we assessed the combined impact of warming and acidification on critical life stages of small-spotted catshark (Scyliorhinus canicula). Using recently developed frameworks, we disentangled individual and group responses to two climate scenarios projected for 2100 (SSP2-4.5: Middle of the road and SSP5-8.5: Fossil-fueled Development). Seasonal temperature fluctuations revealed the acute vulnerability of embryos to summer temperatures, with hatching success ranging from 82\% for the control and SSP2-4.5 treatments to only 11\% for the SSP5-8.5 treatment. The death of embryos was preceded by distinct individual growth trajectories between the treatments, and also revealed inter-individual variations within treatments. Embryos with the lowest hatching success had lower yolk consumption rates, and growth rates associated with a lower energy assimilation, and almost all of them failed to transition to internal gills. Within 6 months after hatching, no additional mortality was observed due to cooler temperatures.},
	keywords = {Acidification, Ecological traits, Elasmobranch, Embryos, Global warming, Hatching success, IPCC, scenarios},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2024.106531},
	author = {Coulon, No{\'e}mie and Pilet, Stanislas and Liz{\'e}, Anne and Lacoue-Labarthe, Thomas and Sturbois, Anthony and Toussaint, Aur{\`e}le and Feunteun, Eric and Carpentier, Alexandre}
}
@article {9557,
	title = {Structural and functional characterization of an egg-laying hormone signaling system in a lophotrochozoan {\textendash} The pacific oyster (Crassostrea gigas)},
	journal = {General and Comparative Endocrinology},
	volume = {346},
	year = {2024},
	month = {Jan-01-2024},
	pages = {114417},
	issn = {00166480},
	doi = {10.1016/j.ygcen.2023.114417},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016648023002228},
	author = {Favrel, P. and Dubos, M.P. and Bernay, B. and Pasquier, J. and Schwartz, J. and Lefranc, B. and Mouret, L. and Guillaume Rivi{\`e}re and Leprince, J. and Bondon, A.}
}
@article {9649,
	title = {Testing for concordance between predicted species richness, past prioritization, and marine protected area designations in the western Indian Ocean},
	journal = {Conservation Biology},
	year = {2024},
	month = {Apr-03-2026},
	issn = {0888-8892},
	doi = {10.1111/cobi.14256},
	url = {https://conbio.onlinelibrary.wiley.com/doi/10.1111/cobi.14256},
	author = {McClanahan, Tim R. and Friedlander, Alan M. and Wickel, Julien and Graham, Nicholas A. J. and Bruggemann, J. Henrich and Guillaume, Mireille M. M. and Chabanet, P. and Porter, Sean and Schleyer, Michael H. and Azali, M. Kodia and Muthiga, N. A.}
}
@article {9528,
	title = {Tracing the fate of seabird-derived nitrogen in a coral reef using nitrate and coral skeleton nitrogen isotopes},
	journal = {Limnology and Oceanography},
	year = {2024},
	month = {Mar-01-2024},
	issn = {0024-3590},
	doi = {10.1002/lno.12485},
	url = {https://aslopubs.onlinelibrary.wiley.com/doi/10.1002/lno.12485},
	author = {Choisnard, No{\'e}mie and Duprey, Nicolas Noel and Wald, Tanja and Thibault, Martin and Houlbr{\`e}que, Fanny and Foreman, Alan D. and Cuet, Pascale and Mireille M.M. Guillaume and Vonhof, Hubert and Sigman, Daniel M. and Haug, Gerald H. and Maguer, Jean-Fran{\c c}ois and L{\textquoteright}Helguen, St{\'e}phane and Mart{\'\i}nez-Garc{\'\i}a, Alfredo and Lorrain, Anne}
}
@article {9290,
	title = {Artificial reef effectiveness changes among types as revealed by underwater hyperspectral imagery},
	journal = {Restoration Ecology},
	year = {2023},
	month = {Dec-07-2024},
	pages = {e13978},
	abstract = {Artificial reefs (ARs) are designed to mimic natural habitats and promote marine life. Their effectiveness is however debatable and can depend on factors such as structural complexity and construction material. Old artificial reefs (OARs) were made of concrete mold of simple geometric shapes, limiting their ability to mimic the complexity of natural reefs. Recent advancements in three-dimentional (3D)-printing technology have enabled the creation of 3D-printed artificial reefs (3DRs) with biocompatible material and complex structures that can better simulate the natural habitats. We employed underwater hyperspectral technology to estimate the performance of these reefs and compare the benthic photosynthetic signal of natural reefs (NATs) with those of ARs (OARs and 3DRs) in coastal area of the north-western Mediterranean (France and Monaco Principality). We expected differences in reflectance signals between OARs and NATs, and signals closer to NATs in 3DRs than OARs. Underwater hyperspectral technology was able to detect higher chlorophyll-a\&nbsp;derived signals on NATs than OARs. Moreover, the magnitude of differences between 3DRs and NATs was smaller than that between OARs and NATs. Although ARs were not capable of mimicking natural reefs, the use of 3D-printed ARs might ameliorate their effectiveness for coastal reconciliation.},
	issn = {1061-2971},
	doi = {10.1111/rec.13978},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/rec.13978},
	author = {Elisabeth Riera and C{\'e}dric Hubas and Ungermann, Mischa and Rigot, Guy and Pey, Alexis and Patrice Francour and Rossi, Fracesca}
}
@article {9524,
	title = {A benchmark for computational analysis of animal behavior, using animal-borne tags},
	journal = {arXiv},
	year = {2023},
	month = {05/2023},
	abstract = {Animal-borne sensors ({\textquoteleft}bio-loggers{\textquoteright}) can record a suite of kinematic and environmental data, which can elucidate animal ecophysiology and improve conservation efforts. Machine learning techniques are useful for interpreting the large amounts of data recorded by bio-loggers, but there exists no standard for comparing the different machine learning techniques in this domain. To address this, we present the Bio-logger Ethogram Benchmark (BEBE), a collection of datasets with behavioral annotations, standardized modeling tasks, and evaluation metrics. BEBE is to date the largest, most taxonomically diverse, publicly available benchmark of this type, and includes 1654 hours of data collected from 149 individuals across nine taxa. We evaluate the performance of ten different machine learning methods on BEBE, and identify key challenges to be addressed in future work. Datasets, models, and evaluation code are made publicly available at https://github.com/earthspecies/ BEBE, to enable community use of BEBE as a point of comparison in methods development.},
	keywords = {Accelerometers, animal behavior, Bio-loggers, Clustering, Machine Learning, Time series},
	author = {Benjamin Hoffman and Maddie Cusimano and Vittorio Baglione and Daniela Canestrari and Chevallier, Damien and Dominic L. DeSantis and Lor{\`e}ne Jeantet and Monique A. Ladds and Takuya Maekawa and Vicente Mata-Silva and V{\'\i}ctor Moreno-Gonz{\'a}lez and Eva Trapote and Outi Vainio and Antti Vehkaoja and Ken Yoda and Katherine Zacarian and Ari Friedlaender and Christian Rutz}
}
@article {9308,
	title = {Benchmarking global biodiversity of decapod crustaceans (Crustacea: Decapoda)},
	journal = {Journal of Crustacean Biology},
	volume = {43},
	year = {2023},
	month = {Aug-01-2023},
	issn = {0278-0372},
	doi = {10.1093/jcbiol/ruad042},
	url = {https://academic.oup.com/jcb/article/doi/10.1093/jcbiol/ruad042/7234762},
	author = {De Grave, Sammy and Decock, Wim and Dekeyzer, Stefanie and Davie, Peter J F and Fransen, Charles H J M and Boyko, Christopher B and Poore, Gary C B and Macpherson, Enrique and Ahyong, Shane T and Crandall, Keith A and de Mazancourt, Valentin and Osawa, Masayuki and Chan, Tin-Yam and Ng, Peter K L and Lemaitre, Rafael and van der Meij, Sancia E T and Santos, Sandro}
}
@article {9085,
	title = {Biogeographical snapshot of life-history traits of European silver eels: insights from otolith microchemistry},
	journal = {Aquatic Sciences},
	volume = {85},
	year = {2023},
	month = {Jan-04-2023},
	abstract = {Life-history traits of eels display a high level of phenotypic plasticity in response to large-scale biogeographical drivers, as well as local conditions encountered during the continental phase. Here, we provided a biogeographical snapshot of the variability of life-history traits of eels (Anguilla anguilla), across a large proportion of their natural distribution range. Silver eels (n = 99) were collected across eleven European catchments to investigate how life-history traits vary along geographical and saline habitats, as it was inferred from the Sr:Ca ratio in otoliths. Among 13 life-history traits tested, 3 of them such as total length, body or liver weight were related to geographical coordinates. Overall, eels grow faster in southern Europe and migrate earlier suggesting that the silvering process is related to the local growth conditions more than fish age. The salinity profiles revealed by the otoliths{\textquoteright} Sr:Ca ratios indicate that eels with a brackish life-history generally grow faster, reach larger size-at-age, and have a better condition than eels living in freshwater. This observation associated with the lower abundance of the sanguivorous swimbladder nematode, Anguillicola crassus, confirms the importance of brackish areas for sustaining the eel production. A large proportion of the observed variation of life-history traits remained unexplained by the biogeographical trends and salinity condition, which suggests that other drivers act at the catchment scale.<br>
},
	keywords = {Anguilla anguilla, Biogeography, Brackish habitat, otolith, phenotypic plasticity, Sr:Ca ratio},
	issn = {1015-1621},
	doi = {10.1007/s00027-023-00940-4},
	url = {https://link.springer.com/10.1007/s00027-023-00940-4},
	author = {Teichert, Nils and Bourillon, Bastien and Suzuki, Kyoko and Acou, Anthony and Alexandre Carpentier and Kuroki, Mari and Righton, David and Thomas Trancart and Virag, Laure-Sarah and Walker, Alan and Otake, Tsuguo and Eric Feunteun}
}
@article {9238,
	title = {Coral reef fish communities of natural habitats and man-made coastal structures in Bora-Bora (French Polynesia)},
	journal = {Belgian Journal of Zoology},
	volume = {153},
	year = {2023},
	month = {May-01-2023},
	doi = {10.26496/bjz.2023.109},
	url = {https://www.belgianjournalofzoology.eu/BJZ/article/view/109},
	author = {Gairin, Emma and Minier, Lana and Claverie, Thomas and Charlotte R. Dromard and Maueau, Tehani and Collin, Antoine and Fr{\'e}d{\'e}rich, Bruno and Bertucci, Fr{\'e}d{\'e}ric and Lecchini, David}
}
@article {9192,
	title = {Data quality control considerations in multivariate environmental monitoring: experience of the French coastal network SOMLIT},
	journal = {Frontiers in Marine Science},
	volume = {10},
	year = {2023},
	month = {Feb-04-2025},
	doi = {doi.org/10.3389/fmars.2023.1135446},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2023.1135446/full},
	author = {Breton, Elsa and Savoye, Nicolas and Rimmelin-Maury, Peggy and Sautour, Benoit and Goberville, Eric and Lheureux, Arnaud and Cariou, Thierry and Ferreira, Sophie and Agogue, Helene and Alliouane, Samir and Aubert, Fabien and Aubin, S{\'e}bastien and Berthebaud, Eric and Blayac, Hadrien and Blondel, Lucie and Boulart, C{\'e}dric and Bozec, Yann and Bureau, Sarah and Caillo, Arnaud and Cauvin, Arnaud and Cazes, Jean-Baptiste and Chasselin, L{\'e}o and Pascal Claquin and Conan, Pascal and Cordier, Marie-Ange and Costes, Laurence and Crec{\textquoteright}hriou, Romain and Crispi, Olivier and Crouvoisier, Muriel and David, Val{\'e}rie and Del Amo, Yolanda and De Lary, Hortense and Delebecq, Gaspard and Devesa, J{\'e}r{\'e}my and Domeau, Aur{\'e}lien and Durozier, Maria and Emery, Claire and Eric Feunteun and Juliette Fauchot and Gentilhomme, Val{\'e}rie and Geslin, Sandrine and Giraud, M{\'e}lanie and Granger{\'e}, Karine and Gr{\'e}gori, Gerald and Grossteffan, Emilie and Gueux, Aurore and Guillaudeau, Julien and Guillou, Ga{\"e}l and Harrewyn, Manon and Jolly, Orianne and Jude-Lemeilleur, Florence and Labatut, Paul and Labourdette, Nathalie and Lachauss{\'e}e, Nicolas and Lafont, Michel and Lagadec, V{\'e}ronique and Lambert, Christophe and Lamoureux, Jezebel and Lanceleur, Laurent and Lebreton, Beno{\^\i}t and Lecuyer, Eric and Lemeille, David and Leredde, Yann and Leroux, C{\'e}dric and Leynaert, Aude and L{\textquoteright}Helguen, St{\'e}phane and Li{\'e}nart, Camilla and Mac{\'e}, Eric and Maria, Eric and Marie, Barbara and Marie, Dominique and Mas, S{\'e}bastien and Mendes, Fabrice and Mornet, Line and Mostajir, Behzad and Mousseau, Laure and Nowaczyk, Antoine and Nunige, Sandra and Parra, Ren{\'e} and Paulin, Thomas and Pecqueur, David and Petit, Franck and Pineau, Philippe and Raimbault, Patrick and Rigaut-Jalabert, Fabienne and Salmeron, Christophe and Salter, Ian and Sauriau, Pierre-Guy and Seuront, Laurent and Sultan, Emmanuelle and Vald{\`e}s, R{\'e}mi and Vantrepotte, Vincent and Vidussi, Francesca and Voron, Florian and Vuillemin, Renaud and Zudaire, Laurent. and Garcia, Nicole}
}
@article {9004,
	title = {Decoupling carry-over effects from environment in fish nursery grounds},
	journal = {Science of The Total Environment},
	volume = {857},
	year = {2023},
	month = {Jan-01-2023},
	pages = {159487},
	abstract = {Life-history trait expression not only depends on the current environmental constraints, but also on the past ones that shaped traits expressed earlier in life. Such an effect, named carry-over, can occur in fish nursery grounds when juvenile performances after settlement are influenced by their larval traits in combination with conditions experienced in nurseries. To date, the impacts of environmental and human stressors on post-settlement traits have been assessed, but independently from larval traits, so that the contributions of environmental versus carry-over constraints remain unquantified. Here, we used a reconstructive approach based on otolith microstructure to investigate how carry-over and environment affect life-history traits of the European seabass,\&nbsp;Dicentrarchus labrax. In the northeast Atlantic Ocean, seabass juveniles were collected in six French estuarine nursery areas with contrasted environmental conditions (water temperature, salinity, food availability, and anthropogenic impacts), and five of their life-history traits across ontogenetic stages were measured (pelagic growth, larval duration, size at settlement, post-settlement growth and body condition). Piecewise structural equation model emphasized the strong co-variation of larval traits in response to food availability and temperature in the pelagic environment, stressing that fast growing larvae are characterized by shorter pelagic larval duration, but larger size at recruitment. However, the magnitude of carry-over effects greatly varied between traits, revealing that larval trait impacts on post-settlement traits remained minor as compared to the nursery environment. In estuarine nurseries, our findings suggest that resource allocation results from a trade-off between somatic growth and energy storage. Fish juveniles exposed to anthropogenic stress or risk of food limitation tended to predominantly invest in storage, whereas individuals in favourable conditions allocated their resources in somatic growth. These findings highlight the importance of heterogeneity in pelagic and nursery environments in understanding trait variations and population dynamic of estuarine dependent fish.},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2022.159487},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S004896972206586X},
	author = {Teichert, Nils and Liz{\'e}, Anne and Cabral, Henrique and Acou, Anthony and Trancart, Thomas and Virag, Laure-Sarah and Feunteun, Eric and Alexandre Carpentier}
}
@article {9537,
	title = {Dynamics of the Benthic Communities of Pigeon Islets (Guadeloupe Island, Lesser Antilles) from 2012 to 2021 Monitored by a Photo-Quadrats Technique},
	journal = {Gulf and Caribbean Research},
	volume = {34},
	year = {2023},
	month = {12/2023},
	pages = {GCFI1 - GCFI11},
	abstract = {Since 2012, the benthic communities of the Pigeon Islets (Guadeloupe Island, Lesser Antilles) have been monitored biannually by the National Park of Guadeloupe using photo{\textemdash}quadrats. This monitoring was carried out at 12 coral reef stations distributed around the islets. The data collected from 2012 to 2021 highlight the significant events that disrupted the coral communities of Guadeloupe. Among these remarkable phenomena, an episode of coral bleaching occurred in 2019, followed by the appearance of a new coral disease, Stony Coral Tissue Loss Disease (SCTLD), in 2020. As a result of these threats, a drop of 54\% of coral cover was observed in the monitored sites, accompanied by a rise of 16\% of the surface occupied by macroalgae. The protocol set up by the National Park of Guadeloupe was found to be efficient to follow the temporal dynamics of benthic reef communities.},
	keywords = {coral bleaching, Coral communities, coral disease, SCTLD, temporal dynamics},
	issn = {2572-1410},
	doi = {10.18785/gcr.3401.17},
	url = {https://aquila.usm.edu/gcr/vol34/iss1/17/},
	author = {Malahel, Hanna-May and Freschet, Camille and M{\`e}ge, Simone and Bouchon, Claude}
}
@article {9458,
	title = {The effect of interspecific and intraspecific diversity on microplastic ingestion in two co-occurring mussel species in South Africa},
	journal = {Marine Pollution Bulletin},
	volume = {196},
	year = {2023},
	month = {2023},
	doi = {https://doi.org/10.1016/j.marpolbul.2023.115649},
	author = {Lorenzo Cozzolino and Nicastro, Katy R. and S{\'e}bastien Lefebvre and Luana Corona and Pierre William Froneman and Christopher D. McQuaid and Zardi, Gerardo I.}
}
@article {9459,
	title = {Euendolithic Infestation of Mussel Shells Indirectly Improves the Thermal Buffering Offered by Mussel Beds to Associated Molluscs, but One Size Does Not Fit All},
	journal = {Diversity},
	volume = {15},
	year = {2023},
	month = {2023},
	doi = {https://doi.org/10.3390/d15020239},
	author = {Dievart, Alexia M. and Christopher D. McQuaid and Zardi, Gerardo I. and Nicastro, Katy R. and Pierre William Froneman}
}
@article {9061,
	title = {Feeding ecology of two deep-sea skates bycaught on demersal longlines off Kerguelen Islands, Southern Indian Ocean},
	journal = {Deep Sea Research Part I: Oceanographic Research Papers},
	volume = {194},
	year = {2023},
	month = {Jan-04-2023},
	pages = {103980},
	issn = {09670637},
	doi = {10.1016/j.dsr.2023.103980},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0967063723000195},
	author = {Faure, Johanna and Nicolas Gasco and C{\'e}line Bonillo and Munaron, Jean-Marie and Cherel, Yves and Clara P{\'e}ron}
}
@article {9393,
	title = {Influence of nutrient enrichment on colonisation and photosynthetic parameters of hard substrate marine microphytobenthos},
	journal = {Biofouling},
	year = {2023},
	month = {Feb-10-2023},
	pages = {1 - 18},
	abstract = {This study aimed to assess the influence of nutrient enrichment on the development of microalgal biofilm on concrete and PVC cubes. Three mesocosms were utilized to create a nutrient gradient over a period of 28 days. Various parameters including biomass, photosynthetic activity, microtopography, and extracellular polymeric substances (EPS) were measured. Imaging PAM techniques were employed to obtain surface-wide data. Results revealed that nutrient availability had no significant impact on Chl a biomass and the maximum quantum efficiency of PSII (Fv/Fm). The photosynthetic capacity and efficiency were minimally affected by nutrient availability. Interestingly, the relationship between microphytobenthic (MPB) biomass and photosynthesis and surface rugosity exhibited distinct patterns. Negative reliefs showed a strong correlation with Fv/Fm, while no clear pattern emerged for biomass on rough concrete structures. Overall, our findings demonstrate that under conditions of heightened eutrophication, biofilm photosynthesis thrives in the fissures and crevasses of colonized structures regardless of nutrient levels. This investigation provides valuable insights into the interplay between nutrient availability and surface rugosity.},
	issn = {0892-7014},
	doi = {10.1080/08927014.2023.2261852},
	url = {https://www.tandfonline.com/doi/full/10.1080/08927014.2023.2261852},
	author = {Vivier, Baptiste and Faucheux-Bourlot, Caroline and Orvain, Francis and Chasselin, L{\'e}o and Jolly, Orianne and Navon, Maxime and Boutouil, Mohamed and Goux, Didier and Dauvin, Jean-Claude and Pascal Claquin}
}
@article {9641,
	title = {Isotopic niches of diadromous fishes inform on interspecific competition in an obstructed catchment},
	journal = {Frontiers in Ecology and Evolution},
	volume = {11},
	year = {2023},
	month = {Apr-11-2025},
	abstract = {Competition arises when species share a limited resource, but this can be avoided through niche partitioning. Despite the large body of literature on diadromous fishes, very few studies have focused on niche partitioning when competing for resources. Diadromous fishes are suffering a global decline throughout their range in part due to their peculiar life history traits as they migrate from the sea to freshwater to spawn or the reverse. They are particularly sensitive to river fragmentation induced by barriers. Dams for instance are expected to alter the spatial distribution and resource exploitation of diadromous fishes as well as other organisms. Here, we studied the ecological niche of six taxa of diadromous fishes, temporally co-occurring in the same land{\textendash}sea continuum obstructed by two river dams. We used Bayesian mixing models run on C and N isotopes to infer the various habitats used and the origin of the trophic carbon in muscle and scale tissues of diadromous fishes. Results showed that the sub-adults of\&nbsp;Anguilla anguilla, juveniles of\&nbsp;Petromyzon marinus, and\&nbsp;Salmo trutta\&nbsp;exploit mainly the freshwater, or marine part for adults of\&nbsp;Lampetra fluviatilis, whereas juveniles of\&nbsp;Platichthys flesus\&nbsp;and Mugilidae use all the habitats of the land{\textendash}sea continuum. In the freshwater habitat, the microphytobenthos and biofilm are the main sources of carbon used, while in the marine habitat, the basal carbon sources are more diverse. The analyses of niche overlaps between diadromous fishes demonstrate that the widest isotopic niches, observed for\&nbsp;A. anguilla\&nbsp;and\&nbsp;P. flesus, also have more impact within the community. Results are discussed in terms of intra- and interspecific competition between these diadromous fishes and their generalist/specialist strategies in an obstructed catchment.},
	doi = {10.3389/fevo.2023.124245210.3389/fevo.2023.1242452.s001},
	url = {https://www.frontiersin.org/articles/10.3389/fevo.2023.1242452/fullhttps://www.frontiersin.org/articles/10.3389/fevo.2023.1242452/fullhttps://www.frontiersin.org/articles/10.3389/fevo.2023.1242452/supplementary-material/10.3389/fevo.2023.1242452.s001},
	author = {Liz{\'e}, Anne and Teichert, Nils and Roussel, Jean-Marc and Acou, Anthony and Feunteun, Eric and Carpentier, Alexandre}
}
@article {9523,
	title = {Key issues in assessing threats to sea turtles: knowledge gaps and future directions},
	journal = {Endangered Species Research},
	volume = {52},
	year = {2023},
	month = {Feb-12-2024},
	pages = {303 - 341},
	issn = {1863-5407},
	doi = {10.3354/esr01278},
	url = {https://www.int-res.com/abstracts/esr/v52/p303-341/},
	author = {Fuentes, MMPB and McMichael, E and Kot, CY and Silver-Gorges, I and Wallace, BP and Godley, BJ and Brooks, AML and Ceriani, SA and Cort{\'e}s-G{\'o}mez, AA and Dawson, TM and Dodge, KL and Flint, M and Jensen, MP and Komoroske, LM and Kophamel, S and Lettrich, MD and Long, CA and Nelms, SE and Patr{\'\i}cio, AR and Robinson, NJ and Seminoff, JA and Ware, M and Whitman, ER and Chevallier, Damien and Clyde-Brockway, CE and Korgaonkar, SA and Mancini, A and Mello-Fonseca, J and Monsinjon, JR and Neves-Ferreira, I and Ortega, AA and Patel, SH and Pfaller, JB and Ramirez, MD and Raposo, C and Smith, CE and Abreu-Grobois, FA and Hays, GC}
}
@article {9070,
	title = {Local Food Systems under Global Influence: The Case of Food, Health and Environment in Five Socio-Ecosystems},
	journal = {Sustainability},
	volume = {15},
	year = {2023},
	month = {Jan-02-2023},
	pages = {2376},
	doi = {10.3390/su15032376},
	url = {https://www.mdpi.com/2071-1050/15/3/2376},
	author = {Rapinski, Michael and Raymond, Richard and Davy, Damien and Herrmann, Thora and Bedell, Jean-Philippe and Ka, Abdou and Odonne, Guillaume and Chanteloup, Laine and Pascal Jean Lopez and Foulquier, Eric and da Silva, Eduardo Ferreira and El Deghel, Nathalie and Bo{\"e}tsch, Gilles and Coxam, V{\'e}ronique and Joliet, Fabienne and Guihard-Costa, Anne-Marie and Tib{\`e}re, Laurence and Nazare, Julie-Anne and Duboz, Priscilla}
}
@article {9559,
	title = {m6A Profile Dynamics Indicates Regulation of Oyster Development by m6A-RNA Epitranscriptomes},
	journal = {Genomics, Proteomics \& Bioinformatics},
	volume = {21},
	year = {2023},
	month = {Jan-08-2023},
	pages = {742 - 755},
	issn = {16720229},
	doi = {10.1016/j.gpb.2022.12.002},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1672022922001516},
	author = {Le Franc, Lorane and Petton, Bruno and Favrel, Pascal and Guillaume Rivi{\`e}re}
}
@article {9108,
	title = {Marine invertebrates and noise},
	journal = {Frontiers in Marine Science},
	volume = {10},
	year = {2023},
	month = {March-07-2023},
	abstract = {Within the set of risk factors that compromise the conservation of marine biodiversity, one of the least understood concerns is the noise produced by human operations at sea and from land. Many aspects of how noise and other forms of energy may impact the natural balance of the oceans are still unstudied. Substantial attention has been devoted in the last decades to determine the sensitivity to noise of marine mammals{\textemdash}especially cetaceans and pinnipeds{\textemdash} and fish because they are known to possess hearing organs. Recent studies have revealed that a wide diversity of invertebrates are also sensitive to sounds, especially via sensory organs whose original function is to allow maintaining equilibrium in the water column and to sense gravity. Marine invertebrates not only represent the largest proportion of marine biomass and are indicators of ocean health but many species also have important socio-economic values. This review presents the current scientific knowledge on invertebrate bioacoustics (sound production, reception, sensitivity), as well as on how marine invertebrates are affected by anthropogenic noises. It also critically revisits the literature to identify gaps that will frame future research investigating the tolerance to noise of marine ecosystems.},
	keywords = {marine invertebrates, marine noise pollution, noise effects, particle motion, sound detection, sound pressure, sound production, statocyst},
	doi = {10.3389/fmars.2023.1129057},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2023.1129057/full},
	author = {Sol{\'e}, Marta and Kaifu, Kenzo and Mooney, T. Aran and Nedelec, Sophie L. and Olivier, Fr{\'e}d{\'e}ric and Radford, Andrew N. and Vazzana, Mirella and Wale, Matthew A. and Semmens, Jayson M. and Simpson, Stephen D. and Buscaino, Giuseppa and Hawkins, Anthony and Aguilar de Soto, Natacha and Akamatsu, Tomoari and Chauvaud, Laurent and Day, Ryan D. and Fitzgibbon, Quinn and McCauley, Robert D. and Andr{\'e}, Michel}
}
@article {9117,
	title = {New insights into the diversity of cryptobenthic Cirripectes blennies in the Mascarene Archipelago sampled using Autonomous Reef Monitoring Structures (ARMS)},
	journal = {Ecology and Evolution},
	volume = {13},
	year = {2023},
	month = {Jan-03-2023},
	issn = {2045-7758},
	doi = {10.1002/ece3.v13.310.1002/ece3.9850},
	url = {https://onlinelibrary.wiley.com/toc/20457758/13/3},
	author = {Marion Cou{\"e}del and Dettai, Agn{\`e}s and Mireille M.M. Guillaume and Bruggemann, Fleur and Bureau, Sophie and Baptiste Frattini and Verde~Ferreira, Am{\'e}lie and Azie, Jean-Lindsay and Bruggemann, J. Henrich}
}
@article {9052,
	title = {Physiological conditions favorable to domoic acid production by three Pseudo-nitzschia species},
	journal = {Journal of Experimental Marine Biology and Ecology},
	volume = {559},
	year = {2023},
	month = {Jan-02-2023},
	pages = {151851},
	issn = {00220981},
	doi = {10.1016/j.jembe.2022.151851},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0022098122001599},
	author = {Aurore Sauvey and Pascal Claquin and Le Roy, Bertrand and Jolly, Orianne and Juliette Fauchot}
}
@article {9469,
	title = {Socio-political acceptability of floating offshore wind farms in France: challenges and perspectives for marine governance towards sustainability},
	journal = {Ocean \& Coastal Management},
	volume = {236},
	year = {2023},
	month = {Jan-04-2023},
	pages = {106513},
	issn = {09645691},
	doi = {10.1016/j.ocecoaman.2023.106513},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0964569123000388},
	author = {Fofack-Garcia, Rhoda and Maz{\'e}, Camille and Safi, Georges and Lejart, Morgane and Chauvac, Nathalie and Thermes, Maud and Ragueneau, Olivier and Le Loc{\textquoteright}h, Francois and Nathalie Niquil}
}
@article {9514,
	title = {Structural and functional characterization of an egg-laying hormone signaling system in a lophotrochozoan - The pacific oyster (Crassostrea gigas).},
	journal = {Gen Comp Endocrinol},
	volume = {346},
	year = {2023},
	month = {2023 Nov 28},
	pages = {114417},
	abstract = {<p>The egg-laying hormones (ELHs) of gastropod mollusks were characterized more than forty years ago. Yet, they have remained little explored in other mollusks. To gain insights into the functionality of the ELH signaling system in a bivalve mollusk - the oyster Crassostrea gigas, this study investigates the processing of its ELH precursor (Cragi-ELH) by mass spectrometry. Some of the ELH mature peptides identified in this study were subsequently investigated by nuclear magnetic resonance and shown to adopt an extended alpha-helix structure in a micellar medium mimicking the plasma membrane. To further characterize the ELH signaling system in C. gigas, a G protein-coupled receptor phylogenetically related to ecdysozoan diuretic hormone DH44 and corticotropin-releasing hormone (CRH) receptors named Cragi-ELHR was also characterized functionally and shown to be specifically activated by the two predicted mature ELH peptides and their N-terminal fragments. Both Cragi-ELH and Cragi-ELHR encoding genes were mostly expressed in the visceral ganglia (VG). Cragi-ELH expression was significantly increased in the VG of both fully mature male and female oysters at the spawning stage. When the oysters were submitted to a nutritional or hyposaline stress, no change in the expression of the ligand or receptor genes was recorded, except for Cragi-ELHR only during a mild acclimation episode to brackish water. These results suggest a role of Cragi-ELH signaling in the regulation of reproduction but not in mediating the stress response in our experimental conditions.</p>
},
	issn = {1095-6840},
	doi = {10.1016/j.ygcen.2023.114417},
	author = {Favrel, P and Dubos, M P and Bernay, B and Pasquier, J and Schwartz, J and Lefranc, B and Mouret, L and Rivi{\`e}re, G and Leprince, J and Bondon, A}
}
@article {9463,
	title = {Symbiont-induced phenotypic variation in an ecosystem engineer mediates thermal stress for the associated community},
	journal = {Journal of Thermal Biology},
	volume = {112},
	year = {2023},
	month = {2023},
	issn = {0306-4565},
	doi = {https://doi.org/10.1016/j.jtherbio.2022.103428﻿},
	author = {Zardi, Gerardo I. and Seuront, Laurent and Christopher D. McQuaid and Pierre William Froneman and Nicastro, Katy R.}
}
@article {9407,
	title = {Updated Checklist of the Freshwater Shrimps (Decapoda: Caridea: Atyidae) of Mindoro Island, the Philippines, with a Description of a New Species of Caridina},
	journal = {Arthropoda},
	volume = {1},
	year = {2023},
	month = {Jan-12-2023},
	pages = {374 - 397},
	doi = {10.3390/arthropoda1040015},
	url = {https://www.mdpi.com/2813-3323/1/4/15},
	author = {de Mazancourt, Valentin and Freitag, Hendrik and von Rintelen, Kristina and Manuel-Santos, Marivene and von Rintelen, Thomas}
}
@article {9118,
	title = {What are the toxicity thresholds of chemical pollutants for tropical reef-building corals? A systematic review},
	journal = {Environmental Evidence},
	volume = {12},
	year = {2023},
	month = {Jan-12-2023},
	doi = {10.1186/s13750-023-00298-y},
	url = {https://environmentalevidencejournal.biomedcentral.com/articles/10.1186/s13750-023-00298-y},
	author = {Ou{\'e}draogo, Dakis-Yaoba and Mell, Hugo and Perceval, Olivier and Burga, Karen and Domart-Coulon, Isabelle and H{\'e}douin, Laetitia and Delaunay, Mathilde and Mireille M.M. Guillaume and Castelin, Magalie and Calvayrac, Christophe and Kerkhof, Odile and Sordello, Romain and Reyjol, Yorick and Ferrier-Pages, Christine}
}
@article {9006,
	title = {Anthropogenic Contaminants Shape the Fitness of the Endangered European Eel: A Machine Learning Approach},
	journal = {Fishes},
	volume = {7},
	year = {2022},
	month = {Jan-10-2022},
	pages = {274},
	abstract = {European eel is thought to be a symbol of the effects of global change on aquatic biodiversity. The species has persisted for millions of years and faced drastic environmental fluctuations thanks to its phenotypic plasticity. However, the species has recently declined to historically low levels under synergistic human pressures. Sublethal chemical contamination has been shown to alter reproductive capacity, but the impacts and required actions are not fully addressed by conservation plans. This paper proposes a modelling approach to quantify the effects of sublethal contamination by anthropogenic pollutants on the expression of life history traits and related fitness of the critically endangered European eel.\&nbsp;Material and Methods: We sampled female silver eels from eight different catchments across Europe previously shown to be representative of the spectrum of environmental variability and contamination. We measured 11 fitness-related life history traits within four main categories: fecundity, adaptability and plasticity, migratory readiness, and spawning potential. We used machine learning in models to explore the phenotypic reaction (expression of these life history traits) according to geographical parameters, parasite burdens (the introduced nematode\&nbsp;Anguillicoloides crassus) and anthropogenic contaminants (persistent organic pollutants (POPs) in muscular tissue and trace elements (TEs) in gonads, livers and muscles). Finally, we simulated, the effects of two management scenarios{\textemdash}contamination reduction and contamination increase{\textemdash}on the fecundity and recruitment.\&nbsp;Results: Contamination in our sampling was shown to have a stronger control on life history traits than do geographic and environmental factors that are currently described in the literature. We modelled different contamination scenarios to assess the benefit of mitigation: these scenarios suggest that reducing pollutants concentrations to the lowest values that occurred in our sampling design would double the fecundity of eels compared to the current situation.\&nbsp;Discussion: Remediation of contamination could represent a viable management option for increasing the resilience of eel populations, with much more effects than solely reducing fishing mortality. More broadly, our work provides an innovative way for quantitative assessment of the reaction norms of species{\textquoteright} biological traits and related fecundity to contamination by organic and inorganic pollutions thus opening new management and conservation pathways to revert the erosion of biodiversity.},
	doi = {10.3390/fishes7050274},
	url = {https://www.mdpi.com/2410-3888/7/5/274},
	author = {Bourillon, Bastien and Feunteun, Eric and Acou, Anthony and Trancart, Thomas and Teichert, Nils and Belpaire, Claude and Dufour, Sylvie and Bustamante, Paco and Aarestrup, Kim and Walker, Alan and Righton, David}
}
@article {8759,
	title = {Bi-decadal changes in nutrient concentrations and ratios in marine coastal ecosystems: The case of the Arcachon bay, France},
	journal = {Progress in Oceanography},
	volume = {201},
	year = {2022},
	month = {Jan-02-2022},
	pages = {102740},
	issn = {00796611},
	doi = {10.1016/j.pocean.2022.102740},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0079661122000027},
	author = {Lheureux, A. and David, V. and Del Amo, Y. and Soudant, D. and Auby, I. and Ganthy, F. and Blanchet, H. and Cordier, M-A. and Costes, L. and Ferreira, S. and Mornet, L. and Nowaczyk, A. and Parra, M. and D{\textquoteright}Amico, F. and Gouriou, L. and Meteigner, C. and Oger-Jeanneret, H. and Rigouin, L. and Rumebe, M. and Tournaire, M-P. and Trut, F. and Trut, G. and Savoye, N.}
}
@article {8804,
	title = {Biologging of emperor penguins {\textendash} attachment techniques and associated deployment performance},
	journal = {PLoS ONE},
	year = {2022},
	doi = {10.1101/2021.06.08.446548},
	url = {https://hal.archives-ouvertes.fr/hal-03409952},
	author = {Houstin, Aymeric and Zitterbart, Daniel and Winterl, Alexander and Richter, Sebastian and Planas-Bielsa, V{\'\i}ctor and Chevallier, Damien and Ancel, Andr{\'e} and Fournier, J{\'e}r{\^o}me and Fabry, Ben and Le Bohec, C{\'e}line}
}
@article {8991,
	title = {Cephalopod palaeobiology: evolution and life history of the most intelligent invertebratesAbstract},
	journal = {Swiss Journal of Palaeontology},
	volume = {141},
	year = {2022},
	month = {Jan-12-2022},
	issn = {1664-2376},
	doi = {10.1186/s13358-022-00247-1},
	url = {https://sjpp.springeropen.com/articles/10.1186/s13358-022-00247-1},
	author = {Klug, Christian and Laure Bonnaud-Ponticelli and Nabhitabhata, Jaruwat and Fuchs, Dirk and De Baets, Kenneth and Cheng, Ji and Hoffmann, Ren{\'e}}
}
@book {8753,
	title = {Chapter 6 - Fishes and Estuarine Environmental Health},
	year = {2022},
	pages = {332 - 379},
	publisher = {Wiley},
	organization = {Wiley},
	edition = {1},
	abstract = {This chapter addresses the use of fish as indicators of environmental health. The main anthropogenic pressures impacting estuarine fishes are reviewed, as well as the main types of responses by fishes at different levels of biological organisation. Fishes have been widely used to assess estuarine health through different methodological approaches, namely comparisons with historical data or reference conditions, experimental approaches, environmental impact or risk assessment methods, as well as qualitative or quantitative indicators and models. A large number of multi-metric indices based on fish have been proposed and are routinely used in environmental assessments, although to disentangle natural variability from anthropogenic pressures in a multi-stress context of global change is still a major challenge.},
	isbn = {9781444336672},
	doi = {10.1002/978111970534510.1002/9781119705345.ch6},
	url = {https://onlinelibrary.wiley.com/doi/book/10.1002/9781119705345},
	author = {Cabral, Henrique N. and Borja, Angel and Fonseca, Vanessa F. and Harrison, Trevor D. and Teichert, Nils and Lepage, Mario and Leal, Miguel C.},
	editor = {Whitfield, Alan K. and Able, Kenneth W. and Blaber, Stephen J.M. and Elliott, Michael}
}
@article {8649,
	title = {Classification of underwater photogrammetry data for temperate benthic rocky reef mapping},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {270},
	year = {2022},
	month = {Jan-06-2022},
	pages = {107833},
	issn = {02727714},
	doi = {10.1016/j.ecss.2022.107833},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771422000920},
	author = {Ternon, Q. and Danet, V. and Thiriet, P. and Ysnel, F. and Eric Feunteun and Collin, A.}
}
@article {9003,
	title = {European flounder foraging movements in an estuarine nursery seascape inferred from otolith microchemistry and stable isotopes},
	journal = {Marine Environmental Research},
	volume = {182},
	year = {2022},
	month = {Jan-12-2022},
	pages = {105797},
	abstract = {Despite the importance of estuarine nurseries in the regulation of many fish stocks, temporal and spatial movements and habitat use patterns of juvenile fish remain poorly understood. Overall, combining several movement metrics allowed us to characterize dispersal patterns of juvenile flounder,\&nbsp;Platichthys flesus,\&nbsp;along an estuarine seascape. Specifically, we investigated otolith microchemistry signatures (Sr:Ca and Ba:Ca ratios) and stable isotope ratios (δ13C and δ15N) in muscles of these juveniles, during three consecutive years to assess inter-annual fluctuations in their home range and isotopic niches. The morphological condition and lipid content of individuals were lower in years of high as compared to low dispersal along the estuarine gradient. We discuss these results in relation to the ecosystem productivity and intra- and inter-specific competition level, which in turn affects movements and foraging behaviors of juvenile flounders.},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2022.105797},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0141113622002422},
	author = {Teichert, Nils and Liz{\'e}, Anne and Tabouret, H{\'e}l{\`e}ne and Roussel, Jean-Marc and Bareille, Gilles and Trancart, Thomas and Acou, Anthony and Virag, Laure-Sarah and Pecheyran, Christophe and Alexandre Carpentier and Feunteun, Eric}
}
@book {9059,
	title = {European Spatial Data for Coastal and Marine Remote SensingLocal Circalittoral Rocky Seascape Structuring Fish Community: Insights from a Photogrammetric Approach},
	year = {2022},
	pages = {229 - 234},
	publisher = {Springer International Publishing},
	organization = {Springer International Publishing},
	address = {Cham},
	abstract = {Fish face multiple environmental pressures acting as multiscale filters structuring the community [6]. Study of the effect of local (~100 m2) habitat components such as habitat architecture, substrate composition, and benthic community on fish community is still limited because of the technical difficulties to sample reliable descriptors of all these habitat components. Nevertheless, the effect of the 3D architecture, especially the complexity, has been highlighted to act as an important variable, locally structuring fish communities and leading to an increase in diversity (species richness and Shannon index) and quantity (total density and biomass) of fish [1]. Photogrammetry is extending to submarine environment and allows to produce very fine information of the architecture and substrate composition [5], as well as of the benthic community [4]. The influence of the different habitat components (i.e., architecture, substrate composition, and benthic community) on the structure of fish community is here investigated, as well as the interest of photogrammetry in comparison to visual observation (Fig. 1).},
	keywords = {Architecture, Benthic community, Fish community, Photogrammetry, Seascape, Substrate composition},
	isbn = {978-3-031-16212-1},
	doi = {10.1007/978-3-031-16213-810.1007/978-3-031-16213-8_16},
	url = {https://link.springer.com/10.1007/978-3-031-16213-8},
	author = {Ternon, Quentin and Collin, Antoine and Feunteun, Eric and Ysnel, Fr{\'e}d{\'e}ric and Danet, Valentin and Guillaume, Manon and Thiriet, Pierre},
	editor = {Niculescu, Simona}
}
@article {8713,
	title = {Fibropapillomatosis Prevalence and Distribution in Immature Green Turtles (Chelonia mydas) in Martinique Island (Lesser Antilles)},
	journal = {EcoHealth},
	year = {2022},
	month = {Mar-06-2022},
	issn = {1612-9202},
	doi = {10.1007/s10393-022-01601-y},
	url = {https://link.springer.com/10.1007/s10393-022-01601-y},
	author = {Roost, Thibaut and Schies, Jo-Ann and Girondot, Marc and Robin, Jean-Patrice and Lelong, Pierre and Martin, Jordan and Siegwalt, Flora and Jeantet, Lor{\`e}ne and Giraudeau, Mathieu and Le Loch, Guillaume and Bejarano, Manola and Bonola, Marc and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Andreani, Lucas and Jacaria, Fran{\c c}ois and Campistron, Guilhem and Lathi{\`e}re, Anthony and Martial, Fran{\c c}ois and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and R{\'e}gis, Sidney and Lecerf, Nicolas and Frouin, C{\'e}dric and Lefebvre, Fabien and Aubert, Nathalie and Flora, Fr{\'e}d{\'e}ric and Pimentel, Esteban and Lafolle, Rachelle and Thobor, Florence and Arthus, Mosiah and Etienne, Denis and Lecerf, Natha{\"e}l and All{\'e}nou, Jean-Pierre and Desigaux, Florian and Larcher, Eug{\`e}ne and Larcher, Christian and Curto, Alberto Lo and Befort, Joanne and Maceno-Panevel, Myriane and Lepori, Muriel and Chevallier, Pascale and Chevallier, Tao and Meslier, St{\'e}phane and Landreau, Anthony and Habold, Caroline and Le Maho, Yvon and Chevallier, Damien}
}
@article {8714,
	title = {Food selection and habitat use patterns of immature green turtles (Chelonia mydas) on Caribbean seagrass beds dominated by the alien species Halophila stipulacea},
	journal = {Global Ecology and Conservation},
	volume = {37},
	year = {2022},
	month = {Jan-09-2022},
	pages = {e02169},
	issn = {23519894},
	doi = {10.1016/j.gecco.2022.e02169},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2351989422001718},
	author = {Siegwalt, Flora and Jeantet, Lor{\`e}ne and Lelong, Pierre and Martin, Jordan and Girondot, Marc and Bustamante, Paco and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Andreani, Lucas and Jacaria, Fran{\c c}ois and Campistron, Guilhem and Lathi{\`e}re, Anthony and Barotin, Charl{\`e}ne and Buret-Rochas, Ga{\"e}lle and Barre, Philippe and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and R{\'e}gis, Sidney and Lecerf, Nicolas and Frouin, C{\'e}dric and Lefebvre, Fabien and Aubert, Nathalie and Arthus, Mosiah and Etienne, Denis and All{\'e}nou, Jean-Pierre and Delnatte, C{\'e}sar and Lafolle, Rachelle and Thobor, Florence and Chevallier, Pascale and Chevallier, Tao and Lepori, Muriel and Assio, Cindy and Grand, Cl{\'e}ment and Bonola, Marc and Tursi, Yannick and Varkala, Pierre-Walter and Meslier, St{\'e}phane and Landreau, Anthony and Le Maho, Yvon and Habold, Caroline and Robin, Jean-Patrice and Chevallier, Damien}
}
@article {8975,
	title = {Life history and ossification patterns in Miguashaia bureaui reveal the early evolution of osteogenesis in coelacanths},
	journal = {PeerJ},
	volume = {10},
	year = {2022},
	month = {Jan-01-2022},
	pages = {e13175},
	abstract = {The study of development is critical for revealing the evolution of major vertebrate lineages. Coelacanths have one of the longest evolutionary histories among osteichthyans, but despite access to extant representatives, the onset of their weakly ossified endoskeleton is still poorly understood. Here we present the first palaeohistological and skeletochronological study of\&nbsp;Miguashaia bureaui\&nbsp;from the Upper Devonian of Canada, pivotal for exploring the palaeobiology and early evolution of osteogenesis in coelacanths. Cross sections of the caudal fin bones show that the cortex is made of layers of primary bone separated by lines of arrested growth, indicative of a cyclical growth. The medullary cavity displays remnants of calcified cartilage associated with bony trabeculae, characteristic of endochondral ossification. A skeletochronological analysis indicates that rapid growth during a short juvenile period was followed by slower growth in adulthood. Our new analysis highlights the life history and palaeoecology of\&nbsp;Miguashaia bureaui\&nbsp;and reveals that, despite differences in size and habitat, the poor endoskeletal ossification known in the extant\&nbsp;Latimeria chalumnae\&nbsp;can be traced back at least 375 million years ago.},
	doi = {10.7717/peerj.1317510.37473/fic/10.7717/peerj.13175},
	url = {https://peerj.com/articles/13175},
	author = {Mond{\'e}jar Fern{\'a}ndez, Jorge and Fran{\c c}ois J Meunier and Cloutier, Richard and Cl{\'e}ment, Ga{\"e}l and Laurin, Michel}
}
@article {8855,
	title = {Linking eutrophication to carbon dioxide and methane emissions from exposed mangrove soils along an urban gradient},
	journal = {Science of The Total Environment},
	volume = {850},
	year = {2022},
	month = {Jan-12-2022},
	pages = {157988},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2022.157988},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969722050872},
	author = {Barroso, Glenda C. and Gwena{\"e}l Abril and Machado, Wilson and Abuchacra, Rodrigo C. and Peixoto, Roberta B. and Bernardes, Marcelo and Marques, Gabriela S. and Sanders, Christian J. and Oliveira, Gabriela B. and Oliveira Filho, Silvio R. and Amora-Nogueira, Leonardo and Marotta, Humberto}
}
@article {8923,
	title = {Mangrove microbiota along the urban-to-rural gradient of the Cayenne estuary (French Guiana, South America): Drivers and potential bioindicators},
	journal = {Science of The Total Environment},
	volume = {807},
	year = {2022},
	month = {Jan-02-2022},
	pages = {150667},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2021.150667},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969721057454},
	author = {Fiard, Maud and Cuny, Philippe and Sylvi, L{\'e}a and C{\'e}dric Hubas and J{\'e}z{\'e}quel, Ronan and Lamy, Dominique and Walcker, Romain and El Houssainy, Amonda and Heimb{\"u}rger-Boavida, Lars-Eric and Robinet, Tony and Bihannic, Isabelle and Gilbert, Franck and Michaud, Emma and Guillaume Dirberg and Militon, C{\'e}cile}
}
@article {8959,
	title = {Methods to detect spatial biases in tracking studies caused by differential representativeness of individuals, populations and time},
	journal = {Diversity and Distributions},
	year = {2022},
	month = {Mar-10-2024},
	issn = {1366-9516},
	doi = {10.1111/ddi.13642},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/ddi.13642},
	author = {Morera-Pujol, Virginia and Catry, Paulo and Magalh{\~a}es, Maria and Clara P{\'e}ron and Reyes-Gonz{\'a}lez, Jos{\'e} Manuel and Granadeiro, Jos{\'e} Pedro and Milit{\~a}o, Teresa and Dias, Maria P. and Oro, Daniel and Dell{\textquoteright}Omo, Giacomo and M{\"u}ller, Martina and Paiva, Vitor H. and Metzger, Benjamin and Neves, Ver{\'o}nica and Navarro, Joan and Karris, Georgios and Xirouchakis, Stavros and Cecere, Jacopo G. and Zamora-L{\'o}pez, Antonio and Forero, Manuela G. and Ouni, Ridha and Romdhane, Mohamed Salah and De Felipe, Fernanda and Zajkov{\'a}, Zuzana and Cruz-Flores, Marta and Gr{\'e}millet, David and Gonz{\'a}lez-Sol{\'\i}s, Jacob and Ramos, Ra{\"u}l}
}
@article {8752,
	title = {Modelling past migrations to determine efficient management rules favouring silver eel escapement from a large regulated Floodplain Lake},
	journal = {Journal for Nature Conservation},
	volume = {67},
	year = {2022},
	month = {Jan-06-2022},
	pages = {126192},
	abstract = {As human activities caused a dramatic decline of European eel population since the 1970\&nbsp;s, the European Union has set targets to ensure a 40\%\&nbsp;escapement\&nbsp;to the sea of the silver eel biomass by considerably reducing anthropogenic impact. Thus, human obstacles to fish migration like dams and hydropower plants should enable efficient management measures ensuring safe passage for eels during the migration. In order to provide a quick and efficient assessment of eel conservation measure applied to the\&nbsp;sluice gates\&nbsp;of a large\&nbsp;floodplain\&nbsp;lake, we implemented a novel evaluation method using predictions on past migration seasons when no management measure were applied. For this purpose, we collected acoustic\&nbsp;telemetry\&nbsp;monitoring data over three migration seasons and fitted a predictive model based on Boosted Regression Trees (BRTs) to describe the influence of environmental parameters on migration. The water level difference over two days proved to be decisive, along with early migration occasions in the season, as an increase of at least 10\&nbsp;cm water level was associated with a sharp increase of migration probability. We then used the BRT model to predict migration occasions at the dam over 8 past seasons and forecast the impact on escapement of management measures if they had been applied. Thanks to this original prospective assessment of dam management measures, we identified an enhanced opening decision rule, capable of increasing the eel escapement for each year of the study. The management measure is particularly efficient during the years with poor hydrological conditions (i.e. droughts), that is the periods with the lowest initial escapement rates. Finally, efficient management measures to increase silver eel escapement were based on increasing the number of\&nbsp;gate opening\&nbsp;days by only a few days per year (c.a. 15\%). However, the management measure only focused on silver eel migration, so that further investigations should consider the impacts of other threats occurring during the life cycle. This study also provides a highly operational approach for fast evaluation of conservation measures, avoiding lengthy and expensive monitoring campaigns of classical ex-post assessments.},
	keywords = {Eel conservation, fish migration, Predictive model, Reservoir management},
	issn = {16171381},
	doi = {10.1016/j.jnc.2022.126192},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1617138122000656},
	author = {Bourgeaux, Jacques and Teichert, Nils and Gillier, Jean-Marc and Danet, Valentin and Eric Feunteun and Acou, Anthony and Charrier, Fabien and Mazel, Virgile and Alexandre Carpentier and Trancart, Thomas}
}
@article {8599,
	title = {A multi-approach study to reveal eel life-history traits in an obstructed catchment before dam removal},
	journal = {Hydrobiologia},
	year = {2022},
	month = {Sep-03-2022},
	abstract = {River fragmentation is expected to impact not only movement patterns and distribution of eels within catchment, but also their life-history traits. Here, we used otolith multi-elemental signatures to reconstruct life sequences of European silver eels within an obstructed catchment, just before the removal of hydropower dams. Beyond providing an initial state, we hypothesized that otolith signatures can provide crucial information on the way eels use the watershed. Indeed, their spatial distribution is expected to shape life-history traits, including condition coefficient, trophic level, growth rate, or infection by metazoan parasites. While Sr:Ca and Ba:Ca ratios were complementary in tracing fish movements between freshwater and estuary, the Ba:Ca variations allowed to discriminate three freshwater sectors. The eels assigned to the midstream sector were more mobile and exhibited lower growth rates, probably in response to higher competition at the vicinity of dams. While most eels are currently produced by downstream and midstream sectors, eels assigned to upper reaches of connected tributaries generally display higher richness in native parasite and higher body condition and lipid reserve, known to promote the success of migration and reproduction. In the near future, the dam removals will represent an outstanding experimental framework for evaluating impacts of catchment reconnection.},
	keywords = {LA-ICP-MS, life-history trait, metazoan parasites, otolith microchemistry, phenotypic plasticity, river barrier},
	issn = {0018-8158},
	doi = {10.1007/s10750-022-04833-9},
	url = {https://link.springer.com/10.1007/s10750-022-04833-9},
	author = {Teichert, Nils and Liz{\'e}, Anne and Tabouret, H{\'e}l{\`e}ne and G{\'e}rard, Claudia and Bareille, Gilles and Acou, Anthony and Alexandre Carpentier and Trancart, Thomas and Virag, Laure-Sarah and Robin, Emma and Druet, Morgan and Prod{\textquoteright}Homme, Jordan and Eric Feunteun}
}
@article {9027,
	title = {Myctobase, a circumpolar database of mesopelagic fishes for new insights into deep pelagic prey fields},
	journal = {Scientific Data},
	volume = {9},
	year = {2022},
	month = {Jan-12-2022},
	doi = {10.1038/s41597-022-01496-y},
	url = {https://www.nature.com/articles/s41597-022-01496-y},
	author = {Woods, Briannyn and Trebilco, Rowan and Walters, Andrea and Hindell, Mark and Guy Duhamel and Flores, Hauke and Moteki, Masato and Patrice Pruvost and Reiss, Christian and Saunders, Ryan A. and Sutton, Caroline and Gan, Yi-Ming and Van de Putte, Anton}
}
@article {9066,
	title = {Pairing AIS data and underwater topography to assess maritime traffic pressures on cetaceans: Case study in the Guadeloupean waters of the Agoa sanctuary},
	journal = {Marine Policy},
	volume = {143},
	year = {2022},
	month = {Jan-09-2022},
	pages = {105160},
	issn = {0308597X},
	doi = {10.1016/j.marpol.2022.105160},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0308597X2200207X},
	author = {Madon, B{\'e}n{\'e}dicte and Le Guyader, Damien and Jung, Jean-Luc and de Montgolfier, Benjamin and Pascal Jean Lopez and Foulquier, Eric and Bouveret, Laurent and Le Berre, Iwan}
}
@article {8681,
	title = {Phylogeography of the veined squid, Loligo forbesii, in European watersAbstract},
	journal = {Scientific Reports},
	volume = {12},
	year = {2022},
	month = {Jan-12-2022},
	doi = {10.1038/s41598-022-11530-z},
	url = {https://www.nature.com/articles/s41598-022-11530-z},
	author = {G{\"o}pel, Anika and Oesterwind, Daniel and Barrett, Christopher and Cannas, Rita and Caparro, Luis Silva and Carbonara, Pierluigi and Donnaloia, Marilena and Follesa, Maria Cristina and Larivain, Angela and Laptikhovsky, Vladimir and Lefkaditou, Evgenia and Jean-Paul Robin and Santos, Maria Bego{\~n}a and Sobrino, Ignacio and Valeiras, Julio and Valls, Maria and Vieira, Hugo C. and Wieland, Kai and Bastrop, Ralf}
}
@article {9005,
	title = {A possible strong impact of tidal power plant on silver eels{\textquoteright} migration},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {278},
	year = {2022},
	month = {Jan-11-2022},
	pages = {108116},
	abstract = {Very few\&nbsp;tidal power\&nbsp;plants exist in the world. The first one was built in the Rance\&nbsp;estuary\&nbsp;(Brittany, France) in 1966 and the second one in South Korea. However, with the increasing demand in renewable energy, other tidal power plant projects are being studied.<br>
<br>
These power plants are larger than unidirectional fluvial hydropower plants and strongly modify the natural\&nbsp;tidal cycle\&nbsp;in estuarine systems. As such, their effect on megafaunal movements might strongly differ from those caused by unidirectional fluvial hydropower plants and should be specifically considered and studied before the development of similar constructions.<br>
<br>
In this study, an acoustic\&nbsp;telemetry\&nbsp;array was deployed to track 25 silver eels released 16\&nbsp;km upstream of the Rance tidal power dam. Only 1/3 of the tagged eels passed the dam and reached the sea. Data suggested that eels interrupted their migration up to 5\&nbsp;km upstream of the dam. We assume that the noise and tidal disturbance generated by the dam could lead to a disruption of a high proportion of silver eels{\textquoteright} reproductive migration.},
	issn = {02727714},
	doi = {10.1016/j.ecss.2022.108116},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771422003742},
	author = {Trancart, Thomas and Teichert, Nils and Lamoureux, J{\'e}zabel and Gharnit, Elouana and Acou, Anthony and de Oliveira, Eric and Roy, Romain and Feunteun, Eric}
}
@article {8447,
	title = {Pull the trigger: interplay between benthic and pelagic cues driving the early recruitment of a natural bivalve assemblage},
	journal = {Ecosphere},
	volume = {13},
	year = {2022},
	month = {Jan-01-2022},
	abstract = {Larval settlement and recruitment are crucial phases in the benthic-pelagic life cycle of marine benthic invertebrates that controls population dynamic and habitat connectivity. Our study investigated potential triggers driving the settlement of bivalve larvae in a highly dynamic intertidal coarse sand habitat. The early recruitment rate of five dominant bivalve families and abiotic conditions, particulate (\&lt;20 {\textmu}m) organic matter and sediment organic matter, were monitored from May to October 2014. Pelagic particulate organic matter (\&lt;20 {\textmu}m) was dominated by picoplankton throughout the sampling period, with a substantial diatom bloom in spring. Sediment was characterized by fresh organic matter in spring, as suggested by the dominant contribution of polyunsaturated fatty acids, and by a higher proportion of bacterial fatty acid markers during late summer. Different dynamics were also observed in early bivalve recruitment rates, with four different patterns observed over the sampling period. Multiple regression analysis on selected bivalve families showed species-specific responses to trophic settlement triggers. Indeed, the larva recruitment rate of Mytilidae paralleled pelagic concentration of picoeucaryotes, with the peak early recruitment rate occurring in spring. Surprisingly, the early recruitment rate of Mactridae larvae showed a significant relation to bacterial concentration in the surficial sediment at the end of summer. While the Mytilidae results in such a eutrophic system confirmed those of a previous study in oligotrophic lagoons, therefore supporting the trophic settlement trigger hypothesis, more work is needed to understand the potential role of bacteria in the early recruitment of Mactridae. These results highlight for the first-time inter-specific differences in trophic cues that potentially trigger primary settlement in natural bivalve assemblages.},
	keywords = {bacteria, bivalves, Chausey Archipelago, early larval recruitment, fatty acids, picoeucaryotes, trophic settlement trigger},
	issn = {2150-8925},
	doi = {10.1002/ecs2.v13.110.1002/ecs2.3672},
	url = {https://onlinelibrary.wiley.com/toc/21508925/13/1},
	author = {Androuin, Thibault and Barbier, Pierrick and Foret, Martin and Tarik Meziane and Thomas, Mathilde and Archambault, Philippe and Winkler, Gesche and Tremblay, Rejean and Fr{\'e}d{\'e}ric Olivier}
}
@article {8883,
	title = {On the road: Anthropogenic factors drive the invasion risk of a wild solitary bee species},
	journal = {Science of The Total Environment},
	volume = {827},
	year = {2022},
	month = {Jan-06-2022},
	pages = {154246},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2022.154246},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969722013389},
	author = {Lanner, Julia and Dubos, Nicolas and Geslin, Beno{\^\i}t and Leroy, Boris and Hern{\'a}ndez-Castellano, Carlos and Dubai{\'c}, Jovana Bila and Bortolotti, Laura and Calafat, Joan Diaz and {\'C}etkovi{\'c}, Aleksandar and Flaminio, Simone and Le F{\'e}on, Violette and Margalef-Marrase, Jordi and Orr, Michael and Pachinger, B{\"a}rbel and Ruzzier, Enrico and Smagghe, Guy and Tuerlings, Tina and Vereecken, Nicolas J. and Meimberg, Harald}
}
@article {8696,
	title = {Seasonal dynamics of marine protist communities in tidally mixed coastal waters},
	journal = {Molecular Ecology},
	year = {2022},
	month = {Aug-05-2023},
	abstract = {Major seasonal community reorganizations and associated biomass variations are landmarks of plankton ecology. However, the processes of plankton community turnover rates have not been fully elucidated so far. Here, we analyse patterns of planktonic protist community succession in temperate latitudes, based on quantitative taxonomic data from both microscopy counts (cells \&gt; 10 μm) and ribosomal DNA metabarcoding (size fraction \&gt; 3 μm, 18S rRNA gene) from plankton samples collected biweekly over 8 years (2009-2016) at the SOMLIT-Astan station (Roscoff, Western English Channel). Based on morphology, diatoms were clearly the dominating group all year round and over the study period. Metabarcoding uncovered a wider diversity spectrum and revealed the prevalence of Dinophyceae and diatoms but also of Cryptophyta, Chlorophyta, Cercozoa, Syndiniales and Ciliophora in terms of read counts and or richness. The use of morphological and molecular analyses in combination allowed improving the taxonomic resolution and to identify the sequence of the dominant species and OTUs (18S V4 rDNA-derived taxa) that drive annual plankton successions. We detected that some of these dominant OTUs were benthic as a result of the intense tidal mixing typical of the French coasts in the English Channel. Our analysis of the temporal structure of community changes point to a strong seasonality and resilience. The temporal structure of environmental variables (especially Photosynthetic Active Radiation, temperature and macronutrients) and temporal structures generated by species life cycles and or species interactions, are key drivers of the observed cyclic annual plankton turnover.},
	issn = {0962-1083},
	doi = {10.1111/mec.16539},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/mec.16539},
	author = {Caracciolo, Mariarita and Rigaut-Jalabert, Fabienne and Romac, Sarah and Mah{\'e}, Fr{\'e}d{\'e}ric and Forsans, Samuel and Gac, Jean-Philippe and Arsenieff, Laure and Manno, Maxime and Chaffron, Samuel and Cariou, Thierry and Hoebeke, Mark and Bozec, Yann and Goberville, Eric and Le Gall, Florence and Guilloux, Lo{\"\i}c and Baudoux, Anne-Claire and de Vargas, Colomban and Not, Fabrice and Thi{\'e}baut, Eric and Henry, Nicolas and Simon, Nathalie}
}
@article {8440,
	title = {Similar trait structure and vulnerability in pelagic fish faunas on two remote island systems},
	journal = {Marine Biology},
	volume = {169},
	year = {2022},
	month = {Jan-01-2022},
	abstract = {The link between biodiversity and ecosystem functioning has been the topic of considerable research, but it remains unclear how biodiversity decline is compromising ecosystem functionality, particularly in the pelagic realm. Here, we explore how pelagic fish species diversity relates to functional diversity by sampling two locations, which, on the basis of biogeography, environmental conditions and human pressures, were expected to host pronounced differences in species composition and abundances and therefore functionality. Strings of five drifting mid-water Baited Remote Underwater Video Systems were used to survey pelagic vertebrate diversity and abundance in two isolated oceanic island systems, the Malpelo Fauna and Flora Sanctuary{\textemdash}a large, 25-year-old marine protected area{\textemdash}and an unprotected area in Cape Verde. Functional diversity, which offers insight into a community{\textquoteright}s resilience against disturbance, was analysed using six key functional traits of marine fishes. Abundance was recorded as MaxN, the maximum number of individuals of a given species in a single frame during the 2-h deployment time. Cape Verde showed high overall abundance (Total MaxN\&nbsp;873) and low biomass (3559\&nbsp;kg), with a predominance of smaller fishes. Malpelo showed high biomass (7839\&nbsp;kg) but lower abundance (Total MaxN\&nbsp;465), with a predominance of large species. Species and functional diversity were marginally different between locations. Multivariate analysis of species relative abundances showed significant divergence between locations, although community functional traits overlapped strongly, suggesting that both communities share a similar structure and vulnerability. The existence of a common functional {\textquoteleft}backbone{\textquoteright} in diverging species communities across the oceans, under different productivity regimes, and under different protection levels, suggests that although pelagic communities may differ considerably in terms of species composition, this does not translate into a differing functional structure and resilience potential. Whether this vulnerability is a common feature of pelagic communities and how this contrasts with benthic systems warrants further research.},
	issn = {0025-3162},
	doi = {10.1007/s00227-021-03998-6},
	url = {https://link.springer.com/10.1007/s00227-021-03998-6},
	author = {Steinberg, Madeline and Juhel, Jean-Baptiste and Marques, Virginie and Clara P{\'e}ron and Hocd{\'e}, R{\'e}gis and Polanco Fern{\'a}ndez, Andr{\'e}a and Pellissier, Lo{\"\i}c and Villeger, Sebastien and Mouillot, David and Letessier, Tom B.}
}
@article {8833,
	title = {Spatialized ecological network analysis for ecosystem-based management: effects of climate change, marine renewable energy, and fishing on ecosystem functioning in the Bay of SeineAbstract},
	journal = {ICES Journal of Marine Science},
	volume = {79},
	year = {2022},
	month = {Dec-02-2023},
	pages = {1098 - 1112},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsac026},
	url = {https://academic.oup.com/icesjms/article/79/4/1098/6535870},
	author = {Nogues, Quentin and Araignous, Emma and Bourdaud, Pierre and Halouani, Ghassen and Raoux, Aurore and Foucher, Eric and Loc{\textquoteright}h, Fran{\c c}ois Le and Loew-Turbout, Fr{\'e}d{\'e}rique and Ben~Rais~Lasram, Frida and Dauvin, Jean-Claude and Nathalie Niquil}
}
@article {8643,
	title = {SPREADING EUTROPHICATION AND CHANGING  CO2 FLUXES IN THE TROPICAL COASTAL OCEAN:  A FEW LESSONS FROM RIO DE JANEIRO},
	journal = {Arquivos de Ci{\^e}ncias do Mar},
	volume = {55},
	year = {2022},
	month = {Sep-03-2023},
	pages = {461 - 476},
	issn = {0374-5686},
	doi = {10.32360/acmar.v55iEspecial10.32360/acmar.v55iEspecial.78518},
	url = {http://periodicos.ufc.br/arquivosdecienciadomar/issue/view/1159},
	author = {Gwena{\"e}l Abril and C. Cotovicz Jr., Luiz and Nepomuceno, Aguinaldo and Erbas, Tha{\'\i}s and Costa, Suzan and V. Ramos, Vinicius and Moser, Gleyci and Fernandes, Alexandre and Negri, Eduardo and A. Knoppers, Bastiaan and Brandini, Nilva and Machado, Wilson and Bernardes, Marcelo and Vantrepotte, Vincent}
}
@article {8465,
	title = {Transient Receptor Potential-Vanilloid (TRPV1-TRPV4) Channels in the Atlantic Salmon, Salmo salar. A Focus on the Pineal Gland and Melatonin Production},
	journal = {Frontiers in Physiology},
	volume = {22},
	year = {2022},
	month = {01/2022},
	pages = {15},
	type = {original research},
	abstract = {Fish are ectotherm, which rely on the external temperature to regulate their internal body temperature, although some may perform partial endothermy. Together with photoperiod, temperature oscillations, contribute to synchronizing the daily and seasonal variations of fish metabolism, physiology and behavior. Recent studies are shedding light on the mechanisms of temperature sensing and behavioral thermoregulation in fish. In particular, the role of some members of the transient receptor potential channels (TRP) is being gradually unraveled. The present study in the migratory Atlantic salmon, Salmo salar, aims at identifying the tissue distribution and abundance in mRNA corresponding to the TRP of the vanilloid subfamilies, TRPV1 and TRPV4, and at characterizing their putative role in the control of the temperature-dependent modulation of melatonin production{\textemdash}the time-keeping hormone{\textemdash}by the pineal gland. In Salmo salar, TRPV1 and TRPV4 mRNA tissue distribution appeared ubiquitous; mRNA abundance varied as a function of the month investigated. In situ hybridization and immunohistochemistry indicated specific labeling located in the photoreceptor cells of the pineal gland and the retina. Additionally, TRPV analogs modulated the production of melatonin by isolated pineal glands in culture. The TRPV1 agonist induced an inhibitory response at high concentrations, while evoking a bell-shaped response (stimulatory at low, and inhibitory at high, concentrations) when added with an antagonist. The TRPV4 agonist was stimulatory at the highest concentration used. Altogether, the present results agree with the known widespread distribution and role of TRPV1 and TRPV4 channels, and with published data on trout (Oncorhynchus mykiss), leading to suggest these channels mediate the effects of temperature on S. salar pineal melatonin production. We discuss their involvement in controlling the timing of daily and seasonal events in this migratory species, in the context of an increasing warming of water temperatures.},
	keywords = {Atlantic salmon, melatonin, pineal organ, Temperature, transient receptor potential vanilloid (TRPV), TRPV1, TRPV4},
	doi = {10.3389/fphys.2021.784416},
	url = {https://www.frontiersin.org/articles/10.3389/fphys.2021.784416/full?\&utm_source=Email_to_authors_\&utm_medium=Email\&utm_content=T1_11.5e1_author\&utm_campaign=Email_publication\&field=\&journalName=Frontiers_in_Physiology\&id=784416},
	author = {Nisembaum, Laura Gabriela and Loentgen, Guillaume and L{\textquoteright}Honor{\'e}, Thibault and Martin, Patrick and Paulin, Charles-Hubert and Fuent{\`e}s, Michael and Escoubeyrou, Karine and Delgado, Maria Jesus and Besseau, Laurence and Falc{\'o}n, Jack}
}
@article {8426,
	title = {Anthropogenic pressures coincide with Neotropical biodiversity hotspots in a flagship butterfly group},
	journal = {Diversity and Distributions},
	year = {2021},
	month = {12/2021},
	issn = {1366-9516},
	doi = {10.1111/ddi.13455},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/ddi.13455},
	author = {Dor{\'e}, Ma{\"e}l and Willmott, Keith and Leroy, Boris and Chazot, Nicolas and Mallet, James and Freitas, Andr{\'e} V. L. and Hall, Jason P. W. and Lamas, Gerardo and Dasmahapatra, Kanchon K. and Fontaine, Colin and Elias, Marianne}
}
@article {8707,
	title = {Are we ready to track climate-driven shifts in marine species across international boundaries? - A global survey of scientific bottom trawl data},
	journal = {Global Change Biology},
	volume = {27},
	year = {2021},
	month = {Jan-01-2021},
	pages = {220 - 236},
	issn = {1354-1013},
	doi = {10.1111/gcb.v27.210.1111/gcb.15404},
	url = {https://onlinelibrary.wiley.com/toc/13652486/27/2},
	author = {Maureaud, Aurore and Frelat, Romain and P{\'e}cuchet, Laur{\`e}ne and Shackell, Nancy and M{\'e}rigot, Bastien and Pinsky, Malin L. and Amador, Kofi and Anderson, Sean C. and Arkhipkin, Alexander and Auber, Arnaud and Barri, I{\c c}a and Bell, Richard J. and Belmaker, Jonathan and Beukhof, Esther and Camara, Mohamed L. and Guevara-Carrasco, Renato and Choi, Junghwa and Christensen, Helle T. and Conner, Jason and Cubillos, Luis A. and Diadhiou, Hamet D. and Edelist, Dori and Emblemsv{\r a}g, Margrete and Ernst, Billy and Fairweather, Tracey P. and Fock, Heino O. and Friedland, Kevin D. and Garcia, Camilo B. and Gascuel, Didier and Gislason, Henrik and Goren, Menachem and Guitton, J{\'e}r{\^o}me and Jouffre, Didier and Hattab, Tarek and Hidalgo, Manuel and Kathena, Johannes N. and Knuckey, Ian and Kid{\'e}, Sa{\"\i}kou O. and Koen-Alonso, Mariano and Koopman, Matt and Kulik, Vladimir and Le{\'o}n, Jacqueline Palacios and Levitt-Barmats, Ya{\textquoteright}arit and Lindegren, Martin and Llope, Marcos and Massiot-Granier, F{\'e}lix and Masski, Hicham and McLean, Matthew and Meissa, Beyah and M{\'e}rillet, Laur{\`e}ne and Mihneva, Vesselina and Nunoo, Francis K. E. and O{\textquoteright}Driscoll, Richard and O{\textquoteright}Leary, Cecilia A. and Petrova, Elitsa and Ramos, Jorge E. and Refes, Wahid and Rom{\'a}n-Marcote, Esther and Siegstad, Helle and Sobrino, Ignacio and S{\'o}lmundsson, J{\'o}n and Sonin, Oren and Spies, Ingrid and Steingrund, Petur and Stephenson, Fabrice and Stern, Nir and Tserkova, Feriha and Tserpes, Georges and Tzanatos, Evangelos and Rijn, Itai and Zwieten, Paul A. M. and Vasilakopoulos, Paraskevas and Yepsen, Daniela V. and Ziegler, Philippe and Thorson, James}
}
@article {8097,
	title = {Assessment of ecological status of the lagoon of Bora-Bora Island (French Polynesia)},
	journal = {Regional Studies in Marine Science},
	volume = {43},
	year = {2021},
	month = {03/2021},
	pages = {101687},
	issn = {23524855},
	doi = {10.1016/j.rsma.2021.101687},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2352485521000797},
	author = {Lecchini, David and Fr{\'e}d{\'e}ric Bertucci and Schneider, Denis and Berthe, C{\'e}cile and Gache, Camille and Fogg, Lily and Waqalevu, Viliame and Maueau, Tehani and Sturny, Vincent and Bambridge, Tamatoa and Tong Sang, Gaston}
}
@article {7580,
	title = {Bi-decadal variability in physico-biogeochemical characteristics of temperate coastal ecosystems: from large-scale to local drivers},
	journal = {Marine Ecology Progress Series},
	volume = {660},
	year = {2021},
	month = {Feb-18-2021},
	pages = {19-35},
	abstract = {Coastal marine ecosystems, which play a crucial role in the biogeochemical and ecological functioning of the earth system, are highly sensitive to the combined effects of climate and human activities. Because of their location, coastal ecosystems are directly influenced by human activities. Thus, it remains challenging to assess the spatial and temporal scales at which climate influences coastal ecosystems. Twelve sampling stations distributed in eight ecosystems of Western Europe were monitored during two decades for physico-biogeochemical parameters (temperature, salinity, concentrations of dissolved oxygen, nutrients and particulate material). The study encompasses a large diversity of temperate coastal ecosystems regarding geomorphology, trophic status, tidal regime, river influence, turbidity, and so on. Time-series analysis coupled with standardised 3-mode Principal Component Analyses, Partial Triadic Analyses and correlations were used to assess bi-decadal variability and ecosystems trajectories, and to detect the large-scale, regional and local drivers. Overall results highlight two abrupt changes in 2001 and 2005. The\&nbsp;bi-decadal changes are related to changes in large-scale and regional climate; detected through proxies of temperature and atmospheric\&nbsp;circulation, as well as through river\&nbsp;discharge. Ecosystem trajectories usually move towards an increase in temperature, salinity and/or a decrease in chlorophyll-a, nutrients and particulate matter. However, the magnitude of change, the year-to-year variability and the sensitivity to the 2001 and 2005 changes vary among the ecosystems. This study highlights the need to perform long-term time series and combining data sets as well as multi-ecosystem and local studies to better understand long-term variability of coastal ecosystems and its associated drivers.},
	issn = {0171-8630},
	doi = {10.3354/meps13577},
	url = {https://doi.org/10.3354/meps13577},
	author = {Lheureux, Arnaud and Savoye, Nicolas and Del Amo, Yolanda and Goberville, Eric and Bozec, Yann and Elsa Breton and Conan, Pascal and L{\textquoteright}Helguen, St{\'e}phane and Mousseau, Laure and Raimbault, Patrick and Rimelin-Maury, Peggy and Seuront, Laurent and Vuillemin, Renaud and Caparros, Jocelyne and Cariou, Thierry and Cordier, MA and Corre, Anne-Marie and Costes, Laurence and Crispi, O. and Muriel Crouvoisier and de Latour, HdL and Derriennic, Herv{\'e} and Devesa, J{\'e}r{\'e}my and Durozier, Ma{\"\i}a and Ferreira, Sophie and Garcia, Nicole and Emilie Grossteffan and Gueux, Aurore and Lafont, M and Lagadec, V{\'e}ronique and Lecuyer, Eric and Leroux, C{\'e}dric and Mac{\'e}, Eric and Maria, E and Mornet, L and Antoine Nowaczyk and Parra, M and Petit, Fabienne and David, V}
}
@article {8990,
	title = {Born With Bristles: New Insights on the K{\"o}lliker{\textquoteright}s Organs of Octopus Skin},
	journal = {Frontiers in Marine Science},
	volume = {8},
	year = {2021},
	doi = {10.3389/fmars.2021.645738},
	url = {https://hal.archives-ouvertes.fr/hal-03326946},
	author = {Villanueva, Roger and Coll-Llad{\'o}, Montserrat and Laure Bonnaud-Ponticelli and Carrasco, Sergio and Escolar, Oscar and Fern{\'a}ndez-{\'A}lvarez, Fernando {\'A}. and Gleadall, Ian and Nabhitabhata, Jaruwat and Ortiz, Nicol{\'a}s and Rosas, Carlos and S{\'a}nchez, Pilar and Voight, Janet and Swoger, Jim}
}
@article {8049,
	title = {Contribution of toothfish depredated on fishing lines to the energy intake of killer whales off the Crozet Islands: a multi-scale bioenergetic approach},
	journal = {Marine Ecology Progress Series},
	volume = {668},
	year = {2021},
	month = {Dec-06-2022},
	pages = {149 - 161},
	abstract = {Fisheries modify prey availability for marine predators by extracting resources but also by providing them with new feeding opportunities. Among these, depredation, which occurs when predators feed on fish caught on fishing gear, is a behavior developed by many species as a way to acquire food through limited foraging effort. However, the extent to which depredated resources from fisheries contribute to the energetic requirements and affect the demography of depredating individuals is unknown. We investigated the contribution of Patagonian toothfish Dissostichus eleginoides depredated on longlines to the energetic requirements of killer whales Orcinus orca around the Crozet Islands (southern Indian Ocean) over the period 2007-2018. Our results indicate that during days when depredation occurred, depredating individuals fulfilled on average 94.1\% of their daily energetic requirements with depredated toothfish. However, the contribution varied from 1.2 to 13.3\% of the monthly energetic requirements and from 2.4 to 8.8\% of the yearly energetic requirements of the total population. Together, these findings suggest that intake of depredated toothfish can be substantial at a fine scale (daily and individually), potentially leading to temporary provisioning effects and changes in predation pressures. These effects become minor (\&lt;10\%), however, when considering the full population over a whole year. The contribution of depredated fish to the annual energetic requirements of the population has increased in recent years, likely due to larger fishing quotas and greater opportunities for whales to depredate, which stresses the importance of accounting for depredation in ecosystem-based management of fishing activity.},
	issn = {0171-8630},
	doi = {10.3354/meps13725},
	url = {https://www.int-res.com/abstracts/meps/v668/p149-161/},
	author = {Faure, Johanna and Clara P{\'e}ron and Nicolas Gasco and Massiot-Granier, F{\'e}lix and Spitz, J and Guinet, C and Tixier, P}
}
@article {7700,
	title = {Dietary taurine improves vision in different age gilthead sea bream (Sparus aurata) larvae potentially contributing to increased prey hunting success and growth},
	journal = {Aquaculture},
	volume = {533},
	year = {2021},
	month = {Jan-02-2021},
	pages = {736129},
	issn = {00448486},
	doi = {10.1016/j.aquaculture.2020.736129},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0044848620338357},
	author = {Gaon, A. and Nixon, O. and Tandler, A. and Falcon, J. and Besseau, L. and Escande, M. and El Sadin, S. and Allon, G. and Koven, W.}
}
@article {8656,
	title = {Economic costs of biological invasions within North America},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {07/2021},
	pages = {485-510},
	author = {Crystal-Ornelas, Rob and Hudgins, Emma J and Cuthbert, Ross N. and Haubrock, Phillip J. and Fantle-Lepczyk, J and Angulo, Elena and Kramer, Andrew M. and Ballesteros-Mejia, Liliana and Leroy, Boris and Leung, Brian and L{\'o}pez-L{\'o}pez, E and Diagne, Christophe and Courchamp, Franck}
}
@article {7883,
	title = {Effects of Melatonin on Anterior Pituitary Plasticity: A Comparison Between Mammals and Teleosts},
	journal = {Frontiers in Endocrinology},
	volume = {11},
	year = {2021},
	month = {Nov-01-2021},
	abstract = {Melatonin is a key hormone involved in the photoperiodic signaling pathway. In both teleosts and mammals, melatonin produced in the pineal gland at night is released into the blood and cerebrospinal fluid, providing rhythmic information to the whole organism. Melatonin acts\&nbsp;via\&nbsp;specific receptors, allowing the synchronization of daily and annual physiological rhythms to environmental conditions. The pituitary gland, which produces several hormones involved in a variety of physiological processes such as growth, metabolism, stress and reproduction, is an important target of melatonin. Melatonin modulates pituitary cellular activities, adjusting the synthesis and release of the different pituitary hormones to the functional demands, which changes during the day, seasons and life stages. It is, however, not always clear whether melatonin acts directly or indirectly on the pituitary. Indeed, melatonin also acts both upstream, on brain centers that control the pituitary hormone production and release, as well as downstream, on the tissues targeted by the pituitary hormones, which provide positive and negative feedback to the pituitary gland. In this review, we describe the known pathways through which melatonin modulates anterior pituitary hormonal production, distinguishing indirect effects mediated by brain centers from direct effects on the anterior pituitary. We also highlight similarities and differences between teleosts and mammals, drawing attention to knowledge gaps, and suggesting aims for future research.},
	doi = {10.3389/fendo.2020.605111},
	url = {https://www.frontiersin.org/articles/10.3389/fendo.2020.605111/full},
	author = {Ciani, Elia and Haug, Trude M. and Maugars, Gersende and Weltzien, Finn-Arne and Falc{\'o}n, Jack and Fontaine, Romain}
}
@article {8466,
	title = {Estimating ecotoxicological effects of chemicals on tropical reef-building corals; a systematic review protocol},
	journal = {Environmental Evidence},
	volume = {10},
	year = {2021},
	month = {Dec-11-2021},
	doi = {10.1186/s13750-021-00250-y},
	url = {https://environmentalevidencejournal.biomedcentral.com/articles/10.1186/s13750-021-00250-y},
	author = {Ou{\'e}draogo, Dakis-Yaoba and Perceval, Olivier and Ferrier-Pages, Christine and Domart-Coulon, Isabelle and H{\'e}douin, Laetitia and Burga, Karen and Mireille M.M. Guillaume and Calvayrac, Christophe and Castelin, Magalie and Reyjol, Yorick and Sordello, Romain}
}
@article {7412,
	title = {European small pelagic fish distribution under global change scenarios},
	journal = {Fish and Fisheries},
	volume = {22},
	year = {2021},
	month = {10/2020},
	pages = {212-225},
	abstract = {The spectre of increasing impacts on exploited fish stocks in consequence of warmer climate conditions has become a major concern over the last decades. It is now imperative to improve the way we project the effects of future climate warming on fisheries. While estimating future climate-induced changes in fish distribution is an important contribution to sustainable resource management, the impacts on European small pelagic fish{\textemdash}representing over 50\% of the landings in the Mediterranean and Black Sea between 2000 and 2013{\textemdash}are yet largely understudied. Here, we investigated potential changes in the spatial distribution of seven of the most harvested small pelagic fish species in Europe under several climate change scenarios over the 21st century. For each species, we considered eight Species Distribution Models (SDMs), five General Circulation Models (GCMs) and three emission scenarios (the IPCC Representative Concentration Pathways; RCPs). Under all scenarios, our results revealed that the environmental suitability for most of the seven species may strongly decrease in the Mediterranean and western North Sea while increasing in the Black and Baltic Seas. This potential northward range expansion of species is supported by a strong convergence among projections and a low variability between RCPs. Under the most pessimistic scenario (RCP8.5), climate-related local extinctions were expected in the south-eastern Mediterranean basin. Our results highlight that a multi-SDM, multi-GCM, multi-RCP approach is needed to produce more robust ecological scenarios of changes in exploited fish stocks in order to better anticipate the economic and social consequences of global climate change.},
	issn = {1467-2960},
	doi = {10.1111/faf.12515},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/faf.12515},
	author = {Schickele, Alexandre and Goberville, Eric and Leroy, Boris and Gr{\'e}gory Beaugrand and Hattab, Tarek and Patrice Francour and Virginie Raybaud}
}
@article {8200,
	title = {Evidence on the impacts of chemicals arising from human activity on tropical reef-building corals; a systematic map},
	journal = {Environmental Evidence},
	volume = {10},
	year = {2021},
	month = {Sep-22-2021},
	doi = {10.1186/s13750-021-00237-9},
	url = {https://environmentalevidencejournal.biomedcentral.com/articles/10.1186/s13750-021-00237-9},
	author = {Ou{\'e}draogo, Dakis-Yaoba and Delaunay, Mathilde and Sordello, Romain and H{\'e}douin, L. and Castelin, Magalie and Perceval, Olivier and Domart-Coulon, Isabelle and Burga, Karen and Ferrier-Pages, Christine and Multon, Romane and Mireille M.M. Guillaume and L{\'e}ger, Cl{\'e}ment and Calvayrac, Christophe and Joannot, Pascale and Reyjol, Yorick}
}
@article {8111,
	title = {First use of acoustic calls to distinguish cryptic members of a fish species complex},
	journal = {Zoological Journal of the Linnean Society},
	year = {2021},
	month = {08/2021},
	doi = {10.1093/zoolinnean/zlab056},
	url = {https://doi.org/10.1093/zoolinnean/zlab056},
	author = {Parmentier, Eric and Scalbert, Robin and Raick, Xavier and Gache, Camille and Fr{\'e}d{\'e}rich, Bruno and Fr{\'e}d{\'e}ric Bertucci and Lecchini, David}
}
@article {8349,
	title = {Four-Year Temporal Study of an Intertidal Artificial Structure in the English Channel},
	journal = {Journal of Marine Science and Engineering},
	volume = {9},
	year = {2021},
	month = {Jan-11-2021},
	pages = {1174},
	doi = {10.3390/jmse9111174},
	url = {https://www.mdpi.com/2077-1312/9/11/1174},
	author = {Dauvin, Jean-Claude and Deloor, Ma{\"e}l and Pezy, Jean-Philippe and Raoux, Aurore and Pascal Claquin and Foveau, Aur{\'e}lie}
}
@article {8392,
	title = {Global systematic diversity, range distributions, conservation and taxonomic assessments of graylings (Teleostei: Salmonidae; Thymallus spp.)Abstract},
	journal = {Organisms Diversity \& Evolution},
	volume = {21},
	year = {2021},
	month = {Jan-03-2021},
	pages = {25 - 42},
	issn = {1439-6092},
	doi = {10.1007/s13127-020-00468-7},
	url = {http://link.springer.com/10.1007/s13127-020-00468-7},
	author = {Weiss, Steven J. and Gon{\c c}alves, Duarte V. and Secci-Petretto, Giulia and Englmaier, Gernot K. and Gomes-Dos-Santos, Andr{\'e} and Denys, Ga{\"e}l and Persat, Henri and Antonov, Alexander and Hahn, Christoph and Taylor, Eric B. and Froufe, Elsa}
}
@article {7823,
	title = {Influence of environmental conditions on the distribution of burrows of the mud crab, Scylla serrata, in a fringing mangrove ecosystem},
	journal = {Regional Studies in Marine Science},
	volume = {43},
	year = {2021},
	month = {Jan-03-2021},
	pages = {101684},
	abstract = {Mud crab, Scylla serrata, is a common mangrove species in the Indian Ocean. Over the last decades, fishing pressure has greatly increased especially in Madagascar. Therefore, improving the knowledge of mud crab biology and ecology is crucial to guide conservation and restoration plans. This study aimed at describing the distribution of burrows of the mud crab in a mangrove in southwestern Madagascar. Burrows fulfill an essential functional role by limiting the exposure of crab to environmental stress, such as desiccation during low tide, and predation. A total of 140 burrows were observed and available conditions were described at 168 random sampling points at low tide in three different mangrove zones, during the dry season (July 2014). Twelve environmental factors were recorded to reflect the position within the mangrove, the substrate composition and the surrounding floristic structure. A multivariate ordination analysis highlighted an overall association between burrows and specific habitat conditions. Boosted regression trees then indicated that the burrows distribution was predominantly explained by the avoidance of hard substrates. The occurrence of burrows was positively related to the upper intertidal zone of the mangrove where the water level was below 100 cm. Although the tree density had a positive effect, the occurrence of burrows was higher for low percentage of shade (\&lt;40\%). These results provide insight for identifying mangrove areas that have an essential functional role for the conservation of mud crab populations.},
	keywords = {Crustacean, Floristic structure, Habitat conditions, Mangrove crab, Substratum composition},
	issn = {23524855},
	doi = {10.1016/j.rsma.2021.101684},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2352485521000761},
	author = {Leoville, Alexandre and Lagarde, Rapha{\"e}l and Grondin, Henri and Faivre, La{\"e}titia and Rasoanirina, Elisa and Teichert, Nils}
}
@article {9129,
	title = {Interactions between Filter-Feeding Bivalves and Toxic Diatoms: Influence on the Feeding Behavior of Crassostrea gigas and Pecten maximus and on Toxin Production by Pseudo-nitzschia},
	journal = {Toxins},
	volume = {13},
	year = {2021},
	month = {Jan-08-2021},
	pages = {577},
	doi = {10.3390/toxins13080577},
	url = {https://www.mdpi.com/2072-6651/13/8/577},
	author = {Sauvey, Aurore and Denis, Fran{\c c}oise and H{\'e}garet, H{\'e}l{\`e}ne and Le Roy, Bertrand and Lelong, Christophe and Jolly, Orianne and Pavie, Marie and Juliette Fauchot}
}
@article {8454,
	title = {Isolation-by-distance and male-biased dispersal at a fine spatial scale: a study of the common European adder (Vipera berus) in a rural landscape},
	journal = {Conservation Genetics},
	volume = {22},
	year = {2021},
	month = {Jan-10-2021},
	pages = {823 - 837},
	issn = {1566-0621},
	doi = {10.1007/s10592-021-01365-y},
	url = {https://link.springer.com/10.1007/s10592-021-01365-y},
	author = {Fran{\c c}ois, Donatien and Ursenbacher, Sylvain and Boissinot, Alexandre and Fr{\'e}d{\'e}ric Ysnel and Lourdais, Olivier}
}
@article {8741,
	title = {Kakila database: Towards a FAIR community approved database of cetacean presence in the waters of the Guadeloupe archipelago based on citizen science},
	journal = {Biodiversity Data Journal},
	volume = {9},
	year = {2021},
	month = {Oct-07-2022},
	issn = {1314-2836},
	doi = {10.3897/BDJ.9.e69022},
	url = {https://bdj.pensoft.net/article/69022/},
	author = {Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne and Le Bras, Yvan and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne and Le Bras, Yvan and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne and Le Bras, Yvan and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne and Le Bras, Yvan and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne}
}
@article {8094,
	title = {Long term relationship between farming damselfish, predators, competitors and benthic habitat on coral reefs of Moorea Island},
	journal = {Scientific Reports},
	volume = {11},
	year = {2021},
	month = {07/2021},
	pages = {14548},
	doi = {10.1038/s41598-021-94010-0},
	url = {http://www.nature.com/articles/s41598-021-94010-0},
	author = {Feeney, William E. and Fr{\'e}d{\'e}ric Bertucci and Gairin, Emma and Siu, Gilles and Waqalevu, Viliame and Antoine, Morgan and Lison de Loma, Thierry and Planes, Serge and Galzin, Ren{\'e} and Lecchini, David}
}
@article {8095,
	title = {Marine biodiversity of a pristine coral reef in French Polynesia},
	journal = {Island Studies Journal},
	volume = {16},
	year = {2021},
	month = {Jan-05-2021},
	pages = {292 - 307},
	doi = {10.24043/isj10.24043/isj.16.110.24043/isj.150},
	url = {https://www.islandstudies.ca/},
	author = {Lecchini, David and Fr{\'e}d{\'e}ric Bertucci and Fogg, Lily and Gache, Camille and Ung, Pascal and Lacube, Yann and Berthe, C{\'e}cile and Waqalevu, Viliame and Siu, Alain and Bambridge, Tamatoa}
}
@article {7884,
	title = {Melatonin and osmoregulation in fish: A focus on Atlantic salmon Salmo salar smoltification},
	journal = {Journal of Neuroendocrinology},
	volume = {33},
	year = {2021},
	month = {Jan-03-2021},
	abstract = {Part of the life cycle of several fish species includes important salinity changes, as is the case for the sea bass (Dicentrarchus labrax) or the Atlantic salmon (Salmo salar).\&nbsp;Salmo\&nbsp;salar\&nbsp;juveniles migrate downstream from their spawning sites to reach seawater, where they grow and become sexually mature. The process of preparation enabling juveniles to migrate downstream and physiologically adapt to seawater is called smoltification. Daily and seasonal variations of photoperiod and temperature play a role in defining the timing of smoltification, which may take weeks to months, depending on the river length and latitude. Smoltification is characterised by a series of biochemical, physiological and behavioural changes within the neuroendocrine axis. This review discusses the current knowledge and gaps related to the neuroendocrine mechanisms that mediate the effects of light and temperature on smoltification. Studies performed in\&nbsp;S.\&nbsp;salar\&nbsp;and other salmonids, as well as in other species undergoing important salinity changes, are reviewed, and a particular emphasis is given to the pineal hormone melatonin and its possible role in osmoregulation. The daily and annual variations of plasma melatonin levels reflect corresponding changes in external photoperiod and temperature, which suggests that the hormonal time-keeper melatonin might contribute to controlling smoltification. Here, we review studies on (i) the impact of pinealectomy and/or melatonin administration on smoltification; (ii) melatonin interactions with hormones involved in osmoregulation (e.g., prolactin, growth hormone and cortisol); (iii) the presence of melatonin receptors in tissues involved in osmoregulation; and (iv) the impacts of salinity changes on melatonin receptors and circulating melatonin levels. Altogether, these studies show evidence indicating that melatonin interacts with the neuroendocrine pathways controlling smoltification, although more information is needed to clearly decipher its mechanisms of action.},
	issn = {0953-8194},
	doi = { https://doi.org/10.1111/jne.12955},
	url = {https://onlinelibrary.wiley.com/toc/13652826/33/3},
	author = {Nisembaum, Laura Gabriela and Martin, Patrick and Lecomte, Fr{\'e}d{\'e}ric and Falc{\'o}n, Jack}
}
@article {8837,
	title = {The Merits of Loop Analysis for the Qualitative Modeling of Social-Ecological Systems in Presence of Offshore Wind Farms},
	journal = {Frontiers in Ecology and Evolution},
	volume = {9},
	year = {2021},
	month = {May-02-2022},
	doi = {10.3389/fevo.2021.635798},
	url = {https://www.frontiersin.org/articles/10.3389/fevo.2021.635798/full},
	author = {Nathalie Niquil and Scotti, Marco and Fofack-Garcia, Rhoda and Haraldsson, Matilda and Thermes, Maud and Raoux, Aurore and Le Loc{\textquoteright}h, Francois and Maz{\'e}, Camille}
}
@article {7996,
	title = {Molecular and physiological characterization of a crustacean cardioactive signaling system in a lophotrochozoan - the Pacific oyster (Crassostrea gigas): a role in reproduction and salinity acclimation.},
	journal = {J Exp Biol},
	volume = {224},
	year = {2021},
	month = {2021 May 15},
	abstract = {<p>The crustacean cardioactive peptide (CCAP) is an important neuropeptide involved in the regulation of a variety of physiological processes in arthropods. Although this family of peptides has an ancestral origin, its function remains poorly understood among protostome species - apart from arthropods. We functionally characterized three G protein-coupled receptors (GPCRs) in the oyster Crassostrea gigas, phylogenetically related to ecdysozoan CCAP receptors (CCAPRs) and to chordate neuropeptide S receptors (NPSRs). Cragi-CCAPR1 and Cragi-CCAPR2 were specifically activated by the Cragi-CCAP1 and Cragi-CCAP2 peptides, respectively, both derived from the same CCAP precursor. In contrast, Cragi-CCAPR3 was only partially activated by CCAP1 and CCAP2 at high concentrations. The Cragi-CCAPR1 and Cragi-CCAPR2 genes were expressed in various adult tissues. They are both most expressed in the gills, while Cragi-CCAPR3 is mainly expressed in the visceral ganglia (VG). Cragi-CCAP precursor transcripts are higher in the VG, the labial palps and the gills. Receptor and ligand-encoding transcripts are more abundantly expressed in the gonads in the first stages of gametogenesis, while the Cragi-CCAP precursor is upregulated in the VG in the last stages of gametogenesis. This suggests a role of the CCAP signaling system in the regulation of reproductive processes. A role in water and ionic regulation is also supported considering the differential expression of the CCAP signaling components in oysters exposed to brackish water.</p>
},
	issn = {1477-9145},
	doi = {10.1242/jeb.241588},
	author = {R{\'e}alis-Doyelle, Emilie and Julie Schwartz and Marie-Pierre Dubos and Pascal Favrel}
}
@article {8347,
	title = {Multi-trophic markers illuminate the understanding of the functioning of a remote, low coral cover Marquesan coral reef food web},
	journal = {Scientific Reports},
	volume = {11},
	year = {2021},
	month = {Jan-12-2021},
	abstract = {We studied the food web structure and functioning of a coral reef ecosystem in the Marquesas Islands, French Polynesia, characterized by low coral cover, high sea surface temperature and meso- to eutrophic waters. The Marquesas constitute a relevant ecosystem to understand the functioning of low diversity reefs that are also subject to global change. A multi-tracer assessment of organic matter pathways was run to delineate ecosystem functioning, using analysis of fatty acids, bulk and compound specific stable isotope analysis and stable isotopes mixing models. Macroalgae and phytoplankton were the two major food sources fueling this food web with, however, some marked seasonal variations. Specifically, zooplankton relied on phytoplankton-derived organic matter and herbivorous fishes on macroalgae-derived organic matter to a much higher extent in summer than in winter (~ 75\%\&nbsp;vs. ~ 15\%, and ~ 70 to 75\%\&nbsp;vs. ~ 5 to 15\%, respectively) . Despite remarkably high δ15N values for all trophic compartments, likely due to local dynamics in the nitrogen stock, trophic levels of consumers were similar to those of other coral reef ecosystems. These findings shed light on the functioning of low coral cover systems, which are expected to expand worldwide under global change.},
	doi = {10.1038/s41598-021-00348-w},
	url = {https://www.nature.com/articles/s41598-021-00348-w},
	author = {Fey, Pauline and Parravicini, Valeriano and B{\u a}naru, Daniela and Dierking, Jan and Galzin, Ren{\'e} and Lebreton, Beno{\^\i}t and Tarik Meziane and Polunin, Nicholas V. C. and Zubia, Mayalen and Letourneur, Yves}
}
@article {8117,
	title = {A Novel Dop2/Invertebrate-Type Dopamine Signaling System Potentially Mediates Stress, Female Reproduction, and Early Development in the Pacific Oyster (Crassostrea gigas)},
	journal = {Marine Biotechnology},
	year = {2021},
	month = {Jul-08-2021},
	issn = {1436-2228},
	doi = {10.1007/s10126-021-10052-5},
	url = {https://link.springer.com/10.1007/s10126-021-10052-5},
	author = {Schwartz, Julie and R{\'e}alis-Doyelle, Emilie and Le Franc, Lorane and Favrel, Pascal}
}
@article {8059,
	title = {Pelagic habitats under the MSFD D1: scientific advice of policy relevance : recommendations to frame problems and solutions for the pelagic habitats{\textquoteright} assessment.},
	year = {2021},
	institution = {Publications Office of the European Union},
	abstract = {Pelagic habitats are a policy priority below Descriptor 1 (Biodiversity) of the Marine Strategy Framework Directive (MSFD). They are addressed under the D1C6 criterion, stating {\textquotedblleft}the condition of the habitat type, including its biotic and abiotic structure and its functions{\textellipsis}, is not adversely affected due to anthropogenic pressures{\textquotedblright}. The evaluation of pelagic habitats status is challenged by the functional and structural characteristics of pelagic habitat diversity and processes. To date, pelagic habitats assessments are lacking in common criteria and methodologies that characterize the habitat while accounting for the effects of anthropogenic pressures to achieve the Good Environmental Status (GES). It is therefore necessary to prioritise communication between scientific and policy communities and frame pelagic research to agree on common methods and approaches at regional or EU scale. This is key for achieving harmonised and comparable pelagic assessments for the MSFD. This report summarizes the outcomes on the assessment workflow of pelagic habitats of the JRC {\textquotedblleft}MSFD pelagic habitats{\textquotedblright} workshop (9th and 10th March 2021), and the need for coordinated evaluations of the scientific challenges of policy relevance. Recommendations on the MSFD implementation of D1C6, that were generated from the experts during the workshop, will be communicated to the MSFD policy groups and the EU Member States competent authorities to support future harmonised assessment of pelagic habitats.},
	doi = {10.2760/081368},
	url = {https://data.europa.eu/doi/10.2760/081368},
	author = {Magliozzi, Chiara and Druon, Jean-Noel and Palialexis, Andreas and Aguzzi, Laura and Alexande, Brittany and Antoniadis, Konstantinos and Artigas, Luis Felipe and Azzellino, Arianna and Bisinicu, Elena and Boicenco, Laura and Bojanic, Natalia and Borrello, Patrizia and Boschetti, Simona and Carmo, Vanda and Cervantes, Pablo and Coll, Marta and Curmi, Marta and Del Amo, Yolanda and Dutz, Joerg and Franc{\'e}, Janja and Garces, Esther and Gea, Guillermo and Giannakourou, Antonia and Goberville, Eric and Goffart, Anne and Gomes Pereira, Jose Nuno and Gonzalez-Quiros, Rafael and Gorokhova, Elena and Guglielmo, Letterio and Pierre H{\'e}laou{\"e}t and Henriques, Filipe and Heyden, Birgit and Jaanus, Andres and Jakobsen, Hans and Johansen, Marie and Jurgensone, Iveta and Korpinen, Samuli and Kremp, Anke and Kuosa, Harri and Labayle, Lucille and Lazar, Luminita and Abigail McQuatters-Gollop and Nincevic, Zivana and Pagou, Popi and Penna, Antonella and Pettersson, Karin and Ruiter, Hans and Skejic, Sanda and Spada, Emanuela and Spinu, Alina and Tew-Kai, Emilie and Totti, Cecilia and Tunesi, Leonardo and Vadrucci, Maria Rosaria and Valavanis, Vasilis and Varkitzi, Ioanna and Vasiliades, Lavrendios and Veldeki, Georgia and Vidjak, Olja and Vincent, Doroth{\'e}e and Zervoudaki, Soultana}
}
@article {8083,
	title = {Photoperiodic regulation of pituitary thyroid-stimulating hormone and brain deiodinase in Atlantic salmon},
	journal = {Molecular and Cellular Endocrinology},
	volume = {519},
	year = {2021},
	month = {Jan-01-2021},
	pages = {111056},
	issn = {03037207},
	doi = {10.1016/j.mce.2020.111056},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0303720720303580},
	author = {Irachi, Shotaro and Hall, Daniel J. and Fleming, Mitchell S. and Maugars, Gersende and Bj{\"o}rnsson, Bj{\"o}rn Thrandur and Sylvie Dufour and Uchida, Katsuhisa and McCormick, Stephen D.}
}
@article {8430,
	title = {Pituitary Hormones mRNA Abundance in the Mediterranean Sea Bass Dicentrarchus labrax: Seasonal Rhythms, Effects of Melatonin and Water Salinity},
	journal = {Frontiers in Physiology},
	volume = {12},
	year = {2021},
	month = {12/15/2021},
	pages = {774975},
	type = {Research article},
	abstract = {In fish, most hormonal productions of the pituitary gland display daily and/or seasonal<br>
rhythmic patterns under control by upstream regulators, including internal biological<br>
clocks. The pineal hormone melatonin, one main output of the clocks, acts at different<br>
levels of the neuroendocrine axis. Melatonin rhythmic production is synchronized mainly<br>
by photoperiod and temperature. Here we aimed at better understanding the role<br>
melatonin plays in regulating the pituitary hormonal productions in a species of scientific<br>
and economical interest, the euryhaline European sea bass Dicentrarchus labrax. We<br>
investigated the seasonal variations in mRNA abundance of pituitary hormones in two<br>
groups of fish raised one in sea water (SW fish), and one in brackish water (BW fish). The<br>
mRNA abundance of three melatonin receptors was also studied in the SW fish. Finally,<br>
we investigated the in vitro effects of melatonin or analogs on the mRNA abundance of<br>
pituitary hormones at two times of the year and after adaptation to different salinities.<br>
We found that (1) the reproductive hormones displayed similar mRNA seasonal profiles<br>
regardless of the fish origin, while (2) the other hormones exhibited different patterns<br>
in the SW vs. the BW fish. (3) The melatonin receptors mRNA abundance displayed<br>
seasonal variations in the SW fish. (4) Melatonin affected mRNA abundance of most<br>
of the pituitary hormones in vitro; (5) the responses to melatonin depended on its<br>
concentration, the month investigated and the salinity at which the fish were previously<br>
adapted. Our results suggest that the productions of the pituitary are a response to<br>
multiple factors from internal and external origin including melatonin. The variety of the<br>
responses described might reflect a high plasticity of the pituitary in a fish that faces<br>
multiple external conditions along its life characterized by marked daily and seasonal<br>
changes in photoperiod, temperature and salinity.},
	keywords = {annual variations, hormones, melatonin, photoperiod, pituitary, salinity, sea bass},
	doi = {10.3389/fphys.2021.774975},
	url = {https://www.frontiersin.org/articles/10.3389/fphys.2021.774975/full?\&utm_source=Email_to_authors_\&utm_medium=Email\&utm_content=T1_11.5e1_author\&utm_campaign=Email_publication\&field=\&journalName=Frontiers_in_Physiology\&id=774975},
	author = {Jack Falcon},
	editor = {Maria-Jesus Herrero and Laura-Gabriela Nisembaum}
}
@article {8145,
	title = {Revisiting species and areas of interest for conserving global mammalian phylogenetic diversity},
	journal = {Nature Communications},
	volume = {12},
	year = {2021},
	month = {Jan-12-2021},
	doi = {10.1038/s41467-021-23861-y},
	url = {http://www.nature.com/articles/s41467-021-23861-y},
	author = {Robuchon, Marine and Pavoine, Sandrine and V{\'e}ron, Simon and Delli, Giacomo and Faith, Daniel P. and Mandrici, Andrea and Pellens, Roseli and Dubois, Gr{\'e}goire and Leroy, Boris}
}
@article {8389,
	title = {The rise and fall of the ancient northern pike master sex-determining gene},
	journal = {eLife},
	volume = {10},
	year = {2021},
	month = {Apr-01-2023},
	doi = {10.7554/eLife.62858},
	url = {https://elifesciences.org/articles/62858},
	author = {Pan, Qiaowei and Feron, Romain and Jouanno, Elodie and Darras, Hugo and Herpin, Amaury and Koop, Ben and Rondeau, Eric and Goetz, Frederick W and Larson, Wesley A and Bernatchez, Louis and Tringali, Mike and Curran, Stephen S and Saillant, Eric and Denys, Ga{\"e}l and von Hippel, Frank A and Chen, Songlin and L{\'o}pez, J Andr{\'e}s and Verreycken, Hugo and Ocalewicz, Konrad and Guyomard, Rene and Eche, Camille and Lluch, Jerome and Roques, Celine and Hu, Hongxia and Tabor, Roger and DeHaan, Patrick and Nichols, Krista M and Journot, Laurent and Parrinello, Hugues and Klopp, Christophe and Interesova, Elena A and Trifonov, Vladimir and Schartl, Manfred and Postlethwait, John and Guiguen, Yann}
}
@article {8150,
	title = {Seasonal Variations in the Biodiversity, Ecological Strategy, and Specialization of Diatoms and Copepods in a Coastal System With Phaeocystis Blooms: The Key Role of Trait Trade-Offs},
	journal = {Frontiers in Marine Science},
	volume = {8},
	year = {2021},
	month = {09/2021},
	pages = {1178},
	abstract = {Although eutrophication induced by anthropogenic nutrient enrichment is a driver of shifts in community composition and eventually a threat to marine biodiversity, the causes and consequences on ecosystem functioning remain greatly unknown. In this study, by applying a trait-based approach and measuring niche breadth of diatoms and copepods, the drivers and underlying mechanisms of the seasonal species succession of these ecological communities in a coastal system dominated in spring by\&nbsp;Phaeocystis\&nbsp;blooms were explored. It is suggested that the seasonal succession of diatoms and copepods is the result of several trade-offs among functional traits that are controlled by the seasonal abiotic and biotic pressure encountered by the plankton communities. The results of this study highlight that a trade-off between competition and predator, i.e., weak competitors are better protected against predation, plays an important role in promoting plankton species richness and triggers the\&nbsp;Phaeocystis\&nbsp;bloom. As often observed in eutrophicated ecosystems, only the biotic homogenization of the copepod community and the shift in the diet of copepods toward\&nbsp;Phaeocystis\&nbsp;detrital materials have been detected during the\&nbsp;Phaeocystis\&nbsp;bloom. The diatom and copepod communities respond synchronously to fluctuating resources and biotic conditions by successively selecting species with specific traits. This study confirms the key role of competition and predation in controlling annual plankton succession.},
	issn = {2296-7745},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2021.656300/full},
	author = {Breton, Elsa and Christaki, Urania and Benoit Sautour and Demonio, Oscar and Skouroliakou, Dimitra-Ioli and Gr{\'e}gory Beaugrand and Seuront, Laurent and Kl{\'e}parski, Lo{\"\i}ck and Poquet, Adrien and Nowaczyk, Antoine and Muriel Crouvoisier and Ferreira, Sophie and Pecqueur, David and Salmeron, Christophe and Brylinski, Jean-Michel and Lheureux, Arnaud and Goberville, Eric}
}
@article {8459,
	title = {Small- and large-scale processes including anthropogenic pressures as drivers of gastropod communities in the NE Atlantic coast: A citizen science based approach},
	journal = {Science of The Total Environment},
	year = {2021},
	month = {Jan-11-2021},
	pages = {151600},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2021.151600},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S004896972106678X},
	author = {Serranito, Bruno and Dim{\'e}glio, Tristan and Fr{\'e}d{\'e}ric Ysnel and Liz{\'e}, Anne and Eric Feunteun}
}
@article {9561,
	title = {Transcriptome Profiling of the Pacific Oyster Crassostrea gigas Visceral Ganglia over a Reproduction Cycle Identifies Novel Regulatory Peptides},
	journal = {Marine Drugs},
	volume = {19},
	year = {2021},
	month = {Jan-08-2021},
	pages = {452},
	doi = {10.3390/md19080452},
	url = {https://www.mdpi.com/1660-3397/19/8/452},
	author = {R{\'e}alis-Doyelle, Emilie and Schwartz, Julie and Cabau, C{\'e}dric and Le Franc, Lorane and Bernay, Beno{\^\i}t and Guillaume Rivi{\`e}re and Klopp, Christophe and Favrel, Pascal}
}
@article {8123,
	title = {Transcriptome Profiling of the Pacific Oyster  Visceral Ganglia over a Reproduction Cycle Identifies Novel Regulatory Peptides.},
	journal = {Mar Drugs},
	volume = {19},
	year = {2021},
	month = {2021 Aug 07},
	abstract = {<p>The neuropeptides involved in the regulation of reproduction in the Pacific oyster () are quite diverse. To investigate this diversity, a transcriptomic survey of the visceral ganglia (VG) was carried out over an annual reproductive cycle. RNA-seq data from 26 samples corresponding to VG at different stages of reproduction were de novo assembled to generate a specific reference transcriptome of the oyster nervous system and used to identify differentially expressed transcripts. Transcriptome mining led to the identification of novel neuropeptide precursors (NPPs) related to the bilaterian Eclosion Hormone (EH), crustacean female sex hormone/Interleukin 17, Nesfatin, neuroparsin/IGFBP, prokineticins, and urotensin I; to the protostome GNQQN, pleurin, prohormones 3 and 4, prothoracotropic hormones (PTTH), and QSamide/PXXXamide; to the lophotrochozoan CCWamide, CLCCY, HFAamide, and LXRX; and to the mollusk-specific NPPs CCCGS, clionin, FYFY, GNamide, GRWRN, GSWN, GWE, IWMPxxGYxx, LXRYamide, RTLFamide, SLRFamide, and WGAGamide. Among the complete repertoire of NPPs, no sex-biased expression was observed. However, 25 NPPs displayed reproduction stage-specific expression, supporting their involvement in the control of gametogenesis or associated metabolisms.</p>
},
	issn = {1660-3397},
	doi = {10.3390/md19080452},
	author = {R{\'e}alis-Doyelle, Emilie and Schwartz, Julie and Cabau, C{\'e}dric and Le Franc, Lorane and Bernay, Beno{\^\i}t and Riviere, Guillaume and Klopp, Christophe and Favrel, Pascal}
}
@article {8104,
	title = {Upstream/downstream food quality differences in a Caribbean Island River},
	journal = {Aquatic Ecology},
	year = {2021},
	month = {Oct-08-2021},
	issn = {1386-2588},
	doi = {10.1007/s10452-021-09887-w},
	url = {https://link.springer.com/10.1007/s10452-021-09887-w},
	author = {Frott{\'e}, Lou and Alexandre Bec and C{\'e}dric Hubas and Perri{\`e}re, Fanny and Cordonnier, S{\'e}bastien and Bezault, Etienne and Monti, Dominique}
}
@article {8126,
	title = {Waterfalls mediate the longitudinal distribution of diadromous predatory fishes structuring communities in tropical, short, steep coastal streams},
	journal = {Freshwater Biology},
	volume = {66},
	year = {2021},
	month = {Jan-06-2021},
	pages = {1225 - 1241},
	issn = {0046-5070},
	doi = {10.1111/fwb.v66.610.1111/fwb.13712},
	url = {https://onlinelibrary.wiley.com/toc/13652427/66/6},
	author = {Ebner, Brendan C. and Donaldson, James A. and Murphy, Helen and Thuesen, Paul and Ford, Andrew and Schaffer, Jason and Philippe Keith}
}
@article {7773,
	title = {Assessment of the quality of European silver eels and tentative approach to trace the origin of contaminants {\textendash} A European overview},
	journal = {Science of The Total Environment},
	volume = {743},
	year = {2020},
	month = {Jan-11-2020},
	pages = {140675},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2020.140675},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969720341978},
	author = {Bourillon, Bastien and Anthony Acou and Thomas Trancart and Belpaire, Claude and Covaci, Adrian and Bustamante, Paco and Faliex, Elisabeth and Amilhat, Elsa and Malarvannan, Govindan and Virag, Laure and Aarestrup, Kim and Bervoets, Lieven and Boisneau, Catherine and Boulenger, Clarisse and Gargan, Paddy and Becerra-Jurado, Gustavo and Lob{\'o}n-Cervi{\'a}, Javier and Maes, Gregory E. and Pedersen, Michael Ingemann and Poole, Russell and Sj{\"o}berg, Niklas and Wickstr{\"o}m, H{\r a}kan and Walker, Alan and Righton, David and Eric Feunteun}
}
@article {8551,
	title = {Behavioural inference from signal processing using animal-borne multi-sensor loggers: a novel solution to extend the knowledge of sea turtle ecology},
	journal = {Royal Society Open Science},
	volume = {7},
	year = {2020},
	month = {Jan-05-2020},
	pages = {200139},
	doi = {10.1098/rsos.200139},
	url = {https://royalsocietypublishing.org/doi/10.1098/rsos.200139},
	author = {Jeantet, Lor{\`e}ne and Planas-Bielsa, V{\'\i}ctor and Benhamou, Simon and Geiger, S{\'e}bastien and Martin, Jordan and Siegwalt, Flora and Lelong, Pierre and Gresser, Julie and Etienne, Denis and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and R{\'e}gis, Sidney and Lecerf, Nicolas and Frouin, C{\'e}dric and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Maillet, Thomas and Andreani, Lucas and Campistron, Guilhem and Delvaux, H{\'e}l{\`e}ne and Guyon, Christelle and Richard, Sandrine and Lefebvre, Fabien and Aubert, Nathalie and Habold, Caroline and Le Maho, Yvon and Chevallier, Damien}
}
@article {7172,
	title = {Benthic ecoregionalization based on echinoid fauna of the Southern Ocean supports current proposals of Antarctic Marine Protected Areas under IPCC scenarios of climate change},
	journal = {Global Change Biology},
	volume = {26},
	year = {2020},
	month = {Jan-04-2020},
	pages = {2161 - 2180},
	issn = {1354-1013},
	doi = {10.1111/gcb.v26.410.1111/gcb.14988},
	url = {https://onlinelibrary.wiley.com/toc/13652486/26/4},
	author = {Fabri-Ruiz, Salom{\'e} and Danis, Bruno and Navarro, Nicolas and Koubbi, Philippe and Laffont, R{\'e}mi and Sauc{\`e}de, Thomas}
}
@article {7047,
	title = {Biodiversity inventory of the grey mullets (Actinopterygii: Mugilidae) of the Indo-Australian Archipelago through the iterative use of DNA-based species delimitation and specimen assignment methods},
	journal = {Evolutionary Applications},
	year = {2020},
	month = {Nov-02-2020},
	abstract = {DNA barcoding opens new perspectives on the way we document biodiversity. Initially proposed to circumvent the limits of morphological characters to assign unknown individuals to known species, DNA barcoding has been used in a wide array of studies where collecting species identity constitutes a crucial step. The assignment of unknowns to knowns assumes that species are already well identified and delineated, making the assignment performed reliable. Here, we used DNA-based species delimitation and specimen assignment methods iteratively to tackle the inventory of the Indo-Australian Archipelago grey mullets, a notorious case of taxonomic complexity that requires DNA-based identification methods considering that traditional morphological identifications are usually not repeatable and sequence mislabeling is common in international sequence repositories. We first revisited a DNA barcode reference library available at the global scale for Mugilidae through different DNA-based species delimitation methods to produce a robust consensus scheme of species delineation. We then used this curated library to assign unknown specimens collected throughout the Indo-Australian Archipelago to known species. A second iteration of OTU delimitation and specimen assignment was then performed. We show the benefits of using species delimitation and specimen assignment methods iteratively to improve the accuracy of specimen identification and propose a workflow to do so.},
	keywords = {Coral Triangle, Cryptic diversity, DNA barcoding, reference library, taxonomic gap},
	issn = {1752-4571},
	doi = {10.1111/eva.12926},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/eva.12926},
	author = {Delrieu-Trottin, Erwan and Durand, Jean-Dominique and Limmon, Gino and Sukmono, Tedjo and Kadarusman and Sugeha, Hagi Yulia and Chen, Wei-Jen and Busson, Frederic and Borsa, Philippe and Dahruddin, Hadi and Sauri, Sopian and Fitriana, Yuli and Zein, Mochamad Syamsul Arifin and Hocd{\'e}, R{\'e}gis and Pouyaud, Laurent and Philippe Keith and Wowor, Daisy and Steinke, Dirk and Hanner, Robert and Hubert, Nicolas}
}
@article {7897,
	title = {Is a cannibal different from its conspecifics? A behavioural, morphological, muscular and retinal structure study with pikeperch juveniles under farming conditions},
	journal = {Applied Animal Behaviour Science},
	volume = {224},
	year = {2020},
	month = {Jan-03-2020},
	pages = {104947},
	abstract = {Most studies carried out on personality recognized that personality is defined by behavioural traits consistent through time and/or contexts. In\&nbsp;fish, most studies on personality were performed either on juveniles (aged between 6 months and 1 year) or adults, but very few focused on the early life stages. The main goal of this study is to characterize behavioural syndromes and to highlight the existence of a personality in young juvenile pikeperch, a species with a strong economic value. To study the consistency of behavioural responses of juvenile (50 and 64 days post-hatch) pikeperch\&nbsp;Sander lucioperca\&nbsp;(n = 41, total length = 5.8 {\textpm} 1.0 cm and mass = 1.6 {\textpm} 0.7 g), we performed three tests per\&nbsp;fish in one day: exploration (cross-maze), dyadic and restraint test. In the cross-maze test, exploratory\&nbsp;fish were more active and bolder. In the dyadic test,\&nbsp;fish with the highest number of contacts, showed also more approaches, orientations and avoidance behaviours. In the restraint test, bolder\&nbsp;fish were more active and tried to escape more often. Consequently, the investigation of the different behavioural responses of each\&nbsp;fish highlighted behavioural syndromes in this species. Furthermore, for the\&nbsp;first time, we showed, with a cross-context analysis, that young juvenile pikeperch, responded in the same way to exploration and dyadic test but their responses were opposite in the restraint test. Our results opened new opportunities for testing individual personality in very young\&nbsp;fish that may help solving some aquaculture problems, such as intra-cohort cannibalism.},
	keywords = {Behavioural syndromes, behavioural tests, Individual personality, Pikeperch juveniles, Sander lucioperca},
	issn = {01681591},
	doi = {10.1016/j.applanim.2020.104947},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0168159120300228},
	author = {Tatiana Colchen and Gisbert, E and Ledor{\'e}, Y and Teletchea, F and Fontaine, P and Pasquet, A}
}
@article {7587,
	title = {Comparison of approaches for incorporating depredation on fisheries catches into Ecopath},
	journal = {ICES Journal of Marine Science},
	year = {2020},
	month = {Jan-11-2022},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsaa219},
	url = {https://academic.oup.com/icesjms/advance-article/doi/10.1093/icesjms/fsaa219/6000671},
	author = {Clavareau, Lyndsay and Marzloff, Martin P and Trenkel, Verena M and Bulman, Catherine M and Gourguet, Sophie and Le Gallic, Bertrand and Hernvann, Pierre-Yves and Clara P{\'e}ron and Nicolas Gasco and Faure, Johanna and Tixier, Paul},
	editor = {Northridge, Simon}
}
@article {7116,
	title = {Development of an accurate model to predict the phenology of Atlantic salmon smolt spring migration},
	journal = {Aquatic Conservation: Marine and Freshwater Ecosystems},
	year = {2020},
	month = {Apr-07-2021},
	abstract = {Changes in migration timing, resulting from the alteration in river continuity or the effect of climate change, can have major consequences on the population dynamics of diadromous fish. Forecasting the phenology of fish migration is thus critically important to implement management actions aimed at protecting fish during their migration.<br>
In this study, an 11-year monitoring survey of Atlantic salmon smolts (Salmo salar\&nbsp;) from the Ourthe River, Belgium, was analysed within a European Special Area of Conservation to improve the understanding of environment-induced spring migration. A logistic model was fitted to forecast smolt migration and to calculate phenological indicators for management, i.e. the onset, end, and duration of migration, while accounting for the influence of photoperiod, water temperature, and hydrological conditions.<br>
The results indicated that the photo-thermal units accumulated by smolts above a 7{\textdegree}C temperature threshold was a relevant proxy to reflect the synergistic effect between temperature and photoperiod on smolt migration. After integrating the effect of river flow pulses, the model accurately explained the inter-annual changes in migration timing (R2\&nbsp;= 0.95). The model predictions provide decisive management information to identify sensitive periods during which mitigation measures (e.g. hydropower turbine shutdown, river discharge management) should be conducted to promote smolt survival.<br>
The model was used to predict phenological characteristics under future scenarios of climate change. The results suggest a joint effect of hydrological alterations and water warming. Temperature increases of 1{\textendash}4{\textdegree}C were associated with earlier initiation of migration, 6{\textendash}51 days earlier, and spring flood events greatly influenced the duration of the migration period. Accordingly, the combined effects of human-induced modifications of the hydrological regimes and increasing temperatures could result in a mismatch between the smolt and favourable survival conditions in the marine environment.},
	issn = {1052-7613},
	doi = {10.1002/aqc.3382},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/aqc.3382},
	author = {Teichert, Nils and Benitez, Jean-Philippe and Dierckx, Arnaud and T{\'e}tard, St{\'e}phane and Oliveira, Eric and Thomas Trancart and Eric Feunteun and Ovidio, Micha{\"e}l}
}
@article {7534,
	title = {Dietary taurine improves vision in different age gilthead sea bream (Sparus aurata) larvae potentially contributing to increased prey hunting success and growth},
	journal = {Aquaculture},
	year = {2020},
	month = {Jan-11-2020},
	pages = {736129},
	issn = {00448486},
	doi = {10.1016/j.aquaculture.2020.736129},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0044848620338357},
	author = {Gaon, A. and Nixon, O. and Tandler, A. and Falcon, J. and Besseau, L. and Escande, M. and El Sadin, S. and Allon, G. and Koven, W.}
}
@article {8080,
	title = {Differential Regulation of the Expression of the Two Thyrotropin Beta Subunit Paralogs by Salmon Pituitary Cells In Vitro},
	journal = {Frontiers in Endocrinology},
	volume = {11},
	year = {2020},
	month = {Mar-11-2022},
	doi = {10.3389/fendo.2020.603538},
	url = {https://www.frontiersin.org/articles/10.3389/fendo.2020.603538/full},
	author = {Fleming, Mitchell Stewart and Maugars, Gersende and Martin, Patrick and Sylvie Dufour and Rousseau, Karine}
}
@article {7046,
	title = {Disentangling the taxonomy of the subfamily Rasborinae (Cypriniformes, Danionidae) in Sundaland using DNA barcodes},
	journal = {Scientific Reports},
	volume = {10},
	year = {2020},
	month = {Jan-12-2020},
	abstract = {iodiversity hotspots have provided useful geographic proxies for conservation efforts. Delineated from a few groups of animals and plants, biodiversity hotspots do not reflect the conservation status of freshwater fishes. With hundreds of new species described on a yearly basis, fishes constitute the most poorly known group of vertebrates. This situation urges for an acceleration of the fish species inventory through fast and reliable molecular tools such as DNA barcoding. The present study focuses on the freshwater fishes diversity in the Sundaland biodiversity hotspot in Southeast Asia. Recent studies evidenced large taxonomic gaps as well as unexpectedly high levels of cryptic diversity, particularly so in the islands of Java and Bali. The Cypriniformes genera Rasbora and Nemacheilus account for most of the endemic species in Java and Bali, however their taxonomy is plagued by confusion about species identity and distribution. This study examines the taxonomic status of the Rasbora and Nemacheilus species in Java, Bali and Lombok islands through DNA barcodes, with the objective to resolve taxonomic confusion and identify trends in genetic diversity that can be further used for conservation matters. Several species delimitation methods based on DNA sequences were used and confirmed the status of most species, however several cases of taxonomic confusion and two new taxa are detected. Mitochondrial sequences argue that most species range distributions currently reported in the literature are inflated due to erroneous population assignments to the species level, and further highlight the sensitive conservation status of most Rasbora and Nemacheilus species on the islands of Java, Bali and Lombok.},
	keywords = {Conservation genetics, Cryptic diversity, Population fragmentation, Southeast Asia, taxonomy},
	doi = {10.1038/s41598-020-59544-9},
	url = {http://www.nature.com/articles/s41598-020-59544-9},
	author = {Sholihah, Arni and Delrieu-Trottin, Erwan and Sukmono, Tedjo and Dahruddin, Hadi and Risdawati, Renny and Elvyra, Roza and Wibowo, Arif and Kustiati, Kustiati and Busson, Frederic and Sauri, Sopian and Nurhaman, Ujang and Dounias, Edmond and Zein, Muhamad Syamsul Arifin and Fitriana, Yuli and Utama, Ilham Vemendra and Muchlisin, Zainal Abidin and Agn{\`e}se, Jean-Fran{\c c}ois and Hanner, Robert and Wowor, Daisy and Steinke, Dirk and Philippe Keith and R{\"u}ber, Lukas and Hubert, Nicolas}
}
@article {7111,
	title = {Effects of a temperature rise on Atlantic salmon, Salmo salar, melatonin and thyroid hormones during smoltification},
	journal = {Journal of Comparative Physiology B},
	volume = {190},
	year = {2020},
	month = {09/2020},
	pages = {731-748},
	type = {ACL},
	abstract = {Smoltification prepares juvenile Atlantic salmon (Salmo salar) for downstream migration. Dramatic changes characterize this crucial event in the fish life cycle, including gills{\textquoteright} Na+/K+-ATPase activity (NKA) and plasma hormonal levels. The triggering of smoltification relies on photoperiod and is modulated by temperature. Both provide reliable information, to which fish adapted for thousands of years, that allows deciphering daily and calendar time. Here we studied the impact of different photoperiod (natural, sustained winter solstice) and temperature (natural, ~ +4{\textdegree}C) combinations, on gills{\textquoteright} NKA, plasma free triiodothyronine (T3), thyroxine (T4) and melatonin (MEL; the time-keeping hormone), throughout smoltification. We also studied the impact of temperature history on pineal gland MEL production in vitro. The spring increase in gills{\textquoteright} NKA was less pronounced in smolts kept under sustained winter photoperiod and/or elevated temperature. Plasma thyroid hormones levels displayed day-night variations, which were affected by elevated temperature, either independently from photoperiod (decrease in T3 levels) or under natural photoperiod exclusively (increase in T4 nocturnal levels). Nocturnal MEL secretion was potentiated by the elevated temperature, which also altered MEL profile under sustained winter photoperiod. Temperature also affected pineal MEL production in vitro, a response that depended on previous environmental acclimation of the organ. The results support the view that the salmon pineal is a photoperiod and temperature sensor, highlight the complexity of the interaction of these environmental factors on <em>S. salar</em> endocrine system, and suggest that climate change might compromise salmon{\textquoteright}s time {\textquotedblleft}deciphering{\textquotedblright} and processes such as smoltification, downstream migration and seawater residence.},
	keywords = {Atlantic salmon, melatonin, smoltification, Temperature, thyroid hormones},
	doi = {10.1007/s00360-020-01304-2},
	url = {https://link.springer.com/article/10.1007/s00360-020-01304-2},
	author = {Nisembaum, Laura Gabriela and Martin, Patrick and Fuent{\`e}s, Michael and Besseau, Laurence and Magnanou, Elodie and McCormick, Stephen D and Jack Falcon}
}
@article {7193,
	title = {Effects of a temperature rise on melatonin and thyroid hormones during smoltification of Atlantic salmon, Salmo salar},
	journal = { J Comp Physiol B},
	year = {2020},
	month = {03 September 202},
	type = {Journal Article},
	abstract = {Smoltification prepares juvenile Atlantic salmon (Salmo salar) for downstream migration. Dramatic changes characterize this crucial event in the salmon{\textquoteright}s life cycle, including increased gill Na+/K+-ATPase activity (NKA) and plasma hormone levels. The triggering of smoltification relies on photoperiod and is modulated by temperature. Both provide reliable information, to which fish have adapted for thousands of years, that allows deciphering daily and calendar time. Here we studied the impact of different photoperiod (natural, sustained winter solstice) and temperature (natural, ~ + 4{\textdegree} C) combinations, on gill NKA, plasma free triiodothyronine (T3) and thyroxine (T4), and melatonin (MEL; the time-keeping hormone), throughout smoltification. We also studied the impact of temperature history on pineal gland MEL production in vitro. The spring increase in gill NKA was less pronounced in smolts kept under sustained winter photoperiod and/or elevated temperature. Plasma thyroid hormone levels displayed day{\textendash}night variations, which were affected by elevated temperature, either independently from photoperiod (decrease in T3 levels) or under natural photoperiod exclusively (increase in T4 nocturnal levels). Nocturnal MEL secretion was potentiated by the elevated temperature, which also altered the\&nbsp;MEL profile under sustained winter photoperiod. Temperature also affected pineal MEL production in vitro, a response that depended on previous environmental acclimation of the organ. The results support the view that the salmon pineal is a photoperiod and temperature sensor, highlight the complexity of the interaction of these environmental factors on the endocrine system of S. salar, and indicate that climate change might compromise salmon{\textquoteright}s time {\textquotedblleft}deciphering{\textquotedblright} during smoltification, downstream migration and seawater residence.},
	keywords = {Atlantic salmon, melatonin, Temperature, thyroid hormones},
	doi = {10.1007/s00360-020-01304-2},
	url = {https://link.springer.com/article/10.1007\%2Fs00360-020-01304-2},
	author = {Nisembaum, Laura Gabriela and Martin, Patrick and Fuent{\`e}s, M and Besseau, Laurence and Magnanou, Elodie and McCormick, Stephen and Falc{\'o}n, Jack}
}
@article {7189,
	title = {Establishment and population features of the non-native Atlantic rangia, Rangia cuneata (Mollusca: Bivalvia), in northwestern France},
	volume = {15},
	year = {2020},
	pages = {367-381},
	abstract = {The presence of shells of the Atlantic rangia, Rangia cuneata, a brackish-water species native from the Gulf of Mexico also known as gulf wedge clam, was reported in 2017 on the French coasts of the English Channel, in the waterway that connects Caen to the sea. However, no information was available on whether a population of this alien species had successfully established in the region. Here, only empty shells{\textemdash}except for one live individual{\textemdash}were sampled in that waterway, and the sampling was shifted to the nearby marina of Ouistreham, where water is mesohaline (6.89 {\textpm} SD 0.06 PSU). In spring 2017, the mean density in the marina reached 110.45 {\textpm} 86.08 ind\&nbsp;m-2, largely dominating the benthos community. The population was mostly composed of fairly large individuals, with no young-of-the-year found inside the marina. The modal values of the size frequency distribution ranged between 35 and 40 mm shell length. The growth patterns determined from the annual rings suggest a maximum lifespan of eight completed years. Following the assumption that colonization occurred at the larval stage, as in other European countries, this population may have established in 2009, i.e. only four years after its first detection in Europe, in the Antwerp harbour. The specimens collected are the largest recorded in European waters, suggesting that a highly suitable environment for the species in the region. Given the invasive potential of Atlantic rangia within the last decade, a close monitoring of this population and of the spread of the species in French and European waters appears necessary to determine its impacts on these ecosystems.},
	keywords = {Alien species, brackish waters, density, Growth, Normandy (F), Reproduction, The Atlantic rangia},
	author = {Robin Faillettaz and Christophe Roger and Michel Mathieu and Jean-Paul Robin and Katherine Costil}
}
@article {7533,
	title = {Exposure to Artificial Light at Night and the Consequences for Flora, Fauna, and Ecosystems},
	journal = {Frontiers in Neuroscience},
	volume = {14},
	year = {2020},
	month = {Apr-11-2021},
	doi = {10.3389/fnins.2020.602796},
	url = {https://www.frontiersin.org/articles/10.3389/fnins.2020.602796/full},
	author = {Falc{\'o}n, Jack and Torriglia, Alicia and Attia, Dina and Vi{\'e}not, Fran{\c c}oise and Gronfier, Claude and Behar-Cohen, Francine and Martinsons, Christophe and Hicks, David}
}
@article {6863,
	title = {The food source of Sargasso Sea leptocephali},
	journal = {Marine Biology},
	volume = {167},
	year = {2020},
	month = {Jan-05-2020},
	issn = {0025-3162},
	doi = {10.1007/s00227-020-3662-6},
	url = {http://link.springer.com/10.1007/s00227-020-3662-6},
	author = {Miller, Michael J. and Hanel, Reinhold and Eric Feunteun and Tsukamoto, Katsumi}
}
@article {7279,
	title = {A functional m6 A-RNA methylation pathway in the oyster Crassostrea gigas assumes epitranscriptomic regulation of lophotrochozoan development},
	journal = {The FEBS Journal},
	year = {2020},
	month = {Jan-09-2020},
	issn = {1742-464X},
	doi = {10.1111/febs.15500},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/febs.15500},
	author = {Le Franc, Lorane and Bernay, Beno{\^\i}t and Petton, Bruno and Since, Marc and Pascal Favrel and Guillaume Rivi{\`e}re}
}
@article {8548,
	title = {High fidelity of sea turtles to their foraging grounds revealed by satellite tracking and capture-mark-recapture: New insights for the establishment of key marine conservation areas},
	journal = {Biological Conservation},
	volume = {250},
	year = {2020},
	month = {Jan-10-2020},
	pages = {108742},
	issn = {00063207},
	doi = {10.1016/j.biocon.2020.108742},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0006320720308004},
	author = {Siegwalt, Flora and Benhamou, Simon and Girondot, Marc and Jeantet, Lor{\`e}ne and Martin, Jordan and Bonola, Marc and Lelong, Pierre and Grand, Cl{\'e}ment and Chambault, Philippine and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Maillet, Thomas and Andreani, Lucas and Campistron, Guilhem and Jacaria, Fran{\c c}ois and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and Etienne, Denis and Gresser, Julie and R{\'e}gis, Sidney and Lecerf, Nicolas and Frouin, C{\'e}dric and Lefebvre, Fabien and Aubert, Nathalie and Vedie, Fabien and Barnerias, Cyrille and Thieulle, Laurent and Guimera, Christelle and Bouaziz, Myriam and Pinson, Adrien and Flora, Fr{\'e}d{\'e}ric and George, Francis and Eggenspieler, Joffrey and Woignier, Thierry and All{\'e}nou, Jean-Pierre and Louis-Jean, Laurent and Chanteur, B{\'e}n{\'e}dicte and B{\'e}ranger, Christelle and Crillon, Jessica and Brador, Aude and Habold, Caroline and Le Maho, Yvon and Robin, Jean-Patrice and Chevallier, Damien}
}
@article {7105,
	title = {How good is the evidence that light at night can affect human health?},
	journal = {Graefe{\textquoteright}s Archive for Clinical and Experimental Ophthalmology},
	volume = {258},
	year = {2020},
	month = {Jan-02-2020},
	pages = {231 - 232},
	issn = {0721-832X},
	doi = {10.1007/s00417-019-04579-6},
	url = {http://link.springer.com/10.1007/s00417-019-04579-6},
	author = {Hicks, David and Attia, Dina and Behar-Cohen, Francine and Carr{\'e}, Samuel and Enouf, Olivier and Jack Falcon and Gronfier, Claude and Martinsons, Christophe and Metlaine, Arnaud and Tahkamo, Leena and Torriglia, Alicia and Fran{\c c}oiseVi{\'e}not}
}
@article {6578,
	title = {Influence of the physiological condition of bivalve recruits on their post-settlement dispersal potential},
	journal = {Marine Ecology Progress Series},
	volume = {636},
	year = {2020},
	pages = {77 - 89},
	abstract = {Secondary dispersal (= migration) of bivalves occurs after metamorphosis and is a key recruitment process that can radically change patterns of primary settlement. An example of secondary dispersal is active migration behavior of bivalve recruits such as in bysso-pelagic drift. We hypothesize that these active migrations represent an energy cost for recruits and that the ability to actively migrate will depend upon the recruit{\textlnot}{\'\i}s physiological profile (quantity and quality of energy reserves). In lab experiments, we hatched 4 batches of recruits of\&nbsp;Venus verrucosa\&nbsp;with different physiological profiles by varying rearing temperature and diet composition. We then introduced these recruits into a fall velocity tube (5 m height) to estimate their vertical fall velocity as a proxy of their dispersal potential: slower fall velocity implies enhanced dispersal potential. We also compared alive vs. passive (dead) recruits to assess behavioral differences. Fall velocity increased logarithmically with recruit volume for each treatment, and no differences between active and passive individuals were observed for batches reared at 20{\textdegree}C with a mixture of\&nbsp;Tisochrysis lutea\&nbsp;and\&nbsp;Chaetoceros gracilis. By contrast, active recruits in 2 other treatments (T. lutea\&nbsp;at 20{\textdegree}C and a mix of\&nbsp;C. gracilis\&nbsp;and\&nbsp;T. lutea\&nbsp;at 15{\textdegree}C) significantly decreased their fall velocity regardless of their volume. Moreover, the ability of recruits to control their fall velocity by their behavior was correlated with triglyceride content. Recruits with the highest energy reserves had the greatest capacity to decrease their fall velocity, which suggests a major role of physiological conditions on potential secondary dispersal. We also used a benthic flume to test the substrate selection ability of recruits depending on their physiological profile and found no differences between physiologically different batches. However,\&nbsp;V. verrucosa\&nbsp;recruits preferred fine sediments, unlike adults, which live mainly in coarse sediment habitats; such difference in substrate preference suggests potential secondary migrations between nursery and adult areas.},
	keywords = {Behavior, Bivalves recruits, Energetic reserves, Physiology, secondary migrations, Venus verrucosa},
	issn = {0171-8630},
	doi = {10.3354/meps13223},
	url = {https://www.int-res.com/abstracts/meps/v636/p77-89},
	author = {Martin For{\^e}t and Fr{\'e}d{\'e}ric Olivier and Miner, P and Gesche Winkler and Nadalini, J-B and R{\'e}jean Tremblay}
}
@article {7109,
	title = {Les effets du r{\'e}chauffement climatique sur le m{\'e}tabolisme : les poissons, d{\textquoteright}excellents indicateurs},
	year = {2020},
	keywords = {photop{\'e}riode, Poissons, r{\'e}chauffement climatique, Temperature},
	url = {https://blog.defi-ecologique.com/effets-rechauffement-climatique-metabolisme-poissons/},
	author = {Jack Falcon}
}
@book {8129,
	title = {Les poissons d{\textquoteright}eau douce de France},
	year = {2020},
	pages = {704},
	publisher = {Biotope Editions, M{\`e}ze ; Mus{\'e}um national d{\textquoteright}Histoire naturelle, Paris (collection Inventaires et biodiversit{\'e})},
	organization = {Biotope Editions, M{\`e}ze ; Mus{\'e}um national d{\textquoteright}Histoire naturelle, Paris (collection Inventaires et biodiversit{\'e})},
	edition = {2nde},
	address = {Paris},
	author = {Philippe Keith and Poulet, Nicolas and Denys, Ga{\"e}l and Changeux Thomas and Eric Feunteun and Persat, Henri}
}
@article {6883,
	title = {Lipidome variations of deep-sea vent shrimps according to acclimation pressure: A homeoviscous response?},
	journal = {Deep Sea Research Part I: Oceanographic Research Papers},
	year = {2020},
	month = {Jan-04-2020},
	pages = {103285},
	issn = {09670637},
	doi = {10.1016/j.dsr.2020.103285},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S096706372030073X},
	author = {Bruce Shillito and Desurmont, C. and Barthelemy, D. and Farabos, D. and Despr{\'e}s, G. and Juliette Ravaux and Zbinden, M. and Lamazi{\`e}re, A.}
}
@article {7173,
	title = {Matching zooplankton abundance and environment in the South Indian Ocean and Southern Ocean},
	journal = {Deep Sea Research Part I: Oceanographic Research Papers},
	year = {2020},
	month = {Jan-08-2020},
	pages = {103347},
	issn = {09670637},
	doi = {10.1016/j.dsr.2020.103347},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0967063720301345},
	author = {Godet, Claire and Robuchon, Marine and Leroy, Boris and Cott{\'e}, C{\'e}dric and Baudena, Alberto and Da Silva, Oph{\'e}lie and Fabri-Ruiz, Salom{\'e} and Lo Monaco, Claire and Sergi, Sara and Koubbi, Philippe}
}
@article {6724,
	title = {Microbial functional structure and stable isotopic variation of leptocephali across three current zones in the western South Pacific},
	journal = {Progress in Oceanography},
	volume = {182},
	year = {2020},
	pages = {102264},
	abstract = {The ecology of leptocephali remains poorly known but they appear to feed on marine snow that can vary spatially and temporally according to the food web dynamics. This study provided new information about the position of leptocephali within the functional structure of microbial plankton and other food web components of the western South Pacific (WSP) region at a large geographic scale including the New Caledonia, Fiji, and Samoa islands. The hydrographic structure varied with latitude, and nutrient levels were generally low but somewhat variable. Stable isotopic signatures were examined in relation to the 3 current zones of the eastward flowing South Equatorial Countercurrent (SECC; north), the westward South Equatorial Current (SEC; mid-latitudes), and the eastward South Tropical Countercurrent (STCC; south), and all zones were found to be primarily based on a heterotrophic planktonic functioning that were co-limited by inorganic nitrogen and phosphorus, with biomasses of planktonic groups varying with depth. Isotopic signatures of leptocephali were compared to the signatures of other mesozoplankton, micronekton, and Trichodesmium components of the food web, and in relation to the signatures of particulate organic matter (POM) that varied among the 3 collection depths. The isotopic signatures of six taxa of leptocephali, other taxonomic groups and POM showed interesting variability according to latitude and among some stations. The presence of Trichodesmium at the surface in the STCC zone influenced the isotopic signatures of POM and thus the signatures of leptocephali. The signatures of leptocephali were therefore linked with the overall food web and were consistent with the larvae feeding on marine snow components of POM. The two apparent groups of leptocephali with different isotopic signatures that have also been observed in other oceanic areas may be explained by feeding behavior at different depths or on different types of marine snow.},
	keywords = {Isotopic signature, Leptocephali, Meso-macro-zooplankton, Microbial loop, Micronekton, POM, Western South Pacific},
	issn = {0079-6611},
	doi = {10.1016/j.pocean.2020.102264},
	url = {http://www.sciencedirect.com/science/article/pii/S0079661120300021},
	author = {Leopold Ghinter and Christine Dupuy and Michael J. Miller and Alexandre Carpentier and Christel Lefran{\c c}ois and Anthony Acou and Jun Aoyama and Mari Kuroki and Li{\'e}nart, Camilla and Shun Watanabe and Katsumi Tsukamoto and Tsuguo Otake and Eric Feunteun}
}
@article {6482,
	title = {Modelling European small pelagic fish distribution: Methodological insights},
	journal = {Ecological Modelling},
	volume = {416},
	year = {2020},
	month = {Jan-01-2020},
	pages = {108902},
	abstract = {The distribution of marine organisms is strongly influenced by climatic gradients worldwide. The ecological niche (sensu Hutchinson) of a species, i.e. the combination of environmental tolerances and resources required by an organism, interacts with the environment to determine its geographical range. This duality between niche and distribution allows climate change biologists to model potential species{\textquoteright} distributions from past to future conditions. While species distribution models (SDMs) have been intensively used over the last years, no consensual framework to parametrise, calibrate and evaluate models has emerged. Here, to model the contemporary (1990{\textendash}2017) spatial distribution of seven highly harvested European small pelagic fish species, we implemented a comprehensive and replicable numerical procedure based on 8 SDMs (7 from the Biomod2 framework plus the NPPEN model). This procedure considers critical issues in species distribution modelling such as sampling bias, pseudo-absence selection, model evaluation and uncertainty quantification respectively through (i) an environmental filtration of observation data, (ii) a convex hull based pseudo-absence selection, (iii) a multi-criteria evaluation of model outputs and (iv) an ensemble modelling approach. By mitigating environmental sampling bias in observation data and by identifying the most ecologically relevant predictors, our framework helps to improve the modelling of fish species{\textquoteright} environmental suitability. Not only average temperature, but also temperature variability appears as major factors driving small pelagic fish distribution, and areas of highest environmental suitability were found along the north-western Mediterranean coasts, the Bay of Biscay and the North Sea. We demonstrate in this study that the use of appropriate data pre-processing techniques, an often-overlooked step in modelling, increase model predictive performance, strengthening our confidence in the reliability of predictions.},
	keywords = {Convex hull, Pseudo-absence, Sampling bias, Small pelagic fish, species distribution models, uncertainty},
	issn = {03043800},
	doi = {10.1016/j.ecolmodel.2019.108902},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0304380019304107},
	author = {Schickele, Alexandre and Leroy, Boris and Gr{\'e}gory Beaugrand and Goberville, Eric and Hattab, Tarek and Patrice Francour and Virginie Raybaud}
}
@article {7294,
	title = {New histological information on Holoptychius Agassiz, 1839 (Sarcopterygii, Porolepiformes) provides insights into the palaeoecological implications and evolution of the basal plate of the scales of osteichthyans},
	journal = {Historical Biology},
	year = {2020},
	month = {Feb-07-2021},
	pages = {1 - 13},
	abstract = {The porolepiform\&nbsp;Holoptychius\&nbsp;Agassiz, 1839 from the Upper Devonian is one of the most widely found vertebrates in the Palaeozoic fossil record.\&nbsp;Holoptychius\&nbsp;is considered to display a more ubiquitous mode of life and a greater potential of dispersion than any other sarcopterygian taxon, consistent with its cosmopolitan distribution and profuse fossil record, mainly represented by scales. Previous studies on the squamation of\&nbsp;Holoptychius\&nbsp;have discussed the variable ornamentation of the superficial layer; however, the basal plate has been less explored. Here we furnish new histological data on the scales of\&nbsp;Holoptychius, focusing on the mineralisation rate and organisation of the lamellar bone. Ground sections show that the basal plate is made of a stacking of thick collagenous layers with a plywood-like structure. Collagenous fibres are parallel within layers, with two successive layers orthogonally arranged and with every second layer rotated by an angle of 36{\textordmasculine}. This condition, known as a double-twisted plywood-like organisation, is similar to that of other sarcopterygians like\&nbsp;Eusthenopteron\&nbsp;and extant coelacanths and dipnoans. The new palaeohistological data provide insights into the morphofunctional, palaeoecological and phylogenetical implications of the microstructural characteristics of the scales, adding to our knowledge of the histological diversity of osteichthyans.},
	issn = {0891-2963},
	doi = {10.1080/08912963.2020.1786552},
	url = {https://www.tandfonline.com/doi/full/10.1080/08912963.2020.1786552},
	author = {Mond{\'e}jar Fern{\'a}ndez, Jorge and Fran{\c c}ois J Meunier}
}
@article {7573,
	title = {No way home: collapse in northern gannet survival rates point to critical marine ecosystem perturbation},
	journal = {Marine Biology},
	volume = {167},
	year = {2020},
	month = {Jan-12-2020},
	issn = {0025-3162},
	doi = {10.1007/s00227-020-03801-y},
	url = {http://link.springer.com/10.1007/s00227-020-03801-y},
	author = {Gr{\'e}millet, David and Clara P{\'e}ron and Lescro{\"e}l, Am{\'e}lie and Fort, J{\'e}r{\^o}me and Patrick, Samantha C. and Besnard, Aur{\'e}lien and Provost, Pascal}
}
@article {7896,
	title = {The onset of piscivory in a freshwater fish species: analysis of behavioural and physiological traits},
	journal = {Journal of Fish Biology},
	volume = {96},
	year = {2020},
	month = {Jan-06-2020},
	pages = {1463 - 1474},
	abstract = {The onset of piscivory in fish, resulting in a shift from zooplankton or invertebrate to fish prey, was studied on pikeperch (Sander lucioperca) larvae displaying and not dis- playing piscivorous behaviour at different ages (23, 30, 37, 44 and 52 days post- hatching) using behavioural (attack, capture and swimming activity), morphological (allometry) and digestive enzymatic (trypsin,\&nbsp;α-amylase and pepsin) analyses. The shift from zooplanktonic food items (Artemia\&nbsp;nauplii) to a piscivorous diet did not occur at the same time for all individuals within the same cohort. Predation tests, conducted under controlled conditions (20C;\&nbsp;ad libitum\&nbsp;feeding), showed that some larvae attacked fish prey as early as the age of 3 weeks [11.0 {\textpm} 1.3 mm total length (TL)], whereas others did not start until the age of 6 weeks (16.6 {\textpm} 1.9 mm TL). Piscivorous individuals were bigger, with larger heads, longer tails, higher acid protease and lower alkaline protease activities, than non-piscivorous conspecifics. In conclusion, high interindividual variability in morphological and digestive system developments linked to the development of predatory abilities could induce cannibalism in fish.},
	keywords = {behavioural tests, early life stages, freshwater fish, predatory behaviour, Sander lucioperca},
	issn = {0022-1112},
	doi = {10.1111/jfb.v96.610.1111/jfb.14322},
	url = {https://onlinelibrary.wiley.com/toc/10958649/96/6},
	author = {Tatiana Colchen and Dias, Andr{\'e}a and Gisbert, Enric and Teletchea, Fabrice and Fontaine, Pascal and Pasquet, Alain}
}
@article {7545,
	title = {Public Perceptions of Mangrove Forests Matter for Their Conservation},
	journal = {Frontiers in Marine Science},
	volume = {7},
	year = {2020},
	month = {Jul-11-2021},
	abstract = {Iconic species and landscapes attract public attention to help reverse the degradation of ecosystems and their biodiversity (Thompson and Rog, 2019); sharing their images on social media can act as a powerful way to influence perceptions and drive positive actions by the public (Wu et al., 2018). Social media platforms such as Twitter, Facebook and Instagram have been used to great effect to communicate the urgency required to halt and reverse tropical forest loss (Lamb et al., 2005) and the plight of coral reefs (Curnock et al., 2019). Ecosystems such as seagrass meadows, mudflats, and mangrove forests receive substantially less media exposure (Duarte et al., 2008). Yet these under-recognized ecosystems are hugely important for local and global societies, providing benefits such as shoreline protection (Barbier, 2016), fisheries (Carrasquilla-Henao and Juanes, 2017), carbon capture and storage (Duarte et al., 2013), alongside supporting rich marine and terrestrial biodiversity (Sievers et al., 2019;\&nbsp;Thompson and Rog, 2019) (Figure 1). Apart from these important ecosystem functions, goods and services, mangrove forests are home to a huge diversity of organisms with ecologically and evolutionarily unique adaptations to life in the intertidal zone, including vivipary and salt tolerance in trees, air-breathing in crabs and amphibious behavior in fish (mudskippers); this makes mangrove forests a dynamic and fascinating evolutionary laboratory.},
	doi = {10.3389/fmars.2020.60365110.3389/fmars.2020.603651.s001},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2020.603651/full},
	author = {Dahdouh-Guebas, Farid and Ajonina, Gordon N. and Amir, A. Aldrie and Andradi-Brown, Dominic A. and Aziz, Irfan and Balke, Thorsten and Barbier, Edward B. and Cannicci, Stefano and Cragg, Simon M. and Cunha-Lignon, Mar{\'\i}lia and Curnick, David J. and Duarte, Carlos M. and Duke, Norman C. and Endsor, Charlie and Fratini, Sara and Feller, Ilka C. and Fromard, Fran{\c c}ois and Hug{\'e}, Jean and Huxham, Mark and Kairo, James G. and Kajita, Tadashi and Kathiresan, Kandasamy and Koedam, Nico and Lee, Shing Yip and Lin, Hsing-Juh and Mackenzie, Jock R. and Mangora, Mwita M. and Marchand, Cyril and Tarik Meziane and Minchinton, Todd E. and Pettorelli, Nathalie and Polan{\'\i}a, Jaime and Polgar, Gianluca and Poti, Meenakshi and Primavera, Jurgenne and Quarto, Alfredo and Rog, Stefanie M. and Satyanarayana, Behara and Schaeffer-Novelli, Yara and Spalding, Mark and Van der Stocken, Tom and Wodehouse, Dominic and Yong, Jean W. H. and Zimmer, Martin and Friess, Daniel A.}
}
@article {6865,
	title = {Relationship between bacterial compartment and particulate organic matter (POM) in coastal systems: An assessment using fatty acids and stable isotopes},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {239},
	year = {2020},
	month = {Jan-07-2020},
	pages = {106720},
	issn = {02727714},
	doi = {10.1016/j.ecss.2020.106720},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771419301593},
	author = {Li{\'e}nart, Camilla and Savoye, Nicolas and Conan, Pascal and David, Val{\'e}rie and Barbier, Pierrick and Bichon, Sabrina and Charlier, Karine and Costes, Laurence and Derriennic, Herv{\'e} and Ferreira, Sophie and Gueux, Aurore and C{\'e}dric Hubas and Maria, Eric and Tarik Meziane}
}
@article {7777,
	title = {Resolving the trade-off between silver eel escapement and hydropower generation with simple decision rules for turbine shutdown},
	journal = {Journal of Environmental Management},
	volume = {261},
	year = {2020},
	month = {Jan-05-2020},
	pages = {110212},
	issn = {03014797},
	doi = {10.1016/j.jenvman.2020.110212},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S030147972030147X},
	author = {Teichert, Nils and T{\'e}tard, St{\'e}phane and Thomas Trancart and Eric Feunteun and Anthony Acou and de Oliveira, Eric}
}
@article {6736,
	title = {Resolving the trade-off between silver eel escapement and hydropower generation with simple decision rules for turbine shutdown},
	journal = {Journal of Environmental Management},
	volume = {261},
	year = {2020},
	pages = {110212},
	abstract = {Hydropower plants are commonly reported as a major cause of the worldwide decline of freshwater eels (Anguillidae), so that management solutions are urgently needed to mitigate their impacts. Where downstream passage solutions are complex to develop, turbine shutdown appears as an effective management solution to protect silver eels during their river migration toward spawning areas. However, the definition of operational decision rules for turbine shutdown is challenging due to the duality between the benefit for eel conservation and the concomitant cost in term of hydropower production. Here, we proposed a decision framework for turbine shutdown based on simple hydrological criteria to guide negotiations between stakeholders toward a trade-off between silver eel escapement and hydropower generation. Eel migration was assumed to be triggered by a minimum river flow associated with a minimum discharge pulse, so that threshold values can be directly implemented as decision rules for turbine shutdown. To estimate relevant thresholds, a generic methodological framework was developed to generate alternative decision rules from data collected at hydropower plants, which can include telemetry surveys and estimates of eel abundance. A multiple-criteria decision analysis was then conducted to rank alternatives and to determine the best compromise between promoting silver eel escapement and limiting turbine shutdown duration. Graphic outputs can help stakeholders to understand the competitive interests between eel conservation and hydropower production, while visually identifying a range of consensual alternatives to support negotiations in the choice of operational thresholds. The method was illustrated for three river systems in Europe featured by distinct hydrological conditions and can be applied in other areas, providing that eel monitoring surveys and flow data are available.},
	keywords = {Conservation policy, Decision rules, Multiple-criteria decision, Turbine shutdown},
	issn = {0301-4797},
	doi = {https://doi.org/10.1016/j.jenvman.2020.110212},
	url = {http://www.sciencedirect.com/science/article/pii/S030147972030147X},
	author = {Teichert, Nils and St{\'e}phane T{\'e}tard and Thomas Trancart and Eric Feunteun and Anthony Acou and Eric de Oliveira}
}
@article {9389,
	title = {Respective contribution of urban wastewater and mangroves on nutrient dynamics in a tropical estuary during the monsoon season},
	journal = {Marine Pollution Bulletin},
	volume = {160},
	year = {2020},
	pages = {111652},
	abstract = {Estuaries of Southeast Asia are increasingly impacted by land-cover changes and pollution. Here, our research objectives were to (1) determine the origins of nutrient loads along the Can Gio estuary (Vietnam) and (2) identify the processes that affect the nutrient pools during the monsoon. We constructed four 24-h time-series along the salinity gradient measuring nutrient concentrations and stable isotopes values. In the upper estuary, urban effluents from Ho Chi Minh City were the main input of nutrients, leading to dissolved oxygen satura- tion \&lt; 20\%. In the lower estuary, ammonium and nitrite concentration peaks were explained by mangrove export. No contribution from aquaculture was detected, as it represents \&lt; 0.01\% of the total river discharge. Along the salinity gradient, nutrient inputs were rapidly consumed, potentially by phytoplankton while nitrate dual-stable isotopes indicated that nitrification occurred. Thus, even in a large and productive estuary, urban wastewater can affect nutrient dynamics with potentially important ecological risks.},
	issn = {0025326X},
	doi = {10.1016/j.marpolbul.2020.111652},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0025326X20307700},
	author = {Taillardat, Pierre and Marchand, Cyril and Friess, Daniel A. and Widory, David and Frank David and Ohte, Nobuhito and Nakamura, Takashi and Van Vinh, Truong and Thanh-Nho, Nguyen and Ziegler, Alan D.}
}
@article {7000,
	title = {Sources of organic matter in an atypical phytoplankton rich coral ecosystem, Marquesas Islands: composition and properties},
	journal = {Marine Biology},
	volume = {167},
	year = {2020},
	month = {Jan-07-2020},
	abstract = {The purpose of this work is to characterize several potential sources of organic matter (OM) in the Marquesas Islands, French Polynesia, and to understand how these sources contribute to OM pools. Stable isotope (δ13C and δ15N) and fatty acid (FA) compositions of OM potential sources (algal turf, benthic macroalgae, detrital terrestrial plants (DTP), phytoplankton) and OM pools (sediment (SOM) and particulate organic matter (POM)) were studied in coastal areas in Nuku Hiva Island. Isotope compositions of marine POM (δ13C = -22.5 {\textpm} 0.8 {\textperthousand}; δ15N = 12.1 {\textpm} 1.1 {\textperthousand}) and SOM (δ13C = -19.1 {\textpm} 0.9 {\textperthousand}; δ15N = 14.4 {\textpm} 0.5 {\textperthousand}) highlighted that OM sources at the base of the local food web had unusually high δ15N values. Potential FA markers of diatoms and/or cyanobacteria (20:5ω3 and 16:1ω7) were found in these two OM pools. In addition, coastal SOM also displayed FA markers of bacteria, macroalgae and terrestrial plants. Formarine POM, potential macroalgae FA markers were recorded (18:2ω6 and 16:2ω4). The stable isotope mixing model highlighted the major contribution of phyto-plankton to the coastal SOM (62\%), followed by benthic macroalgae (32\%), whereas marine POM was mainly composed of a mixture of algal turf and phytoplankton in similar averaged proportions (38\%) but presenting wide variations. Our results as a whole strongly suggest that pelagic-benthic coupled processes drive the characteristics and properties of OM sources.},
	issn = {0025-3162},
	doi = {10.1007/s00227-020-03703-z},
	url = {http://link.springer.com/10.1007/s00227-020-03703-z},
	author = {Fey, P. and Parravicini, V. and Lebreton, B. and Tarik Meziane and Ren{\'e} Galzin and Zubia, M. and Bӑnaru, D. and Letourneur, Y.}
}
@article {7990,
	title = {A spatial food web model to investigate potential spillover effects of a fishery closure in an offshore wind farm},
	journal = {Journal of Marine Systems},
	volume = {212},
	year = {2020},
	month = {Jan-12-2020},
	pages = {103434},
	issn = {09247963},
	doi = {10.1016/j.jmarsys.2020.103434},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0924796320301305},
	author = {Halouani, Ghassen and Villanueva, Ching-Maria and Raoux, Aurore and Dauvin, Jean Claude and Ben Rais Lasram, Frida and Foucher, Eric and Le Loc{\textquoteright}h, Francois and Safi, Georges and Araignous, Emma and Jean-Paul Robin and Nathalie Niquil}
}
@article {6723,
	title = {Stable species boundaries despite ten million years of hybridization in tropical eels},
	journal = {Nature Communications},
	volume = {11},
	year = {2020},
	month = {Jan-12-2020},
	doi = {10.1038/s41467-020-15099-x},
	url = {https://www.nature.com/articles/s41467-020-15099-x},
	author = {Barth, Julia M. I. and Gubili, Chrysoula and Matschiner, Michael and T{\o}rresen, Ole K. and Watanabe, Shun and Egger, Bernd and Han, Yu-San and Eric Feunteun and Sommaruga, Ruben and Jehle, Robert and Robert Schabetsberger}
}
@article {7774,
	title = {Stable species boundaries despite ten million years of hybridization in tropical eels},
	journal = {Nature Communications},
	volume = {11},
	year = {2020},
	month = {Jan-12-2020},
	doi = {10.1038/s41467-020-15099-x},
	url = {http://www.nature.com/articles/s41467-020-15099-x},
	author = {Barth, Julia M. I. and Gubili, Chrysoula and Matschiner, Michael and T{\o}rresen, Ole K. and Watanabe, Shun and Egger, Bernd and Han, Yu-San and Eric Feunteun and Sommaruga, Ruben and Jehle, Robert and Schabetsberger, Robert}
}
@article {7038,
	title = {A standardized, innovative method to characterize the structure of aquatic protein hydrolysates},
	journal = {Heliyon},
	volume = {6},
	year = {2020},
	month = {Jan-06-2020},
	pages = {e04170},
	issn = {24058440},
	doi = {10.1016/j.heliyon.2020.e04170},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2405844020310148},
	author = {Leduc, Alexandre and Fournier, Vincent and Henry, Jo{\"e}l}
}
@article {8553,
	title = {Survival and breeding interval of an endangered marine vertebrate, the leatherback turtle Dermochelys coriacea, in French Guiana},
	journal = {Endangered Species Research},
	volume = {41},
	year = {2020},
	month = {Jan-02-2021},
	pages = {153 - 165},
	issn = {1863-5407},
	doi = {10.3354/esr01013},
	url = {https://www.int-res.com/abstracts/esr/v41/p153-165/},
	author = {Chevallier, Damien and Girondot, M and Berzins, R and Chevalier, J and de Thoisy, B and Fretey, J and Kelle, L and Lebreton, JD}
}
@article {6732,
	title = {Swinging boat moorings: Spatial heterogeneous damage to eelgrass beds in a tidal ecosystem},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {235},
	year = {2020},
	pages = {106581},
	abstract = {Seagrass meadows are currently known to be subjected to huge physical disturbances including boat moorings in shallow bays. We aimed to identify the impact of permanent swing mooring on the fast-growing seagrass Zostera marina in a mega-tidal area. Coupling the hydrodynamic MARS3D model to simulate mooring chain movements and in situ measurements of plant traits, we analyzed the structural responses of the eelgrass bed to scraping disturbance in the western English Channel (France). A comparison of the results with a reference site without any permanent swing boat mooring showed a significant impact on eelgrass structure (shoot density, leaf size, leaf dry weight), depending on the direction and distance from the mooring. Zostera marina was absent close to the mooring fixation point in three out of the four directions we evaluated. Beyond 5\&nbsp;m, the canopy height remained lower than in the reference site, most likely due to regular disturbances by mooring chains. Conversely, shoot density beyond 5\&nbsp;m was higher than in the reference site. This adaptive response counter-balanced the decrease in canopy height at these distances. The fluctuations of the structure of the eelgrass cover (number of shoots, leaf length) at a small spatial scale was clearly in accordance with the scraping intensity simulated by the MARS3D model. The tidal currents coupled to tidal amplitude variability imply a small-scale heterogeneous effect of permanent mooring on the benthic compartment, previously undetected by an aerial survey. The present results highlight the interest of coupling approaches so as to understand how physical pressure influences fast-growing species traits. The resulting important modifications could imply a more functional impact such as biodiversity loss and carbon sequestration, which is beyond the scope of the present paper.},
	keywords = {Anthropogenic disturbances, Boat mooring, Modeling approach, SCUBA-Diving, Seagrass ecology},
	issn = {0272-7714},
	doi = {https://doi.org/10.1016/j.ecss.2020.106581},
	url = {http://www.sciencedirect.com/science/article/pii/S027277141930068X},
	author = {Vincent Ouisse and Irina Marchand-Jouravleff and Annie Fiandrino and Eric Feunteun and Fr{\'e}d{\'e}ric Ysnel}
}
@article {7026,
	title = {Towards transferability in fish migration models: A generic operational tool for predicting silver eel migration in rivers},
	journal = {Science of The Total Environment},
	volume = {739},
	year = {2020},
	month = {Jan-10-2020},
	pages = {140069},
	abstract = {In the global context of river fragmentation, predicting fish migration is urgent to implement management actions aimed at protecting and promoting the free movement of diadromous fish. However, large-scale applicability of conservation measures requires transferable models that enable prediction of migration even in data-poor regions. Here, we surveyed 12 contrasted European river sites to predict the activity peaks of silver eels (Anguilla anguilla) during river migration towards spawning areas through an ensemble modelling approach. Site-specific Boosted Regression Tree (BRT) models were adjusted using standardized hydrological variables to predict migration probability, which were aggregated in consensus predictions. Results of independent cross-validations demonstrated that silver eel migration runs were accurately predicted in response to changes in river discharge. Transferability and predictive performance were improved by considering catchment-size dissimilarity between river sites (85 to 109 930 km{\texttwosuperior}) when combining the site-specific predictions. Nevertheless, we provided two examples for which the effects of human actions on flow conditions were so high that they prevented reliable predictions of migration runs. Further contributions should thus take advantage of the flexibility of our approach for updating model collection with new sites to extend the predictive performance under a larger range of ecological conditions. Our transferable hydrological-based modelling framework offers an opportunity to implement large-scale management strategies for eel conservation, even in rivers where eel monitoring data lack. The BRT models and prediction functions were compiled in an R package named {\textquoteleft}silvRpeak{\textquoteright} to facilitate operational implementation by end-user managers, which can determine when mitigation measures should be implemented to improve river continuity (e.g. turbine shutdown and sluice gate opening) and balance their economic activity towards eel conservation. The only input required is discharge records that are widely available across European hydrological stations.},
	keywords = {eel runs prediction, ensemble modelling, European eel management, fish migration, model transferability, river obstacle},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2020.140069},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969720335890},
	author = {Teichert, Nils and T{\'e}tard, St{\'e}phane and Thomas Trancart and de Oliveira, Eric and Anthony Acou and Alexandre Carpentier and Bourillon, Bastien and Eric Feunteun}
}
@article {7163,
	title = {Using Modern Conservation Tools for Innovative Management of Coral Reefs: The MANACO ConsortiumVideo_1.MP4},
	journal = {Frontiers in Marine Science},
	volume = {7},
	year = {2020},
	month = {Sep-07-2021},
	doi = {10.3389/fmars.2020.0060910.3389/fmars.2020.00609.s001},
	url = {https://www.frontiersin.org/article/10.3389/fmars.2020.00609/full},
	author = {Selmoni, Oliver and Lecellier, Ga{\"e}l and Ainley, Lara and Collin, Antoine and Doucet, Raimana and Dubousquet, Vaimiti and Feremaito, Hudson and Ito Waia, Edouard and Kininmonth, Stuart and Magalon, H{\'e}l{\`e}ne and Malimali, Siola{\textquoteright}a and Maugateau, Ateliana and Meibom, Anders and Mosese, Stephen and Ren{\'e}-Trouillefou, Malika and Satoh, Noriyuki and van Oppen, Madeleine J. H. and Xozam{\'e}, Andr{\'e} and Y{\'e}kawene, Maxime and Joost, St{\'e}phane and Berteaux-Lecellier, V{\'e}ronique}
}
@article {7480,
	title = {What evidence exists on the impacts of chemicals arising from human activity on tropical reef-building corals? A systematic map protocol},
	journal = {Environmental Evidence},
	volume = {9},
	year = {2020},
	month = {Aug-03-2020},
	abstract = {<strong>Background:</strong> Tropical coral reefs cover ca. 0.1\% of the Earth{\textquoteright}s surface but host an outstanding biodiversity and provide important ecosystem services to millions of people living nearby. However, they are currently threatened by both local (e.g. nutrient enrichment and chemical pollution of coastal reefs, arising from poor land management, agriculture and industry) and global stressors (mainly seawater warming and acidification, i.e. climate change). Global and local stressors interact together in different ways, but the presence of one stressor often reduces the tolerance to additional stress. While global stressors cannot be halted by local actions, local stressors can be reduced through ecosystem management, therefore minimizing the impact of climate change on reefs. To inform decision-makers, we propose here to systematically map the evidence of impacts of chemicals arising from anthropogenic activities on tropical reef-building corals, which are the main engineer species of reef ecosystems. We aim to identify the combinations of chemical and coral responses that have attracted the most attention and for which evidence can be further summarized in a systematic review that will give practical information to decision-makers.<br>
<strong>Methods:</strong> The systematic map will follow the Collaboration for Environmental Evidence Guidelines and Standards for Evidence Synthesis in Environmental Management. We will search the relevant literature using English terms combined in a tested search string in two publication databases (Web Of Science Core Collection and Scopus). The search string will combine terms describing the population (tropical reef-building corals) and the exposure (chemicals). We will supplement this literature with some more obtained through search engines, specialist websites, and through a call to local stakeholders. Titles, abstracts, and full-texts will then be successively screened using pre-defined eligibility criteria. A list of pre-defined variables will then be extracted from full-texts. Finally, a database of all studies included in the map with coded metadata will be produced. The evidence will be described in a map report with text, figures and tables, and a matrix showing the distribution and frequency of included study into types of exposure and types of outcomes will be computed to identify potential knowledge gaps and knowledge clusters.},
	keywords = {Contamination, Hermatypic, Nutrients, pollution, Scleractinian},
	doi = {10.1186/s13750-020-00203-x},
	url = {https://environmentalevidencejournal.biomedcentral.com/articles/10.1186/s13750-020-00203-x},
	author = {Ou{\'e}draogo, Dakis-Yaoba and Sordello, Romain and Brugneaux, S. and Burga, K. and Calvayrac, C. and Castelin, Magalie and Domart-Coulon, Isabelle and Ferrier-Pages, C and Mireille M.M. Guillaume and H{\'e}douin, L. and Joannot, P. and Perceval, O. and Reyjol, Yorick}
}
@article {7895,
	title = {What is the best combination of modalities of twelve environmental, feeding and populational factors to improve pikeperch larval rearing in recirculating aquaculture systems?},
	journal = {Aquaculture Reports},
	volume = {17},
	year = {2020},
	month = {Jan-07-2020},
	pages = {100337},
	abstract = {Pikeperch (Sander lucioperca) has a high potential for inland aquaculture diversification in Europe. Bottlenecks (i.e. low survival, cannibalism and deformity rates) hamper further expansion of pikeperch culture, because of the weak production performances at the nursery level. To improve the production of pikeperch juveniles under recirculation system we used a pilot scale larval rearing system (700 L tanks) and multifactorial designs. Three successive larval rearing trials (duration: 35-49 days) were conducted to identify the best combination of en- vironmental, feeding and population factors. Considering the main significant effects observed on survival, growth, swim bladder inflation rates and biomass gain, a favourable combination of twelve factor (F) modalities was proposed (F1- initial density: 100 larvae.L-1, F2- no sorting of fish jumper, F3- no sibling population, F4- eggs from large females, F5- discontinuous feeding, F6- no co-feeding, F7- light intensity: 50 lx, F8- beginning of the weaning at 16 dph (days post-hatching), F9- weaning duration: 9 days, F10- water renewal rate of 100 \% per hour, F11- tank cleaning during morning and F12- tank bottom-up water current). A final validation step was realized over a last trial (seven replicates, duration: 49 days), and validated with the best productive results obtained over the global experimental period (2015-2018). These results were: a final body weight of 815.64 {\textpm} 95.34 mg, a survival rate of 16.9 {\textpm} 1.7 \%, a specific growth rate of 15.1 {\textpm} 5.9 \%.d-1, a final fish biomass of 9.55{\textpm}0.23 kg, a swim bladder inflation rate of 92.6{\textpm}3.2 \% and a food conversion rate of 0.65 {\textpm} 0.02 (dry food). The final stocking density was 13.6 kg.m-3\&nbsp;of rearing volume. Authors were able to validate and provide a reliable basic protocol for pikeperch larval rearing using recirculating units.},
	keywords = {early life stages, fish farming, multifactorial design, recirculating aquaculture system, Sander lucioperca},
	issn = {23525134},
	doi = {10.1016/j.aqrep.2020.100337},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2352513419304983},
	author = {Tatiana Colchen and Gisbert, E. and Krauss, D. and Ledor{\'e}, Y. and Pasquet, A. and Fontaine, P.}
}
@article {6730,
	title = {When {\textquotedblleft}safe{\textquotedblright} dams kill: Analyzing combination of impacts of overflow dams on the migration of silver eels},
	journal = {Ecological Engineering},
	volume = {145},
	year = {2020},
	pages = {105741},
	abstract = {1. The drastic decline in European eel\&nbsp;Anguilla anguilla\&nbsp;stock is now widely recognized. However, while various causes for this decline have been identified, the relative importance of each cause remains unclear.<br />
<br />
2. During the catadromous migration of silver eels, the negative impact of dams is frequently highlighted, but mainly for powered dams (with turbines) or where connectivity is completely ruptured. Mechanical impact due to turbine blades is often considered the most important cause of mortality of silver eels during downstream migration. Consequently, non-powered dams equipped with spillways are often considered safe for the passage of migrating silver eels.<br />
<br />
3. We hypothesized that, to understand the negative impacts of dams, a much wider context must be considered than turbine mortality alone. Using an acoustic telemetry survey of silver eels, we demonstrated the negative effects of non-powered dams on downstream migration.<br />
<br />
4. Five main impacts on eel populations were highlighted: (i) the attenuation or loss of triggering factors, leading to an absence of or delay in migration; (ii) extra delays and extra distances travelled when crossing the dam; (iii) extra energetic costs of the additional distance travelled as result of exploring the dam and the reservoir to find other escape passages; (iv) the selection of a more risky behavioral phenotype, i.e., bold eels; and (v) direct blocking once migration has started. Mortality was evaluated as a supplementary impact. Some of these effects (attenuation of triggers, extra delays to cross the dam) might be more important than the same effect from powered dams, probably due to the constant high water discharge required for turbines that facilitate the passage of eels.<br />
<br />
5. As these {\textquotedblleft}safe{\textquotedblright} dams are very widespread, they must be considered a potential threat to effective eel conservation.},
	keywords = {Acoustic telemetry, Migration, mortality, Non-powered dams, Silver eels, Turbines drinking water intake},
	issn = {0925-8574},
	doi = {https://doi.org/10.1016/j.ecoleng.2020.105741},
	url = {http://www.sciencedirect.com/science/article/pii/S092585742030029X},
	author = {Thomas Trancart and Alexandre Carpentier and Anthony Acou and Fabien Charrier and Virgile Mazel and Valentin Danet and Eric Feunteun}
}
@article {6879,
	title = {Are shallow-water shrimps proxies for hydrothermal-vent shrimps to assess the impact of deep-sea mining?},
	journal = {Marine Environmental Research},
	volume = {151},
	year = {2019},
	month = {Jan-10-2019},
	pages = {104771},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2019.104771},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0141113619303216},
	author = {Mestre, N.C. and Auguste, M. and de S{\'a}, L.C. and Fonseca, T.G. and Cardoso, C. and Brown, A. and Barthelemy, D. and Charlemagne, N. and Hauton, C. and Machon, J. and Juliette Ravaux and Bruce Shillito and Thatje, S. and Bebianno, M.J.}
}
@article {9384,
	title = {Assessing nutrient dynamics in mangrove porewater and adjacent tidal creek using nitrate dual-stable isotopes: A new approach to challenge the Outwelling Hypothesis?},
	journal = {Marine Chemistry},
	volume = {214},
	year = {2019},
	pages = {103662},
	abstract = {The importance of mangrove-derived material in sustaining coastal food webs (i.e. the Outwelling Hypothesis) is often invoked in support of mangroves conservation. Biogeochemical cycling, particularly nitrogen (N) and phosphorus (P) in mangrove ecosystems, however, is poorly understood because of high spatial heterogeneity and temporal variability of sources, sinks, and transformation pathways. Here we show that the distribution of N and P are intimately related to vegetation distribution, tidal cycles, and seasonality. We examined the dynamics of N and P in sediments and in a tidal creek of the Can Gio Mangrove Forest, Vietnam. Our objectives were to (1) determine the spatial distribution of dissolved inorganic nitrogen and phosphorus in the mangrove forest along a Rhizophora-Avicennia-mudflat transect; and (2) identify the respective inputs and transformation pathways of N and P in the water column via 24-h time series measurements in a tidal creek. Sediment porewater had N-NH4+ and N-NO3- concentrations \&lt; 11 μM, except in the mudflat where N-NH4+ was as high as 162 μM. This difference was likely due to N-NH4+ uptake by trees in the vegetated areas and suggests that mangrove sediments can be a zone of NH4+ production via ammonification of organic nitrogen. In all stands, P-PO43- concentrations were three-fold higher during the wet season, with a maximum of 34.4 μM. This can be explained by enhanced microbial activity during the rainy season. The phosphorus seasonal trend was also observed in the creek water but with a maximum P-PO43- value of 4.3 μM only. In the tidal creek, NNH4+ was highly variable (0 to 51 μM), with the higher values measured at low tide and related to porewater discharge from the mudflat. Our data suggest that mangroves act both as a sink of dissolved inorganic nutrients via vegetation uptake and a source of ammonium from unvegetated mudflat porewater towards the tidal creek. The dual stable isotopes approach (δ15NNO3 \&amp; δ18ONO3) revealed that this ammonium was later nitrified within the water column. Moreover, the approach showed that some nitrate originated from the river-estuarine system during rising tides. The export of ammonium from mangrove porewater is presumably entirely consumed before exiting the tidal creek, thereby limiting the spatial extent of mangrove Outwelling. Nevertheless, our multi-isotope approach leads us to conclude that nutrients recycling via mangrove-derived organic matter mineralization may play a fundamental role in sustaining coastal food web.},
	issn = {03044203},
	doi = {10.1016/j.marchem.2019.103662},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0304420319300489},
	author = {Taillardat, Pierre and Ziegler, Alan D. and Friess, Daniel A. and Widory, David and Frank David and Ohte, Nobuhito and Nakamura, Takashi and Evaristo, Jaivime and Thanh-Nho, Nguyen and Van Vinh, Truong and Marchand, Cyril}
}
@article {5810,
	title = {{Atlantic Multidecadal Oscillations drive the basin-scale distribution of Atlantic bluefin tuna}},
	journal = {Science Advances},
	volume = {5},
	year = {2019},
	pages = {eaar6993},
	abstract = {<p>The Atlantic bluefin tuna (hereafter referred to as {\textquotedblleft}bluefin tuna{\textquotedblright}), one of the world{\textquoteright}s most valuable and exploited fish species, has been declining in abundance throughout the Atlantic from the 1960s until the mid-2000s. Following the establishment of drastic management measures, the stock has started to recover recently and, as a result, stakeholders have raised catch quotas by 50{\%} for the period 2017{\textendash}2020. However, stock assessments still omit the natural, long-term variability in the species distribution. Here, we explore the century-scale fluctuations in bluefin tuna abundance and distribution to demonstrate a prevailing influence of the Atlantic Multidecadal Oscillation (AMO) to provide new insights into both the collapse of the Nordic bluefin tuna fishery circa 1963 and the recent increase in bluefin tuna abundance in the Northeast Atlantic. Our results demonstrate how climatic variability can modulate the distribution of a large migrating species to generate rapid changes in its regional abundance, and we argue that climatic variability must not be overlooked in stock management plans for effective conservation.</p>
},
	issn = {23752548},
	doi = {10.1126/sciadv.aar6993},
	author = {Robin Faillettaz and Gr{\'e}gory Beaugrand and Goberville, Eric and Richard R Kirby}
}
@article {7110,
	title = {AVIS et RAPPORT de l{\textquoteright}Anses relatif aux effets sur la sant{\'e} humaine et sur l{\textquoteright}environnement (faune et flore)  des syst{\`e}mes utilisant des diodes {\'e}lectroluninescentes (LED)},
	year = {2019},
	institution = {ANSES},
	address = {Maisons-Alfort},
	keywords = {Fauna, Flora, health, LED, Light-at-night, pollution},
	issn = {Saisine n{\textdegree} {\guillemotleft} 2014-SA-0253 {\guillemotright}},
	url = {https://www.anses.fr/fr/search/site/LED?iso1=fr\&iso2=en},
	author = {Attia, Dina and Behard-Cohen Francine and Carr{\'e}, Samuel and Enouf, Olivier and Jack Falcon and Gronfier, Claude and Hicks, David and Martinsons, Christophe and Metlaine, Arnaud and Tahkamo, Leena and Torriglia, Alicia and Vi{\'e}not, Fran{\c c}oise}
}
@article {6742,
	title = {Behaviour of endangered European eels in proximity to a dam during downstream migration: Novel insights using high accuracy 3D acoustic telemetry},
	journal = {Ecology of Freshwater Fish},
	volume = {29},
	year = {2019},
	pages = {266-279},
	abstract = {River infrastructures such as weirs, hydropower stations or water reservoirs represent obstructions to migration for diadromous fish. Knowledge of accurate behaviour of fish in front of such structures is required to protect migrants from hazardous areas, guide them towards safe passage or adapt structure to improve the escapement. We developed and made available a method to process acoustic telemetry data based on Time Difference Of Arrival analysis to accurately locate tagged fish. Improved accuracy allows the detection of escape routes and description of dam-crossing tactics. Sixteen tagged eels were tracked with high accuracy (1{\textendash}2\&nbsp;m) and 1 location min-1 frequency during their exploration period on reaching the dam. Two migration routes (spillways and bottom compensation flow pipe) were used by 77\% and 23\% of eels respectively. Spillways were the preferred route, but a median of 16\&nbsp;days were required to pass the dam versus 1.1\&nbsp;days via the compensation pipe. A minimal water crest of 40\&nbsp;cm was required for passage via spillways. Eels passing through the compensation pipe were exclusively nocturnal and mainly explored the bottom of the dam. Eels passing through spillways explored the whole dam area by night and day, and were not attracted to the compensation pipe entrance. With global warming, more frequent drought periods are expected, potentially leading to decreased opportunities for eels to migrate across safer dams by spillways. To conserve this endangered species, dam management strategies that account for expected hydrologic conditions and distinct exploration behaviours are needed.},
	keywords = {3D acoustic telemetry, dam, diadromous fish, downstream migration, European eel},
	doi = {10.1111/eff.12512},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12512},
	author = {Thomas Trancart and Alexandre Carpentier and Anthony Acou and Danet, Valentin and Elliott, Sophie and Eric Feunteun}
}
@article {7174,
	title = {Can we generate robust species distribution models at the scale of the Southern Ocean?},
	journal = {Diversity and Distributions},
	volume = {25},
	year = {2019},
	month = {Jan-01-2019},
	pages = {21 - 37},
	doi = {10.1111/ddi.12835},
	url = {http://doi.wiley.com/10.1111/ddi.12835},
	author = {Fabri-Ruiz, Salom{\'e} and Danis, Bruno and David, Bruno and Sauc{\`e}de, Thomas},
	editor = {Treml, Eric}
}
@article {6741,
	title = {Changes in marine phytoplankton diversity: Assessment under the Marine Strategy Framework Directive},
	journal = {Ecological Indicators},
	volume = {102},
	year = {2019},
	pages = {265 - 277},
	abstract = {The Marine Strategy Framework Directive requires EU Member States to assess the Good Environmental Status (GES) of their marine waters in a coherent and strategic manner. For the regional assessment of biodiversity, the OSPAR Intersessional Coordination Group of Biodiversity Assessment and Monitoring (ICG-COBAM) provides substantial advice. Through expert working groups, phytoplankton indicators are currently being developed to measure the state and the change in pelagic diversity, to quantify food web dynamics and to measure the extent of eutrophication impacts. We developed a multi-metric indicator that is compliant with the common OSPAR indicator {\textquotedblleft}Changes in plankton diversity{\textquotedblright} (PH3). The aim was to describe the structure of the phytoplankton community (alpha diversity) and to detect significant temporal changes (beta diversity) to evaluate the health of pelagic habitats. In this pilot study, we used three coastal time-series in the Western Channel and the north of the Bay of Biscay (North Atlantic, France) to test the efficiency and the performance of several existing diversity indices. We validated two alpha diversity indices, namely the Menhinick Index (D) and the Hulburt Index (δ), based on their complementary ecological information, their strong relationship with habitat characteristics, and their relative ease of interpretation for stakeholders. Temporal shifts or rate of change in community structure were detected by the Local Contributions to Beta Diversity index (LCBD; a beta diversity measure). For the years where significantly high LCBD values were found, the Importance Value Index (IVI) was calculated to potentially identify the taxa (genus) responsible for the {\textquotedblleft}unusual{\textquotedblright} community structure. For example, at the Ouest Loscolo site in 2008, an elevated LCBD (0.45) coincided with a high dominance value (Hulburt{\textquoteright}s Index) caused by the occurrence of a monospecific bloom of Leptocylindrus spp. (IVI = 73\%) in July (2.22 {\texttimes} 106 cells L-1) and October (8 {\texttimes} 106 cells L-1). In this way, PH3 informs on different aspects of phytoplankton diversity from a community to a genus level. At the current stage of development, however, PH3 acts as a {\textquotedblleft}surveillance{\textquotedblright} rather than an operational indicator since the relationship to GES is not directly tracked. In the future, by additional testing of PH3 and extending the geographical scope, the robustness of the assessment could be further determined across the OSPAR Maritime Area.},
	keywords = {community composition, Good environmental status, Indicators, Marine policy, MSFD, OSPAR, Pelagic habitat, Plankton},
	issn = {1470-160X},
	doi = {https://doi.org/10.1016/j.ecolind.2019.02.009},
	url = {http://www.sciencedirect.com/science/article/pii/S1470160X19301190},
	author = {Rombouts, I. and Nathalie Simon and Anais Aubert and T. Cariou and Eric Feunteun and Laurent Guerin and M. Hoebeke and A. McQuatters-Gollop and F. Rigaut-Jalabert and Luis Felipe Artigas}
}
@article {6116,
	title = {Characterization of an evolutionarily conserved calcitonin signalling system in a lophotrochozoan, the Pacific oyster ().},
	journal = {J Exp Biol},
	volume = {222},
	year = {2019},
	month = {2019 Jul 05},
	abstract = {<p>In Protostoma, the diuretic hormone 31 (DH31) signalling system was long considered as the orthologue of the chordate calcitonin (CT) signalling system. Using the Pacific oyster () transcriptomic database GigaTON, we characterized seven G-protein-coupled receptors (GPCRs) named Cragi-CTR1-7 and phylogenetically related to chordate CT receptors (CTRs) and to protostome DH31 receptors. Two CT precursors (Cragi-CTP1 and Cragi-CTP2) containing two CT-type peptides and encoded by two distinct genes with a similar organization were also characterized. These oyster neuropeptides (Cragi-CT1/2) exhibit the two N-terminal paired cysteine residues and, except CTP2-derived peptide (Cragi-CTP2dp), show the C-terminal proline-amide motif typical of deuterostome CT-type peptides. All mature Cragi-CTs except Cragi-CTP2dp were detected in visceral ganglion extracts using mass spectrometry. Cell-based assays revealed that the previously characterized oyster receptors Cg-CT-R and Cragi-CTR2 were specifically activated by Cragi-CT1b and Cragi-CT2, respectively. This activation does not require the co-expression of receptor activity-modifying proteins (RAMPs). Thus, oyster CT signalling appears functionally more closely related to vertebrate CT/CTR signalling than to calcitonin gene-related peptide/calcitonin receptor-like receptor (CGRP/CLR) signalling. Gene expression profiles in different adult tissues and in oysters acclimated to brackish water suggest the potential implication of both Cg-CT-R/Cragi-CT1b and Cragi-CTR2/Cragi-CT2 in water and ionic regulations, although with apparently opposite effects. The present study represents the first comprehensive characterization of a functional CT-type signalling system in a protostome and provides evidence for its evolutionarily ancient origin and its early role in osmotic homeostasis.</p>
},
	issn = {1477-9145},
	doi = {10.1242/jeb.201319},
	author = {Julie Schwartz and R{\'e}alis-Doyelle, Emilie and Marie-Pierre Dubos and Lefranc, Benjamin and Leprince, J{\'e}r{\^o}me and Pascal Favrel}
}
@article {6796,
	title = {Characterization of an evolutionarily conserved calcitonin signalling system in a lophotrochozoan, the Pacific oyster (Crassostrea gigas)      },
	journal = {The Journal of Experimental Biology},
	volume = {222},
	year = {2019},
	month = {Jan-07-2019},
	pages = {jeb201319},
	issn = {0022-0949},
	doi = {10.1242/jeb.201319},
	url = {http://jeb.biologists.org/lookup/doi/10.1242/jeb.201319},
	author = {Julie Schwartz and R{\'e}alis-Doyelle, Emilie and Marie-Pierre Dubos and Lefranc, Benjamin and Leprince, J{\'e}r{\^o}me and Pascal Favrel}
}
@article {6014,
	title = {Contrasting biodiversity of eel larvae across the central Indian Ocean subtropical gyre},
	journal = {Deep Sea Research Part II: Tropical Studies in Oceanography},
	volume = {161},
	year = {2019},
	pages = {120{\textendash}131},
	abstract = {The unique semi-enclosed Indian Ocean basin includes large Mascarene\&nbsp;Plateau\&nbsp;banks, offshore\&nbsp;coral-reef\&nbsp;islands, seasonal equatorial current jets, and cross-basin westward South Equatorial Current (SEC) flow, making it interesting for studying long larval-duration eel larvae (leptocephali) and regional eel biodiversity. Three surveys for\&nbsp;leptocephali\&nbsp;(in 2003, 2006, 2010) included sampling west of the Mascarene Plateau (west), a major survey and other stations off Sumatra and Java (east), and 2 cross-basin transects across the SEC. The highest numbers of leptocephali species were observed along Sumatra (2003: ~143 species; 2006: 72 species) and south of Java (2010: 69), with intermediate numbers being collected in the western Indian Ocean (2006: 71; 2010: 53) compared to low numbers in the hydrographically variable offshore zones (2006, 2010: 3{\textendash}27). The larger\&nbsp;continental shelf\&nbsp;areas along Sumatra including the Mentawai Islands provide more coral reef and other habitats for species such as congrid, muraenid, ophichthid, and chlopsid eels compared to the Mascarene Plateau banks. Some larvae in these areas get transported offshore, but the majority of offshore larvae were of Nemichthyidae and Serrivomeridae mesopelagic eels that were spawning across the basin. Habitat differences between the southern Mascarene Plateau and Sumatra and southern Indonesia along the edge of the high biodiversity Coral Triangle likely explain the higher biodiversity of eel larvae observed along the western side of the basin, which for the Congridae and Ophichthidae included more species than observed previously within the central Indonesian Seas. In addition to local spawning, seasonal currents likely transport larger larvae towards Sumatra from the north or west and larvae may enter the basin from the Indonesian\&nbsp;Throughflow\&nbsp;in the east, but it is unknown if equatorial jets or the SEC can transport larvae across the whole basin.},
	doi = {doi.org/10.1016/j.dsr2.2018.02.012},
	url = {https://www.sciencedirect.com/science/article/pii/S0967064517304393},
	author = {Miller, Michael J and Wouthuyzen, Sam and Eric Feunteun and Aoyama, Jun and Watanabe, Shun and Syahailatua, Augy and Kuroki, Mari and Robinet, Tony and Hagihara, Seishi and Otake, Tsuguo and others}
}
@article {7106,
	title = {Correspondence: An appraisal of the effects on human health and the environment of using light-emitting diodes},
	journal = {Lighting Research \& Technology},
	volume = {51},
	year = {2019},
	month = {Jan-12-2019},
	pages = {1275 - 1276},
	issn = {1477-1535},
	doi = {10.1177/1477153519891878},
	url = {http://journals.sagepub.com/doi/10.1177/1477153519891878},
	author = {Martinsons, Christophe and Attia, Dina and Behar-Cohen, Francine and Carr{\'e}, Samuel and Enouf, Olivier and Jack Falcon and Gronfier, Claude and Hicks, David and Metlaine, Arnaud and Tahkamo, Leena and Torriglia, Alicia and Vi{\'e}not, Fran{\c c}oise}
}
@article {8155,
	title = {Data for evolutive analysis of insulin related peptides in bilaterian species},
	journal = {Data in Brief},
	volume = {22},
	year = {2019},
	month = {Jan-02-2019},
	pages = {546 - 550},
	issn = {23523409},
	doi = {10.1016/j.dib.2018.12.050},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2352340918315890},
	author = {Cherif--Feildel, Ma{\"e}va and Clothilde Berthelin and Riviere, Guillaume and Favrel, Pascal and Kellner, Kristell}
}
@article {8745,
	title = {Differential Influence of Life Cycle on Growth and Toxin Production of three Pseudo-nitzschia species (Bacillariophyceae)},
	journal = {Journal of Phycology},
	volume = {55},
	year = {2019},
	month = {Mar-10-2021},
	pages = {1126 - 1139},
	issn = {0022-3646},
	doi = {10.1111/jpy.v55.510.1111/jpy.12898},
	url = {https://onlinelibrary.wiley.com/toc/15298817/55/5},
	author = {Aurore Sauvey and Pascal Claquin and Bertrand Le Roy and Le Gac, Mickael and Juliette Fauchot},
	editor = {Kroth, P.}
}
@article {6656,
	title = {Differential Influence of Life Cycle on Growth and Toxin Production of three Pseudo-nitzschia Species (Bacillariophyceae)},
	journal = {Journal of Phycology},
	volume = {55},
	year = {2019},
	pages = {1126-1139},
	abstract = {We used a multistrain approach to study the intra- and interspecific variability of the growth rates of three Pseudo-nitzschia species {\textendash} P. australis, P. fraudulenta, and P. pungens {\textendash} and of their domoic acid (DA) production. We carried out mating and batch experiments to investigate the respective effects of strain age and cell size, and thus the influence of their life cycle on the physiology of these species. The cell size {\textendash} life cycle relationship was characteristic of each species. The influence of age and cell size on the intraspecific variability of growth rates suggests that these characteristics should be considered cautiously for the strains used in physiological studies on Pseudo-nitzschia species. The results from all three species do not support the hypothesis of a decrease in DA production with time since isolation from natural populations. In P. australis, the cellular DA content was rather a function of cell size. More particularly, cells at the gametangia stage of their life cycle contained up to six times more DA than smaller or larger cells incapable of sexual reproduction. These findings reveal a link between P. australis life cycle and cell toxicity. This suggest that life cycle dynamics in Pseudo-nitzschia natural populations may influence bloom toxicity. {\textcopyright} 2019 Phycological Society of America},
	issn = {00223646},
	doi = {10.1111/jpy.12898},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/jpy.12898},
	author = {Aurore Sauvey and Pascal Claquin and Le Roy, Bertrand and Le Gac, Mickael and Juliette Fauchot}
}
@article {6734,
	title = {Distribution and life history trait models indicate vulnerability of skates},
	journal = {Progress in Oceanography},
	volume = {181},
	year = {2019},
	pages = {102256},
	abstract = {Elasmobranchs are k-strategy species with low reproduction rate and slow growth lending to increased anthropogenic vulnerability. Specific management measures to improve the conservation of elasmobranchs can be problematic due to insufficient information on their biology and ecology. Here, three sympatric skates occupying north-eastern Atlantic waters, which have differing conservation status were studied within ICES divisions 4.c, 7.d{\textendash}e, 7.f{\textendash}h and 8a{\textendash}b and d. Fisheries-dependent data on skate bycatch and a series of environmental variables were used to model spatio-temporal differences in habitat use between the three species. Raja undulata, the undulate ray (IUCN red listed as {\textquoteleft}Endangered{\textquoteright}) was observed to have a coastal distribution within the English Channel and the Bay of Biscay (ICES division 7.d{\textendash}e and 8.a{\textendash}b). Raja clavata, the thornback ray ({\textquoteleft}Near threatened{\textquoteright}), had a broader distribution with higher presence in the eastern English Channel and the southern North Sea (ICES division 7.e and 4.c). Raja montagui, the spotted ray{\textquoteright}s probability of presence ({\textquoteleft}Least concerned{\textquoteright}) was higher off the coast of southern Ireland (ICES division 7.g). Seasonal and life-history trait differences were also observed. From the fisheries-dependent data, wider skate distributions than previously studied were modelled. Although the species do co-occur, spatio-temporal differences between these species were observed. This study contributes to a greater understanding of skate habitat during their different life history stages, and indicates reasons for R. undulata{\textquoteright}s increased vulnerability than R. clavata and R. montagui. Information from the distribution models could be used for specific spatio-temporal management measures. Better understanding of the distribution of species can also help reduce bycatch of protected species such as R. undulata.},
	keywords = {Distribution modelling, Elasmobranchs, Fisheries management, Habitat, IUCN red list species, Life history traits},
	issn = {0079-6611},
	doi = {https://doi.org/10.1016/j.pocean.2019.102256},
	url = {http://www.sciencedirect.com/science/article/pii/S0079661119304367},
	author = {Sophie A.M. Elliott and Alexandre Carpentier and Eric Feunteun and Thomas Trancart}
}
@article {6737,
	title = {Distribution of anguillid leptocephali and possible spawning areas in the South Pacific Ocean},
	journal = {Progress in Oceanography},
	volume = {180},
	year = {2019},
	pages = {102234},
	abstract = {Seven South Pacific anguillid eel species live from New Guinea to French Polynesia, but their spawning areas and life histories are mostly unknown despite previous sampling surveys. A July{\textendash}October 2016 research cruise was conducted to study the spawning areas and times, and larval distributions of South Pacific anguillid eels, which included a short 155{\textdegree}E station-line northeast of New Guinea and five long transects (5{\textendash}25{\textdegree}S, 160{\textdegree}E{\textendash}140{\textdegree}W) crossing the South Equatorial (SEC) and other currents. This survey collected nearly 4000 anguilliform leptocephali at 179 stations using an Isaacs-Kidd Midwater Trawl accompanied by 104 CTD casts. Based on morphometric observations and DNA sequencing, 74 anguillid leptocephali were collected, which in the southern areas included 29 larvae of six species: Anguilla bicolor pacifica, A. marmorata, A. australis, A. reinhardtii, A. megastoma,and A. obscura (all anguillid species of the region were caught except A. dieffenbachii). Small A. australis (9.0{\textendash}16.8\&nbsp;mm) and A. reinhardtii (12.4, 12.5\&nbsp;mm) leptocephali were collected south of the Solomon Islands, other A. australis (10.8{\textendash}12.0\&nbsp;mm) larvae were caught northwest of Fiji along with an A. obscura (20.0\&nbsp;mm) larva, and an A. marmorata (7.8\&nbsp;mm) larva was collected near Samoa. Considering collection sites, larval ages from otolith analysis, and westward SEC drift, multiple spawning locations occurred from south of the Solomon Islands and the Fiji area (16{\textendash}20\&nbsp;days old larvae) to near Samoa (19\&nbsp;days old larva) during June and July in areas where high-salinity Subtropical Underwater (STUW, 150\&nbsp;m depth) and the warm, low-salinity surface Fresh Pool were present. Five long hydrographic sections showed the strong Fresh Pool in the west and the STUW formation area in the east.},
	keywords = {Early life history, Freshwater eels, Migration, otolith, South Pacific, Spawning},
	issn = {0079-6611},
	doi = {https://doi.org/10.1016/j.pocean.2019.102234},
	url = {http://www.sciencedirect.com/science/article/pii/S0079661119304148},
	author = {Mari Kuroki and Michael J. Miller and Eric Feunteun and Pierre Sasal and Timothy Pikering and Yu-San Han and Elisabeth Faliex and Anthony Acou and Aur{\'e}lie Dessier and Robert Schabetsberger and Shun Watanabe and Tatsuya Kawakami and Hiroaki Onda and Takatoshi Higuchi and Aya Takeuchi and Madoka Shimizu and Chinthaka A. Hewavitharane and Seishi Hagihara and Terumasa Taka and Shingo Kimura and Noritaka Mochioka and Tsuguo Otake and Katsumi Tsukamoto}
}
@article {7898,
	title = {Does Addition of Perch Larvae as Prey Affect the Growth, Development and Cannibalism Rate of Pikeperch Larvae?},
	journal = {Fishes},
	volume = {4},
	year = {2019},
	month = {Jan-03-2019},
	pages = {21},
	abstract = {Cannibalism occurs in many cultured fish species, especially at the larval and juvenile stages of piscivorous taxa. In farmed percid species, such as pikeperch (Sander lucioperca), intra-cohort cannibalism is a major issue inducing significant losses of the initial stocking density during the first weeks of rearing. Therefore, the present study was designed to investigate the effects of perch larvae (Perca fluviatilis) as live prey on growth, survival and cannibalism in pikeperch larvae under experimental conditions. Additionally, zootechnical and behavioural variables linked to aggressiveness (S postures, attacks, bites and ingestion), and group structures were considered. The survival rate was not different between the two groups (72\% with prey vs. 69\% without prey), but the cannibalism rate was higher in the group with the prey (28\% vs. 10\%). The means of final weight and length of pikeperch larvae were higher in the group fed with perch larvae, but size heterogeneity measured by the coefficients of variation for these two parameters did not differ. The specific growth rate was higher in the group fed with perch larvae, but there was no difference between the two groups concerning Fulton{\textquoteright}s condition factor. Among all the behavioural variables (aggressiveness, group structure), none differed between the two groups.},
	keywords = {aggressiveness, Cannibalism, forage prey, Growth, Sander lucioperca, size heterogeneity},
	doi = {10.3390/fishes4010021},
	url = {https://www.mdpi.com/2410-3888/4/1/21},
	author = {Cortay, A and Tatiana Colchen and Fontaine, P and Pasquet, A}
}
@article {8403,
	title = {Does Loire grayling represent a distinct species ?},
	journal = {Frontiers in Marine Science},
	volume = {6},
	year = {2019},
	month = {Jan-01-2019},
	doi = {10.3389/conf.fmars.2019.07.00070},
	url = {http://www.frontiersin.org/Community/AbstractDetails.aspx?ABS_DOI=10.3389\%2fconf.fmars.2019.07.00070},
	author = {Persat, Henri and Denys, Ga{\"e}l and Froufe, Elsa and Secci-Petretto, Giulia and Weiss, Steven Weiss}
}
@article {Fath20191,
	title = {Ecological network analysis metrics: The need for an entire ecosystem approach in management and policy},
	journal = {Ocean and Coastal Management},
	volume = {174},
	year = {2019},
	note = {cited By 8},
	pages = {1-14},
	publisher = {Elsevier Ltd},
	abstract = {In this paper, we identified seven ecological network analysis (ENA) metrics that, in our opinion, have high potential to provide useful and practical information for environmental decision-makers and stakeholders. Measurement and quantification of the network indicators requires that an ecosystem level assessment is implemented. The ENA metrics convey the status of the ecological system state variables, and mostly, the flows and relations between the various nodes of the network. The seven metrics are: 1) Average Path Length (APL), 2) Finn Cycling Index (FCI), 3) Mean Trophic level (MTL), 4) Detritivory to Herbivory ratio (D:H), 5) Keystoneness, 6) Structural Information (SI), and 7) Flow-based Information indices. The procedure for calculating each metric is detailed along with a short evaluation of their potential assessment of environmental status. {\textcopyright} 2019 Elsevier Ltd},
	keywords = {coastal zone, Cycling, Decision making, ecological approach, Ecological network analysis, ecosystem approach, ecosystem management, Ecosystems, environmental policy, food web, Food webs, Marine and coastal environments, Marine environment, network analysis, policy implementation, stakeholder, Trophic length},
	issn = {09645691},
	doi = {10.1016/j.ocecoaman.2019.03.007},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0964569118305969},
	author = {Fath, B.D. and H Asmus and R. Asmus and Baird, D. and Borrett, S.R. and de Jonge, V.N. and Ludovisi, A. and Nathalie Niquil and Scharler, U.M. and Sch{\"u}ckel, U. and Wolff, M.}
}
@book {Prouzet201969,
	title = {The European eel (Anguilla anguilla) in France: An example of close cooperation among researchers and fishers to study and manage an endangered species},
	series = {Oceanography Challenges to Future Earth: Human and Natural Impacts on our Seas},
	year = {2019},
	note = {cited By 0},
	pages = {69-93},
	doi = {10.1007/978-3-030-00138-4_7},
	url = {https://www.springerprofessional.de/en/the-european-eel-anguilla-anguilla-in-france-an-example-of-close/16484968},
	author = {Prouzet, P. and Amilhat, E. and Boisneau, C. and Boisneau, P. and Eric Feunteun and Michelet, N.}
}
@article {8554,
	title = {Fine scale geographic residence and annual primary production drive body condition of wild immature green turtles ( <i>Chelonia mydas</i>               ) in Martinique Island (Lesser Antilles)},
	journal = {Biology Open},
	year = {2019},
	month = {Jan-01-2019},
	doi = {10.1242/bio.048058},
	url = {https://journals.biologists.com/bio/article/doi/10.1242/bio.048058/266150/Fine-scale-geographic-residence-and-annual-primary},
	author = {Bonola, Marc and Girondot, Marc and Robin, Jean-Patrice and Martin, Jordan and Siegwalt, Flora and Jeantet, Lor{\`e}ne and Lelong, Pierre and Grand, Cl{\'e}ment and Chambault, Philippine and Etienne, Denis and Gresser, Julie and Hielard, Ga{\"e}lle and Alexandre, Arqu{\'e} and R{\'e}gis, Sidney and Nicolas, Lecerf and Frouin, C{\'e}dric and Lefebvre, Fabien and Sutter, Emmanuel and Vedie, Fabien and Barnerias, Cyrille and Laurent, Thieulle and Bordes, Robinson and Guimera, Christelle and Aubert, Nathalie and Bouaziz, Myriam and Pinson, Adrien and Fr{\'e}d{\'e}ric, Flora and Matthieu, Duru and Benhalilou, Abdelwahab and C{\'e}line, Murgale and Maillet, Thomas and Andreani, Lucas and Campistron, Guilhem and Sikora, Maxym and Rateau, Fabian and Francis, George and Joffrey, Eggenspieler and Woignier, Thierry and All{\'e}nou, Jean-Pierre and Louis-Jean, Laurent and Chanteur, B{\'e}n{\'e}dicte and B{\'e}ranger, Christelle and Crillon, Jessica and Brador, Aude and Habold, Caroline and Le Maho, Yvon and Chevallier, Damien}
}
@article {6683,
	title = {Fishery discards do not compensate natural prey shortage in Northern gannets from the English Channel},
	journal = {Biological Conservation},
	volume = {236},
	year = {2019},
	month = {Jan-08-2019},
	pages = {375 - 384},
	issn = {00063207},
	doi = {10.1016/j.biocon.2019.05.040},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0006320718310930},
	author = {Le Bot, Tangi and Lescro{\"e}l, Am{\'e}lie and Fort, J{\'e}r{\^o}me and Clara P{\'e}ron and Gimenez, Olivier and Provost, Pascal and Gr{\'e}millet, David}
}
@article {6018,
	title = {Functional divergence of thyrotropin beta-subunit paralogs gives new insights into salmon smoltification metamorphosis},
	journal = {Scientific Reports},
	volume = {9},
	year = {2019},
	pages = {4561},
	author = {Fleming, Mitchell S and Maugars, Gersende and Lafont, Anne-Gaelle and Rancon, Jocelyn and Fontaine, Romain and Nourizadeh-Lillabadi, Rasoul and Weltzien, Finn-Arne and Santidrian Yebra-Pimentel, Elena and Dirks, Ron and McCormick, Stephen D and Rousseau, Karine and Martin, Patrick and Sylvie Dufour}
}
@article {7095,
	title = {The Genomic Substrate for Adaptive Radiation: Copy Number Variation across 12 Tribes of African Cichlid Species},
	journal = {Genome Biology and Evolution},
	volume = {11},
	year = {2019},
	month = {Jan-10-2019},
	pages = {2856 - 2874},
	abstract = {The initial sequencing of five cichlid genomes revealed an accumulation of genetic variation, including extensive copy number variation in cichlid lineages particularly those that have undergone dramatic evolutionary radiation. Gene duplication has the potential to generate substantial molecular substrate for the origin of evolutionary novelty. We use array-based comparative heterologous genomic hybridization to identify copy number variation events (CNVEs) for 168 samples representing 53 cichlid species including the 5 species for which full genome sequence is available. We identify an average of 50-100 CNVEs per individual. For those species represented by multiple samples, we identify 150-200 total CNVEs suggesting a substantial amount of intraspecific variation. For these species, only \~{}10\% of the detected CNVEs are fixed. Hierarchical clustering of species according to CNVE data recapitulates phylogenetic relationships fairly well at both the tribe and radiation level. Although CNVEs are detected on all linkage groups, they tend to cluster in "hotspots" and are likely to contain and be flanked by transposable elements. Furthermore, we show that CNVEs impact functional categories of genes with potential roles in adaptive phenotypes that could reasonably promote divergence and speciation in the cichlid clade. These data contribute to a more complete understanding of the molecular basis for adaptive natural selection, speciation, and evolutionary radiation.},
	keywords = {adaptive radiation, cichlid, copy number variation, gene duplication, genomic architecture},
	doi = {10.1093/gbe/evz185},
	url = {https://academic.oup.com/gbe/article/11/10/2856/5556293},
	author = {Faber-Hammond, Joshua J and Bezault, Etienne and Lunt, David H and Joyce, Domino A and Renn, Suzy C P}
}
@article {6745,
	title = {High genetic diversity and lack of pronounced population structure in five species of sympatric Pacific eels},
	journal = {Fisheries Management and Ecology},
	volume = {26},
	year = {2019},
	pages = {31-41},
	abstract = {Understanding the population structure of tropical anguillids residing in the Pacific is vital for their conservation management. Here, the population genetic structure of five sympatric freshwater eels (Anguilla marmorata Quoy \&amp; Gaimard, A.\&nbsp;megastoma Kaup, A.\&nbsp;obscura Steindachner, A.\&nbsp;reinhardtii G{\"u}nther and A.\&nbsp;australis Richardson) across 11 western South Pacific (WSP) islands was investigated based on partial nucleotide sequences of the mtDNA control region and the nuclear GTH2b genes of 288 newly collected samples jointly with existing sequences. WSP anguillids are characterised by overall high levels of genetic diversity. Both mtDNA and nuclear sequences provided no evidence for distinct geographic clines or barriers in any of the species across the WSP. The occurrence of admixed individuals between A.\&nbsp;marmorata and A.\&nbsp;megastoma was confirmed, and a new possible occurrence of a further species was revealed (A.\&nbsp;interioris Whitley on Bougainville Island). All species showed evidence for demographic population growth in the Pleistocene, and a subsequent population reduction for A.\&nbsp;megastoma. Common spawning grounds and mixing of larvae by ocean currents could promote the lack of pronounced isolation by distance, a finding that has significant implications for the future management of anguillids in the area.},
	keywords = {genetic homogeneity, hybridisation, recruitment, Spawning, Sympatry, tropical eels},
	doi = {10.1111/fme.12287},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/fme.12287},
	author = {Gubili, Chrysoula and Robert Schabetsberger and Poellabauer, Christine and Bates, Becky and Wagstaff, Rosa M. and Woodward, Lewis M. and Sichrowsky, Ursula and Scheck, Alexander and Boseto, David T. and Eric Feunteun and Anthony Acou and Jehle, Robert}
}
@article {6117,
	title = {Histone Methylation Participates in Gene Expression Control during the Early Development of the Pacific Oyster .},
	journal = {Genes (Basel)},
	volume = {10},
	year = {2019},
	month = {2019 09 10},
	abstract = {<p>Histone methylation patterns are important epigenetic regulators of mammalian development, notably through stem cell identity maintenance by chromatin remodeling and transcriptional control of pluripotency genes. But, the implications of histone marks are poorly understood in distant groups outside vertebrates and ecdysozoan models. However, the development of the Pacific oyster is under the strong epigenetic influence of DNA methylation, and histone-demethylase orthologues are highly expressed during . early life. This suggests a physiological relevance of histone methylation regulation in oyster development, raising the question of functional conservation of this epigenetic pathway in lophotrochozoan. Quantification of histone methylation using fluorescent ELISAs during oyster early life indicated significant variations in monomethyl histone H3 lysine 4 (H3K4me), an overall decrease in H3K9 mono- and tri-methylations, and in H3K36 methylations, respectively, whereas no significant modification could be detected in H3K27 methylation. Early in vivo treatment with the JmjC-specific inhibitor Methylstat induced hypermethylation of all the examined histone H3 lysines and developmental alterations as revealed by scanning electronic microscopy. Using microarrays, we identified 376 genes that were differentially expressed under methylstat treatment, which expression patterns could discriminate between samples as indicated by principal component analysis. Furthermore, Gene Ontology revealed that these genes were related to processes potentially important for embryonic stages such as binding, cell differentiation and development. These results suggest an important physiological significance of histone methylation in the oyster embryonic and larval life, providing, to our knowledge, the first insights into epigenetic regulation by histone methylation in lophotrochozoan development.</p>
},
	issn = {2073-4425},
	doi = {10.3390/genes10090695},
	author = {Alexandre Fellous and Lefranc, Lorane and Jouaux, Aude and Goux, Didier and Pascal Favrel and Riviere, Guillaume}
}
@article {6849,
	title = {Histone Methylation Participates in Gene Expression Control during the Early Development of the Pacific Oyster Crassostrea gigas},
	journal = {Genes},
	volume = {10},
	year = {2019},
	month = {Jan-09-2019},
	pages = {695},
	doi = {10.3390/genes10090695},
	url = {https://www.mdpi.com/2073-4425/10/9/695},
	author = {Fellous, Alexandre and Le Franc, Lorane and Jouaux, Aude and Goux, Didier and Pascal Favrel and Guillaume Rivi{\`e}re}
}
@article {Lema2019731,
	title = {Inter- and Intra-Specific Transcriptional and Phenotypic Responses of Pseudo-nitzschia under Different Nutrient Conditions},
	journal = {Genome Biology and Evolution},
	volume = {11},
	number = {3},
	year = {2019},
	note = {cited By 1},
	pages = {731-747},
	publisher = {Oxford University Press},
	abstract = {Untangling thefunctionalbasis of divergencebetweenclosely relatedspecies is a steptowardunderstanding speciesdynamicswithin communities at both the evolutionary and ecological scales. We investigated cellular (i.e., growth, domoic acid production, and nutrient consumption) and molecular (transcriptomic analyses) responses to varying nutrient concentrations across several strains belonging to three species of the toxic diatomgenus Pseudo-nitzschia. Threemain resultswere obtained. First, strains fromthe same species displayed similar transcriptomic, but not necessarily cellular, responses to the experimental conditions. It showed the importance of considering intraspecific diversity to investigate functional divergence between species. Second, a major exception to the first findingwas a strain recently isolated fromthe natural environment and displaying contrasting gene expression patterns related to cell motility and domoic acid production. This result illustrated the profound modifications thatmay occurwhen transferring a cell fromthe natural to the in vitro environment and asks for future studies to better understand the influence of culture duration and life cycleon expression patterns. Third, transcriptomic responsesweremore similarbetween the two speciesdisplaying similar ecology in situ, irrespective of the genetic distance. This was especially true formolecular responses related to TCA cycle, photosynthesis, and nitrogen metabolism. However, transcripts related to phosphate uptake were variable between species. It highlighted the importance of considering both overall genetic distance and ecological divergence to explain functional divergence between species. {\textcopyright} The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.},
	keywords = {analogs and derivatives, Biological Evolution, comparative study, Diatom, Diatoms, Domoic acid, evolution, kainic acid, Metabolism, Multigene Family, Nutrients, Phenotype, Physiology},
	issn = {17596653},
	doi = {10.1093/gbe/evz030},
	url = {https://academic.oup.com/gbe/article/11/3/731/5332980},
	author = {Lema, Kimberley A. and Metegnier, G. and Qu{\'e}r{\'e}, J. and Latimier, Marie and Agn{\`e}s Youenou and Lambert, Christophe and Juliette Fauchot and Le Gac, Mickael and Costantini, M.}
}
@article {7899,
	title = {Intra-cohort cannibalism in early life stages of pikeperch},
	journal = {Aquaculture Research},
	volume = {50},
	year = {2019},
	month = {Jan-03-2019},
	pages = {915 - 924},
	abstract = {Cannibalism has been described in 390 teleost fish species belonging to 104 families. In rearing conditions, intra-cohort cannibalism is one of the major bottlenecks during the early life stages of pikeperch (Sander lucioperca). This study aims to describe pre- cisely the occurrence and the onset of cannibalism of this species during the first two post-hatching months. In a first step, the cannibalistic behaviour was analysed through observations in three experiments. In each experiment, the number of can-\&nbsp;nibalistic cases was similar. From 14 to 48 days post-hatching (dph), more than 60 \%\&nbsp;of prey ingestions were realized by tail-first, but after 48 dph, the number of prey ingestions by head-first increased. In a second step, the behavioural sequence exhib- ited to attack and to capture a conspecific was analysed, taking into account the size ratio between the cannibal and its prey. The behavioural sequence to capture was always the same, similar to a predatory sequence and it seems that the cannibal chose its prey about 10 s before attacking. Moreover, prey choice by a cannibal was based more on the size ratio between the cannibal and its prey than the previous activity of the potential prey. These new results could lead to solutions to decrease cannibalism in pikeperch rearing.},
	keywords = {cannibalistic behaviour, early development, intra-specific predation, prey selection, teleost},
	doi = {10.1111/are.2019.50.issue-310.1111/are.13966},
	url = {http://doi.wiley.com/10.1111/are.2019.50.issue-3},
	author = {Tatiana Colchen and Fontaine, P. and Ledor{\'e}, Y. and Teletchea, F. and Pasquet, A.}
}
@article {8556,
	title = {Migratory flights and local wintering movements of Greylag Geese <i>Anser anser</i>               in western Europe},
	journal = {Bird Study},
	volume = {66},
	year = {2019},
	month = {Mar-04-2019},
	pages = {264 - 268},
	issn = {0006-3657},
	doi = {10.1080/00063657.2019.1620171},
	url = {https://www.tandfonline.com/doi/full/10.1080/00063657.2019.1620171},
	author = {Boos, Mathieu and Nesterova, Anna P. and Chevallier, Damien and Follestad, Arne}
}
@proceedings {8400,
	title = {Mitogenome Phylogeny of Thymallus (graylings) - Species delineation},
	year = {2019},
	publisher = {Frontiers in Marine Sciences},
	address = {Lausanne},
	abstract = {The genus Thymallus (grayling) is distributed over much of central and northern Europe, Asia and North America in generally cold lacustrine and riverine environments. Like all salmonid fishes, grayling have a tetraploid ancestry, which attracts research interest on the ongoing process of re-diploidiazation and its potential effects on lineage diversification. Grayling are also of increasing conservation concern, especially in Europe, as their habitats are the target of multiple anthropogenic pressures. Although in the past 15 years the recognized species diversity within the genus has increased, the genetic relationships among these species remain to a degree unexplored. The last comprehensive phylogeny of Thymallus was published prior the recognition of several new species and relies only on two mtDNA genes. At present, up to 18 species have been listed. Here we inferred the phylogeny of the genus Thymallus using complete newly sequenced mitogenomes, generated through NGS and non NGS-based techniques, as well as published sources. Using this mitogenome phylogeny as well as all available mtDNA sequences for several common genes, we applied several different species delineation methods to gain some insight into the genetic support for the current species spectrum. We combine these results with a brief overview of the systematic and taxonomic status of each species or lineage, and review as well what is known concerning their range and phenotypic variability. The results serve as an initial step in reviewing the taxonomy of the entire genus and will help point out the knowledge deficits that must be eliminated before a comprehensive picture of the grayling diversity throughout the world can be achieved.},
	author = {Secci-Petretto, Giulia and Weiss, Steven J. and Gomes-Dos-Santos, Andr{\'e} and Persat, Henri and Denys, Ga{\"e}l P.J. and Froufe, Elsa}
}
@article {6805,
	title = {Modern drought conditions in western Sahel unprecedented in the past 1600~years},
	journal = {Climate Dynamics},
	volume = {52},
	year = {2019},
	month = {Jan-02-2019},
	pages = {1949 - 1964},
	abstract = {As climate model uncertainties remain very large for future rainfall in the Sahel, a multi-centennial perspective is required to assess the situation of current Sahel climate in the context of global warming. We present here the first record of hydroclimatic variability over the past 1600\&nbsp;years in Senegal, obtained from stable oxygen isotope analyses (δ18O) in archaeological shell middens from the Saloum Delta. During the preindustrial period, the region was relatively humid, with maximum humidity reached during the period from AD 1500 to AD 1800, referred to as the Little Ice Age. A significant negative link is observed at the centennial scale between global temperature and humidity in the Sahel that is at odds with the expected effects of latitudinal shifts of the intertropical convergence zone during the last millennium. In the context of the past 1600\&nbsp;years, the Western Sahel appears to be experiencing today unprecedented drought conditions. The rapid aridification that started ca. AD 1800 and the recent emergence of Sahel drought from the natural variability point to an anthropogenic forcing of Sahel drying trend. This new long-term perspective suggests that the recovery of Sahel rainfall in the last decade may only result from short-term internal variability, and supports climate models that predict an increase of Sahel drought under future greenhouse climate.},
	issn = {0930-7575},
	doi = {10.1007/s00382-018-4311-3},
	url = {https://hal.archives-ouvertes.fr/hal-02349321},
	author = {Carr{\'e}, Matthieu and Azzoug, Moufok and Zaharias, Paul and Camara, Abdoulaye and Cheddadi, Rachid and Chevalier, Manuel and Fiorillo, Denis and Gaye, Amadou T. and Janicot, Serge and Khodri, Myriam and Lazar, Alban and Claire E. Lazareth and Mignot, Juliette and Mitma Garc{\'\i}a, Nancy and Patris, Nicolas and Perrot, Oc{\'e}ane and Wade, Malick}
}
@article {5782,
	title = {Molecular evolution and functional characterisation of insulin related peptides in molluscs: Contributions of Crassostrea gigas genomic and transcriptomic-wide screening},
	journal = {Journal of Comparative Endocrinology},
	volume = {271},
	year = {2019},
	pages = {15-29},
	type = {research},
	abstract = {<p>Insulin Related Peptides (IRPs) belong to the insulin superfamily and possess a typical structure with two chains,<br />
B and A, linked by disulphide bonds. As the sequence conservation is usually low between members, IRPs are<br />
classified according to the number and position of their disulphide bonds. In molluscan species, the first IRPs<br />
identified, named Molluscan Insulin-related Peptides (MIPs), exhibit four disulphide bonds. The genomic and<br />
transcriptomic data screening in the Pacific oyster Crassostrea gigas (Mollusc, Bivalvia) allowed us to identify six<br />
IRP sequences belonging to three structural groups. Cg-MIP1 to 4 have the typical structure of MIPs with four<br />
disulphide bonds. Cg-ILP has three disulphide bonds like vertebrate Insulin-Like Peptides (ILPs). The last one,<br />
Cg-MILP7 has a significant homology with Drosophila ILP7 (DILP7) associated with two additional cysteines<br />
allowing the formation of a fourth disulphide bond. The phylogenetic analysis points out that ILPs may be the<br />
most ancestral form. Moreover, it appears that ILP7 orthologs are probably anterior to lophotrochozoa and<br />
ecdysozoa segregation. In order to investigate the diversity of physiological functions of the oyster IRPs, we<br />
combine in silico expression data, qPCR measurements and in situ hybridization. The Cg-ilp transcript, mainly<br />
detected in the digestive gland and in the gonadal area, is potentially involved in the control of digestion and<br />
gametogenesis. The expression of Cg-mip4 is mainly associated with the larval development. The Cg-mip<br />
transcript shared by the Cg-MIP1, 2 and 3, is mainly expressed in visceral ganglia but its expression was also<br />
observed in the gonads of mature males. This pattern suggested the key roles of IRPs in the control of sexual<br />
reproduction in molluscan species.</p>
},
	author = {Ma{\"e}va Cherif{\textendash}Feildel and Clothilde Berthelin and B{\'e}atrice Adeline and Guillaume Rivi{\`e}re and Pascal Favrel and Kristell Kellner-Cousin}
}
@article {5954,
	title = {The phylogenetic origin and evolution of acellular bone in teleost fishes: insights into osteocyte function in bone metabolism},
	journal = {Biological Reviews},
	year = {2019},
	abstract = {<p>ABSTRACT Vertebrate bone is composed of three main cell types: osteoblasts, osteoclasts and osteocytes, the latter being by far the most numerous. Osteocytes are thought to play a fundamental role in bone physiology and homeostasis, however they are entirely absent in most extant species of teleosts, a group that comprises the vast majority of bony {\textquoteleft}fishes{\textquoteright}, and approximately half of vertebrates. Understanding how this acellular (anosteocytic) bone appeared and was maintained in such an important vertebrate group has important implications for our understanding of the function and evolution of osteocytes. Nevertheless, although it is clear that cellular bone is ancestral for teleosts, it has not been clear in which specific subgroup the osteocytes were lost. This review aims to clarify the phylogenetic distribution of cellular and acellular bone in teleosts, to identify its precise origin, reversals to cellularity, and their implications. We surveyed the bone type for more than 600 fossil and extant ray-finned fish species and optimised the results on recent large-scale molecular phylogenetic trees, estimating ancestral states. We find that acellular bone is a probable synapomorphy of Euteleostei, a group uniting approximately two-thirds of teleost species. We also confirm homoplasy in these traits: acellular bone occurs in some non-euteleosts (although rarely), and cellular bone was reacquired several times independently within euteleosts, in salmons and relatives, tunas and the opah (Lampris sp.). The occurrence of peculiar ecological (e.g. anadromous migration) and physiological (e.g. red-muscle endothermy) strategies in these lineages might explain the reacquisition of osteocytes. Our review supports that the main contribution of osteocytes in teleost bone is to mineral homeostasis (via osteocytic osteolysis) and not to strain detection or bone remodelling, helping to clarify their role in bone physiology.</p>
},
	keywords = {acellular bone, Actinopterygii, ancestral state reconstruction, anosteocytic bone, bone remodelling, endothermy, osteocyte, Salmoniformes, Scombridae, teleostei},
	doi = {10.1111/brv.12505},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/brv.12505},
	author = {Davesne, Donald and Fran{\c c}ois J Meunier and Schmitt, Armin D. and Friedman, Matt and Otero, Olga and Benson, Roger B. J.}
}
@article {5833,
	title = {{Prediction of unprecedented biological shifts in the global ocean}},
	journal = {Nature Climate Change},
	volume = {9},
	year = {2019},
	month = {mar},
	pages = {237{\textendash}243},
	abstract = {<p>Impermanence is an ecological principle<sup>1</sup> but there are times when changes occur nonlinearly as abrupt community shifts (ACSs) that transform the ecosystem state and the goods and services it provides<sup>2</sup>. Here, we present a model based on niche theory<sup>3</sup> to explain and predict ACSs at the global scale. We test our model using 14 multi-decadal time series of marine metazoans from zooplankton to fish, spanning all latitudes and the shelf to the open ocean. Predicted and observed fluctuations correspond, with both identifying ACSs at the end of the 1980s<sup>4,5,6,7</sup> and 1990s<sup>5,8</sup>. We show that these ACSs coincide with changes in climate that alter local thermal regimes, which in turn interact with the thermal niche of species to trigger long-term and sometimes abrupt shifts at the community level. A large-scale ACS is predicted after 2014{\textemdash}unprecedented in magnitude and extent{\textemdash}coinciding with a strong El Ni{\~n}o event and major shifts in Northern Hemisphere climate. Our results underline the sensitivity of the Arctic Ocean, where unprecedented melting may reorganize biological communities<sup>5,9</sup>, and suggest an increase in the size and consequences of ACS events in a warming world.</p>
},
	issn = {1758-678X},
	doi = {10.1038/s41558-019-0420-1},
	url = {http://www.nature.com/articles/s41558-019-0420-1},
	author = {Gr{\'e}gory Beaugrand and Alessandra Conversi and Angus Atkinson and Jim E. Cloern and Sanae Chiba and Serena Fonda-Umani and Richard R Kirby and Greene, C. H. and Goberville, Eric and Otto, S. A. and Philip Chris Reid and Stemmann, L. and Martin Edwards}
}
@article {6107,
	title = {Seasonal oxygen isotope variations in freshwater bivalve shells as recorders of Amazonian rivers hydrogeochemistry},
	journal = {Isotopes in Environmental and Health Studies},
	year = {2019},
	pages = {1-15},
	type = {Journal Article},
	abstract = {<p>Freshwater bivalve shell oxygen isotope values (δ<sup>18</sup>O<sub>S</sub>) may act as a recorder of river δ<sup>18</sup>O variations that can then be interpreted in terms of hydrology (e.g. precipitation{\textendash}evaporation balance, precipitation and river discharge patterns). We investigated the potential of this proxy measured across the hinge of South American unionid shells: <em>Anodontites elongatus</em> collected in Peru and <em>A. trapesialis</em> in Brazil. The isotopic signatures were reproducible between individuals of the same species. <em>A. trapesialis</em> clearly showed a strong δ<sup>18</sup>O<sub>S</sub> cyclicity in accordance with its growth patterns while <em>A. elongatus</em> presented less clear δ<sup>18</sup>O<sub>S</sub> with lower amplitude. We confirm that the deposition of successive growth lines and increments is annual, with growth line corresponding to the wet season. Also, we suggest that low amplitude of δ<sup>18</sup>O<sub>S</sub> in the<em> A. elongatus</em> shells indicates a habitat close to the river while large amplitude of δ<sup>18</sup>O<sub>S</sub> cycles observed in<em> A. trapesialis </em>shells would reflect a floodplain lake habitat, seasonally disconnected from the river and thus subjected to higher seasonal fluctuations in water δ<sup>18</sup>O. Considering these promising first results, future studies could be directed towards the use of fossil shells to reconstruct the past and present hydrological and geochemical conditions of the Amazon.</p>
},
	keywords = {Amazon basin, freshwater bivalve shells, hydroclimate, isotope ecology, isotope hydrology, oxygen isotopes},
	issn = {1025-6016 1477-2639},
	doi = {10.1080/10256016.2019.1666120},
	url = {https://hal.archives-ouvertes.fr/hal-02314885v1},
	author = {Gaillard, Blandine and Claire E. Lazareth and Lestrelin, Hugo and Dufour, Elise and Santos, Roberto V. and Carlos E.C. Freitas and Marc Pouilly}
}
@article {7036,
	title = {Shedding light on the migratory patterns of the Amazonian goliath catfish, <i>Brachyplatystoma platynemum</i>               , using otolith <sup>87</sup>               Sr/ <sup>86</sup>               Sr analyses},
	journal = {Aquatic Conservation: Marine and Freshwater Ecosystems},
	volume = {29},
	year = {2019},
	month = {Aug-03-2020},
	pages = {397 - 408},
	issn = {1052-7613},
	doi = {10.1002/aqc.v29.310.1002/aqc.3046},
	url = {https://onlinelibrary.wiley.com/toc/10990755/29/3},
	author = {Hauser, Marilia and Doria, Carolina R.C. and Santos, Roberto V. and Garc{\'\i}a-Vasquez, Aurea and Marc Pouilly and Pecheyran, Christophe and Ponzevera, Emmanuel and Torrente-Vilara, Gislene and B{\'e}rail, Sylvain and Panfili, Jacques and Darnaude, Audrey and Renno, Jean-Fran{\c c}ois and Garc{\'\i}a-D{\'a}vila, Carmen and Jesus Nu{\~n}ez-Rodriguez and Ferraton, Franck and Vargas, Gladys and Duponchelle, Fabrice}
}
@article {6689,
	title = {Species splitting increases estimates of evolutionary history at risk},
	journal = {Biological Conservation},
	volume = {235},
	year = {2019},
	month = {Jan-07-2019},
	pages = {27 - 35},
	issn = {00063207},
	doi = {10.1016/j.biocon.2019.03.041},
	url = {https://www.sciencedirect.com/science/article/pii/S0006320718312400},
	author = {Robuchon, Marine and Faith, Daniel P. and Julliard, Romain and Leroy, Boris and Pellens, Roseli and Robert, Alexandre and Th{\'e}venin, Charles and V{\'e}ron, Simon and Pavoine, Sandrine}
}
@article {8396,
	title = {A third European species of grayling (Actinopterygii, Salmonidae), endemic to the Loire River basin (France), Thymallus ligericus n. sp.},
	journal = {Cybium},
	volume = {43},
	year = {2019},
	pages = {233-238},
	abstract = {Loire grayling was already known to belong to a distinct lineage, compared to other European population, according to molecular data (enzymatic polymorphism, mtDNA sequencing and microsatellites). In this paper, we consider this lineage as a new species, Thymallus ligericus n. sp., which is endemic to the Loire drainage (France). Compared with the other species, T. ligericus n. sp. is characterized by a more elongated body, the presence of a pointed snout and a strait or convex snout profile, a more inferior mouth with a transversal aperture and a fleshier upper lip, usually more than 50 to several hundreds black dots on the flanks, a shorter head (20.0-23.7\% SL), smaller occipital and orbital depths of the head (54.8-71.7\% HL and 43.5-53.4\% HL, respectively) and a shorter horizontal eye diameter (22.6-26.3\% HL).},
	author = {Persat, Henri and Weiss, Steven J. and Froufe, Elsa and Secci-Petretto, Giulia and Denys, Ga{\"e}l}
}
@article {5406,
	title = {Adhesive gland transcriptomics uncovers a diversity of genes involved in glue formation in marine tube-building polychaetes},
	journal = {Acta Biomaterialia},
	year = {2018},
	abstract = {<p class="rtejustify">Tube-building sabellariid polychaetes are hermatypic organisms capable of forming vast reefs in highly turbulent marine habitats. Sabellariid worms assemble their tube by gluing together siliceous and calcareous clastic particles using a polyelectrolytic biocement. Here, we performed transcriptomic analyses to investigate the genes that are differentially expressed in the parathorax region, which contains the adhesive gland and tissues, from the rest of the body. We found a large number of candidate genes to be involved in the composition and formation of biocement in two species: Sabellaria alveolata and Phragmatopoma caudata. Our results indicate that the glue is likely to be composed by a large diversity of cement-related proteins, including Poly(S), GY-rich, H-repeat and miscellaneous categories. However, sequences divergence and differences in expression profiles between S. alveolata and P. caudata, of cement-related proteins may reflect adaptation to the type of substratum used to build their tube, and/or to their habitat (temperate vs tropical, amplitude of pH, salinity ...). Related to the L-DOPA metabolic pathways and linked with the genes that were differentially expressed in the parathorax region, we found that tyrosinase and peroxidase gene families may have undergone independent expansion in the two Sabellariidae species investigated. Our data also reinforce the importance of protein modifications in cement formation. Altogether these new genomic resources help to identify novel transcripts encoding for cement-related proteins, but also important enzymes putatively involved in the chemistry of the adhesion process, such as kinases, and may correspond to new targets to develop biomimetic approaches.</p>
},
	doi = {doi.org/10.1016/j.actbio.2018.03.037},
	author = {Jean-Philippe Buffet and Erwan Corre and Evelyne Duvernois-Berthet and J{\'e}r{\^o}me Fournier and Pascal Jean Lopez}
}
@article {5630,
	title = {Age and growth of the Amazonian migratory catfish Brachyplatystoma rousseauxii in the Madeira River basin before the construction of dams},
	journal = {Neotropical Ichthyology},
	volume = {16},
	year = {2018},
	pages = {e170130, 2018},
	abstract = {<p class="rtejustify">The goliath catfish <em>Brachyplatystoma rousseauxii</em> has crucial economical and ecological functions in the Amazon basin. Although its life history characteristics have been studied in the Amazon, there is little information in the Madeira River basin, which holds genetically distinct populations and where dams were recently built. Using fish collected in Bolivia, Brazil and Peru, this study provides a validation of growth rings deposition and details the growth patterns of <em>B. rousseauxii</em> in the Madeira before the dams{\textquoteright} construction. Age structure and growth parameters were determined from 497 otolith readings. The species exhibits two growth rings per year and sampled fish were between 0 and 16 years old. In the Brazilian portion of the basin, mainly young individuals below 5 years old were found, whereas older fish (\&gt; 5 years) were caught only in the Bolivian and Peruvian stretches, indicating that after migrating upstream to reproduce, adults remain in the headwaters of the Madeira River. Comparing with previous publications, <em>B. rousseauxii</em> had a slower growth and 20 cm lower maximum standard length in the Madeira River than in the Amazon River. This study provides a baseline for future evaluation of changes in population dynamics of the species following dams closure.</p>

<p class="rtejustify">Palabras clave:\&nbsp;Amazon; Biannual rings; Goliath catfish; Life cycle; Otolith</p>
},
	doi = {10.1590/1982-0224-20170130},
	author = {Hauser, Marilia and Doria, C R C and Melo, L and Santos, A and Ayala, D and Nogueira, L and Amadio, S. A. and Fabr{\'e}, N and Torrente-Vilara, Gislene and Garc{\'\i}a V{\'a}squez, A and Renno, Jean-Francois and Carvajal-Vallejos, F M and Alonso, J-C and N{\'u}{\~n}ez-Rodr{\'\i}guez, Jes{\'u}s and Fabrice Duponchelle}
}
@article {5754,
	title = {Algal Bloom Exacerbates Hydrogen Sulfide and Methylmercury Contamination in the Emblematic High-Altitude Lake Titicaca},
	journal = {Geosciences},
	volume = {8},
	year = {2018},
	abstract = {<p>Algal blooms occurrence is increasing around the globe. However, algal blooms are uncommon in dominantly oligotrophic high-altitude lakes. Lake Titicaca, the largest freshwater lake in South America, located at 3809 m above the sea level, experienced its first recorded algal bloom covering a large fraction of its southern shallow basin in March{\textendash}April 2015. The dominant algae involved in the bloom was Carteria sp. Water geochemistry changed during the bloom with a simultaneous alkalinization in heterotrophic parts of the lake and acidification in eutrophic shallow areas. A decrease in oxygen saturation (from 105 to 51\%), and a dramatic increase in hydrogen sulfide (H2S) concentrations (from \&lt;0.02 to up to 155 {\textmu}g.L-1) resulted in the massive death of pelagic organisms. Such changes were brought by the exacerbated activity of sulfate-reducing bacteria (SRB) in this sulfate-rich lake. Although levels in total mercury remained stable during the event, MMHg \% rose, highlighting higher conservation of produced MMHg in the water. Such an increase on MMHg \% has the potential to produce exponential changes on MMHg concentrations at the end food web due to the biomagnification process. Our physicochemical and climatological data suggest that unusually intense rain events released large amounts of nutrients from the watershed and triggered the bloom. The observed bloom offers a hint for possible scenarios for the lake if pollution and climate change continue to follow the same trend. Such a scenario may have significant impacts on the most valuable fish source in the Andean region and the largest freshwater Lake in South America. Furthermore, the event illustrates a possible fate of high altitude environments subjected to eutrophication.</p>
},
	issn = {2076-3263},
	doi = {10.3390/geosciences8120438},
	url = {http://www.mdpi.com/2076-3263/8/12/438},
	author = {Dar{\'\i}o Ach{\'a} and Gu{\'e}dron, Stephane and Amouroux, David and Point, David and Lazzaro, Xavier and Fernandez, Pablo Edgar and Sarret, G{\'e}raldine}
}
@article {5811,
	title = {{Benthic foraminifera to assess Ecological Quality Statuses in Italian transitional waters}},
	journal = {Ecological Indicators},
	volume = {84},
	year = {2018},
	abstract = {<p>Estuaries, lagoons and lakes, identified as transitional waters (TWs), are fragile ecotones at the interface between terrestrial and marine ecosystems. The assessment of their Ecological Quality status (EcoQ), required by marine legislations, is rather uncertain when based on traditional benthic macrofaunal indices. This study proposes to assess the EcoQ of marine waters using the diversity index Exp(H{\textquoteright}bc) based on living benthic foraminifera. By testing this method on datasets from five Italian TWs, we showed that EcoQ{\textquoteright}s assessment based on foraminifera reflected changes in environmental conditions. Benthic foraminifera highlighted the degradation of most, if not all, study sites, ranking most of the TWs in {\textquotedblleft}Moderate{\textquotedblright} to {\textquotedblleft}Bad{\textquotedblright} EcoQs. Although the assessment of EcoQs estimated from diversity indices was similar when based on benthic foraminifera or macrofauna, discrepancies occurred if diversity index calculated on foraminifera and sensitivity-based indices applied on macrofauna were compared. Our results demonstrated that the Exp(H{\textquoteright}bc) index based on living benthic foraminifera is a promising approach to assess EcoQs. Finally, we argue that benthic foraminifera, for their preservation potential as fossil within sediment, are a reliable option to define reference conditions and targets.</p>
},
	keywords = {Diversity index, Ecological quality status, Italian transitional waters, Living benthic foraminifera, Marine strategy framework directive, Water framework directive},
	issn = {1470160X},
	doi = {10.1016/j.ecolind.2017.07.055},
	url = {https://www.sciencedirect.com/science/article/pii/S1470160X17304685},
	author = {Vincent M.P. Bouchet and Goberville, Eric and Fabrizio Frontalini}
}
@article {7175,
	title = {Benthic species of the Kerguelen Plateau show contrasting distribution shifts in response to environmental changes},
	journal = {Ecology and Evolution},
	volume = {8},
	year = {2018},
	month = {Jan-06-2018},
	pages = {6210 - 6225},
	doi = {10.1002/ece3.2018.8.issue-1210.1002/ece3.4091},
	url = {http://doi.wiley.com/10.1002/ece3.2018.8.issue-12},
	author = {Guillaumot, Charl{\`e}ne and Fabri-Ruiz, Salom{\'e} and Martin, Alexis and Eleaume, Marc and Danis, Bruno and Feral, Jean-Pierre and Sauc{\`e}de, Thomas}
}
@article {5531,
	title = {Biofilm monitoring as a tool to assess the efficiency of artificial reefs as substrates: Toward 3D printed reefs},
	journal = {Ecological Engineering},
	volume = {120},
	year = {2018},
	pages = {230 - 237},
	abstract = {<p class="rtejustify">Habitat destruction is one of the main causes of the decline of biodiversity and of fishery resources in the marine environment. An artificial reef (AR) could be a tool for protecting or restoring these habitats and their declining biodiversity, and also help to enhance sustainable fisheries. The goal is to design non-polluting structures that best mimic the complexity of natural habitats in order to improve their service to the community. To date, the assessment of reef performance has been mostly focused on fish assemblages and species of ecological and/or socio-economic interest, and has disregarded the biofilm communities that determine the first level of an AR{\textquoteright}s trophic network. In this work, we used biofilm formation to compare the quality of substrates used as building parts for an AR, in order to optimize an eco-friendly material that will be used to design a new generation of \{ARs\} produced by giant 3D printers. The structure of the photosynthetic communities has been identified using pigment biomarkers and their production of exudates has been analysed. These polymeric substances were quantified in terms of total sugar and protein concentrations. They were further analysed in terms of amino acid content. We found no significant differences between the micro-algae communities developed on the different substrates. These photosynthetic communities were mainly composed of diatoms, prasinophytes, haptophytes, and dinoflagellates. However, we showed that the material for \{ARs\} is crucial for biofilm development, especially with regard to its secretions of sugar. The choice of an appropriate substrate for \{AR\} construction is thus of particular importance since biofilm secretions determine the organic substrate on which sessile macro-organisms will settle.</p>
},
	keywords = {Artificial reef substrates},
	issn = {0925-8574},
	doi = {https://doi.org/10.1016/j.ecoleng.2018.06.005},
	url = {https://www.sciencedirect.com/science/article/pii/S0925857418302167},
	author = {Elisabeth Riera and Lamy, Dominique and Christophe Goulard and Francour, P and C{\'e}dric Hubas}
}
@article {9382,
	title = {Carbon dynamics and inconstant porewater input in a mangrove tidal creek over contrasting seasons and tidal amplitudes},
	journal = {Geochimica et Cosmochimica Acta},
	volume = {237},
	year = {2018},
	pages = {32{\textendash}48},
	abstract = {Constraining the contribution of mangrove-derived carbon in tidal creeks is fundamental to understanding the fate of mangrove primary production and the role of mangroves as coastal carbon sinks. Porewater measurements and 24-h time series in a mangrove tidal creek were conducted during the dry and wet season, and over contrasting tidal ranges at the Can Gio Biosphere Reserve, Vietnam. Surface water carbon concentrations (dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), partial pressure of carbon dioxide (pCO2)) and their respective d13C values were correlated with radon, suggesting that porewater input drives mangrove-derived carbon in the tidal creek. Based on three complementary mixing models, porewater input contributed to about 30\% of the water volume and 46\% to 100\% of DOC and DIC pools in the tidal creek at low tide, with variabilities between seasons and tidal amplitudes. The creek carbon pool was 88\% DIC, 6\% DOC, and 6\% particulate organic carbon (POC). The pCO2 values during the wet season (2973{\textendash}16,495 latm) were on average 5-fold higher than during the dry season (584{\textendash}2946 latm). This was explained by a potential greater mineralization attributed to higher organic matter availability and residual humidity that stimulate bacterial activity, and by a potential tidal dilution changing the pCO2/DIC ratio as suggested by the Revelle factor. Consequently, average CO2 evasion from the creek was estimated at 327{\textendash}427 mmolC m{\`A}2 d{\`A}1 during the wet season and 92{\textendash}213 mmolC m{\`A}2 d{\`A}1 during the dry season, using two independent approaches. Tidal amplitude seemed to influence porewater input and its carbon loads, with a higher contribution during frequent and high tidal amplitudes (symmetric). However, the highest input occurred in a tidal cycle which was preceded by tidal cycle of low amplitude (asymmetric). We explain this ambiguity by the influence of both, rapid water turnover intensifying porewater exchange, and long water residence time enhancing carbon load in porewater.},
	issn = {00167037},
	doi = {10.1016/j.gca.2018.06.012},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016703718303272},
	author = {Taillardat, Pierre and Ziegler, Alan D. and Friess, Daniel A. and Widory, David and Truong Van, Vinh and Frank David and Thanh-Nho, Nguyen and Marchand, Cyril}
}
@article {5564,
	title = {Characterization of a tachykinin signalling system in the bivalve mollusc Crassostrea gigas},
	journal = {General and Comparative Endocrinology},
	volume = {266},
	year = {2018},
	pages = {110-118},
	type = {regular},
	abstract = {<p class="rtejustify">Although tachykinin-like neuropeptides have been identified in molluscs more than two decades ago, knowledge on their function and signalling has so far remained largely elusive. We developed a cell-based assay to address the functionality of the tachykinin G-protein coupled receptor (Cragi-TKR) in the oyster Crassostrea gigas. The oyster tachykinin neuropeptides that are derived from the tachykinin precursor gene Cragi-TK activate the Cragi-TKR in nanomolar concentrations. Receptor activation is sensitive to Ala-substitution of critical Cragi-TK amino acid residues. The Cragi-TKR gene is expressed in a variety of tissues, albeit at higher levels in the visceral ganglia (VG) of the nervous system. Fluctuations of Cragi-TKR expression is in line with a role for TK signalling in C. gigas reproduction. The expression level of the Cragi-TK gene in the VG depends on the nutritional status of the oyster, suggesting a role for TK signalling in the complex regulation of feeding in C. gigas.</p>
},
	doi = {https://doi.org/10.1016/j.ygcen.2018.05.003},
	author = {Marie-Pierre Dubos and Sven Zels and Julie Schwartz and Jeremy Pasquier and Liliane Schoofs and Pascal Favrel}
}
@article {8568,
	title = {Combined use of two supervised learning algorithms to model sea turtle behaviours from tri-axial acceleration data},
	journal = {Journal of Experimental Biology},
	year = {2018},
	month = {Jan-01-2018},
	issn = {0022-0949},
	doi = {10.1242/jeb.177378},
	url = {https://journals.biologists.com/jeb/article/doi/10.1242/jeb.177378/262989/Combined-use-of-two-supervised-learning-algorithms},
	author = {Jeantet, L. and Dell{\textquoteright}Amico, F. and Forin-Wiart, M. A. and Coutant, M. and Bonola, M. and Etienne, D. and Gresser, J. and Regis, S. and Lecerf, N. and Lefebvre, F. and de Thoisy, B. and Le Maho, Y. and Brucker, M. and Ch{\^a}telain, N. and Laesser, R. and Crenner, F. and Handrich, Y. and Wilson, R. and Chevallier, D.}
}
@article {8557,
	title = {Connecting paths between juvenile and adult habitats in the Atlantic green turtle using genetics and satellite tracking},
	journal = {Ecology and Evolution},
	volume = {8},
	year = {2018},
	month = {Jan-12-2018},
	pages = {12790 - 12802},
	issn = {2045-7758},
	doi = {10.1002/ece3.2018.8.issue-2410.1002/ece3.4708},
	url = {https://onlinelibrary.wiley.com/toc/20457758/8/24},
	author = {Chambault, Philippine and de Thoisy, Beno{\^\i}t and Huguin, Ma{\"\i}lis and Martin, Jordan and Bonola, Marc and Etienne, Denis and Gresser, Julie and Hielard, Ga{\"e}lle and Mailles, Julien and Vedie, Fabien and Barnerias, Cyrille and Sutter, Emmanuel and Guillemot, Blandine and Dumont-Dayot, {\'E}milie and R{\'e}gis, Sidney and Lecerf, Nicolas and Lefebvre, Fabien and Frouin, C{\'e}dric and Aubert, Nathalie and Guimera, Christelle and Bordes, Robinson and Thieulle, Laurent and Duru, Matthieu and Bouaziz, Myriam and Pinson, Adrien and Flora, Fr{\'e}d{\'e}ric and Queneherve, Patrick and Woignier, Thierry and Allenou, Jean-Pierre and Cimiterra, Nicolas and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Maillet, Thomas and Rangon, Luc and Chanteux, No{\'e}mie and Chanteur, B{\'e}n{\'e}dicte and B{\'e}ranger, Christelle and Le Maho, Yvon and Petit, Odile and Chevallier, Damien}
}
@article {5779,
	title = {Copper induces expression and methylation changes of early development genes in Crassostrea gigas embryos},
	journal = {Aquat Toxicol},
	volume = {196},
	year = {2018},
	pages = {70-78},
	keywords = {Oyster Embryotoxicity Copper Gene expression DNA methylation},
	doi = {doi: 10.1016/j.aquatox.2018.01.001},
	url = {https://www.sciencedirect.com/science/article/pii/S0166445X18300018?via\%3Dihub},
	author = {Sussarellu, Rossana and Lebreton Morgane and Rouxel Julien and Akcha Farida and Guillaume Rivi{\`e}re}
}
@inbook {5497,
	title = {De la nuisibilit{\'e} {\`a} la patrimonialit{\'e} en milieu marin. L{\textquoteright}histoire d{\textquoteright}une ambigu{\"\i}t{\'e} entretenue},
	booktitle = {Sales b{\^e}tes, mauvaises herbes},
	volume = {1},
	year = {2018},
	publisher = {Presses Universitaires de Rennes},
	organization = {Presses Universitaires de Rennes},
	address = {Rennes},
	author = {Patrick, Le Mao and Nicolas Desroy and J{\'e}r{\^o}me Fournier and Laurent Godet and Eric Thi{\'e}baut}
}
@article {5499,
	title = {Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets},
	journal = {BMC Genomics},
	volume = {19},
	year = {2018},
	abstract = {<p class="rtejustify">Aquaculture production is expected to double by 2030, and demands for aquafeeds and raw materials are expected to increase accordingly. Sustainable growth of aquaculture will require the development of highly nutritive and functional raw materials to efficiently replace fish meal. Enzymatic hydrolysis of marine and aquaculture raw materials could bring new functionalities to finished products. The aim of this study was to determine the zootechnical and transcriptomic performances of protein hydrolysates of different origins (tilapia, shrimp, and a combination of the two) in European seabass (Dicentrarchux labrax) fed a low fish meal diet (5\%), for 65\&nbsp;days.</p>

<p><strong>Results</strong></p>

<p class="rtejustify">Results were compared to a positive control fed with 20\% of fish meal. Growth performances, anterior intestine histological organization and transcriptomic responses were monitored and analyzed. Dietary inclusion of protein hydrolysates in the low fish meal diet restored similar growth performances to those of the positive control. Inclusion of dietary shrimp hydrolysate resulted in larger villi and more goblet cells, even better than the positive control. Transcriptomic analysis of the anterior intestine showed that dietary hydrolysate inclusion restored a pattern of intestinal gene expression very close to the pattern of the positive control. However, as compared to the low fish meal diet and depending on their origin, the different hydrolysates did not modulate metabolic pathways in the same way. Dietary shrimp hydrolysate inclusion modulated more metabolic pathways related to immunity, while nutritional metabolism was more impacted by dietary tilapia hydrolysate. Interestingly, the combination of the two hydrolysates enhanced the benefits of hydrolysate inclusion in diets: more genes and metabolic pathways were regulated by the combined hydrolysates than by each hydrolysate tested independently.</p>

<p><strong>Conclusions</strong></p>

<p class="rtejustify">Protein hydrolysates manufactured from aquaculture by-products are promising candidates to help replace fish meal in aquaculture feeds without disrupting animal metabolism and performances.</p>
},
	keywords = {Aquaculture, Aquafeed, By-products, European seabass, Fishmeal replacement, Hydrolysate, Illumina RNA-sequencing, Intestinal organization, Metabolic pathways},
	doi = {doi.org/10.1186/s12864-018-4780-0},
	author = {Leduc, Alexandre and C{\'e}line Zatylny-Gaudin and Robert, Marie and Corre, Erwan and Le Corguill{\'e}, Gildas and Castel, H{\'e}l{\`e}ne and Lefevre-Scelles, Antoine and Fournier, Vincent and Gisbert, Enric and Andree, Karl B. and Jo{\"e}l Henry}
}
@article {5363,
	title = {Differences in home-range sizes of a bird species in its original, refuge and substitution habitats: challenges to conservation in anthropogenic habitats},
	journal = {Biodiversity and Conservation},
	volume = {27},
	year = {2018},
	pages = {719-732},
	abstract = {<p>In the current context of the anthropocene, the original habitats of many species have been modified or destroyed. Animals may be forced to move from their original habitats, either to refuge habitats that are suboptimal natural habitats, or to substitution habitats that are anthropogenic. The quality of refuge habitats may be lower than that of the original ones, whereas substitution habitats may be of a similar or even better quality. Here, we test this hypothesis empirically, using the example of coastal populations of the bluethroat, Luscinina svecica namnetum. In a radio-tracking survey, we compared the home-range sizes (considered here a proxy of habitat quality) of the breeding males in their original (coastal saltmarshes), refuge (inland reedbeds) and substitution (coastal salinas) habitats. We found that home ranges are up to 15 times larger in the substitution habitat than in the original one, and intermediate in the refuge habitat, suggesting that substitution habitats have the lowest quality and original habitats the highest. To date, most studies and<br />
conservation programs related to this species have focused on its substitution habitats. This result challenges the interest of focusing on anthropogenic habitats when studying and conserving such a species, because such habitats may only be low-quality substitutes.</p>
},
	doi = {doi.org/10.1007/s10531-017-1460-3},
	author = {Laurent Godet and Cl{\'e}ment Harmange and Matthieu Marquet and Emmanuel Joyeux and J{\'e}r{\^o}me Fournier}
}
@article {5551,
	title = {Distribution, associated species and extent of biofouling {\textquotedblleft}reefs{\textquotedblright} formed by the alien species Ficopomatus enigmaticus (Annelida, Polychaeta) in marinas},
	journal = {Estuarine, Coastal and Shelf Science},
	year = {2018},
	abstract = {<p class="rtejustify">Artificial structures in ports are commonly colonized by non-indigenous epifauna that tolerate high pollution levels. Bioconstructions built by alien species may offer sheltered microhabitats for motile (vagile) animals but biofouling often becomes detrimental to human activities. In this context, the present study provides an inventory of 1) the extent of biofouling related to the alien Polychaeta Ficopomatus enigmaticus on hard structures of marinas in Normandy, France, and 2) the biodiversity of sessile (attached) or vagile (motile) fauna associated with these {\textquotedblleft}reefs{\textquotedblright}, including both native and alien species. Reefs built by F. enigmaticus were found in 6 out of 12 marinas with oligohaline-mesohaline waters. Significant differences in the total volume of biofouling were found among sites, with maximum values observed in Honfleur{\textquoteright}s old basin (459.52 mL per 0.04 m2). Ficopomatus enigmaticus greatly dominated the sessile invertebrate community both in volume (74{\textendash}100\%) and weight (70{\textendash}100\%) in 5 out of 6 marinas. The fouling formed by 5 alien species was colonized by 15 motile invertebrate taxa, including 3 cryptogenic or alien species. The alien crab Rhithropanopeus harrisi displayed the highest frequency of occurrence (\&gt;80\%) and mean density (\&gt;300 ind m-2), and the global densities of sessile (except F. enigmaticus) and motile fauna were significantly correlated (r = 0.824; p \&lt; 0.05). While motile fauna density was also significantly correlated with the biovolume of B. improvisus and M. leucophaeata, it was not with F. enigmaticus (r = 0.421; p \&gt; 0.05). In line with previous studies, these results suggest that F. enigmaticus acts as an engineer offering shelter for reef-associated organisms. In addition, results suggest that at the regional scale, inter-site differences in motile fauna may reflect differences in environmental parameters such as salinity. The presence of F. enigmaticus at low salinity levels led to assess its potential distribution at the scale of the European coasts, suggesting that in the context of climate change, favorable conditions for spawning (\&gt;18 {\textdegree}C) will likely expand towards the North, and particularly in the eastern and northern Baltic Sea.</p>
},
	keywords = {Alien species, Benthic communities, Biofouling, Ficopomatus enigmaticus, Marinas, Normandy},
	doi = {https://doi.org/10.1016/j.ecss.2018.07.007},
	author = {Maud Charles and Robin Faillettaz and Nicolas Desroy and J{\'e}r{\^o}me Fournier and Katherine Costil}
}
@article {5586,
	title = {Dynamics of exopolymeric carbon pools in relation with phytoplankton succession along the salinity gradient of a temperate estuary (France)},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {209},
	year = {2018},
	pages = {18-29},
	abstract = {<p>In parallel to phytoplankton community dynamics, transparent exopolymeric particles (TEP) and exopolymeric<br />
substances (EPS) were investigated along the salinity gradient of a temperate estuary (Seine estuary, Normandy,<br />
France) over the course of a year. The phytoplankton community was mainly dominated by marine diatom<br />
species (especially Skeletonema sp., Nitzschia sp., and Paralia sulcata) associated with a spring bloom of picoeukaryotes<br />
and the development of Cryptophyceae in summer. The decreases in species richness and salinity were<br />
correlated along the estuary and a significant exponential relationship between species richness and primary<br />
production was identified. Concentrations of TEP and EPS (soluble and bound carbohydrates) are highly dynamic<br />
in this estuary and can reach respectively 69 mgC L-1, and 33 mgC L-1. TEP distribution was mainly<br />
related to physical factors (hydrodynamics, maximum turbidity zone formation and sediment resuspension)<br />
probably produced by stressed or dying phytoplankton, while EPS appeared to be excreted during the phytoplankton<br />
spring bloom. Soluble and bound EPS appear to be related to Skeletonema sp. and Cryptophyceae occurrences.<br />
This paper presents the dynamic pattern of these carbon pools, which play an important role in the<br />
trophic network and influence the flocculation processes involved in the fate of both organic and inorganic<br />
matter.</p>
},
	keywords = {Exopolymeric substances Species, Nanophytoplankton, Picophytoplankton, richness},
	author = {Morelle, J{\'e}r{\^o}me and Mathilde Schapira and Fran{\c c}oise, Sylvaine and Courtay Ga{\"e}lle and Francis Orvain and Pascal Claquin}
}
@article {6744,
	title = {Dynamics of particulate organic matter composition in coastal systems: Forcing of spatio-temporal variability at multi-systems scale},
	journal = {Progress in Oceanography},
	volume = {162},
	year = {2018},
	month = {Jan-03-2018},
	pages = {271 - 289},
	issn = {00796611},
	doi = {10.1016/j.pocean.2018.02.026},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0079661117302100},
	author = {Li{\'e}nart, Camilla and Savoye, Nicolas and David, Val{\'e}rie and Ramond, Pierre and Rodriguez Tress, Paco and Hanquiez, Vincent and Marieu, Vincent and Aubert, Fabien and Aubin, S{\'e}bastien and Bichon, Sabrina and Boinet, Christophe and Bourasseau, Line and Bozec, Yann and Br{\'e}ret, Martine and Elsa Breton and Caparros, Jocelyne and Cariou, Thierry and Claquin, Pascal and Conan, Pascal and Corre, Anne-Marie and Costes, Laurence and Muriel Crouvoisier and Del Amo, Yolanda and Derriennic, Herv{\'e} and Dindinaud, Fran{\c c}ois and Duran, Robert and Durozier, Ma{\"\i}a and Devesa, J{\'e}r{\'e}my and Ferreira, Sophie and Eric Feunteun and Garcia, Nicole and Geslin, Sandrine and Emilie Grossteffan and Gueux, Aurore and Guillaudeau, Julien and Guillou, Ga{\"e}l and Jolly, Orianne and Lachauss{\'e}e, Nicolas and Lafont, Michel and Lagadec, V{\'e}ronique and Lamoureux, J{\'e}zabel and Lauga, B{\'e}atrice and Lebreton, Beno{\^\i}t and Lecuyer, Eric and Lehodey, Jean-Paul and Leroux, C{\'e}dric and St{\'e}phane L{\textquoteright}Helguen and Mac{\'e}, Eric and Maria, Eric and Mousseau, Laure and Antoine Nowaczyk and Pineau, Philippe and Petit, Franck and Pujo-Pay, Mireille and Raimbault, Patrick and Rimmelin-Maury, Peggy and Rouaud, Vanessa and Sauriau, Pierre-Guy and Sultan, Emmanuelle and Susperregui, Nicolas}
}
@article {5421,
	title = {Eel Kisspeptins: identification, functional activity, and inhibition on both pituitary LH and GnRH receptor expression},
	journal = {Frontiers in Endocrinology},
	volume = {8},
	year = {2018},
	pages = {353},
	abstract = {<p class="rtejustify">The European eel (<em>Anguilla anguilla</em>) presents a blockade of sexual maturation at a prepubertal stage due to a deficient production of gonadotropins. We previously initiated, in the eel, the investigation of the kisspeptin system, one of the major gatekeepers of puberty in mammals, and we predicted the sequence of two Kiss genes. In the present study, we cloned and sequenced Kiss1 and Kiss2 cDNAs from the eel brain. The tissue distributions of Kiss1 and Kiss2 transcripts, as investigated by quantitative real-time PCR, showed that both genes are primarily expressed in the eel brain and pituitary. The two 10-residue long sequences characteristic of kisspeptin, eel Kp1(10) and Kp2(10), as well as two longer sequences, predicted as mature peptides, eel Kp1(15) and Kp2(12), were synthesized and functionally analyzed. Using rat Kiss1 receptor-transfected Chinese hamster ovary cells, we found that the four synthesized eel peptides were able to induce [Ca2+]i responses, indicating their ability to bind mammalian KissR-1 and to activate second messenger pathways. In primary culture of eel pituitary cells, all four peptides were able to specifically and dose-dependently inhibit lhβ expression, without any effect on fshβ, confirming our previous data with heterologous kisspeptins. Furthermore, in this eel in vitro system, all four peptides inhibited the expression of the type 2 GnRH receptor (gnrh-r2). Our data revealed a dual inhibitory effect of homologous kisspeptins on both pituitary lhβ and gnrh-r2 expression in the European eel.</p>
},
	doi = {10.3389/fendo.2017.00353},
	author = {Pasquier, J and Anne-Gaelle Lafont and Florian, D and Lefranc, B and Dubessy, C and Moreno-Herrera, A and Vaudry, H and Leprince, J and Sylvie Dufour and Karine Rousseau}
}
@article {7108,
	title = {The effect of dietary DHA and taurine on rotifer capture success, growth, survival and vision in the larvae of Atlantic bluefin tuna ( Thunnus thynnus )},
	journal = {Aquaculture},
	volume = {482},
	year = {2018},
	month = {Jan-01-2018},
	pages = {137 - 145},
	issn = {00448486},
	doi = {10.1016/j.aquaculture.2017.09.039},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0044848617303976},
	author = {Koven, W. and Nixon, O. and Allon, G. and Gaon, A. and El Sadin, S. and Jack Falcon and Besseau, L. and Escande, M. and Vassallo Agius, R. and Gordin, H. and Tandler, A.}
}
@article {5707,
	title = {Emergence of a cholecystokinin/sulfakinin signalling system in Lophotrochozoa},
	journal = {Scientific Reports},
	volume = {8},
	year = {2018},
	month = {11/2018},
	pages = {16424},
	abstract = {Chordate gastrin/cholecystokinin (G/CCK) and ecdysozoan sulfakinin (SK) signalling systems represent divergent evolutionary scenarios of a common ancestral signalling system. The present article investigates for the first time the evolution of the CCK/SK signalling system in a member of the Lophotrochozoa, the second clade of protostome animals. We identified two G protein-coupled receptors (GPCR) in the oyster\&nbsp;Crassostrea gigas\&nbsp;(Mollusca), phylogenetically related to chordate CCK receptors (CCKR) and to ecdysozoan sulfakinin receptors (SKR). These receptors, Cragi-CCKR1 and Cragi-CCKR2, were characterised functionally using a cell-based assay. We identified di- and mono-sulphated forms of oyster Cragi-CCK1 (pEGAWDY(SO3H)DY(SO3H)GLGGGRF-NH2) as the potent endogenous agonists for these receptors. The Cragi-CCK genes were expressed in the visceral ganglia of the nervous system. The Cragi-CCKR1 gene was expressed in a variety of tissues, while Cragi-CCKR2 gene expression was more restricted to nervous tissues. An\&nbsp;in vitro\&nbsp;bioassay revealed that different forms of Cragi-CCK1 decreased the frequency of the spontaneous contractions of oyster hindgut. Expression analyses in oysters with contrasted nutritional statuses or in the course of their reproductive cycle highlighted the plausible role of Cragi-CCK signalling in the regulation of feeding and its possible involvement in the coordination of nutrition and energy storage in the gonad. This study confirms the early origin of the CCK/SK signalling system from the common bilaterian ancestor and delivers new insights into its structural and functional evolution in the lophotrochozoan lineage.},
	doi = {doi.org/10.1038/s41598-018-34700-4},
	url = {https://www.nature.com/articles/s41598-018-34700-4},
	author = {Julie Schwartz and Marie-Pierre Dubos and Jeremy Pasquier and C{\'e}line Zatylny-Gaudin and Pascal Favrel}
}
@article {8709,
	title = {First demographic insights on historically harvested and poorly known male sperm whale populations off the Crozet and Kerguelen Islands (Southern Ocean)},
	journal = {Marine Mammal Science},
	volume = {34},
	year = {2018},
	month = {Jan-07-2018},
	pages = {595 - 615},
	doi = {10.1111/mms.12469},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/mms.12469},
	author = {Labadie, Guillemette and Tixier, Paul and Barbraud, Christophe and Fay, R{\'e}mi and Nicolas Gasco and Guy Duhamel and Guinet, Christophe}
}
@article {8569,
	title = {First evaluation of the cookie-cutter sharks (Isistius sp.) predation pattern on different cetacean species in Martinique},
	journal = {Environmental Biology of Fishes},
	volume = {101},
	year = {2018},
	month = {Jan-05-2018},
	pages = {749 - 759},
	issn = {0378-1909},
	doi = {10.1007/s10641-018-0735-1},
	url = {http://link.springer.com/10.1007/s10641-018-0735-1},
	author = {Feunteun, A. and de Schrevel, C. and Verhaegen, M. and Chevallier, D. and Duchemin, M. and Ziani, N. and de Montgolfier, B.}
}
@article {5960,
	title = {Fish fauna survey on the Upper Maroni (French Guyana) between 2000 and 2002 with some ecological considerations},
	journal = {Cybium},
	volume = {42},
	year = {2018},
	pages = {113-126},
	doi = {10.26028/cybium/2018-421-012},
	url = {http://sfi-cybium.fr/fr/fish-fauna-survey-upper-maroni-french-guyana-between-2000-and-2002-some-ecological-considerations},
	author = {Fermon, Y and Fossati, O and Meunier, Francois J.}
}
@article {5343,
	title = {Genetic and morphological discrimination of three species of ninespined stickleback Pungitius spp. (Teleostei, Gasterosteidae) in France with the revalidation of Pungitius vulgaris (Mauduyt, 1848)},
	journal = {J Zool Syst Evol Res },
	volume = {2017},
	year = {2018},
	pages = {1{\textendash}25},
	abstract = {<p class="rtejustify">The taxonomy of French ninespined sticklebacks (<em>Pungitius spp.</em>) has long been controversial. To clarify the taxonomy in this group, we use mitochondrial (COI) and nuclear\&nbsp; (RNF213) sequence markers, as well as morphological data. In France, both genetic markers discriminate three evolutionary lineages. Morphological analysis on fresh and type specimens supports the different lineages and the existence of three species in France. <em>Pungitius pungitius</em>, occurring in the North of France and Rhone basin, is characterized by specimens longer than 35 mm SL, by a flat head with a straight or slightly concave snout, typically 9{\textendash}10 dorsal spines, 10{\textendash}11 dorsal soft rays, 9{\textendash}10 anal soft rays, 0{\textendash}12 scutes on the caudal peduncle with a keel reaching the last anal-fin ray, longer pelvic fin, post-dorsal and caudal peduncle lengths, and a slim caudal peduncle (caudal peduncle depth/ length 11.8\%{\textendash}21.9\%).<em> Pungitius laevis</em>, occurring in France, in the English Channel basins and Loire drainage, differs from the other species by a head rounded with concave snout in specimens longer than 35 mm SL, accentuating the impression of fleshy lips, 0{\textendash}4 scutes on the caudal peduncle and a higher caudal peduncle depth/length ratio (15.7\%{\textendash} 34.5\%). Finally, <em>Pungitius vulgaris</em>, endemic to the Vienne River and rivers of south-western France as far north as the Garonne estuary, is differentiated by a rounded head with a straight or slightly convex snout, the absence of scutes on the caudal peduncle and by having 11 pectoral-fin rays. Our data confirm the existence of a hybridization zone in the North of France between <em>P. pungitius</em> and <em>P. laevis</em>. As a result, <em>Pungitius lotharingus</em> is invalid, as it was described based on hybrid specimens. A lectotype for <em>P. laevis</em> was designated because the syntypes included hybrids. This revision provides new perspectives for evolutionary biology studies and will have consequences for Pungitius conservation in France.</p>
},
	keywords = {France, Integrative taxonomy, mitochondrial DNA COI, Pungitius, RNF213},
	author = {Denys, Ga{\"e}l and Persat, Henri and Dettai, Agn{\`e}s and Geiger Mathias and Freyhof, J and Fesquet,  J and Philippe Keith}
}
@article {6817,
	title = {Gill chamber and gut microbial communities of the hydrothermal shrimp Rimicaris chacei Williams and Rona 1986: A possible symbiosis},
	journal = {PLOS ONE},
	volume = {13},
	year = {2018},
	month = {Feb-11-2018},
	pages = {e0206084},
	abstract = {<div class="rtejustify"><em>Rimicaris chacei </em>Williams and Rona 1986, formerly named as <em>Chorocaris chacei</em>, is a caridean<br />
shrimp living in deep-sea hydrothermal ecosystems. This shrimp is endemic to the Mid<br />
Atlantic Ridge (MAR) and lives at the periphery of aggregates of its well-known congeneric<br />
<em>R. exoculata</em> Williams and Rona 1986. Contrasting with the very dense and mobile clusters</div>

<div class="rtejustify">formed by <em>R. exoculata</em>, <em>R. chacei</em> lives in small groups of several individuals that are not</div>

<div class="rtejustify">very mobile. Although devoid of the characteristic hypertrophied cephalothorax of <em>R. exoculata</em>,<br />
which harbors the ectosymbionts, a microbial community has also been reported in the<br />
cephalothorax of <em>R. chacei</em>. Previous data on morphology, behavior and isotopic values indicate<br />
a diet based on a combination of feeding on its epibiotic bacteria and scavenging or<br />
occasional predation. In this study, our objective was to describe, for the first time, the distribution,<br />
morphology and phylogeny of the microbial communities associated with <em>R. chacei</em>.<br />
This species is significantly less studied than <em>R. exoculata</em>, but nevertheless represents the<br />
only other known example of symbiosis in crustaceans of MAR hydrothermal vent sites.<br />
Microbial communities have been observed at the same locations as in <em>R. exoculata</em><br />
(mouthparts, branchiostegites and digestive tract). However, in <em>R. chacei</em>, the surfaces<br />
occupied by the bacteria are smaller. The main lineages are affiliated to Epsilon and Gammaproteobacteria<br />
in the cephalothorax and to Deferribacteres, Mollicutes, Epsilon and<br />
Gammaproteobacteria in the digestive tract. Comparison with the well-described bacterial<br />
communities of <em>R. exoculata</em> and hypotheses about the role of these communities in <em>R. chacei</em><br />
are discussed.</div>
},
	doi = {10.1371/journal.pone.0206084},
	url = {http://dx.plos.org/10.1371/journal.pone.0206084},
	author = {Apremont, Vincent and Cambon-Bonavita, Marie-Anne and Cueff-Gauchard, Val{\'e}rie and Fran{\c c}ois, David and Pradillon, Florence and Laure Corbari and Magali Zbinden},
	editor = {Kuo, Chih-Horng}
}
@article {5959,
	title = {Histology of the endothermic opah (Lampris sp.) suggests a new structure function relationship in teleost fish bone},
	journal = {Biology Letters},
	volume = {14},
	year = {2018},
	pages = {20180270},
	abstract = {<p>Endothermy, production and retention of heat by the body, appeared convergently in mammals, birds and four spiny-rayed teleost fish lineages. Of these, red-muscle endothermy over most or all of the body has only appeared in two groups: tunas and the opah (Lampris). Hitherto, tunas have been the only spiny-rayed fishes known to have bones containing embedded osteocyte cells; others have acellular bone. We examined bone histology in Lampris for the first time, demonstrating the presence of cellular bone very similar to that of tunas. This contrasts with the acellular condition of its ectothermic close relatives. The distribution of this character suggests that it co-evolved with red-muscle endothermy, hinting at a common physiological mechanism that would link bone histology to endothermy in these distantly related teleost lineages.</p>
},
	doi = {10.1098/rsbl.2018.0270} URL = {https://royalsocietypublishing.org/doi/abs/10.1098/rsbl.2018.0270},
	author = {Davesne, Donald and Meunier, Francois J. and Friedman, Matt and Benson, Roger B. J. and Otero, Olga}
}
@article {5176,
	title = {Interplay between abiotic factors and species assemblages mediated by the ecosystem engineer Sabellaria alveolata (Annelida: Polychaeta)},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {200},
	year = {2018},
	abstract = {<p class="rtejustify"><em>Sabellaria alveolata </em>is a gregarious polychaete that uses sand particles to build three-dimensional structures known as reefs, fixed atop rocks or built on soft sediments. These structures are known to modify the local grain-size distribution and to host a highly diversified macrofauna, altered when the reef undergoes disturbances.<br />
The goal of this study was to investigate the different sedimentary and biological changes associated with the presence of a <em>S. alveolata </em>reef over two contrasting seasons (late winter and late summer), and how these changes were linked. Three different sediments were considered: the engineered sediment (the actual reef), the associated sediment (the soft sediment surrounding the reef structures) and a control soft sediment (i.e. no reef structures in close proximity). Univariate and multivariate comparisons of grain-size distribution, soft sediment characteristics (organic matter content, chlorophyll a, pheopigments and carbohydrate concentrations) and macrofauna were conducted between the different sediment types at both seasons and between the two seasons for each sediment type. A distance-based redundancy analyses (dbRDA) was used to investigate the link between the different environmental parameters and the macrofauna assemblages. Finally, we focused on a disturbance continuum of the engineered sediments proxied by an increase in the mud present in these sediments. The effects of a continuous and increasing disturbance on the associated fauna were investigated using pairwise beta diversity indices (S{\o}rensen and Bray-Curtis dissimilarities and their decomposition into turnover and nestedness). Results showed a significant effect of the reef on the local sediment distribution (coarser sediments compared to the control) and on the benthic primary production (higher in the associated sediments). At both seasons, <em>S. alveolata</em> biomass and sediment principal mode were the environmental parameters which best differentiated the engineered, associated and control sediment assemblages. These two parameters are under the ecosystem engineer{\textquoteright}s influence stressing its importance in structuring benthic macrofauna. Furthermore, in late summer but not in late winter, presence/absence and abundance based beta diversity were positively correlated to our disturbance proxy (mud content) a tendency driven by a species replacement and a rise in the associated fauna density.<br />
Our first set of results highlight the importance of <em>S. alveolata</em> reefs as benthic primary production enhancers via their physical structure and their biological activity. The results obtained using beta diversity indices emphasize the importance of recruitment in structuring the reef{\textquoteright}s macrofauna and {\textendash} paradoxically {\textendash} the ecological value of <em>S. alveolata </em>degraded forms as biodiversity and recruitment promoters.</p>
},
	doi = {doi.org/10.1016/j.ecss.2017.10.001},
	url = {https://doi.org/10.1016/j.ecss.2017.10.001},
	author = {Auriane Jones and Stanislas Dubois and Nicolas Desroy and J{\'e}r{\^o}me Fournier}
}
@article {5364,
	title = {Latitudinal Patterns in European Seagrass Carbon Reserves: Influence of Seasonal Fluctuations versus Short-Term Stress and Disturbance Events},
	journal = {Frontiers in Plant Science},
	volume = {9},
	year = {2018},
	abstract = {<p>Seagrass meadows form highly productive and valuable ecosystems in the marine environment. Throughout the year, seagrass meadows are exposed to abiotic and biotic variations linked to (i) seasonal fluctuations, (ii) short-term stress events such as, e.g., local nutrient enrichment, and (iii) small-scale disturbances such as, e.g., biomass removal by grazing. We hypothesized that short-term stress events and smallscale disturbances may affect seagrass chance for survival in temperate latitudes. To test this hypothesis we focused on seagrass carbon reserves in the form of starch stored seasonally in rhizomes, as these have been defined as a good indicator for winter survival. Twelve Zostera noltei meadows were monitored along a latitudinal<br />
gradient in Western Europe to firstly assess the seasonal change of their rhizomal starch content. Secondly, we tested the effects of nutrient enrichment and/or biomass removal on the corresponding starch content by using a short-term manipulative field experiment at a single latitude in the Netherlands. At the end of the growing season, we observed a weak but significant linear increase of starch content along the latitudinal gradient from south to north. This agrees with the contention that such reserves are essential for regrowth after winter, which is more severe in the north. In addition, we also observed a weak but significant positive relationship between starch content at the beginning of the growing season and past winter temperatures. This implies a lower regrowth potential after severe winters, due to diminished starch content at the beginning of the growing season. Short-term stress and disturbances<br />
may intensify these patterns, because our manipulative experiments show that when nutrient enrichment and biomass loss co-occurred at the end of the growing season, Z. noltei starch content declined. In temperate zones, the capacity of seagrasses to accumulate carbon reserves is expected to determine carbon-based regrowth after winter. Therefore, processes affecting those reserves might affect seagrass resilience. With increasing human pressure on coastal systems, short- and small-scale stress events are expected to become more frequent, threatening the resilience of seagrass ecosystems, particularly at higher latitudes, where populations tend to have an annual cycle highly dependent on their storage capacity.</p>
},
	doi = {doi: 10.3389/fpls.2018.00088},
	author = {L.M. Soissons and E.P. Haanstra and M.M. van Katwijk and R. Asmus and I. Auby and L. Barill{\'e} and F.G. Brun and P.G. Cardoso and Nicolas Desroy and J{\'e}r{\^o}me Fournier and F. Ganthy and J.M. Garmendia and Laurent Godet and T.F. Grilo and P. Kadel and B. Ondiviela and G. Peralta and A. Puente and M. Recio and L. Rigouin and M. Valle and P.M.J. Herman and T.J. Bouma}
}
@article {5611,
	title = {Marine sublittoral benthos fails to track temperature in response to climate change in a biogeographical transition zone},
	journal = {ICES Journal of Marine Science},
	year = {2018},
	abstract = {<p>Species ranges are shifting globally to track temperature changes in response to climate warming, with substantial variability among taxa. In<br />
the English Channel, a biogeographical transition zone between the cold temperate and warm temperate provinces of the North-East Atlantic, distribution shifts have been relatively well documented for plankton, fish and intertidal benthic organisms, but little information is available on sublittoral benthos. Following a description of the magnitude of the sea bottom temperature (SBT) rise, the changes in the distribution and occupancy of 65 benthic invertebrate species were analysed by comparing data collected throughout the English Channel at more<br />
than 200 stations sampled during a cool period in the 1960s{\textendash}1970s and at present in 2012{\textendash}2014. A non-uniform rise in SBT for the last three<br />
decades was observed at the regional scale, varying from 0.07 to 0.54C per decade. This rise differs from that reported for sea surface temperature<br />
(SST) in stratified areas suggesting that SBT should be used rather than SST to analyse responses of subtidal organisms to climate change. Despite shifts in both minimum and maximum sea bottom isotherms (2.5 and 3.2 km.year1, respectively), the distribution centroid shift of most species remained \&lt;1.0 km.year1, regardless of the average temperatures they usually experience. Conversely, decreases were observed in the occurrence of most cold-water species and increases were found in the occurrence of most warm-water species. These results suggest that ongoing climate change could lead to a decrease in benthic biodiversity at range limits, especially where connection routes are lacking for new migrants.</p>
},
	doi = {doi:10.1093/icesjms/fsy095},
	author = {Fran{\c c}ois Gaudin and Nicolas Desroy and Stanislas Dubois and Caroline Broudin and Louis Cabioch and J{\'e}r{\^o}me Fournier and Franck Gentil and Jacques Grall and C{\'e}line Houbin and Patrick Le Mao and Eric Thi{\'e}baut}
}
@article {6751,
	title = {Migration behaviour and escapement of European silver eels from a large lake and wetland system subject to water level management (Grand-Lieu Lake, France): New insights from regulated acoustic telemetry data},
	journal = {Ecology of Freshwater Fish},
	volume = {27},
	year = {2018},
	pages = {570-579},
	abstract = {Current knowledge about the downstream migration of sexually mature European eels (Anguilla\&nbsp;anguilla) remains incomplete, particularly in still water habitats such as lakes and wetlands subject to water level management. However, for the management of this endangered species, it is important to understand migration dynamics, and contribution to the breeding stock. This study aimed to assess the parameters that trigger and guide the migration of silver eels in the largest floodplain lake and associated wetlands in France (the sluice regulated Grand-Lieu Lake). A telemetry survey of 50 acoustic and PIT-tagged female silver eels was performed during the 2015{\textendash}2016 migration period. We deployed a novel telemetric approach, using receivers to delimit several restricted virtual boxes to determine the instantaneous location of individuals and to transform simple discrete telemetric data into presence/absence data. The low numbers leaving the lake centre are probably explained by the lack of orienting water flows or other environmental clues, but whilst the fate of 34\% (17/50) of the tagged eels is unknown, 18\% (9/50) were caught by commercial fishermen. Modelling showed that detections were not clearly associated with environmental factors typically involved in riverine migrations (e.g. current velocity, atmospheric pressure and temperature) but they were particularly associated with higher and increasing water levels and, for eels exiting the lake, a sharp increase when sluice gates were opened to an effective gap of \&gt;75\&nbsp;cm. It is concluded that management of water levels and sluice gate opening during the migration period might aid escapement of silver eels.},
	keywords = {Anguilla~anguilla, cues, silver eel migration, triggers},
	doi = {10.1111/eff.12371},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12371},
	author = {Thomas Trancart and Eric Feunteun and Danet, Valentin and Alexandre Carpentier and Mazel, Virgile and Charrier, Fabien and Druet, Morgan and Anthony Acou}
}
@article {5431,
	title = {Mission POLARIS : Invert{\'e}br{\'e}s antarctiques et r{\'e}chauffement global},
	volume = {278},
	year = {2018},
	month = {Juin},
	pages = {82-83},
	issn = {0990-0845},
	author = {St{\'e}phane Hourdez and J{\'e}r{\^o}me Fournier and Pierre Chevaldonn{\'e}}
}
@article {5864,
	title = {{OZCAR}: The French Network of Critical Zone Observatories},
	journal = {Vadose Zone Journal},
	volume = {17},
	year = {2018},
	doi = {10.2136/vzj2018.04.0067},
	url = {https://doi.org/10.2136/vzj2018.04.0067},
	author = {J. Gaillardet and I. Braud and F. Hankard and S. Anquetin and O. Bour and N. Dorfliger and J.R. de Dreuzy and S. Galle and C. Galy and S. Gogo and L. Gourcy and F. Habets and F. Laggoun and L. Longuevergne and T. Le Borgne and F. Naaim-Bouvet and G. Nord and V. Simonneaux and D. Six and T. Tallec and C. Valentin and Gwena{\"e}l Abril and P. Allemand and A. Ar{\`e}nes and B. Arfib and L. Arnaud and N. Arnaud and P. Arnaud and S. Audry and V. Bailly Comte and C. Batiot and A. Battais and H. Bellot and E. Bernard and C. Bertrand and H. Bessi{\`e}re and S. Binet and J. Bodin and X. Bodin and L. Boithias and J. Bouchez and B. Boudevillain and I. Bouzou Moussa and F. Branger and J. J. Braun and P. Brunet and B. Caceres and D. Calmels and B. Cappelaere and H. Celle-Jeanton and F. Chabaux and K. Chalikakis and C. Champollion and Y. Copard and C. Cotel and P. Davy and P. Deline and G. Delrieu and J. Demarty and C. Dessert and M. Dumont and C. Emblanch and J. Ezzahar and M. Est{\`e}ves and V. Favier and M. Faucheux and N. Filizola and P. Flammarion and P. Floury and O. Fovet and M. Fournier and A. J. Francez and L. Gandois and C. Gascuel and E. Gayer and C. Genthon and M. F. G{\'e}rard and D. Gilbert and I. Gouttevin and M. Grippa and G. Gruau and A. Jardani and L. Jeanneau and J. L. Join and H. Jourde and F. Karbou and D. Labat and Yvan Lagadeuc and E. Lajeunesse and R. Lastennet and W. Lavado and E. Lawin and T. Lebel and C. Le Bouteiller and C. Legout and Y. Lejeune and E. Le Meur and N. Le Moigne and J. Lions and A. Lucas and J. P. Malet and C. Marais-Sicre and J. C. Mar{\'e}chal and C. Marlin and P. Martin and J. Martins and J. M. Martinez and N. Massei and A. Mauclerc and N. Mazzilli and J. Mol{\'e}nat and P. Moreira-Turcq and E. Mougin and S. Morin and J. Ndam Ngoupayou and G. Panthou and C. Peugeot and G. Picard and M. C. Pierret and G. Porel and A. Probst and J. L. Probst and A. Rabatel and D. Raclot and L. Ravanel and F. Rejiba and P. Ren{\'e} and O. Ribolzi and J. Riotte and A. Rivi{\`e}re and H. Robain and L. Ruiz and J. M. Sanchez-Perez and W. Santini and S. Sauvage and P. Schoeneich and J. L. Seidel and M. Sekhar and O. Sengtaheuanghoung and N. Silvera and M. Steinmann and A. Soruco and G. Tallec and E. Thibert and D. Valdes Lao and C. Vincent and D. Viville and P. Wagnon and R. Zitouna}
}
@article {5620,
	title = {Paraglacial coasts responses to glacier retreat and associated shifts in river floodplains over decadal timescales (1966-2016), Kongsfjorden, Svalbard},
	journal = {Land Degradation and Development},
	year = {2018},
	abstract = {<p>The aim of this paper is to quantify and map the impact of the post-LIA climate change on the coastal evolution on three glacier catchments in the Kongsfjorden area in Svalbard. Climatic data of the meteorological station of Ny-{\r A}lesund indicate an increase in the annual mean air temperature of +4{\textdegree}C from 1969 to 2016 and an increase in precipitation. On the northern coast of the Br{\o}gger Peninsula, the Austre Lov{\'e}nbreen, Midtre Lov{\'e}nbreen and Vestre Lov{\'e}nbreen glaciers have experienced a net retreat in response to changing meteorological conditions. As a consequence of this retreat, the glaciers have disclosed a large area of 7 km{\texttwosuperior} composed of terrigenous sediments which is reworked by runoff and forms coastal sandur deltas. Channel network behavior has been studied using the computation of the active floodplain width by photo-interpretation, which decreased in average from 1966 to 2010. This demonstrated a contraction of the active braided belt and a decrease in the amount of braided channels. A photo-interpretation analysis combined with acquisition of dGPS data during field work shows a mean shoreline progradation of + 0.16 m/y from 1966 to 2016, with a maximal advance of + 82 m seaward. Since 1966 coastal progradation has decreased in time with higher mean values at the beginning of the studied period and an erosional trend from 1990. The sublittoral area was studied using analog side scan sonar in 2009, 2011 and 2012. Three pro-deltas were identified and underwent an extension of 30,000 m{\texttwosuperior} from 2009 to 2012. In the light of this knowledge, our main conclusion is that, by retreating, glaciers have an impact on the sediment availability and on the capacity of the fluvial system to effectively transport sediment to the shoreline. These two factors control the overall coastal evolution by regulating the sediment supply to the coastal area. The coastal zones that were fed with sediments by runoff have experienced a coastal progradation and those that lost this supply have undergone a coastal recession. Due to the contraction of proglacial floodplains, current progradation concerns restricted coastal areas.</p>
},
	doi = {10.1002/ldr.3149},
	author = {Marine Bourriquen and Agn{\`e}s Baltzer and Denis Mercier and J{\'e}r{\^o}me Fournier and St{\'e}phane Costa and Erwan Roussel}
}
@book {5650,
	title = {Peces de consumo de la Amazon{\'\i}a Peruana},
	year = {2018},
	pages = {218},
	edition = {Instituto de Investigaciones de la Amazon{\'\i}a Peruana (IIAP), Iquitos, Per{\'u}},
	author = {Garc{\'\i}a-D{\'a}vila, C and Sanchez, H. and Flores, M and Mejia, J. and Angulo, C. and Castro-Ruiz, D. and Estivals, G. and Garcia, Aurea and Vargas, G. and Nolorbe, C. and Jesus Nu{\~n}ez-Rodriguez and Mariac, C{\'e}dric and Fabrice Duponchelle and Renno, Jean-Francois}
}
@book {7107,
	title = {Photoperiodism in Fish},
	series = {Encyclopedia of Reproduction},
	year = {2018},
	pages = {400 - 408},
	publisher = {Elsevier},
	organization = {Elsevier},
	isbn = {9780128151457},
	doi = {10.1016/B978-0-12-809633-8.20584-0},
	url = {https://linkinghub.elsevier.com/retrieve/pii/B9780128096338205840},
	author = {Jack Falcon and Zohar, Yonathan}
}
@article {5925,
	title = {Phylogeography of Eleotris fusca (Teleostei: Gobioidei: Eleotridae) in the Indo-Pacific area reveals a cryptic species in the Indian Ocean.},
	journal = {Conservation genetics},
	volume = {19},
	year = {2018},
	pages = {1025-1038},
	abstract = {<p>\&nbsp;Indo-Pacific insular freshwater systems are mainly dominated by amphidromous species. <em>Eleotris fusca</em>\&nbsp; is a widespread one, its life cycle is characterised by a marine pelagic larval phase allowing the species to disperse in the ocean and then to recruit to remote island rivers. In the present study, the population structure of <em>E. fusca</em>\&nbsp; over its Indo-Pacific distribution range (Western Indian Ocean to French Polynesia, Pacific Ocean) was evaluated. We analysed a section of mitochondrial COI\&nbsp; of 557 individuals sampled from 28 islands to visualise the population structure. Haplotypes diversity (Hd) was between 0.458 and 1 and, nucleotide diversity (π) was between 0.001 and 0.02. Two distinct genetic groups appeared, one in the Indian Ocean and the other in the Pacific Ocean (FST\&nbsp; mean = 0.901; 5.2\% average divergence). Given these results, complete mitogenomes (mtDNA) were sequenced and combined with the nuclear Rhodopsin (Rh) gene for a subset of individuals. The two phylogenetic trees based on each analysis showed the same genetic pattern: two different groups belonging to the Indian and the Pacific oceans (6.6 and 1.6\% of divergence for mtDNA and Rh gene respectively), which supported species level differentiation. These analyses revealed the presence of two sister species confounded until present under the name of <em>Eleotris fusca</em>. One of them is cryptic and endemic of the Indian Ocean and the other one is the true <em>E. fusca</em>, which keeps, nevertheless, its status of widespread species.</p>
},
	keywords = {Amphidromous, Complete mitogenome, freshwater fish, Nuclear gene},
	author = {Marion Mennesson and Bonillo, C{\'e}line and Eric Feunteun and Philippe Keith}
}
@article {8407,
	title = {Presence of larvae of lampreys, Lampetra sp. (Cephalaspidomorphi, Petromyzontiformes), in a French Catalan basin},
	journal = {Cybium},
	volume = {42},
	year = {2018},
	pages = {216-218},
	abstract = {Des ammoc{\`e}tes de lamproies ont {\'e}t{\'e} r{\'e}cemment captur{\'e}es pour la premi{\`e}re fois dans un cours d{\textquoteright}eau de Catalogne fran{\c c}aise, la T{\^e}t. Les identifications morphologique et mol{\'e}culaire ont d{\'e}montr{\'e} que ces ammoc{\`e}tes appartiennent au complexe [Lampetra fluviatilis / Lampetra planeri]. Les lamproies et leurs fray{\`e}res {\'e}tant prot{\'e}g{\'e}es en France, cette {\'e}tude aura une incidence sur la gestion du cours d{\textquoteright}eau de la T{\^e}t.},
	author = {Arsento, R{\'e}my and Richarte, K{\'e}vin and Fonteneau, Andr{\'e} and Denys, Ga{\"e}l}
}
@article {5629,
	title = {Review of fisheries resource use and status in the Madeira River basin (Brazil, Bolivia and Peru) before the hydroelectric dam{\textquoteright}s completion},
	journal = {Reviews in Fisheries Science \& Aquaculture },
	volume = {26},
	year = {2018},
	pages = {494-514},
	abstract = {<p class="rtejustify">The Madeira River, which drains one of the major tributary river basins of the upper Amazon, contributes to small-scale fisheries in Peru, Bolivia, and Brazil. This paper provides a base-line of fisheries resources and their status in six sub-basins of the Madeira River: upper Madre de Dios River basin (Peru), Beni and Mamor{\'e} River basins (Bolivia), It{\'e}nez or Guapor{\'e} River basin (Bolivia and Brazil), middle Madeira, and (two sections of the) lower Madeira River (Brazil). Data were collected between 2009 and 2011, before the completion of two hydroelectric dams in the Brazilian portion of the basin. Biophysical, social, and biological indicators were used to characterize the fisheries. The results show an overall small-scale multispecies fisheries pattern but with notorious differences between the Madeira sub-basins. The Beni and Mamor{\'e} sub-basin shows the largest flooded area, with associated higher total fisheries yields. Trophic level of the catch, diversity, and mean weight of fish caught were shown to be very sensitive to exploitation level, river water type (white or clear water), flooded area, and the introduction of\&nbsp;<em>Arapaima gigas</em> in Bolivia. The Bolivian fisheries are characterized by less exploited stocks, whereas stocks in Peru and Brazil show signs of intensive exploitation, resulting in fisheries of smaller bodied, lower trophic-level species. Landing data in the upper basin show a predominant reliance on migrating fish resources, which might be vulnerable to the construction of dams. These data serve as a baseline to evaluate anthropogenic impacts on the Madeira River basin fisheries in the future.</p>

<p class="rtejustify">KEYWORDS:\&nbsp;Amazon,\&nbsp;freshwater ecosystem,\&nbsp;trophic level,\&nbsp;diversity,\&nbsp;fish catch</p>
},
	doi = {The goliath catfish Brachyplatystoma rousseauxii has crucial economical and ecological functions in the Amazon basin. Although its life history characteristics have been studied in the Amazon, there is little information in the Madeira River basin, which },
	author = {Doria, C R C and Fabrice Duponchelle and Lima, M A L and Garc{\'\i}a V{\'a}squez, A and Carvajal-Vallejos, F and Coca M{\'e}ndez, C and Catarino, M F and Carlos E.C. Freitas and Vega, B and Van Damme, P A}
}
@article {6798,
	title = {Short-term prey field lability constrains individual specialisation in resource selection and foraging site fidelity in a marine predator},
	journal = {Ecology Letters},
	volume = {21},
	year = {2018},
	month = {07-2018},
	pages = {1043 - 1054},
	abstract = {Spatio-temporally stable prey distributions coupled with individual foraging site fidelity are predicted to favour individual resource specialisation. Conversely, predators coping with dynamic prey distributions should diversify their individual diet and/or shift foraging areas to increase net intake. We studied individual specialisation in Scopoli{\textquoteright}s shearwaters (Calonectris diomedea) from the highly dynamic Western Mediterranean, using daily prey distributions together with resource selection, site fidelity and trophic-level analyses. As hypothesised, we found dietary diversification, low foraging site fidelity and almost no individual specialisation in resource selection. Crucially, shearwaters switched daily foraging tactics, selecting areas with contrasting prey of varying trophic levels. Overall, information use and plastic resource selection of individuals with reduced short-term foraging site fidelity allow predators to overcome prey field lability. Our study is an essential step towards a better understanding of individual responses to enhanced environmental stochasticity driven by global changes, and of pathways favouring population persistence.},
	doi = {10.1111/ele.2018.21.issue-710.1111/ele.12970},
	url = {http://onlinelibrary.wiley.com/wol1/doi/10.1111/ele.12970},
	author = {Courbin, Nicolas and Besnard, Aur{\'e}lien and Clara P{\'e}ron and Saraux, Claire and Fort, J{\'e}r{\^o}me and Perret, Samuel and Tornos, J{\'e}r{\'e}my and Gr{\'e}millet, David}
}
@article {6752,
	title = {Silver eel downstream migration in the River Rhine, route choice, and its impacts on escapement: A 6-year telemetry study in a highly anthropized system},
	journal = {Ecological Engineering},
	volume = {123},
	year = {2018},
	pages = {202 - 211},
	abstract = {Several routes are available for the downstream migration of silver eels in the river Rhine system. Very different effects on migration success can result from this choice, such as speed and migration duration or escapement rate. We studied the downstream migration of silver eels in a river section with two different routes. The first route is the initial and old riverbed, with two dams equipped with two rather small or medium sized hydropower plants (HPPs) located at the beginning and at the exit of the bypass stretch. Both HPPs have small bar spacing (10 mm and 20 mm, respectively) and the second HPP has two downstream bypasses. The second route is a power canal, supplying four major HPPs (maximum discharge capacity = 1400 m3 s-1) and a nuclear power plant with cooling water. Firstly, this study focused on highlighting the factors influencing route choice. Secondly, we focused on the consequences of this choice. We demonstrate that water current management in the old riverbed at the study site had a 40\% higher negative effect on eel survival than that by a consecutive passage in four turbines.},
	keywords = {Escapement, Migration, Path selection, Rhine river, Silver-eel, Telemetry},
	issn = {0925-8574},
	doi = {https://doi.org/10.1016/j.ecoleng.2018.09.002},
	url = {http://www.sciencedirect.com/science/article/pii/S0925857418303318},
	author = {Thomas Trancart and St{\'e}phane T{\'e}tard and Anthony Acou and Eric Feunteun and Fr{\'e}d{\'e}ric Schaeffer and Eric de Oliveira}
}
@article {6746,
	title = {Stable isotopes as tracers can reveal resource allocation in juvenile golden gray mullets (Liza aurata, Risso, 1810)},
	journal = {Journal of Experimental Marine Biology and Ecology},
	volume = {503},
	year = {2018},
	month = {Jan-06-2018},
	pages = {72 - 79},
	abstract = {Studies on the nutritional physiology of predator fish in the marine environment have contributed to our understanding of how they adapt to the environment and how they have evolved. Despite the fact that herbivorous and omnivorous fish species are numerous and play a significant role in the ecosystem, there is little information on how they process nutrients and how these are allocated to different tissues. This information could be particularly important for the juvenile stages, when small-sized fish are under high predation pressure and have a limited capability to intake and digest large quantities of food. The mullet Liza aurata ingests surface sediment and obtains its nutritional requirements from the organisms associated with the sediment, including microalgae and bacteria or small invertebrates. This paper examines how the carbon and nitrogen derived from benthic micro-organisms are allocated to the liver and muscle tissues of newborn (young-of-the-year, YOY) and one-year-old (OYO) individuals. After the animals were left feeding on 13C-enriched microalgae and 15N-enriched bacteria for 1 h, we traced the 13C and 15N in the liver and muscle tissues as well as in the blood and the gut. The YOY allocated 99\% of the 13C and 88\% of the 15N to the muscles, while the liver had a negligible amount of tracers (0.4\% and 11\% for 13C and 15N). Conversely, in the OYO experiment, the tracers were uniformly distributed throughout the muscle and liver (57\% of 13C and 45\% of 15N were found in the muscle, whereas 43\% of 13C and 55\% of 15N were in the liver). Negligible amounts were traced in the blood (\&lt;0.1\%), while a part of the tracers was not assimilated and remained in the gut of both YOY and OYO fish. These results indicated a size-related shift in resource allocation during first year of growth of L. aurata, probably related to changes in the survival strategies among juveniles. Our results also indicated that stable isotope enrichment can be a helpful tool for studying resource allocation in fish.},
	issn = {00220981},
	doi = {10.1016/j.jembe.2018.01.009},
	url = {https://www.sciencedirect.com/science/article/pii/S0022098117301971},
	author = {Como, S. and Alexandre Carpentier and Rossi, F. and Christine Dupuy and Richard, P. and Eric Feunteun and Lefran{\c c}ois, C.}
}
@article {5515,
	title = {Strengths, weaknesses, and opportunities of French research in trophic ecology},
	journal = {Comptes Rendus Biologies},
	year = {2018},
	pages = {-},
	abstract = {<p class="rtejustify">The French National Institute of Ecology and Environment (INEE) aims at fostering pluridisciplinarity in Environmental Science and, for that purpose, funds ex muros research groups (GDR) on thematic topics. Trophic ecology has been identified as a scientific field in ecology that would greatly benefit from such networking activity, as being profoundly scattered. This has motivated the seeding of a GDR, entitled {\^a}GRET{\^a}. The contours of the GRET{\textquoteright}s action, and its ability to fill these gaps within trophic ecology at the French national scale, will depend on the causes of this relative scattering. This study relied on a nationally broadcasted poll aiming at characterizing the field of trophic ecology in France. Amongst all the unique individuals that fulfilled the poll, over 300 belonged at least partly to the field of trophic ecology. The sample included all French public research institutes and career stages. Three main disruptions within the community of scientist in trophic ecology were identified. The first highlighted the lack of interfaces between microbial and trophic ecology. The second evidenced that research questions were strongly linked to single study fields or ecosystem type. Last, research activities are still quite restricted to the ecosystem boundaries. All three rupture points limit the conceptual and applied progression in the field of trophic ecology. Here we show that most of the disruptions within French Trophic Ecology are culturally inherited, rather than motivated by scientific reasons or justified by socio-economic stakes. Comparison with the current literature confirms that these disruptions are not necessarily typical of the French research landscape, but instead echo the general weaknesses of the international research in ecology. Thereby, communication and networking actions within and toward the community of trophic ecologists, as planned within the GRET{\textquoteright}s objectives, should contribute to fill these gaps, by reintegrating microbes within trophic concepts and setting the seeds for trans- and meta-ecosystemic research opportunities. Once the community of trophic ecologists is aware of the scientific benefit in pushing its boundaries forwards, turning words and good intentions into concrete research projects will depend on the opportunities to obtain research funding.</p>
},
	keywords = {Community},
	issn = {1631-0691},
	doi = {https://doi.org/10.1016/j.crvi.2018.05.001},
	url = {https://www.sciencedirect.com/science/article/pii/S1631069118300830},
	author = {Marie-Elodie Perga and Michael Danger and Dubois, Stanislas and Cl{\'e}mentine Fritch and C{\'e}dric Gaucherel and C{\'e}dric Hubas and Franck Jabot and Lacroix, G{\'e}rard and S{\'e}bastien Lefebvre and P. Marmonier and Alexandre Bec}
}
@article {5607,
	title = {Temporal variation of secondary migrations potential: concept of temporal windows in four commercial bivalve species},
	journal = {Aquatic Living Resources},
	volume = {31},
	year = {2018},
	month = {08/2018},
	pages = {1-9},
	abstract = {<p>Post-settlement dispersal potential of four commercial bivalve species (<em>Mytilus edulis</em>, <em>Pecten maximus</em>, <em>Venus verrucosa</em> and <em>Ruditapes philippinarum</em>) were studied through the assessment of recruits{\textquoteright} sinking velocities by using a sinking velocity tube of five meters height. In parallel, dynamics of shear stress were monitored for five months on a tidal habitat characterized by the presence and the dispersal of the four species. By coupling both datasets we propose first theoretical estimates of temporal windows of secondary migrations. These experiments revealed interspecific differences in migration potential relate to shell shapes and behaviour, especially to secretion of byssal threads. The sensitivity to passive and active post-settlement migrations seems to rely on the\&nbsp;synchronisation between the arrival on the sediment, the tidal regime (spring tide, neap tide), but also the rate of growth of the recruits. The present study confirms that patterns of secondary migrations of bivalve recruits result from a close physical-biological coupling involving benthic boundary layer (BBL) hydrodynamics and shell morphology as well as eco-ethological responses to environmental conditions but clearly modulated by the growth dynamics until a threshold size when drifting is no longer possible.</p>
},
	keywords = {Bivalves recruits, drifting, secondary migrations, temporal windows},
	doi = { 	https://doi.org/10.1051/alr/2018007 },
	url = {https://www.alr-journal.org/articles/alr/abs/2018/01/alr170158/alr170158.html},
	author = {Martin For{\^e}t and R{\'e}jean Tremblay and Urs Neumeier and Fr{\'e}d{\'e}ric Olivier}
}
@article {8981,
	title = {Trophic cues promote secondary migrations of bivalve recruits in a highly dynamic temperate intertidal system},
	journal = {Ecosphere},
	volume = {9},
	year = {2018},
	month = {Apr-12-2018},
	pages = {e02510},
	issn = {2150-8925},
	doi = {10.1002/ecs2.2018.9.issue-1210.1002/ecs2.2510},
	url = {https://onlinelibrary.wiley.com/toc/21508925/9/12},
	author = {Foret, Martin and Barbier, Pierrick and Tremblay, Rejean and Meziane, Tarik and Neumeier, Urs and Duvieilbourg, Eric and Olivier, Fr{\'e}d{\'e}ric}
}
@article {8982,
	title = {Trophic cues promote secondary migrations of bivalve recruits in a highly dynamic temperate intertidal system},
	journal = {Ecosphere},
	volume = {9},
	year = {2018},
	month = {Apr-12-2018},
	pages = {e02510},
	issn = {2150-8925},
	doi = {10.1002/ecs2.2018.9.issue-1210.1002/ecs2.2510},
	url = {https://onlinelibrary.wiley.com/toc/21508925/9/12},
	author = {Foret, Martin and Barbier, Pierrick and Tremblay, Rejean and Tarik Meziane and Neumeier, Urs and Duvieilbourg, Eric and Olivier, Fr{\'e}d{\'e}ric}
}
@article {5922,
	title = {Trophic ecology of speckled peacock bass Cichla temensis Humboldt 1821 in the middle Negro River, Amazon, Brazil},
	journal = {Ecology of Freshwater Fish},
	volume = {27},
	year = {2018},
	pages = {1076{\textendash}1086},
	doi = {10.1111/eff.12416},
	url = {https://doi.org/10.1111/eff.12416},
	author = {Jamerson Aguiar-Santos and Pieter A. P. deHart and Marc Pouilly and Carlos E.C. Freitas and Fl{\'a}via K. Siqueira-Souza}
}
@article {6666,
	title = {A Bayesian two-stage biomass model for stock assessment of data-limited species: An application to cuttlefish (Sepia officinalis) in the English Channel},
	journal = {Fisheries Research},
	volume = {191},
	year = {2017},
	pages = {131-143},
	abstract = {Cuttlefish is a key commercial species in the English Channel fishery in terms of landings and value. Age-based assessment methods are limited by time-consuming age determination with statoliths and the lack of stock assessment models tailored to this data-limited species. A two-stage biomass model is developed in the Bayesian state-space modelling framework that allows inferences to be made on the stock biomass at the start, middle and end of each fishing seasons between 1992 and 2014, while accounting for both process and measurement errors and to assimilate various sources of information. A method that uses ancillary length-frequency data is developed to provide an informative prior distribution for the biomass growth rate parameter g (E\&nbsp;=\&nbsp;0.89) and its annual variability (CV\&nbsp;=\&nbsp;0.1). The new model is a substantial improvement on the existing stock assessment method used by the International Council for the Exploration of the Seas. Taking into consideration a time-varying g parameter provides a more ecologically meaningful model with regard to the sensitivity of the cuttlefish population dynamics to environmental fluctuations and improves model fit. The model also provides predictions of the unexploited biomass in winter, which is based on survey data, and helps manage the stock in the event of strong depletion. {\textcopyright} 2017 Elsevier B.V.},
	issn = {01657836},
	doi = {10.1016/j.fishres.2017.03.010},
	url = {http://www.sciencedirect.com/science/article/pii/S0165783617300772},
	author = {Juliette Alemany and Etienne Rivot and Foucher, Eric and Jo{\"e}l Vigneau and Jean-Paul Robin}
}
@article {5166,
	title = {Bioaccumulation, distribution and elimination of chlordecone in the giant freshwater prawn Macrobrachium rosenbergii: Field and laboratory studies},
	journal = {Chemosphere},
	volume = {185},
	year = {2017},
	pages = {888 - 898},
	abstract = {<p>Abstract Chlordecone is a persistent organochlorine pesticide that has been widely used in Guadeloupe (French West Indies) to control the banana weevil Cosmopolites sordidus from 1972 to 1993. A few years after its introduction, widespread contamination of soils, rivers, wild animals and aquatic organisms was reported. Although high chlordecone concentrations have been reported in several crustacean species, its uptake, internal distribution, and elimination in aquatic species have never been described. This study aimed at investigating the accumulation and tissue distribution of chlordecone in the giant freshwater prawn Macrobrachium rosenbergii, using both laboratory (30 days exposure) and field (8 months exposure) approaches. In addition, depuration in chlordecone-free water was studied. Results showed that chlordecone bioconcentration in prawns was dose-dependent and time-dependent. Moreover, females appeared to be less contaminated than males after 5 and 7 months of exposure, probably due to successive spawning leading in the elimination of chlordecone through the eggs. Chlordecone distribution in tissues of exposed prawns showed that cephalothorax organs, mainly represented by the hepatopancreas, was the most contaminated. Results also showed that chlordecone was accumulated in cuticle, up to levels of 40\% of the chlordecone body burden, which could be considered as a depuration mechanism since chlordecone is eliminated with the exuviae during successive moults. Finally, this study underlined the similarity of results obtained in laboratory and field approaches, which highlights their complementarities in the chlordecone behaviour understanding in M.\&nbsp;rosenbergii.</p>
},
	keywords = {Bioaccumulation factor},
	issn = {0045-6535},
	doi = {https://doi.org/10.1016/j.chemosphere.2017.07.099},
	url = {http://www.sciencedirect.com/science/article/pii/S0045653517311529},
	author = {Anne Lafontaine and Eric Gismondi and Nathalie Dodet and C{\'e}lia Joaquim-Justo and C{\'e}line Boulang{\'e}-Lecomte and Fanny Caupos and Lemoine, Soazig and Laurent Lagadic and Jo{\"e}lle Forget-Leray and Jean-Pierre Thom{\'e}}
}
@article {5907,
	title = {Checklist of the marine fishes from metropolitan {France}},
	journal = {Cybium},
	year = {2017},
	doi = {10.26028/cybium/2017-414-006},
	url = {http://sfi-cybium.fr/fr/checklist-marine-fishes-metropolitan-france},
	author = {Philippe B{\'e}arez and Patrice Pruvost and Eric Feunteun and S.P. Igl{\'e}sias and Patrice Francour and Causse, Romain and De Mazieres J. and Tercerie, S and Bailly, Nicolas}
}
@article {4751,
	title = {{Cross-taxon congruence in the rarity of subtidal rocky marine assemblages : No taxonomic shortcut for conservation monitoring}},
	journal = {Ecological Indicators},
	volume = {77},
	year = {2017},
	pages = {239{\textendash}249},
	abstract = {The implementation of protection strategies such as the European Marine Strategy Framework Directive (2008/56/EC) is impeded for subtidal rock bottom habitats because of high sampling costs due to a very wide taxonomic diversity, and a lack of suitable evaluation tools to estimate their conservation importance. In this study, we seek to provide an evaluation procedure by (1) investigating the distribution of rarity among subtidal rock bottom phyla; (2) searching for potential surrogate phyla with a cross-taxon congruence approach based on their rarity; (3) proposing an appropriate multi-phyla indicator to evaluate the importance of subtidal rocky habitats for conservation. We analysed the distribution of 548 species belonging to 8 phyla sampled in 137 assemblages in subtidal rocky areas located around Brittany, Western France. We applied the Index of Relative Rarity, a flexible method which fits rarity weights to species depending on their respective phyla. We found only weak congruence in rarity patterns among phyla, which prevented any attempt to identify surrogate phyla. This finding has important implications for the conservation of subtidal rocky habitats as it means that there is no shortcut to monitor their rarity: working on a subset of phyla would imply a biased evaluation of biodiversity. Consequently, we propose a multi-phyla Index of Relative Rarity combining all phyla which allowed us to successfully describe rarity patterns across all sampled sites.},
	keywords = {occurrence-based rarity, subtidal conservation},
	issn = {1470-160X},
	doi = {10.1016/j.ecolind.2017.02.012},
	url = {http://dx.doi.org/10.1016/j.ecolind.2017.02.012},
	author = {Leroy, Boris and R{\'e}gis Gallon and Eric Feunteun and Robuchon, Marine and Fr{\'e}d{\'e}ric Ysnel}
}
@article {5031,
	title = {Dynamics of DNA methylomes underlie oyster development},
	journal = {PLoS Genetics},
	volume = {13},
	year = {2017},
	month = {06/2017},
	pages = {e1006807},
	type = {Research Paper},
	url = {https:// doi.org/10.13 71/journal.p gen.1006807},
	author = {Guillaume Rivi{\`e}re and Yan He and Samuele Tecchio and Elizabeth Crowell and Micha{\"e}l Gras and Pascal Sourdaine and Guo, Ximing and Pascal Favrel}
}
@article {6667,
	title = {Dynamics of particulate organic matter composition in coastal systems: A spatio-temporal study at multi-systems scale},
	journal = {Progress in Oceanography},
	volume = {156},
	year = {2017},
	pages = {221-239},
	abstract = {In coastal systems, the multiplicity of sources fueling the pool of particulate organic matter (POM) leads to divergent estimations of POM composition. Eleven systems (two littoral systems, eight embayments and semi-enclosed systems and one estuary) distributed along the three maritime fa{\c c}ades of France were studied for two to eight years in order to quantify the relative contribution of organic matter sources to the surface-water POM pool in coastal systems. This study was based on carbon and nitrogen elemental and isotopic ratios, used for running mixing models. The POM of the estuary is dominated by terrestrial material (93\% on average), whereas the POM of the other systems is dominated by phytoplankton (84\% on average). Nevertheless, for the latter systems, the POM composition varies in space, with (1) systems where POM is highly composed of phytoplankton (>=93\%), (2) systems characterized by a non-negligible contribution of benthic (8{\textendash}19\%) and/or river (7{\textendash}19\%) POM sources, and (3) the Mediterranean systems characterized by the contribution of diazotroph organisms (ca. 14\%). A continent-to-ocean gradient of river and/or benthic POM contribution is observed. Finally, time series reveal (1) seasonal variations of POM composition, (2) differences in seasonality between systems, and (3) an inshore-offshore gradient of seasonality within each system that were sampled at several stations. Spatial and seasonal patterns of POM composition are mainly due to local to regional processes such as hydrodynamics and sedimentary hydrodynamic (e.g. resuspension processes, changes in river flows, wind patterns influencing along-shore currents) but also due to the geomorphology of the systems (depth of the water column, distance to the shore). Future studies investigating the link between these forcings and POM composition would help to better understand the dynamics of POM composition in coastal systems. {\textcopyright} 2017 Elsevier Ltd},
	keywords = {bacterium, benthos, biogeochemistry, Biological materials, C and n stable isotopes, C:N ratio, Carbon, carbon isotope, Coastal systems, coastal zone, Fluid dynamics, France, geomorphology, Hydrodynamics, Isotopes, isotopic ratio, Mediterranean sea, Meta analysis, meta-analysis, Mixing, Mixing models, nitrogen isotope, Organic compounds, particulate organic matter, Particulate organic matters, Phytoplankton, prokaryote, Rivers, seasonality, spatiotemporal analysis, stable isotope, Surface water, Surface waters, terrestrial deposit, Time series},
	issn = {00796611},
	doi = {10.1016/j.pocean.2017.03.001},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0079661116301914},
	author = {Li{\'e}nart, Camilla and Savoye, Nicolas and Bozec, Yann and Elsa Breton and Conan, Pascal and David, Val{\'e}rie and Eric Feunteun and Karine Granger{\'e} and Kerherv{\'e}, P. and Lebreton, B. and S{\'e}bastien Lefebvre and St{\'e}phane L{\textquoteright}Helguen and Mousseau, Laure and Raimbault, P and Richard, P. and Riera, P. and Sauriau, P.-G. and Gauthier Schaal and Aubert, F. and Aubin, S. and Bichon, S. and Boinet, C. and Bourasseau, L. and Br{\'e}ret, M. and Caparros, J. and Cariou, T. and Charlier, K. and Claquin, P. and Vincent Cornille and Corre, A.-M. and Costes, L. and Crispi, O. and Muriel Crouvoisier and Czamanski, M. and Del Amo, Y. and Derriennic, H. and Dindinaud, F. and Durozier, M. and Hanquiez, V. and Antoine Nowaczyk and Devesa, J. and Ferreira, S. and Fornier, M. and Garcia, F. and Garcia, N. and Geslin, S. and Emilie Grossteffan and Gueux, A. and Guillaudeau, J. and Guillou, G. and Joly, O. and Lachauss{\'e}e, N. and Lafont, M. and Lamoureux, J. and Lecuyer, E. and Lehodey, J.-P. and Lemeille, D. and Leroux, C. and Mac{\'e}, E. and Maria, E. and Pineau, P. and Petit, F. and Pujo-Pay, M. and Rimelin-Maury, P. and Sultan, E.}
}
@article {5026,
	title = {The impact of suspended oyster farming on nitrogen cycling and nitrous oxide production in a sub-tropical Australian estuary},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {192},
	year = {2017},
	pages = {117 - 127},
	abstract = {<p>In this study we quantified nitrate (NO3-) reduction (denitrification, anammox and DNRA) and N2O production in sediments and epibiont communities associated with Sydney Rock Oyster (Saccostrea glomerata) farming. In sediments beneath an active suspended oyster farm, DNRA accounted for 98\% of NO3- reduction with rates of up to 169\&nbsp;{\textpm}\&nbsp;45\&nbsp;μmol\&nbsp;N m-2 h-1. Much of this DNRA was fuelled by NO3- derived from nitrification. Reference sediments had significantly lower DNRA rates of 83.8\&nbsp;{\textpm}\&nbsp;28.2\&nbsp;μmol\&nbsp;N m-2 h-1, however this constituted 96\% of the sites total NO3- reduction. Fatty acid analysis showed that sediment organic matter was more labile in the oyster impacted sediments, facilitating subtle shifts in sediment oxygen demand which increased the Fe2+ availability with respect to the reference sediments. The difference in DNRA rate between the sites was attributed to autotrophic oxidation of soluble Fe2+ in sediments underlying the oyster cultures. DNRA was absent in the oyster shell epibiont communities and rates of anammox and denitrification were lower than in the sediments. Production of NH4+ from the oysters and their associated epibionts was larger than DNRA and reached a rate of 206.2\&nbsp;μmol\&nbsp;N m-2 h-1. Nitrous oxide production rates were generally low compared to other aquaculture systems and the net flux of N2O for the combined oyster cultivation system (i.e. sediments plus epibionts) was negative, i.e. there was N2O consumption in the sediments beneath the oysters. Overall, subtropical suspended oyster farming systems favour inorganic N retention over N loss.</p>
},
	keywords = {Dissimilatory nitrate reduction to ammonium},
	issn = {0272-7714},
	doi = {http://dx.doi.org/10.1016/j.ecss.2017.05.007},
	url = {http://www.sciencedirect.com/science/article/pii/S0272771417301592},
	author = {Dirk V. Erler and David T. Welsh and William W. Bennet and Tarik Meziane and C{\'e}dric Hubas and Daniele Nizzoli and Angus J.P. Ferguson}
}
@article {5152,
	title = {Inter and intra-specific growth and domoic acid production in relation to nutrient ratios and concentrations in Pseudo-nitzschia: phosphate an important factor},
	journal = {Harmful Algae},
	volume = {64},
	year = {2017},
	pages = {11-19},
	abstract = {<p>The factors responsible for inducing the synthesis of toxins and responses from toxic phytoplankton<br />
blooms remain unclear. In this study we compare the influence of genotypic (at both the intra and<br />
interspecific levels) and environmental factors (nutrient concentration and ratio) on growth (in terms of<br />
cell densities) and domoic acid (DA) production in three Pseudo-nitzschia species: P. australis, P.pungens<br />
and P.fradulenta. A strong phosphate effect was detected. More precisely, a low initial concentration in<br />
phosphate, even at high initial nitrogen and silicate concentrations, induced the highest DA<br />
concentrations and the lowest cell densities in all strains/species studied. In contrast, a low initial<br />
concentration of nitrogen and silicate combined, with a higher phosphate concentration resulted in low<br />
cell densities, but without high DA production. Inter-species effects were also observed in DA production,<br />
where P. australis represented the most toxigenic species of all. Intra-specific variations were only<br />
moderate, except for a recently isolated P. australis strain, suggesting the influence of time since isolation<br />
on the physiology and DA production of Pseudo-nitzschia species. Overall, the lack of strong interaction<br />
between environmental and genotypic factors showed that the various genotypes investigated did not<br />
extensively diverge in their ability to respond (in terms of DA production and cell densities) to contrasting<br />
nutrient supply.</p>
},
	doi = {http://dx.doi.org/10.1016/j.hal.2017.03.001},
	url = {https://www.sciencedirect.com/science/article/pii/S1568988316303687},
	author = {Lema, Kimberley A. and Latimier, Marie and N{\'e}zan, Elisabeth and Juliette Fauchot and Le Gac, Mickael}
}
@article {5365,
	title = {Le cas des r{\'e}cifs d{\textquoteright}hermelles Nuisible ou patrimonial : l{\textquoteright}{\'e}volution des perceptions en milieu marin},
	journal = {Le Courrier de la Nature},
	volume = {306},
	year = {2017},
	pages = {46-49},
	issn = {0011-047},
	author = {Patrick Le Mao and Nicolas Desroy and J{\'e}r{\^o}me Fournier and Laurent Godet and Eric Thi{\'e}baut}
}
@article {8571,
	title = {Marine Mammals Exploring the Oceans Pole to Pole: A Review of the MEOP Consortium},
	journal = {Oceanography},
	volume = {30},
	year = {2017},
	month = {Jan-06-2017},
	pages = {132 - 138},
	issn = {10428275},
	doi = {10.5670/oceanog10.5670/oceanog.2017.234},
	url = {https://tos.org/oceanography/},
	author = {Treasure, Anne and Roquet, Fabien and Ansorge, Isabelle and Bester, Marth{\'a}n and Boehme, Lars and Bornemann, Horst and Charrassin, Jean-Beno{\^\i}t and Chevallier, Damien and Costa, Daniel and Fedak, Mike and Guinet, Christophe and Hammill, Mike and Harcourt, Robert and Hindell, Mark and Kovacs, Kit and Lea, Mary-Anne and Lovell, Phil and Lowther, Andrew and Lydersen, Christian and McIntyre, Trevor and McMahon, Clive and Muelbert, M{\^o}nica and Nicholls, Keith and Picard, Baptiste and Reverdin, Gilles and Trites, Andrew and Williams, Guy and de Bruyn, P.J. Nico}
}
@article {5231,
	title = {Mercury contamination level and speciation inventory in Lakes Titicaca and Uru-Uru (Bolivia): Current status and future trends},
	journal = {Environmental Pollution},
	volume = {231, Part 1},
	year = {2017},
	pages = {262 - 270},
	abstract = {<p>Aquatic ecosystems of the Bolivian Altiplano (\~{}3800 m a.s.l.) are characterized by extreme hydro-climatic constrains (e.g., high UV-radiations and low oxygen) and are under the pressure of increasing anthropogenic activities, unregulated mining, agricultural and urban development. We report here a complete inventory of mercury (Hg) levels and speciation in the water column, atmosphere, sediment and key sentinel organisms (i.e., plankton, fish and birds) of two endorheic Lakes of the same watershed differing with respect to their size, eutrophication and contamination levels. Total Hg (THg) and monomethylmercury (MMHg) concentrations in filtered water and sediment of Lake Titicaca are in the lowest range of reported levels in other large lakes worldwide. Downstream, Hg levels are 3-10 times higher in the shallow eutrophic Lake Uru-Uru than in Lake Titicaca due to high Hg inputs from the surrounding mining region. High percentages of MMHg were found in the filtered and unfiltered water rising up from \&lt;1 to \~{}50\% THg from the oligo/hetero-trophic Lake Titicaca to the eutrophic Lake Uru-Uru. Such high \%MMHg is explained by a high in situ MMHg production in relation to the sulfate rich substrate, the low oxygen levels of the water column, and the stabilization of MMHg due to abundant ligands present in these alkaline waters. Differences in MMHg concentrations in water and sediments compartments between Lake Titicaca and Uru-Uru were found to mirror the offset in MMHg levels that also exist in their respective food webs. This suggests that in situ MMHg baseline production is likely the main factor controlling MMHg levels in fish species consumed by the local population. Finally, the increase of anthropogenic pressure in Lake Titicaca may probably enhance eutrophication processes which favor MMHg production and thus accumulation in water and biota.</p>
},
	keywords = {Titicaca},
	issn = {0269-7491},
	doi = {https://doi.org/10.1016/j.envpol.2017.08.009},
	url = {https://www.sciencedirect.com/science/article/pii/S0269749117320572},
	author = {S. Gu{\'e}dron and D. Point and D. Acha and S. Bouchet and P.A. Baya and E. Tessier and M. Monperrus and C.I. Molina and A. Groleau and Laurent Chauvaud and J. Thebault and E. Amice and L. Alanoca and C. Duwig and G. Uzu and Lazzaro, Xavier and A. Bertrand and S. Bertrand and C. Barbraud and K. Delord and Gibon, Francois-Marie and C. Ibanez and M. Flores and P. Fernandez Saavedra and M.E. Ezpinoza and C. Heredia and F. Rocha and C. Zepita and D. Amouroux}
}
@article {G{\'e}rard20172211,
	title = {Metazoan parasite communities in Alosa alosa (Linnaeus, 1758) and Alosa fallax (Lac{\'e}p{\`e}de, 1803) (Clupeidae) from North-East Atlantic coastal waters and connected rivers},
	journal = {Parasitology Research},
	volume = {116},
	number = {8},
	year = {2017},
	note = {cited By 1},
	pages = {2211-2230},
	doi = {10.1007/s00436-017-5525-8},
	url = {https://link.springer.com/article/10.1007\%2Fs00436-017-5525-8},
	author = {G{\'e}rard, C. and Herv{\'e}, M. and Gay, M. and Bourgau, O. and Eric Feunteun and Anthony Acou and R{\'e}veillac, E.}
}
@article {4626,
	title = {Molecular characterization of an adipokinetic hormone-related neuropeptide (AKH) from a mollusk},
	journal = {General and Comparative Endocrinology},
	volume = {243},
	year = {2017},
	pages = {15-21},
	author = {Marie-Pierre Dubos and Bernay, Beno{\^\i}t and Pascal Favrel}
}
@article {4725,
	title = {Nursery function of coastal temperate benthic habitats: New insight from the bivalve recruitment perspective},
	journal = {Journal of Sea Research},
	volume = {121},
	year = {2017},
	pages = {11-23},
	abstract = {<p><br />
Marine habitat function has been typically investigated in terms of biogeochemical regulation but rarely in terms of population renewal, which is mainly controlled by recruitment dynamics. The recruitment phase is crucial for<br />
organisms with a bentho-pelagic life cycle, such as bivalves, and it regulates the population renewal success. This study provides new insight on the role of temperate benthic habitats on bivalve recruitment, as a function of<br />
nursery areas. Six dominant benthic habitats of the Chausey archipelago (Normandy, France) were studied. In each habitat, bivalve recruit assemblages were described at the end of two reproductive seasons. Furthermore, Ostrea edulis<br />
juveniles were immerged on each habitat during two months to compare growth performances and feeding status, estimated by fatty acid composition. Recruit assemblages differ from each habitat according to sediment grain-size composition and bathymetrical levels. Subtidal habitats, and especially Crepidula fornicata banks and Glycymeris glycymeris coarse sands, supported the highest species abundance and richness of recruits. All O. edulis juveniles fed on the same trophic resources but digestive glands of juveniles from C. fornicata banks were more concentrated in total fatty acids than those from subtidal G. glycymeris coarse sands and maerl banks. Our results depict the key role of subtidal and structured habitats, composed of ecosystem engineers, in enhancing bivalve recruitment and extending the bivalve population renewal. This study suggests that the crucial role of<br />
these habitats as bivalve nurseries must be integrated in management perspectives</p>
},
	author = {Pierrick Barbier and Tarik Meziane and For{\^e}t, M and R{\'e}jean Tremblay and Robert, R and Fr{\'e}d{\'e}ric Olivier}
}
@article {Thorel2017192,
	title = {Nutrient ratios influence variability in Pseudo-nitzschia species diversity and particulate domoic acid production in the Bay of Seine (France)},
	journal = {Harmful Algae},
	volume = {68},
	year = {2017},
	note = {cited By 15},
	pages = {192-205},
	publisher = {Elsevier B.V.},
	abstract = {The population dynamics of different Pseudo-nitzschia species, along with particulate domoic acid (pDA) concentrations, were studied from May 2012 to December 2013 in the Bay of Seine (English Channel, Normandy). While Pseudo-nitzschia spp. blooms occurred during the two years of study, Pseudo-nitzschia species diversity and particulate domoic acid concentrations varied greatly. In 2012, three different species were identified during the spring bloom (P. australis, P. pungens and P. fraudulenta) with high pDA concentrations (\~{}1400 ng l-1) resulting in shellfish harvesting closures. In contrast, the 2013 spring was characterised by a P. delicatissima bloom without any toxic event. Above all, the results show that high pDA concentrations coincided with the presence of P. australis and with potential silicate limitation (Si:N \&lt; 1), while nitrate concentrations were still replete. The contrasting environmental conditions between 2012 and 2013 highlight different environmental controls that might favour the development of either P. delicatissima or P. australis. This study points to the key role of Pseudo-nitzschia diversity and cellular toxicity in the control of particulate domoic acid variations and highlights the fact that diversity and toxicity are influenced by nutrients, especially nutrient ratios. {\textcopyright} 2017 Elsevier B.V.},
	keywords = {analogs and derivatives, analysis, Bay, Bays, Biodiversity, chemistry, Diatom, Diatoms, Domoic acid, France, Geography, kainic acid, Nitrates, nitric acid derivative, particulate matter, phosphate, Phosphates, Physiology, Phytoplankton, Principal Component Analysis, season, Seasons, species difference, Species Specificity, time factor, Time Factors},
	issn = {15689883},
	doi = {10.1016/j.hal.2017.07.005},
	url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85028543709\&doi=10.1016\%2fj.hal.2017.07.005\&partnerID=40\&md5=def23b37b0d16a1ae7ab65a7ef2b940b},
	author = {Thorel, Maxine and Pascal Claquin and Mathilde Schapira and Romain Le Gendre and Riou, Philippe and Didier Goux and Bertrand Le Roy and Raimbault, V and Deton-Cabanillas, A.-F. and Bazin, Pauline and Kientz-Bouchart, Val{\'e}rie and Juliette Fauchot}
}
@article {5143,
	title = {Nutrient ratios influence variability in Pseudo-nitzschia species diversity and particulate domoic acid production in the Bay of Seine (France)},
	journal = {Harmful Algae},
	volume = {68},
	year = {2017},
	pages = {192 - 205},
	abstract = {<p>The population dynamics of different Pseudo-nitzschia species, along with particulate domoic acid (pDA) concentrations, were studied from May 2012 to December 2013 in the Bay of Seine (English Channel, Normandy). While Pseudo-nitzschia spp. blooms occurred during the two years of study, Pseudo-nitzschia species diversity and particulate domoic acid concentrations varied greatly. In 2012, three different species were identified during the spring bloom (P. australis, P. pungens and P. fraudulenta) with high pDA concentrations (\~{}1400\&nbsp;ng\&nbsp;l-1) resulting in shellfish harvesting closures. In contrast, the 2013 spring was characterised by a P. delicatissima bloom without any toxic event. Above all, the results show that high pDA concentrations coincided with the presence of P. australis and with potential silicate limitation (Si:N\&nbsp;\&lt;\&nbsp;1), while nitrate concentrations were still replete. The contrasting environmental conditions between 2012 and 2013 highlight different environmental controls that might favour the development of either P. delicatissima or P. australis. This study points to the key role of Pseudo-nitzschia diversity and cellular toxicity in the control of particulate domoic acid variations and highlights the fact that diversity and toxicity are influenced by nutrients, especially nutrient ratios.</p>
},
	keywords = {Bloom dynamics, Domoic acid, English Channel, Nutrient ratios, Pseudo-nitzschia Species diversity},
	issn = {1568-9883},
	doi = {https://doi.org/10.1016/j.hal.2017.07.005},
	url = {http://www.sciencedirect.com/science/article/pii/S1568988317300148},
	author = {Thorel, Maxine and Pascal Claquin and Mathilde Schapira and Romain Le Gendre and Riou, Philippe and Goux, Didier and Le Roy, Bertrand and Raimbault, V and Deton-Cabanillas, Anne-Flore and Bazin, Pauline and Kientz-Bouchart, Val{\'e}rie and Juliette Fauchot}
}
@article {7900,
	title = {Is personality of young fish consistent through different behavioural tests?},
	journal = {Applied Animal Behaviour Science},
	volume = {194},
	year = {2017},
	month = {Jan-09-2017},
	pages = {127 - 134},
	abstract = {Most studies carried out on personality recognized that personality is defined by behavioural traits consistent through time and/or contexts. In\&nbsp;fish, most studies on personality were performed either on juveniles (aged between 6 months and 1 year) or adults, but very few focused on the early life stages. The main goal of this study is to characterize behavioural syndromes and to highlight the existence of a personality in young juvenile pikeperch, a species with a strong economic value. To study the consistency of behavioural responses of juvenile (50 and 64 days post-hatch) pikeperch\&nbsp;Sander lucioperca\&nbsp;(n = 41, total length = 5.8 {\textpm} 1.0 cm and mass = 1.6 {\textpm} 0.7 g), we performed three tests per\&nbsp;fish in one day: exploration (cross-maze), dyadic and restraint test. In the cross-maze test, exploratory\&nbsp;fish were more active and bolder. In the dyadic test,\&nbsp;fish with the highest number of contacts, showed also more approaches, orientations and avoidance behaviours. In the restraint test, bolder\&nbsp;fish were more active and tried to escape more often. Consequently, the investigation of the different behavioural responses of each\&nbsp;fish highlighted behavioural syndromes in this species. Furthermore, for the\&nbsp;first time, we showed, with a cross-context analysis, that young juvenile pikeperch, responded in the same way to exploration and dyadic test but their responses were opposite in the restraint test. Our results opened new opportunities for testing individual personality in very young\&nbsp;fish that may help solving some aquaculture problems, such as intra-cohort cannibalism.},
	keywords = {Behavioural syndromes, behavioural tests, Individual personality, Pikeperch juveniles, Sander lucioperca},
	issn = {01681591},
	doi = {10.1016/j.applanim.2017.05.012},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0168159117301545},
	author = {Tatiana Colchen and Faux, E. and Teletchea, F. and Pasquet, A.}
}
@article {4687,
	title = {Phylogeography of the reef-building polychaetes of the genus Phragmatopoma in the western Atlantic Region},
	journal = {Journal of Biogeography},
	volume = {44},
	year = {2017},
	month = {06/2017},
	pages = {1612-1625},
	abstract = {<p>Aim</p>

<p>To verify the synonymy of the reef-building polychaete Phragmatopoma caudata (described for the Caribbean) and Phragmatopoma lapidosa (described for Brazil) using molecular data. To evaluate the patterns of genetic diversity and connectivity among populations from Florida to South Brazil.</p>

<p>Location</p>

<p>Intertidal zone in the western Atlantic biogeographical Region: Brazil, eastern Caribbean and Florida (USA).</p>

<p>Methods</p>

<p>DNA sequence data from one mitochondrial (cox-1) and one nuclear ribosomal (ITS-1) loci were obtained from 11 populations of P. caudata spanning the coasts of Brazil, eastern Caribbean and Florida. Phylogenetic relationships among populations of P. caudata and other members of the genus were inferred by Bayesian methods. Population differentiation was evaluated by Bayesian analysis of population structure (baps), AMOVA and pairwise φst. Demographic history was inferred by Bayesian skyline plots.</p>

<p>Results</p>

<p>Phylogenetic inference supported the interpretation of a single species of Phragmatopoma spanning the Brazilian and Caribbean Provinces of the western Atlantic Region. Little population structure was observed across the species distribution, with the exception of the Florida population. The baps analysis supported a 2-population model, with population differentiation being strong and significant between Florida and all other Atlantic populations for cox-1, and significant between Florida and most populations for ITS-1. Differences in genetic diversity were not significant between Caribbean and Brazilian populations, although several populations in Brazil had low values for diversity indices. Bayesian skyline plots indicate population expansion starting at c.\&nbsp;200\&nbsp;ka.</p>

<p>Main conclusions</p>

<p>Phragmatopoma caudata is able to maintain genetic connectivity across most of its geographical range, with population differentiation being observed only between Florida and all other localities, possibly due to ecological speciation in the transition zone between tropical and subtropical environments. Long-distance connectivity across much of the species range is likely the result of long-lived larvae that are tolerant to a wide range of environmental conditions.</p>
},
	doi = {10.1111/jbi.12938},
	author = {Flavia Nunes and Alain Van Wormhoudt and Larisse Faroni Perez and J{\'e}r{\^o}me Fournier}
}
@article {4860,
	title = {Proteomic response of Macrobrachium rosenbergii hepatopancreas exposed to chlordecone: Identification of endocrine disruption biomarkers?},
	journal = {Ecotoxicology and Environmental Safety},
	volume = {141},
	year = {2017},
	pages = {306-314},
	author = {Lafontaine, Anne and Baiwir, Dominique and Joaquim-Justo, C{\'e}lia and de Pauw, Edwin and Lemoine, Soazig and Boulang{\'e}-Lecomte, C{\'e}line and Jo{\"e}lle Forget-Leray and Thom{\'e}, Jean-Pierre and Gismondi, Eric}
}
@article {4757,
	title = {Recurrent DCC gene losses during bird evolution},
	journal = {Scientific Reports},
	volume = {7},
	year = {2017},
	pages = {37569},
	author = {Friocourt, Fran{\c c}ois and Anne-Gaelle Lafont and Kress, Cl{\'e}mence and Pain, Bertrand and Manceau, Marie and Sylvie Dufour and Chedotal, Alain}
}
@article {7901,
	title = {Relationship between individual and group learning in a marine teleost: A case study with sea bass under self-feeding conditions},
	journal = {Learning \& Behavior},
	volume = {45},
	year = {2017},
	month = {Jan-09-2017},
	pages = {276 - 286},
	abstract = {Fish learning and cognition are usually approached by testing single individuals in various devices such as mazes that have serious drawbacks, especially in gregarious species, including the stress induced by the test procedure. This might impair the results and lead to misinterpretation about the learn- ing abilities of the targeted species. In order to provide an alter- native to the individual-based tests, we investigated for the first time the operant conditioning of four similar groups (50 indi- viduals per tank) of sea bass. We used two computerized self- feeder devices per tank, each coupled with individual electronic identification and that were alternately activated during varying positive appetitive reinforcement period of time (7 to 1 day). Learning abilities were examined at both group and individual levels. At the group level, the operant conditioning was dem- onstrated as the triggering activity significantly decreased when\&nbsp;the device was turned off and increased when it was turned on, whatever the reinforcement period duration. The individual level analysis revealed a more complex situation with fish showing different learning performances that can be best ex- plained through the producer-scrounger game theory.},
	keywords = {Group conditions, Operant conditioning, Personality traits, Positive reinforcement, Producer-scrounger, Social structure},
	issn = {1543-4494},
	doi = {10.3758/s13420-017-0266-1},
	url = {http://link.springer.com/10.3758/s13420-017-0266-1},
	author = {Benha{\"\i}m, D. and Ferrari, S. and Tatiana Colchen and Chatain, B. and B{\'e}gout, M-L.}
}
@article {6811,
	title = {Saving Our Marine Archives},
	journal = {Eos},
	year = {2017},
	month = {Dec-02-2018},
	doi = {10.1029/2017EO068159},
	url = {https://eos.org/project-updates/saving-our-marine-archives},
	author = {Dassi{\'e}, Emilie and DeLong, Kristine and Kilbourne, Hali and Williams, Branwen and Abram, Nerilie and Brenner, Logan and Brahmi, Chlo{\'e} and Cobb, Kim and Corr{\`e}ge, Thierry and Dissard, Delphine and Emile-Geay, Julien and Evangelista, Heitor and Evans, Michael and Farmer, Jesse and Felis, Thomas and Gagan, Michael and Gillikin, David and Goodkin, Nathalie and Khodri, Myriam and Lavagnino, Ana and LaVigne, Mich{\`e}le and Claire E. Lazareth and Linsley, Braddock and Lough, Janice and McGregor, Helen and Nurhati, Intan and Ouellette, Gilman and Perrin, Laura and Raymo, Maureen and Rosenheim, Brad and Sandstrom, Michael and Sch{\"o}ne, Bernd and Sifeddine, Abdelfettah and Stevenson, Samantha and Thompson, Diane and Waite, Amanda and Wanamaker, Alan and Wu, Henry}
}
@article {5000,
	title = {Seasonal and latitudinal variation in seagrass mechanical traits across Europe: The influence of local nutrient status and morphometric plasticity},
	journal = {Limnology and Oceanography},
	year = {2017},
	abstract = {<p>Seagrasses are marine flowering plants distributed worldwide. They are however threatened, mostly due to the increase of human activities. Seagrasses have the capacity to adapt their morphological, physiological, and mechanical traits to their local conditions. Mechanical traits have been identified as a good tool to investigate a plant-species capacity to withstand physical forces or disturbances but are still sparsely studied in seagrasses. With this study, we aimed to assess how the mechanical traits of a broadly spread seagrass species vary along a latitudinal gradient in relation to its morphometric plasticity and nutrient status. We found that seagrasses acclimate their mechanical traits in relation to their physiological or morphological traits, both over the growing season and across a latitudinal range: leaves were weaker and thinner in northern areas, particularly at the end of the growing season. Besides the influence of the latitudinal gradient, leaf mechanical strength and stiffness were both strongly affected by their morphometric plasticity. Moreover, we showed that leaves mechanical traits change depending on their nutrient status: leaves were stronger and stiffer in oligotrophic conditions as compared to more eutrophic conditions. Thus, our results imply that, under eutrophication, leaves become weaker and thus more vulnerable to physical forces. This vulnerability is higher in the north at the end of the growing season. The latter is consistent with the more ephemeral character of northern seagrass meadows, in contrast to the more evergreen southern meadows.</p>
},
	doi = {10.1002/lno.10611},
	url = {http://onlinelibrary.wiley.com/doi/10.1002/lno.10611/full},
	author = {L.M. Soissons and M.M. van Katwijk and G. Peralta and F.G. Brun and P.G. Cardoso and T.F. Grilo and B. Ondiviela and M. Recio and M. Valle and J.M. Garmendia and F. Ganthy and I. Auby and L. Rigouin and Laurent Godet and J{\'e}r{\^o}me Fournier and Nicolas Desroy and L. Barill{\'e} and P. Kadel and R. Asmus and P.M.J. Herman and T.J. Bouma}
}
@article {7176,
	title = {Southern Ocean Echinoids database {\textendash} An updated version of Antarctic, Sub-Antarctic and cold temperate echinoid database.},
	journal = {ZooKeys},
	volume = {697},
	year = {2017},
	month = {Feb-09-2018},
	pages = {1 - 20},
	issn = {1313-2989},
	doi = {10.3897/zookeys.697.14746},
	url = {https://zookeys.pensoft.net/articles.php?id=14746},
	author = {Fabri-Ruiz, Salom{\'e} and Sauc{\`e}de, Thomas and Danis, Bruno and David, Bruno}
}
@article {5027,
	title = {Space-time evolution of a large field of pockmarks in the Bay of Concarneau (NW Brittany)},
	journal = {Bulletin de la Soci{\'e}t{\'e} G{\'e}ologique de France},
	year = {2017},
	abstract = {<p>About a decade ago, a large field of pockmarks, covering an overall area of 36 km2 was discovered in water depths of \&lt;30m in the central part of the Bay of Concarneau (Southern Brittany, France). This field, composed of features from 5m to 35m in diameter and \&lt;1m in depth, is characterized by unusual high densities of pockmarks, up to 5840 per square kilometre. Geophysical data correlated with sedimentary samples acquired in 2005 and 2009 show that pockmarks and their immediate surroundings are associated with dense tubes benches cover, built by a filter-feeding amphipod: Haploops nirae, forming original benthic communities. Two complementary surveys were carried out in April 2011 (Pock and Ploops) and April 2014 (Pock and Tide), on the Oceanographic Vedette (O/V) Haliotis (Ifremer/Genavir), to map the limit of the pockmarks and Haploops fields with the maximum accuracy. The link between the presence of the Haploops nirae communities and the occurrence of pockmarks /gas was then established and the proposed hypothesis was that tidal cycles may provide a good candidate for a short-term (monthly) triggering mechanism of fluid expulsion (Baltzer A, Ehrohold A, Rigolet C, Souron A, Cordier C, Clouet H. 2014. Geophysical exploration of an active pockmark field in the Bay of Concarneau, southern Brittany, and implications for resident suspension feeders. Geo-Marine Letters, 34, 215{\textendash}230). Due to the high-level precision (50 cm) of the positioning system (Magellan Aquarius Ixsea Hydrins) coupled with the RTK attitude system, these new bathymetric and imagery maps together with the sub-bottom Chirp profiles, allow us to compare the data sets from April 2011 and April 2014. The superimposition of the two data sets shows that the distribution of the pockmarks remains similar between these 2 dates (i.e. for 3 years), for the group of large, widely scattered pockmarks, which are deeply rooted in the Holocene palaeo-valley infills and for the group of pockmarks identified as the trawl-scour pockmarks, initiated by trawling action. Most of the pockmarks present very recent shapes without any infilling but sonar imagery reveals that some of them have been covered by a thin muddy layer, thereby reflecting, at least, a temporary cessation of expulsion or a different activity. Chirp profiles indicate some acoustic flares above the pockmarks, revealing gas/fluid expulsion. Different gas clues within the sedimentary column, such as acoustic turbidity, enhanced gas reflectors (EGR), chimneys pipes, occur at exactly the same places on the chirp seismic profiles from 2011 and 2014. Therefore, contrary to most examples described in the\&nbsp; literature, this pockmarks field is still active.</p>
},
	doi = {10.1051/bsgf/2017191},
	author = {Agn{\`e}s Baltzer and Marine Reynaud and Axel Ehrhold and J{\'e}r{\^o}me Fournier and C{\'e}line Cordier and H{\'e}l{\`e}ne Clouet}
}
@article {Houssard201749,
	title = {Trophic position increases with thermocline depth in yellowfin and bigeye tuna across the Western and Central Pacific Ocean},
	journal = {Progress in Oceanography},
	volume = {154},
	year = {2017},
	note = {cited By 12},
	pages = {49-63},
	doi = {10.1016/j.pocean.2017.04.008},
	url = {https://www.sciencedirect.com/science/article/pii/S007966111630177X},
	author = {Houssard, P. and Lorrain, A. and Tremblay-Boyer, L. and Allain, V. and Graham, B.S. and Menkes, C.E. and Pethybridge, H. and Couturier, L.I.E. and Point, D. and Leroy, Bruno and Receveur, A. and Hunt, B.P.V. and Vourey, E. and Bonnet, S. and Rodier, M. and Raimbault, P. and Eric Feunteun and Kuhnert, P.M. and Munaron, J.-M. and Lebreton, B. and Otake, T. and Letourneur, Y.}
}
@article {5211,
	title = {Two new ovoviviparous species of the family Selachinematidae and Sphaerolaimidae (Nematoda, Chromadorida and Monhysterida) from the northern South China Sea},
	journal = {Zootaxa},
	volume = {4317},
	year = {2017},
	month = {01/09/2017},
	pages = {95-110},
	abstract = {<p class="rtejustify">Two new ovoviviparous nematode species are described from South China Sea. Bendiella vivipara n. sp. belongs to the family Selachinematidae and is characterized by a cuticle with lateral differentiation of 2{\textendash}4 longitudinal rows of dots, and the presence of 3 papillose precloacal supplements. Parasphaerolaimus jintiani n. sp. is characterized by a cuticle with lateral longitudinal unstriated band extending from about the middle of the pharynx to the anterior two-thirds of the tail and a vulva situated far posteriorly. The importance of ovoviviparity in free living marine nematodes is discussed.</p>
},
	keywords = {Bendiella vivipara n. sp., free-living marine nematodes, ovoviviparity, Parasphaerolaimus jintiani n. sp., South China Sea},
	doi = {10.11646/zootaxa.4317.1.4},
	url = {https://biotaxa.org/Zootaxa/article/view/zootaxa.4317.1.4},
	author = {Sujing Fu and Boucher, G and Lizhe Cai}
}
@article {5044,
	title = {Uses of innovative modeling tools within the implementation of the marine strategy framework directive},
	journal = {Bridging the Gap Between Policy and Science in Assessing the Health Status of Marine Ecosystems},
	year = {2017},
	pages = {75},
	author = {Lynam, Christopher P. and Uusitalo, Laura and Patr{\'\i}cio, Joana and Piroddi, Chiara and Queir{\'o}s, Ana M and Teixeira, Heliana and Rossberg, Axel G. and Sagarminaga, Yolanda and Hyder, Kieran and Nathalie Niquil and M{\"o}llmann, C and Wilson, C and Chust, Guillem and Galpasoro, I and Forster, R and Verissimo, H and Tedesco, Letizia and Revilla, M and Neville, Suzanna}
}
@article {4506,
	title = {Activation of brain steroidogenesis and neurogenesis during the gonadal differentiation in protandrous black porgy, Acanthopagrus schlegelii.},
	journal = {Dev Neurobiol},
	volume = {76},
	year = {2016},
	month = {2016 Feb},
	pages = {121-36},
	abstract = {<p>The early brain development, at the time of gonadal differentiation was investigated using a protandrous teleost, black porgy. This natural model of monosex juvenile fish avoids the potential complexity of sexual dimorphism. Brain neurogenesis was evaluated by histological analyses of the diencephalon, at the time of testicular differentiation (in fish between 90 and 150 days after hatching). Increases in the number of both Nissl-stained total brain cells, and Pcna-immunostained proliferative brain cells were observed in specific area of the diencephalon, such as ventromedialis thalami and posterior preoptic area, revealing brain cell proliferation. qPCR analyses showed significantly higher expression of the radial glial cell marker blbp and neuron marker bdnf. Strong immunohistochemical staining of Blbp and extended cellular projections were observed. A peak expression of aromatase (cyp19a1b), as well as an increase in estradiol (E2 ) content were also detected in the early brain. These data demonstrate that during gonadal differentiation, the early brain exhibits increased E2 synthesis, cell proliferation, and neurogenesis. To investigate the role of E2 in early brain, undifferentiated fish were treated with E2 or aromatase inhibitor (AI). E2 treatment upregulated brain cyp19a1b and blbp expression, and enhanced brain cell proliferation. Conversely, AI reduced brain cell proliferation. Castration experiment did not influence the brain gene expression patterns and the brain cell number. Our data clearly support E2 biosynthesis in the early brain, and that brain E2 induces neurogenesis. These peak activity patterns in the early brain occur at the time of gonad differentiation but are independent of the gonads.</p>
},
	issn = {1932-846X},
	doi = {10.1002/dneu.22303},
	author = {Lin, Chien-Ju and Fan-Chiang, Yi-Chun and Sylvie Dufour and Chang, Ching-Fong}
}
@article {5423,
	title = {Activation of brain steroidogenesis and neurogenesis during the gonadal differentiation in protandrous black porgy, Acanthopagrus schlegelii.},
	journal = {Developmental Neurobiology},
	volume = {76},
	year = {2016},
	pages = {121-136},
	doi = {DOI: 10.1002/dneu.22303},
	author = {Lin, Chien-Ju and Fran-Chiang, Y C and Sylvie Dufour and Chang, Ching-Fong}
}
@article {4246,
	title = {Calcium Deposits in the Crayfish, Cherax quadricarinatus: Microstructure Versus Elemental Distribution},
	journal = {Microscopy and Microanalysis},
	volume = {22},
	year = {2016},
	pages = {22-38},
	type = {Journal Article},
	author = {Gilles Luquet and Yannicke Dauphin and Aline Percot and Murielle Salom{\'e} and Andreas Ziegler and Maria S. Fernandez and Jos{\'e} L. Arias}
}
@article {4265,
	title = {Coastal evolution and sedimentary mobility of Br{\o}gger Peninsula, northwest Spitsbergen},
	journal = {Polar Biology},
	year = {2016},
	month = {03/2016},
	pages = {1-10},
	abstract = {<p>Since the end of the Little Ice Age (LIA), Svalbard glaciers have undergone a net retreat in response to changing meteorological conditions. Located between 76{\textdegree}N and 80{\textdegree}N, western Spitsbergen has seen a climatic transition from a glacial to a paraglacial system. On the northern shore of the Br{\o}gger Peninsula (northwest Spitsbergen), the average temperature increased by 3\&nbsp;{\textdegree}C between 1965 and 2015, and cold-based valley glaciers have retreated more than 1\&nbsp;km from their LIA limits. This rapid deglaciation has exposed large areas of glacigenic sediments being easily reworked by runoff. This has led to the formation of extensive glacier-river delta systems and coastal progradation. Post-LIA coastal progradation and formation of new landforms in Kongsfjorden have been controlled predominantly by substantial availability of glacial sediment. A combination of aerial photographic and field data has been employed to estimate the post-LIA evolution of coastal sandur deltas and their submarine parts (named here {\textquotedblleft}prodeltas{\textquotedblright}). The data set reveals that delta shoreline advance could have reached around 5\&nbsp;m/year. between 1966 and 1990 for the most energetic delta of Austre Lovenbreen, and around 4\&nbsp;m/year between 2011 and 2014 for the most energetic delta of Midtre Lovenbreen. The prodeltas registered a net growth from 2009 to 2012: the biggest, located in the prolongation of deltas of Austre Lovenbreen, measured 1033\&nbsp;m in length in 2009 and 1180\&nbsp;m in length in 2012. This substantial amount of sediment supplied in the fjord has an impact on the fjord ecology, especially on the benthic ecosystem.</p>
},
	keywords = {High Arctic, Paraglacial, Sedimentary flux, Submarine and aerial coastal evolution, Svalbard},
	doi = {10.1007/s00300-016-1930-1},
	author = {Marine Bourriquen and Agn{\`e}s Baltzer and Denis Mercier and J{\'e}r{\^o}me Fournier and Laurent Perez and Sylvain Haquin and Eric Bernard and Maria Ansine Jensen}
}
@article {Boulenger2016281,
	title = {Difference in factors explaining growth rate variability in European eel subpopulations: The possible role of habitat carrying capacity},
	journal = {Ecology of Freshwater Fish},
	volume = {25},
	number = {2},
	year = {2016},
	note = {cited By 1},
	pages = {281-294},
	doi = {10.1111/eff.12209},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12209},
	author = {Boulenger, C. and Crivelli, A.J. and Charrier, F. and Roussel, J.-M. and Eric Feunteun and Anthony Acou}
}
@article {Trancart20169,
	title = {Difference in responses of two coastal species to fluctuating salinities and temperatures: Potential modification of specific distribution areas in the context of global change},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {173},
	year = {2016},
	note = {cited By 3},
	pages = {9-15},
	doi = {10.1016/j.ecss.2016.02.012},
	url = {https://www.sciencedirect.com/science/article/pii/S0272771416300555},
	author = {Thomas Trancart and Eric Feunteun and Lefran{\c c}ois, C. and Anthony Acou and Boinet, C. and Alexandre Carpentier}
}
@article {Lamy201629,
	title = {Dinard Herbarium: History of a Marine Station1},
	journal = {Cryptogamie, Algologie},
	volume = {37},
	number = {1},
	year = {2016},
	note = {cited By 2},
	pages = {29-45},
	doi = {10.7872/crya/v37.iss1.2016.29},
	url = {https://bioone.org/journals/Cryptogamie-Algologie/volume-37/issue-1/v37.iss1.2016.29/Dinard-Herbarium-History-of-a-Marine-Station1/10.7872/crya/v37.iss1.2016.29.short},
	author = {Lamy, Dominique and Robuchon, Marine and Kervran, L. and Dennetiere, B. and Eric Feunteun and Le Gall, L.}
}
@article {Besson2016779,
	title = {Disrupted downstream migration behaviour of European silver eels (Anguilla anguilla, L.) in an obstructed river},
	journal = {Environmental Biology of Fishes},
	volume = {99},
	number = {10},
	year = {2016},
	note = {cited By 13},
	pages = {779-791},
	doi = {10.1007/s10641-016-0522-9},
	url = {https://link.springer.com/article/10.1007/s10641-016-0522-9},
	author = {Besson, M.L. and Thomas Trancart and Anthony Acou and Charrier, F. and Mazel, V. and Legault, A. and Eric Feunteun}
}
@article {7177,
	title = {Echinoids of the Kerguelen Plateau {\textendash} occurrence data and environmental setting for past, present, and future species distribution modelling},
	journal = {ZooKeys},
	volume = {630},
	year = {2016},
	month = {Sep-11-2016},
	pages = {1 - 17},
	issn = {1313-2989},
	doi = {10.3897/zookeys.630.985610.3897/zookeys.630.9856.figure110.3897/zookeys.630.9856.figure2},
	url = {http://zookeys.pensoft.net/articles.php?id=9856},
	author = {Guillaumot, Charl{\`e}ne and Martin, Alexis and Fabri-Ruiz, Salom{\'e} and Eleaume, Marc and Sauc{\`e}de, Thomas}
}
@article {4281,
	title = {Effects of chlordecone on 20-hydroxyecdysone concentration and chitobiase activity in a decapod crustacean, Macrobrachium rosenbergii},
	journal = {Aquatic toxicology},
	year = {2016},
	abstract = {<p>Chlordecone (CLD) is an organochlorine insecticide abundant in aquatic environment of the French West Indies. However, few studies have investigated its impact on freshwater invertebrates. WhereasCLD is suspected of inducingendocrine disruption,this work aimed to study the effects of environmentally relevant concentrations of CLD on the 20-hydroxyecdysone (20-HE) hormone concentration and on the chitobiase activity, both having key roles in the molting process of crustaceans. In addition, the bioaccumulation of CLD was measured in the muscle tissueof Macrobrachium rosenbergiito underline potential dose-response relationship. The results have shown that CLD was bioaccumulated in exposed organisms according to a trend to a dose-response relationship. Moreover, it was observed that CLD decreased the 20-HE concentration in exposed prawns when compared to control, whatever the duration of exposure, as well as it inhibited the chitobiase activity after 30 days of exposure. The present study indicates that CLD could interfere with molting process of M. rosenbergiiby disturbing the 20-HE concentration and the activity of chitobiase, suggesting consequences at the long term on the shrimp development. This study also confirmed that CLD could be an endocrine disruptor in decapod crustaceans, as it was already observed in vertebrates.</p>
},
	keywords = {20-Hydroxyecdysone, Chitobiase, Chlordecone, Endocrine Disruptors, Macrobrachium rosenbergii},
	doi = {10.1016/j.aquatox.2016.04.006},
	author = {Lafontaine, Anne and Gismondi, Eric and Boulang{\'e}-Lecomte, C{\'e}line and Gerraudie, Perrine and Dodet, Nathalie and Campos, Fanny and Lemoine, Soazig and Lagadic, Laurent and Thom{\'e}, Jean-Pierre and Jo{\"e}lle Forget-Leray}
}
@article {4803,
	title = {Empirical observations of the spawning migration of European eels: The long and dangerous road to the Sargasso Sea.},
	journal = {Science Advances},
	year = {2016},
	abstract = {The spawning migration of the European eel (Anguilla anguilla\&nbsp;L.) to the Sargasso Sea is one of the greatest animal migrations. However, the duration and route of the migration remain uncertain. Using fishery data from 20 rivers across Europe, we show that most eels begin their oceanic migration between August and December. We used electronic tagging techniques to map the oceanic migration from eels released from four regions in Europe. Of 707 eels tagged, we received 206 data sets. Many migrations ended soon after release because of predation events, but we were able to reconstruct in detail the migration routes of \&gt;80 eels. The route extended from western mainland Europe to the Azores region, more than 5000 km toward the Sargasso Sea. All eels exhibited diel vertical migrations, moving from deeper water during the day into shallower water at night. The range of migration speeds was 3 to 47 km day-1. Using data from larval surveys in the Sargasso Sea, we show that spawning likely begins in December and peaks in February. Synthesizing these results, we show that the timing of autumn escapement and the rate of migration are inconsistent with the century-long held assumption that eels spawn as a single reproductive cohort in the springtime following their escapement. Instead, we suggest that European eels adopt a mixed migratory strategy, with some individuals able to achieve a rapid migration, whereas others arrive only in time for the following spawning season. Our results have consequences for eel management.},
	doi = {10.1126/sciadv.1501694},
	url = {https://advances.sciencemag.org/content/2/10/e1501694},
	author = {D. Righton and H. Westerberg and Eric Feunteun and F. Okland and P. Gargan and E. Amilhat and J. Metcalfe and J. Lobon-Cervia and N. Sj{\"o}berg and J. Simon and Anthony Acou and M. Vedor and A. Walker and Thomas Trancart and U Br{\"a}mick and K. Aarestrup}
}
@article {4412,
	title = {Extreme landscapes decrease taxonomic and functional bird diversity but promote the presence of rare species},
	journal = {Acta Ornithologica},
	volume = {51},
	year = {2016},
	abstract = {<p>Human activities may generate geometrical landscape (i.e. composed of rectilinear and repetitive landscape units) structures that can significantly influence the spatial distribution of birds. While bird distribution in various landscape types has been extensively studied, the role played by landscape configuration and composition in different facets of bird diversity remains unclear. Here, these two main components of landscape characteristics (i.e. configuration and composition) are disentangled and their relative influence on three different facets of bird assemblages: taxonomic and functional characteristics, and the presence of rare species, is tested. We chose four large coastal salinas of Western France as a relevant model of geometrical and human-dominated landscapes where each landscape unit can be easily identified and mapped. The landscape characteristics of these sites were mapped and quantified. Then, terrestrial breeding birds were sampled in 172 point-counts using a standardized protocol. 69 diurnal terrestrial bird species were detected and considered in analyses (waterbirds and owls excluded). Landscape composition was found to have a higher influence on bird communities than landscape configuration, which fits with the {\textquotedblleft}landscape composition hypothesis{\textquotedblright}. More specifically, the most {\textquotedblleft}extreme{\textquotedblright} landscapes {\textemdash} those with low terrestrial surface areas, low landscape richness and diversity, low cohesion, and very patchy landscapes with complex geometrical shapes {\textemdash} host the lowest bird taxonomic abundance, richness and diversity and functional richness, but are characterized by the presence of rare species (mainly wetland specialist species, e.g. Reed Bunting Emberiza schoeniclus and species with restricted ranges e.g. Bluethroat Luscinia svecica namnetum). Our results suggest that conservation plans in such geometrical and human-dominated habitats should not only focus on one aspect of landscape characteristics or one aspect of biological diversity but also consider the adverse effects of landscape characteristics on these different facets.<br />
\&nbsp;</p>
},
	doi = {10.3161/00016454AO2016.51.1.003},
	author = {Laurent Godet and Vincent Devictor and Fran{\c c}oise Burel and Jean-Guy Robin and Lo{\"\i}c M{\'e}nanteau and J{\'e}r{\^o}me Fournier}
}
@article {Boulenger2016947,
	title = {Factors determining survival of European eels in two unexploited sub-populations},
	journal = {Freshwater Biology},
	volume = {61},
	number = {6},
	year = {2016},
	note = {cited By 3},
	pages = {947-962},
	doi = {10.1111/fwb.12759},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/fwb.12759},
	author = {Boulenger, C. and Anthony Acou and Gimenez, O. and Charrier, F. and Tremblay, J. and Eric Feunteun}
}
@article {4226,
	title = {Geographic variation in stable isotopic and fatty acid composition of anguilliform leptocephali and particulate organic matter in the South Pacific},
	journal = {Marine Ecology and Progress Series},
	volume = {544},
	year = {2016},
	pages = {225-241},
	abstract = {<p>The feeding ecology of leptocephali has remained poorly understood because they apparently feed on particulate organic matter (POM), which varies in composition, and it is unclear which components of the POM they assimilate. The δ13C and δ15N stable isotope (SI) and fatty acid (FA) compositions of 3 families of leptocephali and POM were compared in 3 latitudinal current zones of the western South Pacific. The δ15N signatures of leptocephali and POM overlapped, with both having their lowest values in the southern current zone. POM in general (across all zones) contained 38 FAs and was rich in saturated FAs (SFA) (16:0, 18:0, 14:0), while leptocephali contained 50 FAs, with high proportions of 16:0, and higher contributions of 22:6ω3, 20:5ω3, 18:1ω9, 16:1ω7 and other FAs than found in the POM. Serrivomeridae leptocephali in the north had higher δ15N signatures and were also distinguished from Nemichthyidae and Muraenidae larvae by their FA compositions (higher SFAs, lower 22:6ω3 and 20:5ω3). Although SI signatures of the Serrivomeridae larvae did not clearly vary with size, 16:0 and 18:0 FA proportions decreased with increasing larval size, and 22:6ω3 and 16:1ω7 increased in larger larvae. Correspondences between the latitudinal variations in nitrogen SI signatures and FA compositions of POM with those of leptocephali and the presence of FA markers of both autotrophic and heterotrophic organisms were consistent with leptocephali feeding on POM. POM can contain various materials from primary producers and heterotrophic microorganisms, but differences in the SI signatures and FA compositions in leptocephali remain to be explained through further research.</p>
},
	keywords = {Leptocephali {\textperiodcentered} Fatty acids {\textperiodcentered} Stable isotopes {\textperiodcentered} Biomarkers {\textperiodcentered} Trophic ecology {\textperiodcentered} Oceanic currents},
	isbn = {doi:10.3354/meps11575 },
	author = {Li{\'e}nart, Camilla and Eric Feunteun and Miller, M J and Aoyama, J and Jean-Michel Mortillaro and C{\'e}dric Hubas and Kuroki, M and Watanabe, S and Christine Dupuy and Alexandre Carpentier and Otake, T and Tsukamoto, K and Tarik Meziane}
}
@article {5813,
	title = {{Global impacts of the 1980s regime shift}},
	journal = {Global Change Biology},
	volume = {22},
	year = {2016},
	abstract = {<p>{\textcopyright} 2016 John Wiley {\&amp;} Sons Ltd. Despite evidence from a number of Earth systems that abrupt temporal changes known as regime shifts are important, their nature, scale and mechanisms remain poorly documented and understood. Applying principal component analysis, change-point analysis and a sequential t-test analysis of regime shifts to 72 time series, we confirm that the 1980s regime shift represented a major change in the Earth{\textquoteright}s biophysical systems from the upper atmosphere to the depths of the ocean and from the Arctic to the Antarctic, and occurred at slightly different times around the world. Using historical climate model simulations from the Coupled Model Intercomparison Project Phase 5 (CMIP5) and statistical modelling of historical temperatures, we then demonstrate that this event was triggered by rapid global warming from anthropogenic plus natural forcing, the latter associated with the recovery from the El Chich{\'o}n volcanic eruption. The shift in temperature that occurred at this time is hypothesized as the main forcing for a cascade of abrupt environmental changes. Within the context of the last century or more, the 1980s event was unique in terms of its global scope and scale; our observed consequences imply that if unavoidable natural events such as major volcanic eruptions interact with anthropogenic warming unforeseen multiplier effects may occur.</p>
},
	keywords = {Climate, Earth systems, Global change, Regime shift, Statistical analysis, Time series, Volcanic forcing},
	issn = {13652486},
	doi = {10.1111/gcb.13106},
	author = {Philip Chris Reid and Renata E. Hari and Gr{\'e}gory Beaugrand and David M. Livingstone and Christoph Marty and Dietmar Straile and Jonathan Barichivich and Goberville, Eric and Rita Adrian and Yasuyuki Aono and Ross Brown and James Foster and Pavel Groisman and Pierre H{\'e}laou{\"e}t and Huang-Hsiung Hsu and Richard R Kirby and Jeff Knight and Alexandra Kraberg and Jianping Li and Tzu-Ting Lo and Ranga B. Myneni and Ryan P. North and Alan J. Pounds and Tim Sparks and Ren{\'e} St{\"u}bi and Yongjun Tian and Karen H. Wiltshire and Dong Xiao and Zaichun Zhu}
}
@article {4346,
	title = {How do macrobenthic resources concentrate foraging waders in large megatidal sandflats?},
	journal = {Estuarine, Coastal and Shelf Science},
	year = {2016},
	abstract = {<p>The relationship between foraging shorebirds, macrobenthos and sedimentary parameters has been widely studied across Western Europe. Megatidal areas have large zones uncovered when the water retreats. Consequently, in such cases, the tide also influences foraging activities. This paper examines the use of an intertidal space by waders to define how macrobenthic resource concentrates foraging activity of birds in a large megatidal sandflat. This approach combines accurate spatial distribution of waders (Oystercatcher, Eurasian curlew, Bar-tailed Godwit and Redknot) according to their activity with ecological/biological parameters. A differential exploitation of the flat is clearly shown, with macrobenthic biomass appearing as one of the main explanatory factor for the four species considered on the western part of the bay and altitude (shore elevation) in the eastern part. The novelty of this study relates to the large area, also presumed to be a functional unit, while considering at the same time the singularities of the different parts of the flat. This multi-scale approach identifies important factors influencing the differential distribution patterns observed. The different selected parameters present an important variability in their contribution, underlining the complexity of explaining the distribution of foraging birds. Consequently, the study of such complex phenomena needs to consider additional variables to improve the relevance of explanatory models.</p>
},
	doi = {10.1016/j.ecss.2016.05.023},
	author = {Ponsero, Alain and Sturbois, Anthony and Nicolas Desroy and Patrick Le Mao and Jones, Auriane and J{\'e}r{\^o}me Fournier}
}
@article {4540,
	title = {International Perspectives on the Effects of Climate Change on Inland Fisheries},
	journal = {Fisheries},
	volume = {41},
	year = {2016},
	month = {07/2016},
	pages = {399-405},
	doi = {10.1080/03632415.2016.1182513},
	author = {I.J. Winfield and C. Baigun and P.A. Balykin and B. Becker and Y. Chen and A.F. Filipe and Y.V. Gerasimov and A.L. Godinho and R.M. Hugues and J.D. Koehn and D.N. Kutsyn and V. Mendoza-Portillo and Thierry Oberdorff and A.M. Orlov and A.P. Pedchenko and F. Pletterbauer and I.G. Prado and R. R{\"o}sch and S.J. Vatland}
}
@article {4547,
	title = {Massive yet grossly underestimated global costs of invasive insects},
	journal = {Nature Communications},
	volume = {7},
	year = {2016},
	month = {10/2016},
	pages = {12986},
	abstract = {Insects have presented human society with some of its greatest development challenges by spreading diseases, consuming crops and damaging infrastructure. Despite the massive human and financial toll of invasive insects, cost estimates of their impacts remain sporadic, spatially incomplete and of questionable quality. Here we compile a comprehensive database of economic costs of invasive insects. Taking all reported goods and service estimates, invasive insects cost a minimum of US$70.0 billion per year globally, while associated health costs exceed US$6.9 billion per year. Total costs rise as the number of estimate increases, although many of the worst costs have already been estimated (especially those related to human health). A lack of dedicated studies, especially for reproducible goods and service estimates, implies gross underestimation of global costs. Global warming as a consequence of climate change, rising human population densities and intensifying international trade will allow these costly insects to spread into new areas, but substantial savings could be achieved by increasing surveillance, containment and public awareness.},
	doi = {10.1038/ncomms12986},
	url = {http://www.nature.com/ncomms/2016/161004/ncomms12986/full/ncomms12986.html},
	author = {Bradshaw, Corey J.A. and Leroy, Boris and Bellard, C{\'e}line and Roiz, David and Albert, C{\'e}line and Fournier, Alice and Barbet-Massin, Morgane and Salles, Jean-Michel and Simard, Fr{\'e}d{\'e}ric and Courchamp, Franck}
}
@article {3859,
	title = {Morpho-sedimentology of coastal natural sites colonized by Sand Martin (Riparia riparia)},
	journal = {Revue d{\textquoteright}Ecologie (Terre et Vie)},
	volume = {71},
	year = {2016},
	abstract = {<p class="rtejustify">Morpho-sedimentology of coastal natural sites colonized by Sand Martin (Riparia riparia). {\textemdash} The Sand Martin or Bank Swallow Riparia riparia returns annually to a same site to establish a colony. These sites are natural or anthropogenic origin but are still subject to permanent changes. The species is characterized by its ability to dig tunnels in which it carries out its reproductive cycle. Several authors have attempted to identify the criteria used by the swallows to choose a favourable site to the installation of a colony. Among the many parameters that can help explain the location of colonies, morpho-sedimentary settings have been poorly documented. Among abiotic factors, the composition of the soil particles seems to play an important role in the depth of the tunnels which is directly proportional to the reproductive success. The aim of this article is to contribute to explore the morpho-sedimentary parameters of two colonies localized in coastal area. We investigated the supposed effect of morpho-sedimentary parameters on the presence and layout of tunnels, their depth and if the colonized sites have different characteristics from nearby favourable but not colonized sites. We took into consideration several morphological parameters of the colonies and sampled sediments, which were analysed and compared using statistical tests and linear regression. We show that, in the Bay of Mont Saint-Michel, Bank Swallows do not choose their nesting site depending on the nature of the sediment unlike what was proposed in a previous study on a continental site. For each site, we were only able to find tenuous differences between colonized and no colonized sites. The swallows have all chosen the same sedimentary strata regardless of the site. The choice of this stratum is linked mainly to the limitation of the risk of flooding but also to the fact that the uppermost stratum that supports vegetation is more difficult to be excavated due to the presence of roots and rhizomes. The characteristics of sedimentary material are however structuring in the depth of the tunnels.</p>
},
	author = {J{\'e}r{\^o}me Fournier and Alexandre Corbeau and Patrick Le Mao}
}
@article {4597,
	title = {Parental influence in relation to growth and survival in larval families of Doncella Pseudoplatystoma punctifer},
	journal = {Folia Amaz{\'o}nica},
	volume = {25},
	year = {2016},
	pages = {77-82},
	author = {Castro-Ruiz, D and Baras, Etienne and Fern{\'a}ndez, C and Sophie Qu{\'e}rouil and Chota-Macuyama, Werner and F. Duponchelle and Renno, J-F and Darias, Maria and Garc{\'\i}a-D{\'a}vila, C and Jesus Nu{\~n}ez-Rodriguez}
}
@article {4261,
	title = {Picophytoplankton contribution to Mytilus edulis growth in an intensive culture environment},
	journal = {Marine Biology},
	volume = {163},
	year = {2016},
	pages = {1{\textendash}15},
	issn = {1432-1793},
	doi = {10.1007/s00227-016-2845-7},
	url = {http://dx.doi.org/10.1007/s00227-016-2845-7},
	author = {R{\'e}mi Sonier and Filgueira, R. and Guyondet, T. and R{\'e}jean Tremblay and Fr{\'e}d{\'e}ric Olivier and Tarik Meziane and Starr, M. and LeBlanc, A. R. and Comeau, L. A.}
}
@article {7178,
	title = {Planktonic foraminiferal biogeography in the Indian sector of the Southern Ocean: Contribution from CPR data},
	journal = {Deep Sea Research Part I: Oceanographic Research Papers},
	volume = {110},
	year = {2016},
	month = {Jan-04-2016},
	pages = {75 - 89},
	issn = {09670637},
	doi = {10.1016/j.dsr.2015.12.014},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0967063716300280},
	author = {Meilland, Julie and Fabri-Ruiz, Salom{\'e} and Koubbi, Philippe and Monaco, Claire Lo and Cott{\'e}, C{\'e}dric and Hosie, Graham W. and Sanchez, Sophie and Howa, H{\'e}l{\`e}ne}
}
@article {6823,
	title = {Plasticity and acquisition of the thermal tolerance (upper thermal limit and heat shock response) in the intertidal species Palaemon elegans},
	journal = {Journal of Experimental Marine Biology and Ecology},
	volume = {484},
	year = {2016},
	pages = {39 - 45},
	abstract = {The marine species sensitivity to climate change will depend on the ways by which these species can adapt to thermal increase and heterogeneity. Here, we present evidence that the intertidal shrimp Palaemon elegans acclimates its thermal tolerance, in response to environmental water temperature, through a significant shift of its upper thermal limit with no concomittant acclimation of the heat shock response (hsp70 stress gene expression threshold). This species is less thermotolerant than its congener Palaemonetes varians, and would therefore potentially be more sensitive to an increase in environmental temperature, such as imposed by global warming. In P. elegans life cycle, physiological adjustments like the shift of the thermal limit and the acquisition of a significant HSR, occurred during the metamorphosis from larvae to post-larvae. This suggests that this step is a genetically-programmed milestone in the process of thermal tolerance acquisition.},
	keywords = {acclimation, Caridea, Development, heat stress, hsp70, thermal biology},
	issn = {0022-0981},
	doi = {https://doi.org/10.1016/j.jembe.2016.07.003},
	url = {http://www.sciencedirect.com/science/article/pii/S0022098116301125},
	author = {Juliette Ravaux and L{\'e}ger, Nelly and Rabet, Nicolas and Fourgous, Claire and Voland, Guillaume and Magali Zbinden and Bruce Shillito}
}
@article {4372,
	title = {Pollen limitation may be a common Allee effect in marine  hydrophilous plants: implications for decline and recovery  in seagrasses},
	journal = {Oecologia},
	year = {2016},
	pages = {1-15},
	doi = {10.1007/s00442-016-3665-7},
	author = {B.I. Van Tussenbroek and L.M. Soissons and T.J. Bouma and R. Asmus and I. Auby and F.G. Brun and P.G. Cardoso and Nicolas Desroy and J{\'e}r{\^o}me Fournier and F. Ganthy and J.M. Garmendia and Laurent Godet and T.F. Grilo and P. Kadel and B. Ondiviela and G. Peralta and M. Recio and M. Valle and T. Van der Heide and van Katwijk, M M}
}
@article {T{\'e}tard2016216,
	title = {Poor oxic conditions in a large estuary reduce connectivity from marine to freshwater habitats of a diadromous fish},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {169},
	year = {2016},
	note = {cited By 7},
	pages = {216-226},
	doi = {10.1016/j.ecss.2015.12.010},
	url = {https://www.sciencedirect.com/science/article/pii/S0272771415301670},
	author = {St{\'e}phane T{\'e}tard and Eric Feunteun and Bultel, E. and Gadais, R. and B{\'e}gout, M.-L. and Thomas Trancart and Lasne, E.}
}
@article {4448,
	title = {Unexpectedmovements of male Bluethroats Luscinia svecica namnetum during the breeding period},
	journal = {Alauda},
	volume = {84},
	year = {2016},
	pages = {195-202},
	abstract = {<p>During a radiotracking survey on 61 different males of Bluethroat Luscinia svecica namnetum from 2012 to 2015 in three different sites, we found that 8 males joined remote areas, at 300 to 900meters fromtheir regular territory and home range. Thesemovements occurred at dawn and dusk, but also at day. Such movements are not recorded in the literature and we propose four different hypotheses to explain them: the existence of {\textquotedblleft}hidden leks{\textquotedblright}, a male poly-territoriality, the look for food or for a shelter from predators.</p>
},
	author = {Cl{\'e}ment Harmange and Laurent Godet and Matthieu Marquet and Julie Dietrich and Sarah Monnet and Elisa Gr{\'e}goire and Marie-Christine Eybert and J{\'e}r{\^o}me Fournier}
}
@article {3747,
	title = {Acute combined pressure and temperature exposures on a shallow-water crustacean: novel insights into the stress response and high pressure neurological syndrome.},
	journal = {Comp Biochem Physiol A Mol Integr Physiol},
	volume = {181},
	year = {2015},
	month = {2015 Mar},
	pages = {9-17},
	abstract = {<p>Little is known about the ecological and physiological processes governing depth distribution limits in species. Temperature and hydrostatic pressure are considered to be two dominant factors. Research has shown that some marine ectotherms are shifting their bathymetric distributions in response to rapid anthropogenic ocean surface warming. Shallow-water species unable to undergo latitudinal range shifts may depend on bathymetric range shifts to seek refuge from warming surface waters. As a first step in constraining the molecular basis of pressure tolerance in shallow water crustaceans, we examined differential gene expression in response to acute pressure and temperature exposures in juveniles of the shallow-water shrimp Palaemonetes varians. Significant increases in the transcription of genes coding for an NMDA receptor-regulated protein, an ADP ribosylation factor, β-actin, two heat shock protein 70 kDa isoforms (HSP70), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) were found in response to elevated pressure. NMDA receptors have been implicated in pathways of excitotoxic damage to neurons and the onset of high pressure neurological syndrome (HPNS) in mammals. These data indicate that the sub-lethal effects of acute barotrauma are associated with transcriptional disturbances within the nervous tissue of crustaceans, and cellular macromolecular damage. Such transcriptional changes lead to the onset of symptoms similar to that described as HPNS in mammals, and may act as a limit to shallow water organisms{\textquoteright} prolonged survival at depth.</p>
},
	issn = {1531-4332},
	doi = {10.1016/j.cbpa.2014.10.028},
	author = {Morris, J P and Thatje, S and Juliette Ravaux and Bruce Shillito and Fernando, D and Hauton, C}
}
@article {Mennesson2015249,
	title = {Amphidromous life cycle of Eleotris fusca (Gobioidei: Eleotridae), a widespread species from the Indo-Pacific studied by otolith analyses},
	journal = {Cybium},
	volume = {39},
	number = {4},
	year = {2015},
	note = {cited By 5},
	pages = {249-260},
	doi = {10.26028/cybium/2015-394-002},
	url = {http://sfi-cybium.fr/fr/amphidromous-life-cycle-eleotris-fusca-gobioidei-eleotridae-widespread-species-indo-pacific-studied},
	author = {Marion Mennesson and H{\'e}l{\`e}ne Tabouret and P{\'e}cheyran, C. and Eric Feunteun and Philippe Keith}
}
@proceedings {3545,
	title = {Artificial reef: Multiscale monitoring of colonization and primary production - R{\'e}cif artificiel: mise en place d{\textquoteright}un suivi de la colonisation a plusieurs {\'e}chelles},
	volume = {1},
	year = {2015},
	month = {01/2015},
	pages = {103-110},
	edition = {M. Boutouil \& S. Leboulanger},
	address = {ESITC Caen},
	isbn = {978-2-95517664-0-5},
	author = {Pascal Claquin and Leroy, Fanny and Anne-Marie Rusig and Isabelle Mussio and Eric Feunteun and Foveau, Aur{\'e}lie and Jean-Claude Dauvin and R{\'e}gis Gallon and Lebrun, J-L and Lestarquit, Mabel and Francis Orvain and Anne-Sophie Martinez and Desoche, E and Napol{\'e}on, Camille and Roussel, D{\'e}borha and Boutoil, Mohamed}
}
@article {Miller201584,
	title = {Biodiversity and distribution of leptocephali west of the Mascarene Plateau in the southwestern Indian Ocean},
	journal = {Progress in Oceanography},
	volume = {137},
	year = {2015},
	note = {cited By 10},
	pages = {84-102},
	doi = {10.1016/j.pocean.2015.05.026},
	url = {https://www.sciencedirect.com/science/article/pii/S0079661115001317},
	author = {Miller, M.J. and Eric Feunteun and Aoyama, J. and Watanabe, S. and Kuroki, M. and Lecomte-Finiger, R. and Minegishi, Y. and Robinet, T. and R{\'e}veillac, E. and Gagnaire, P.-A. and Berrebi, P. and Tsukamoto, K. and Otake, T.}
}
@article {3325,
	title = {Biogenic reefs affect multiple components of intertidal soft-bottom benthic assemblages: the Lanice conchilega case study},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {152},
	year = {2015},
	month = {01/2015},
	pages = {44-55},
	abstract = {<p>Biogenic reefs composed of the tube-building polychaete Lanice conchilega are important from a conservation point of view because they noticeably increase the biodiversity in otherwise species poor<br />
environments. However, up to now, little or no attention has been paid to the intertidal epi- and hyperbenthic communities associated with the reefs. Therefore, this is the first study which focuses on<br />
the effect of L. conchilega reefs on the entire bentho-pelagic community at two different locations. Environmental variables were measured and macro-, epi- and hyperbenthic communities were sampled<br />
within a L. conchilega reef and a control area at two locations in France: the bay of the Mont Saint-Michel (BMSM) and Boulogne-sur-Mer (Boulogne). The effect of the reef presence on the benthic community<br />
was studied with a 3-factor (Reef, Location and Period) Permanova. In addition, the relationship between the benthic community and the environmental variables was investigated using Distance-based linear<br />
models (DistLM). Most collected organisms were sampled in the reef area (macrobenthos: 91\%, epibenthos: 81\% and hyperbenthos: 78.5\%) indicating that, independent of the location, the L. conchilega<br />
reefs positively affect all three associated benthic communities. However, the extent of the effect seems to be most pronounced for the macrobenthos and less distinct in case of the hyperbenthos. The macro-,<br />
and epibenthos are mainly structured by biotic variables (L. conchilega density and macrobenthic food availability respectively), while the hyperbenthos is rather structured by environmental variables. In<br />
general, L. conchilega reefs do not only affect abundances and diversity but they substantially steer the structure of the intertidal benthic sandy beach ecosystem.</p>
},
	keywords = {beaches, benthos, biogenic reefs, community composition, Lanice conchilega, tidal flats},
	doi = {doi:10.1016/j.ecss.2014.11.002},
	author = {De Smet, Bart and D{\textquoteright}Hondt, An Sophie and Pieterjan, Verhelst and J{\'e}r{\^o}me Fournier and Laurent Godet and Nicolas Desroy and Rabaut, Marijn and Magda, Vincx and Jan, Vanaverbeke}
}
@article {3838,
	title = {Bluethroats Luscinia svecica namnetum offset landscape constraints by expanding their home range},
	journal = {Journal of Ornithology},
	volume = {156},
	year = {2015},
	month = {06/2015},
	pages = {591-600},
	abstract = {<p>The highly fragmented landscape structures of coastal salinas are known to result in decreased terrestrial bird abundance, species richness and diversity but to promote original assemblages dominated by specialist species, such as the Bluethroat <em>Luscinia svecica</em> <em>namnetum</em>. This species is mainly found at the core of these salinas, where the landscape characteristics are a priori the most hostile for terrestrial birds. The aim of this study was to test whether individuals of a specialized species like the Bluethroat may offset such landscape constraints by expanding their home ranges. We therefore radio-tracked 21 males in 2013 and 2014 in the salinas of the Marais du Mes (Parc Naturel R{\'e}gional de Bri{\`e}re, Western France). The data of the 18 best-monitored males were used to carry out a hierarchical partitioning of variance to test the relative influence of landscape characteristics, individual characteristics\&nbsp;and distance to other males on their home-range sizes. We found that landscape characteristics were the factors that best explained home range sizes. Home-range sizes were significantly smaller in diversified landscapes composed of tidal creeks and salt-marsh patches and tended to be larger in landscapes dominated by the aquatic matrix consisting of water ponds. The results of this study demonstrate that although a few bird species are able to<br />
select a priori hostile landscapes, they can offset such constraints by expanding their home-range size.</p>
},
	author = {Laurent Godet and Matthieu Marquet and Marie-Christine Eybert and Elisa Gr{\'e}goire and Sarah Monnet and J{\'e}r{\^o}me Fournier}
}
@article {6815,
	title = {Calibration of seawater temperature and δ18Oseawater signals in Tridacna maxima{\textquoteright}s δ18Oshell record based on in situ data},
	journal = {Coral Reefs},
	volume = {34},
	year = {2015},
	month = {Jan-06-2015},
	pages = {437 - 450},
	issn = {0722-4028},
	doi = {10.1007/s00338-014-1245-z},
	url = {http://link.springer.com/10.1007/s00338-014-1245-z},
	author = {Duprey, N. and Claire E. Lazareth and Dupouy, C. and Butscher, J. and Farman, R. and Maes, C. and Cabioch, G.}
}
@proceedings {3547,
	title = {Colonisation {\`a} court terme par le benthos sur un {\'e}co-r{\'e}cif artificiel},
	volume = {1},
	year = {2015},
	month = {01/2015},
	pages = {119-126},
	edition = {M. Boutouil \& S. Leboulanger},
	address = {ESITC Caen},
	isbn = {978-2-95517664-0-5},
	author = {Foveau, Aur{\'e}lie and Jean-Claude Dauvin and Anne-Marie Rusig and Isabelle Mussio and Pascal Claquin}
}
@article {4823,
	title = {Comparative environmental performance of artisanal and commercial feed use in Peruvian freshwater aquaculture},
	journal = {Aquaculture},
	volume = {435},
	year = {2015},
	pages = {52-66},
	type = {Journal Article},
	issn = {0044-8486},
	doi = {http://dx.doi.org/10.1016/j.aquaculture.2014.08.001},
	url = {http://www.sciencedirect.com/science/article/pii/S0044848614003925},
	author = {Avad{\'\i}, Angel and Pelletier, Nathan and Aubin, Jo{\"e}l and Ralite, St{\'e}phane and Jesus Nu{\~n}ez-Rodriguez and Fr{\'e}on, Pierre}
}
@article {Miller201543,
	title = {Did a "perfect storm" of oceanic changes and continental anthropogenic impacts cause northern hemisphere anguillid recruitment reductions?},
	journal = {ICES Journal of Marine Science},
	volume = {73},
	number = {1},
	year = {2015},
	note = {cited By 24},
	pages = {43-56},
	doi = {10.1093/icesjms/fsv063},
	url = {https://academic.oup.com/icesjms/article/73/1/43/2457868},
	author = {Miller, M.J. and Eric Feunteun and Tsukamoto, K.}
}
@article {Martin2015991,
	title = {Dispersal capacities of anadromous Allis shad population inferred from a coupled genetic and otolith approach},
	journal = {Canadian Journal of Fisheries and Aquatic Sciences},
	volume = {72},
	number = {7},
	year = {2015},
	note = {cited By 13},
	pages = {991-1003},
	doi = {10.1139/cjfas-2014-0510},
	url = {https://www.nrcresearchpress.com/doi/abs/10.1139/cjfas-2014-0510?journalCode=cjfas},
	author = {Martin, J. and Rougemont, Q. and Drouineau, H. and Launey, S. and Jatteau, P. and Bareille, G. and Berail, S. and P{\'e}cheyran, C. and Eric Feunteun and Roques, S. and Clav{\'e}, D. and Nach{\'o}n, D.J. and Antunes, C. and Mota, M. and R{\'e}veillac, E. and Daverat, F.}
}
@article {3773,
	title = {The Dopaminergic Neurons Controlling Anterior Pituitary Functions: Anatomy and Ontogenesis in Zebrafish.},
	journal = {Endocrinology},
	year = {2015},
	month = {2015 May 12},
	pages = {en20151091},
	abstract = {<p>Dopaminergic (DA) neurons located in the preoptico-hypothalamic region of the brain exert a major neuroendocrine control on reproduction, growth and homeostasis by regulating the secretion of anterior pituitary (or adenohypophysis) hormones. Here, using a retrograde tract tracing experiment, we identified the neurons playing this role in the zebrafish. The DA cells projecting directly to the anterior pituitary are localized in the most anteroventral part of the preoptic area, and we named them preoptico-hypophyseal DA (POHDA) neurons. During development, these neurons do not appear before 72 hours post fertilization (hpf) and are the last dopaminergic cell group to differentiate. We found that the number of neurons in this cell population continues to increase life-long, proportionally to the growth of the fish. BrdU incorporation analysis suggested that this increase is due to continuous neurogenesis and not due to a phenotypic change in already existing neurons. Finally, expression profiles of several genes (foxg1a, dlx2a and nr4a2a/b) were different in the POHDA compared to the adjacent suprachiasmatic DA neurons, suggesting that POHDA neurons develop as a distinct DA cell population in the preoptic area. This study offers some insights into the regional identity of the preoptic area and provides the first bases for future functional genetic studies on the development of DA neurons controlling anterior pituitary functions.</p>
},
	issn = {1945-7170},
	doi = {10.1210/en.2015-1091},
	author = {Fontaine, Romain and Affaticati, Pierre and Bureau, Charlotte and Colin, Ingrid and Demarque, Micha{\"e}l and Sylvie Dufour and Vernier, Philippe and Yamamoto, Kei and Pasqualini, Catherine}
}
@article {Trancart2015168,
	title = {The effect of thermal shock during diel vertical migration on the energy required for oceanic migration of the European silver eel},
	journal = {Journal of Experimental Marine Biology and Ecology},
	volume = {463},
	year = {2015},
	note = {cited By 2},
	pages = {168-172},
	doi = {10.1016/j.jembe.2014.12.004},
	url = {https://www.sciencedirect.com/science/article/pii/S0022098114003190},
	author = {Thomas Trancart and Tudorache, C. and van den Thillart, G.E.E.J.M. and Anthony Acou and Alexandre Carpentier and Boinet, C. and Gouchet, G. and Eric Feunteun}
}
@article {3505,
	title = {Effects of subchronic exposure to glyphosate in juvenile oysters (Crassostrea gigas): From molecular to individual levels.},
	journal = {Mar Pollut Bull},
	year = {2015},
	month = {2014 Oct 30},
	abstract = {<p>Glyphosate-based herbicides are extensively used and can be measured in aquatic ecosystems, including coastal waters. The effect of glyphosate on non-target organisms is an issue of worldwide concern. The aim of this study was to investigate the effects of subchronic exposure to glyphosate in juvenile oysters, <em>Crassostrea gigas</em>. Yearling oysters were exposed to three concentrations of glyphosate (0.1, 1 and 100μgL(-1)) for 56days. Various endpoints were studied, from the individual level (e.g., gametogenesis and tissue alterations) to the molecular level (mRNA quantification), including biochemical endpoints such as glutathione-S-transferase (GST) and catalase activities and malondialdehyde content. No mortality and growth occurred during the experiment, and individual biomarkers revealed only slight effects. The levels of gene expression significantly increased in oysters exposed to the highest glyphosate concentration (GST and metallothioneins) or to all concentrations (multi-xenobiotic resistance). These results suggested an activation of defence mechanisms at the molecular level.</p>
},
	issn = {1879-3363},
	doi = {10.1016/j.marpolbul.2014.10.026},
	author = {Mottier, A and S{\'e}guin, Alexis and Devos, Alexandre and Le Pabic, C and Voiseux, C and Lebel, Jean-Marc and Antoine Serpentini and Fievet, B and Katherine Costil}
}
@article {3984,
	title = {Environmental microbiology as a mosaic of explored ecosystems and issues},
	journal = {Environmental Science and Pollution Research},
	volume = {22},
	year = {2015},
	pages = {13577-13598},
	keywords = {Critical zone, Environmental microbiology, Microbial ecology, Microbial ecosystems},
	issn = {0944-1344},
	doi = {10.1007/s11356-015-5164-5},
	url = {http://dx.doi.org/10.1007/s11356-015-5164-5},
	author = {Faure, Denis and Bonin, Patricia and Duran, Robert and The EC2CO consortium}
}
@article {3554,
	title = {Exploitation of intertidal feeding ressources by the red knot Calidris canutus under megatidal conditions (Bay of Saint-Brieuc, France)},
	journal = {Journal of Sea Research},
	volume = {96},
	year = {2015},
	pages = {23-30},
	author = {Anthony Sturbois and Alain Ponsero and Nicolas Desroy and Patrick Le Mao and J{\'e}r{\^o}me Fournier}
}
@article {3719,
	title = {Genetic variation among Corsican and continental populations of the Eurasian treecreeper (Aves: Certhia familiaris) reveals the existence of a palaeoendemic mitochondrial lineage},
	journal = {Biological Journal of the Linnean Society},
	volume = {115},
	year = {2015},
	month = {04/2015},
	pages = {134-153},
	abstract = {<p>In this study we investigated the phylogenetics of the Eurasian treecreeper (Certhia familiaris), a forest passerine with a wide Palaearctic range including Corsica, using three mitochondrial genes and three nuclear introns, and<br />
its phylogeographic history using the COI gene. Our phylogenetic results, including eight of the ten sub-species currently recognized, support the monophyly of C. familiaris with respect to its Indo-Asian sister species<br />
C. hodgsoni. C. familiaris comprises two lineages that diverged during the mid-Pleistocene (c. 1 Myr): one palaeoendemic lineage has an allopatric range nowadays restricted to the Corsica island and the Caucasus region<br />
whereas the second one, more recent and widespread, is distributed over most of Eurasia and in northern China. The most likely scenario that may explain such a pattern is a double colonization of the western Palaearctic from<br />
the eastern range of the species. During the middle Pleistocene period, a first lineage expanded its range up into Europe but did not persist through glacial cycles except in Corsica and the Caucasus region. Later, during the<br />
upper Pleistocene, a second lineage began to diversify around 0.09 Myr, spreading towards the western Palaearctic from a unique refuge likely located in the eastern Palaearctic [correction added on 6 March 2015 after first online<br />
publication: 0.9 Myr amended to 0.09 Myr]. Apart from C. f. corsa, our results do not suggest any distinct evolutionary history for other sub-species previously described on morphological grounds in Europe. Our study<br />
highlights the important conservation value of the Corsican treecreeper and emphasizes the major role of mature pine forests in the evolution of endemic bird taxa in Corsica.</p>
},
	author = {Jean-Marc Pons and Jean-Claude Thibault and J{\'e}r{\^o}me Fournier and Georges Olioso and Marko Rakovic and Guido Tellini Florenzano and J{\'e}r{\^o}me Fuchs}
}
@inbook {3861,
	title = {G{\'e}ographie et {\'e}cologie du paysage},
	booktitle = {Pour une g{\'e}ographie de la conservation: Biodiversit{\'e}s, natures et soci{\'e}t{\'e}s},
	year = {2015},
	publisher = {L{\textquoteright}Harmattan},
	organization = {L{\textquoteright}Harmattan},
	edition = {Rapha{\"e}l Math{\'e}vet, Laurent Godet},
	chapter = {11},
	address = {Paris},
	author = {J{\'e}r{\^o}me Fournier}
}
@article {4419,
	title = {GigaTON: an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas.},
	journal = {BMC Bioinformatics},
	volume = {16},
	year = {2015},
	month = {2015},
	pages = {401},
	abstract = {<p><strong>BACKGROUND: </strong>The Pacific oyster, Crassostrea gigas, is one of the most important aquaculture shellfish resources worldwide. Important efforts have been undertaken towards a better knowledge of its genome and transcriptome, which makes now C. gigas becoming a model organism among lophotrochozoans, the under-described sister clade of ecdysozoans within protostomes. These massive sequencing efforts offer the opportunity to assemble gene expression data and make such resource accessible and exploitable for the scientific community. Therefore, we undertook this assembly into an up-to-date publicly available transcriptome database: the GigaTON (Gigas TranscriptOme pipeliNe) database.</p>

<p><strong>DESCRIPTION: </strong>We assembled 2204 million sequences obtained from 114 publicly available RNA-seq libraries that were realized using all embryo-larval development stages, adult organs, different environmental stressors including heavy metals, temperature, salinity and exposure to air, which were mostly performed as part of the Crassostrea gigas genome project. This data was analyzed in silico and resulted into 56621 newly assembled contigs that were deposited into a publicly available database, the GigaTON database. This database also provides powerful and user-friendly request tools to browse and retrieve information about annotation, expression level, UTRs, splice and polymorphism, and gene ontology associated to all the contigs into each, and between all libraries.</p>

<p><strong>CONCLUSIONS: </strong>The GigaTON database provides a convenient, potent and versatile interface to browse, retrieve, confront and compare massive transcriptomic information in an extensive range of conditions, tissues and developmental stages in Crassostrea gigas. To our knowledge, the GigaTON database constitutes the most extensive transcriptomic database to date in marine invertebrates, thereby a new reference transcriptome in the oyster, a highly valuable resource to physiologists and evolutionary biologists.</p>
},
	keywords = {Animals, Base Sequence, Computational Biology, Crassostrea, Databases, Genetic, Gene Library, Gene Ontology, Genome, High-Throughput Nucleotide Sequencing, Molecular Sequence Data, Sequence Analysis, RNA, Software, Transcriptome},
	issn = {1471-2105},
	doi = {10.1186/s12859-015-0833-4},
	author = {Guillaume Rivi{\`e}re and Klopp, Christophe and Ibouniyamine, Nabihoudine and Huvet, Arnaud and Boudry, Pierre and Pascal Favrel}
}
@article {4198,
	title = {High clonality in Acropora palmata and Acropora cervicornis populations of Guadeloupe, French Lesser Antilles. },
	journal = {Marine and Freshwater Research},
	volume = {66},
	year = {2015},
	month = {2015},
	pages = {847-851},
	author = {Japaud, Aur{\'e}lien and Claude Bouchon and Manceau, Jean-Lou and Fauvelot, C{\'e}cile}
}
@article {4202,
	title = {Influence of dietary protein and lipid levels on growth performance and the incidence of cannibalism in Pseudoplatystoma punctifer~(Castelnau, 1855) larvae and early juveniles},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {74{\textendash}82},
	abstract = {<p>The aim of the study was to evaluate the influence of different dietary protein and lipid levels and their ratios on larval growth, survival and the incidence of cannibalism in Pseudoplatystoma punctifer. Larvae were raised in a recirculation system from 3 to 26\&nbsp;days post-fertilization (dpf) (2{\textendash}25\&nbsp;days post hatching, dph) at an initial density of 40 larvae L-1, 27.8\&nbsp;{\textpm}\&nbsp;0.65{\textdegree}C and 0L\&nbsp;:\&nbsp;24D photoperiod. Larvae were fed from 4 to 12 dpf with Artemia nauplii and weaned onto four different compound diets from 13 dpf within 3\&nbsp;days, then fed exclusively with these diets until 26 dpf. These diets contained 30\&nbsp;:\&nbsp;15, 30\&nbsp;:\&nbsp;10, 45\&nbsp;:\&nbsp;15 or 45\&nbsp;:\&nbsp;10 protein\&nbsp;:\&nbsp;lipid (P\&nbsp;:\&nbsp;L) (in \% of dry matter) levels. A control group was fed Artemia nauplii until 17 dpf and weaned thereafter with the 45P\&nbsp;:\&nbsp;10L compound diet. The experiment was carried out in triplicate. Results showed higher growth and survival rates and lower incidence of cannibalism in the group fed the 45P\&nbsp;:\&nbsp;15L diet than in the other treatments. Differences in larval survival and growth performance were associated with the higher protein and lipid content rather than the protein\&nbsp;:\&nbsp;lipid ratio of this diet. When comparing diets with the same protein level, the increase in dietary lipid led to an improvement in growth, suggesting that energy from lipids spares protein for growth in P.\&nbsp;punctifer fingerlings. An Artemia feeding period longer than 12 dpf did not improve larval growth or survival.</p>
},
	issn = {1439-0426},
	doi = {10.1111/jai.12978},
	url = {http://dx.doi.org/10.1111/jai.12978},
	author = {Darias, Maria and Castro-Ruiz, D and Estivals, G and Quazuguel, Patrick and Fern{\'a}ndez, C and Jesus Nu{\~n}ez-Rodriguez and Clota, F. and Gilles, S and Garc{\'\i}a-D{\'a}vila, C and Gisbert, E. and Cahu, Chantal L}
}
@article {4003,
	title = {Integrating Ecosystem Engineering and Food Web Ecology: Testing the Effect of Biogenic Reefs on the Food Web of a Soft-Bottom Intertidal Area},
	journal = {PLoS ONE},
	volume = {10},
	year = {2015},
	month = {10/2015},
	pages = {e0140857},
	abstract = {<p>The potential of ecosystem engineers to modify the structure and dynamics of food webs has recently been hypothesised from a conceptual point of view. Empirical data on the integration of ecosystem engineers and food webs is however largely lacking. This paper investigates the hypothesised link based on a field sampling approach of intertidal biogenic aggregations created by the ecosystem engineer Lanice conchilega (Polychaeta, Terebellidae). The aggregations are known to have a considerable impact on the physical and biogeochemical characteristics of their environment and subsequently on the abundance and biomass of primary food sources and the macrofaunal (i.e. the macro-, hyper- and epibenthos) community. Therefore, we hypothesise that L. conchilega aggregations affect the structure, stability and isotopic niche of the consumer assemblage of a soft-bottom intertidal food web. Primary food sources and the bentho-pelagic consumer assemblage of a L. conchilega aggregation and a control area were sampled on two soft-bottom intertidal areas along the French coast and analysed for their stable isotopes. Despite the structural impacts of the ecosystem engineer on the associated macrofaunal community, the presence of L. conchilega aggregations only has a minor effect on the food web structure of soft-bottom intertidal areas. The isotopic niche width of the consumer communities of the L. conchilega aggregations and control areas are highly similar, implying that consumer taxa do not shift their diet when feeding in a L. conchilega aggregation. Besides, species packing and hence trophic redundancy were not affected, pointing to an unaltered stability of the food web in the presence of L. conchilega.</p>
},
	author = {De Smet, Bart and J{\'e}r{\^o}me Fournier and De Troch, Marleen and Vincx, Magda and Vanaverbeke, Jan}
}
@inbook {4008,
	title = {Invert{\'e}br{\'e}s marins introduits dans le Golfe Normand-Breton depuis 1920},
	booktitle = {Atlas Permanent de la mer et du littoral},
	volume = {7},
	number = {51-53},
	year = {2015},
	publisher = {Universit{\'e} de Nantes},
	organization = {Universit{\'e} de Nantes},
	address = {Nantes},
	author = {Laurent Godet and Patrick Le Mao and Eric Thi{\'e}baut and Christian Reti{\`e}re and Louis Cabioc{\textquoteright}h and Franck Gentil and Nicolas Desroy and J{\'e}r{\^o}me Fournier}
}
@article {Boulenger2015427,
	title = {Length-weight relationships of the silver European eel, Anguilla anguilla (Linnaeus, 1758), across its geographic range},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	number = {2},
	year = {2015},
	note = {cited By 3},
	pages = {427-430},
	doi = {10.1111/jai.12685},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/jai.12685},
	author = {Boulenger, C. and Anthony Acou and Thomas Trancart and Crivelli, A.J. and Eric Feunteun}
}
@article {Laugier2015237,
	title = {Life history of the Small Sandeel, Ammodytes tobianus, inferred from otolith microchemistry. A methodological approach},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {165},
	year = {2015},
	note = {cited By 6},
	pages = {237-246},
	doi = {10.1016/j.ecss.2015.05.022},
	url = {https://www.sciencedirect.com/science/article/pii/S0272771415001717},
	author = {Laugier, F. and Eric Feunteun and P{\'e}cheyran, C. and Alexandre Carpentier}
}
@article {Caraguel2015435,
	title = {Mass marking of stocked European glass eels (Anguilla anguilla) with alizarin red S},
	journal = {Ecology of Freshwater Fish},
	volume = {24},
	number = {3},
	year = {2015},
	note = {cited By 11},
	pages = {435-442},
	doi = {10.1111/eff.12158},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12158},
	author = {Caraguel, J.-M. and Charrier, F. and Mazel, V. and Eric Feunteun}
}
@inbook {4009,
	title = {Milieux de vie des mammif{\`e}res de Bretagne},
	booktitle = {Atlas des mammif{\`e}res de Bretagne},
	year = {2015},
	pages = {16-29},
	publisher = {Locus Solus},
	organization = {Locus Solus},
	edition = {GMB},
	address = {Loperec},
	author = {J{\'e}r{\^o}me Fournier and Patrick Le Mao and Franck Simmonet}
}
@article {4232,
	title = {Modelling the effect of Cerastoderma edule bioturbation on microphytobenthos resuspension towards the planktonic food web of estuarine ecosystem},
	journal = {Ecological Modelling},
	volume = {316},
	year = {2015},
	month = {09/2015},
	pages = {155-167},
	abstract = {<p>Microphytobenthos (MPB) represents an important food source for primary consumers in estuarine ecosystems and the availability of MPB as food items results from complex physical, chemical, and biological interactions. In Baie des Veys (Lower Normandy, France), the common cockle Cerastoderma edule constitutes the major bioturbator in the ecosystem in terms of biomass. In this ecosystem, cockle bioturbation is a key process regulating the MPB erosion flux in the water column. This bivalve intensely modifies the top layer of the sediment by increasing the sediment erodibility and the fluxes of suspended chlorophyll a through the valve movements. More precisely, cockle bioturbation destabilizes the sediment surface by creating a biogenic layer that is easily eroded with tidal hydrodynamic forces. Associated MPB can then be exported to the water column to fuel higher trophic levels of the planktonic food web. The aim of this study was to develop a numerical model that reproduces the export of MPB associated to the biogenic layer erosion. Kinetics of suspended MPB, in response to increasing stress, were obtained from flume experiments in lab controlled conditions and in situ natural conditions. Following this, the suspended MPB were analyzed to respectively parameterize the model by (1) a calibration approach, and (2) an independent validation. The analysis has highlighted that the higher the biomass of cockles, the higher the MPB resuspension rates. Our model consistently reproduces the tendency encountered in laboratory analysis and with in situ natural conditions. During the validation, a small site-specific lack of adjustment was identified, but, among the macrozoobenthic community, the model can be significantly improved by considering the bioturbation activities of another ecosystem engineer, Pygospio elegans. This study thus provides reliable estimates of the daily food availability from benthic primary consumers in an estuarine system where cockles dominate the bioturbating assemblage. This model can be inserted in various model designs (0D, 1D-vertical or 3D).</p>
},
	author = {Rakotomalala, C and Karine Granger{\'e} and Martin Ubertini and For{\^e}t, M and Francis Orvain}
}
@article {3626,
	title = {Molecular characterization of peptide fractions of a Tilapia (Oreochromis niloticus) by-product hydrolysate and in vitro evaluation of antibacterial activity},
	journal = {Process Biochemistry},
	volume = {50},
	year = {2015},
	pages = {487-492},
	author = {Robert, Marie and C{\'e}line Zatylny-Gaudin and Fournier, Vincent and Corre, Erwan and Gildas Le Corguille and Bernay, Beno{\^\i}t and Jo{\"e}l Henry}
}
@article {3775,
	title = {Multi-causality and spatial non-stationarity in the determinants of groundwater crustacean diversity in Europe},
	journal = {Ecography},
	volume = {38},
	year = {2015},
	month = {05/2015},
	pages = {531{\textendash}540},
	type = {Research},
	author = {D. Eme and M. Zagmajster and C. Fiser and D. Galassi and P. Marmonier and F. Stoch and J. F. Cornu and Thierry Oberdorff and F. Malard}
}
@article {Josset2015150,
	title = {Pre-release processes influencing short-term mortality of glass eels in the French eel (Anguilla anguilla, Linnaeus 1758) stocking programme},
	journal = {ICES Journal of Marine Science},
	volume = {73},
	number = {1},
	year = {2015},
	note = {cited By 6},
	pages = {150-157},
	doi = {10.1093/icesjms/fsv074},
	url = {https://academic.oup.com/icesjms/article/73/1/150/2458188},
	author = {Josset, Q. and Thomas Trancart and Mazel, V. and Charrier, F. and Frott, L. and Anthony Acou and Eric Feunteun}
}
@article {4822,
	title = {Rearing of the Amazon catfish Pseudoplatystoma punctifer (Castelnau, 1855): weaning with dry and moist diets},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {83-87},
	type = {Journal Article},
	issn = {1439-0426},
	doi = {10.1111/jai.12979},
	url = {http://dx.doi.org/10.1111/jai.12979},
	author = {Fern{\'a}ndez-M{\'e}ndez, C. and Frank David and Darias, Maria and Castro-Ruiz, Diana and Jesus Nu{\~n}ez-Rodriguez}
}
@article {3385,
	title = {Relationships between biodiversity and the stability of marine ecosystems: Comparisons at a European scale using meta-analysis},
	journal = {Journal of Sea Research},
	volume = {98},
	year = {2015},
	pages = {5-14},
	abstract = {<p>Abstract The relationship between biodiversity and stability of marine benthic assemblages was investigated through meta-analyses using existing data sets (n\&nbsp;=\&nbsp;28) covering various spatial (m{\textendash}km) and temporal (1973{\textendash}2006; ranging from 5 to \&gt;\&nbsp;250\&nbsp;months) scales in different benthic habitats (emergent rock, rock pools and sedimentary habitats) over different European marine systems (North Atlantic and western Mediterranean). Stability was measured by a lower variability in time, and variability was estimated as temporal variance of species richness, total abundance (density or \% cover) and community structure (using Bray{\textendash}Curtis dissimilarities on species composition and abundance). Stability generally decreased with species richness. Temporal variability in species richness increased with the number of species at both quadrat (\&lt;\&nbsp;1\&nbsp;m2) and site (\&nbsp;\&nbsp;100\&nbsp;m2) scales, while no relationship was observed by multivariate analyses. Positive relationships were also observed at the scale of site between temporal variability in species richness and variability in community structure with evenness estimates. This implies that the relationship between species richness or evenness and species richness variability is slightly positive and depends on the scale of observation. Thus, species richness does not stabilize temporal fluctuations in species number, rather species rich assemblages are those most likely to undergo the largest fluctuations in species numbers and abundance from time to time. Changes within community assemblages in terms of structure are, however, generally independent of biodiversity. Except for sedimentary and rock pool habitats, no relationship was observed between temporal variation of total abundances and diversity at either scale. Overall, our results emphasize that the relation between species richness and species-level measures of temporal variability depends on scale of measurements, type of habitats and the marine system (North Atlantic and Mediterranean) considered.</p>
},
	keywords = {Benthic Marine Coastal Habitats, Biodiversity Ecosystem Functioning, Community Variability, Diversity{\textendash}Stability Relationships, Temporal Variability},
	issn = {1385-1101},
	doi = {http://dx.doi.org/10.1016/j.seares.2014.08.004},
	url = {http://www.sciencedirect.com/science/article/pii/S1385110114001609},
	author = {Cusson, Mathieu and Tasman P. Crowe and Rita Ara{\'u}jo and Francisco Arenas and Rebbecca Aspden and Fabio Bulleri and Dominique Davoult and Kirstie Dyson and Simonetta Fraschetti and Kristjan Herk{\"u}l and C{\'e}dric Hubas and Stuart Jenkins and Jonne Kotta and Patrik Kraufvelin and Migne, A and Markus Molis and Olwyen Mulholland and Laure M.-L.J. No{\"e}l and Paterson, David M and James Saunders and Paul J. Somerfield and Isabel Sousa-Pinto and Nicolas Spilmont and Antonio Terlizzi and Lisandro Benedetti-Cecchi}
}
@article {4362,
	title = {Revision of vernacular names for the freshwater fish of French Guiana.},
	journal = {Cybium},
	volume = {39},
	year = {2015},
	pages = {279-300},
	author = {Grenand, Pierre and Chapuis, Jean and Cognat Andr{\'e} and Cristinoi Antonia and Davy Damien and Grenand Fran{\c c}oise and Michel J{\'e}gu and Philippe Keith and Martin, Emmanuel and Nemo Fran{\c c}ois and Pagezy H{\'e}l{\`e}ne and Le Bail, Pierre-Yves}
}
@article {Feunteun201569,
	title = {Stable isotopic composition of anguilliform leptocephali and other food web components from west of the Mascarene Plateau},
	journal = {Progress in Oceanography},
	volume = {137},
	year = {2015},
	note = {cited By 14},
	pages = {69-83},
	doi = {10.1016/j.pocean.2015.05.024},
	url = {https://www.sciencedirect.com/science/article/pii/S0079661115001299},
	author = {Eric Feunteun and Miller, M.J. and Alexandre Carpentier and Aoyama, J. and Christine Dupuy and Kuroki, M. and Pagano, M. and R{\'e}veillac, E. and Sellos, D. and Watanabe, S. and Tsukamoto, K. and Otake, T.}
}
@article {3900,
	title = {Stock structure of the {English} {Channel} common cuttlefish {Sepia} officinalis ({Linnaeus}, 1758) during the reproduction period},
	journal = {Journal of the Marine Biological Association of the United Kingdom},
	year = {2015},
	pages = {1{\textendash}10},
	abstract = {<p>Within the English Channel, the common cuttlefish <em>Sepia officinalis</em> is a semelparous species for which a 2-year life cycle was<br />
exclusively described in the 1980s. In the 1990s, new research indicated that whilst a 2-year life cycle was still evident for<br />
females and the large majority of males, a small proportion of males were actually maturing at only 1 year of age. Since<br />
1980, the interest of French and UK fishers for this resource has increased and it is nowadays one of the most important<br />
demersal species of the area and is considered to be fully exploited. From the start of the 20th century, fishing effort<br />
and sea surface temperatures have increased in the English Channel and have probably impacted the life history traits of<br />
<em>S. officinalis</em>. A 2-year sampling programme was undertaken at French landing sites of the English Channel during the reproduction<br />
season in 2010 and 2011 to estimate if the proportion of 1-year-old mature animals has changed. Age determination<br />
was carried out by coupling polymodal decomposition and lipofuscin measurement. Size-at-maturity for each year and each<br />
sex was estimated by fitting a binomial error GLM. Results highlight that a variable percentage of males and females belonging<br />
to the first cohort are mature and that size-at-maturity was lower than that observed in the 1990s. Finally, different parameters,<br />
such as temperature and fishing pressure are explored to discuss changes in life history traits suggesting that cuttlefish<br />
could be an indicator of the temperature regime shift in the English Channel.</p>
},
	issn = {0025-3154, 1469-7769},
	doi = {10.1017/S0025315415001162},
	url = {http://www.journals.cambridge.org/abstract_S0025315415001162},
	author = {Gras, Michael and Safi, Georges and Lebredonchel, Hugo and Quinquis, J{\'e}r{\^o}me and Foucher, Eric and Koueta, Noussith{\'e} and Jean-Paul Robin}
}
@article {3828,
	title = {Transcriptome analysis reveals strong and complex antiviral response in a mollusc.},
	journal = {Fish Shellfish Immunol},
	year = {2015},
	month = {2015 May 22},
	abstract = {<p>Viruses are highly abundant in the oceans, and how filter-feeding molluscs without adaptive immunity defend themselves against viruses is not well understood. We studied the response of a mollusc Crassostrea gigas to Ostreid herpesvirus 1 {\textmu}Var (OsHV-1μVar) infections using transcriptome sequencing. OsHV-1μVar can replicate extremely rapidly after challenge of C.\&nbsp;gigas as evidenced by explosive viral transcription and DNA synthesis, which peaked at 24 and 48\&nbsp;h post-inoculation, respectively, accompanied by heavy oyster mortalities. At 120\&nbsp;h post-injection, however, viral gene transcription and DNA load, and oyster mortality, were greatly reduced indicating an end of active infections and effective control of viral replication in surviving oysters. Transcriptome analysis of the host revealed strong and complex responses involving the activation of all major innate immune pathways that are equipped with expanded and often novel receptors and adaptors. Novel Toll-like receptor (TLR) and MyD88-like genes lacking essential domains were highly up-regulated in the oyster, possibly interfering with TLR signal transduction. RIG-1/MDA5 receptors for viral RNA, interferon-regulatory factors, tissue necrosis factors and interleukin-17 were highly activated and likely central to the oyster{\textquoteright}s antiviral response. Genes related to anti-apoptosis, oxidation, RNA and protein destruction were also highly up-regulated, while genes related to anti-oxidation were down-regulated. The oxidative burst induced by the up-regulation of oxidases and severe down-regulation of anti-oxidant genes may be important for the destruction of viral components, but may also exacerbate oyster mortality. This study provides unprecedented insights into antiviral response in a mollusc. The mobilization and complex regulation of expanded innate immune-gene families highlights the oyster genome{\textquoteright}s adaptation to a virus-rich marine environment.</p>
},
	issn = {1095-9947},
	doi = {10.1016/j.fsi.2015.05.023},
	author = {He, Yan and Jouaux, Aude and Ford, Susan E and Christophe Lelong and Pascal Sourdaine and Mathieu, Michel and Guo, Ximing}
}
@article {4679,
	title = {Trophic opportunism of central Amazon floodplain fish},
	journal = {Freshwater Biology},
	volume = {60},
	year = {2015},
	pages = {1659{\textendash}1670},
	author = {Jean-Michel Mortillaro and Marc Pouilly and Wach, M and Carlos E.C. Freitas and Gwena{\"e}l Abril and Tarik Meziane}
}
@inbook {3555,
	title = {The "Turritella Layer": a potential proxy of a drastic Holocene environmental change on the North-East Atlantic coast},
	booktitle = {Sediment Fluxex in Coastal Areas},
	year = {2015},
	pages = {3-21},
	publisher = {Springer Science},
	organization = {Springer Science},
	edition = {Coastal Research Library},
	address = {Dordrecht},
	author = {Agn{\`e}s Baltzer and Zohra Mokeddem and Evelyne Goubert and Franck Lartaud and Nathalie Labourdette and J{\'e}r{\^o}me Fournier and Jean-Fran{\c c}ois Bourillet}
}
@article {3769,
	title = {What did we learn from PEGASEAS forum "Science and Governance of the Channel Marine Ecosystem"?},
	journal = {Mar Pollut Bull},
	volume = {93},
	year = {2015},
	month = {2015 Apr 15},
	pages = {1-4},
	abstract = {<p>As one of the busiest marine ecosystems in the world, the English Channel is subjected to strong pressures due to the human activities occurring within it. Effective governance is required to improve the combined management of different activities and so secure the benefits provided by the Channel ecosystem. In July 2014, a Cross-Channel Forum, entitled "Science and Governance of the Channel Marine Ecosystem", was held in Caen (France) as part of the INTERREG project "Promoting Effective Governance of the Channel Ecosystem" (PEGASEAS). Here we use outputs from the Forum as a framework for providing Channel-specific advice and recommendations on marine governance themes, including the identification of knowledge gaps, which may form the foundation of future projects for the next INTERREG project call (2015-2020).</p>
},
	issn = {1879-3363},
	doi = {10.1016/j.marpolbul.2015.02.021},
	author = {L Evariste and Claquin, Pascal and Jean-Paul Robin and Arnaud Auber and Abigail McQuatters-Gollop and Fletcher, Stephen and Glegg, Gillian and Jean-Claude Dauvin}
}
@article {3510,
	title = {Acute toxicity of 8 antidepressants: what are their modes of action?},
	journal = {Chemosphere},
	volume = {108},
	year = {2014},
	month = {2014 Aug},
	pages = {314-9},
	abstract = {<p>Currently, the hazard posed by pharmaceutical residues is a major concern of ecotoxicology. Most of the antidepressants belong to a family named the Cationic Amphipathic Drugs known to have specific interactions with cell membranes. The present study assessed the impact of eight antidepressants belonging to selective serotonin reuptake inhibitors or serotonin norepinephrine reuptake inhibitors by the combination of multi-approaches (in vivo, in vitro, in silico) and gives some insights on the mode of action for these molecules. Antidepressants were from the most to the least toxic compound for Daphnia magna: Sertraline (EC50=1.15 mg L(-1))\&gt;Clomipramine (2.74 mg L(-1))\&gt;Amitriptyline (4.82 mg L(-1))\&gt;Fluoxetine (5.91 mg L(-1))\&gt;Paroxetine (6.24 mg L(-1))\&gt;Mianserine (7.81 mg L(-1))\&gt;Citalopram (30.14 mg L(-1)) and Venlafaxine (141.28 mg L(-1)). These acute toxicities were found correlated to Log Kow coefficients (R=0.93, p\&lt;0.001) and to cytotoxicity assessed on abalone hemocytes through the neutral red uptake assay (R=0.96, p\&lt;0.001). If narcosis as mode of action is typically expected during acute ecotoxicity bioassays, we showed by molecular modeling that particular interactions can exist between antidepressants and phosphatidylcholine, a major component of cell membranes, leading to a more specific mode of action corresponding to a potential acidic hydrolysis of ester functions.</p>
},
	keywords = {Animals, Antidepressive Agents, Cell Survival, Cells, Cultured, Daphnia, Environmental Pollutants, Gastropoda, Hemocytes, Lysosomes, Models, Molecular, Phosphatidylcholines, Serotonin Uptake Inhibitors},
	issn = {1879-1298},
	doi = {10.1016/j.chemosphere.2014.01.057},
	author = {Minguez, Laetitia and Farcy, E and Ballandonne, C{\'e}line and Lepailleur, Alban and Antoine Serpentini and Jean-Marc Lebel and Bureau, Ronan and Halm-Lemeille, Marie-Pierre}
}
@article {Abril2014,
	title = {{Amazon River carbon dioxide outgassing fuelled by wetlands}},
	journal = {Nature},
	volume = {505},
	year = {2014},
	pages = {395-398},
	publisher = {Nature},
	doi = {10.1038/nature12797},
	author = {Gwena{\"e}l Abril and Martinez, Jean Michel and Luis Felipe Artigas and Moreira-Turcq, Patricia and Marc F Benedetti and Vidal, Luciana and Tarik Meziane and Kim, Jung-Hyun and Bernardes, Marcelo C and Savoye, Nicolas and Deborde, Jonathan and Lima Souza, Edivaldo and Alb{\'e}ric, Patrick and Fernandes, Marcelo and de Souza, Landim and Roland, Fabio}
}
@article {3264,
	title = {Cephalopods in neuroscience: regulations, research and the 3Rs.},
	journal = {Invert Neurosci},
	volume = {14},
	year = {2014},
	month = {2014 Mar},
	pages = {13-36},
	abstract = {<p>Cephalopods have been utilised in neuroscience research for more than 100\&nbsp;years particularly because of their phenotypic plasticity, complex and centralised nervous system, tractability for studies of learning and cellular mechanisms of memory (e.g. long-term potentiation) and anatomical features facilitating physiological studies (e.g. squid giant axon and synapse). On 1 January 2013, research using any of the about 700 extant species of "live cephalopods" became regulated within the European Union by Directive 2010/63/EU on the "Protection of Animals used for Scientific Purposes", giving cephalopods the same EU legal protection as previously afforded only to vertebrates. The Directive has a number of implications, particularly for neuroscience research. These include: (1) projects will need justification, authorisation from local competent authorities, and be subject to review including a harm-benefit assessment and adherence to the 3Rs principles (Replacement, Refinement and Reduction). (2) To support project evaluation and compliance with the new EU law, guidelines specific to cephalopods will need to be developed, covering capture, transport, handling, housing, care, maintenance, health monitoring, humane anaesthesia, analgesia and euthanasia. (3) Objective criteria need to be developed to identify signs of pain, suffering, distress and lasting harm particularly in the context of their induction by an experimental procedure. Despite diversity of views existing on some of these topics, this paper reviews the above topics and describes the approaches being taken by the cephalopod research community (represented by the authorship) to produce "guidelines" and the potential contribution of neuroscience research to cephalopod welfare.</p>
},
	keywords = {3Rs, Animal welfare, Cephalopods, Directive2010/63/EU, Neuroscience},
	issn = {1439-1104},
	doi = {10.1007/s10158-013-0165-x},
	author = {Fiorito, Graziano and Affuso, Andrea and Anderson, David B and Basil, Jennifer and Laure Bonnaud-Ponticelli and Botta, Giovanni and Cole, Alison and D{\textquoteright}Angelo, Livia and De Girolamo, Paolo and Dennison, Ngaire and Dickel, Ludovic and Di Cosmo, Anna and Di Cristo, Carlo and Gestal, Camino and Fonseca, Rute and Grasso, Frank and Kristiansen, Tore and Kuba, Michael and Maffucci, Fulvio and Manciocco, Arianna and Mark, Felix Christopher and Melillo, Daniela and Osorio, Daniel and Palumbo, Anna and Perkins, Kerry and Ponte, Giovanna and Raspa, Marcello and Shashar, Nadav and Smith, Jane and Smith, David and Sykes, Ant{\'o}nio and Villanueva, Roger and Tublitz, Nathan and Zullo, Letizia and Andrews, Paul}
}
@article {3428,
	title = {Comparison of the sensitivity of seven marine and freshwater bioassays as regards antidepressant toxicity assessment.},
	journal = {Ecotoxicology},
	volume = {23},
	year = {2014},
	month = {2014 Nov},
	pages = {1744-54},
	abstract = {<p>The hazards linked to pharmaceutical residues like antidepressants are currently a major concern of ecotoxicology because they may have adverse effects on non-target aquatic organisms. Our study assesses the ecotoxicity of three antidepressants (fluoxetine, sertraline and clomipramine) using a battery of marine and freshwater species representing different trophic levels, and compares the bioassay sensitivity levels. We selected the following bioassays: the algal growth inhibition test (Skeletonema marinoi and Pseudokirchneriella subcapitata), the microcrustacean immobilization test (Artemia salina and Daphnia magna), development and adult survival tests on Hydra attenuata, embryotoxicity and metamorphosis tests on Crassostrea gigas, and in vitro assays on primary cultures of Haliotis tuberculata hemocytes. The results showed high inter-species variability in EC50-values ranging from 43 to 15,600\&nbsp;{\textmu}g/L for fluoxetine, from 67 to 4,400\&nbsp;{\textmu}g/L for sertraline, and from 4.70\&nbsp;{\textmu}g/L to more than 100,000\&nbsp;{\textmu}g/L for clomipramine. Algae (S. marinoi and P. subcapitata) and the embryo-larval stages of the oyster C. gigas were the most sensitive taxa. This raises an issue due to their ecological and/or economic importance. The marine crustacean A. salina was the least sensitive species. This difference in sensitivity between bioassays highlights the importance of using a test battery.</p>
},
	issn = {1573-3017},
	doi = {10.1007/s10646-014-1339-y},
	author = {Minguez, Laetitia and Di Poi, C and Farcy, E and Ballandonne, C{\'e}line and Benchouala, Amira and Bojic, Cl{\'e}ment and Cossu-Leguille, Carole and Katherine Costil and Antoine Serpentini and Jean-Marc Lebel and Halm-Lemeille, Marie-Pierre}
}
@article {Quaintenne201487,
	title = {Contrasting Benthos Communities and Prey Selection by Red Knot Calidris canutus in Three Nearby Bays on the Channel Coast},
	journal = {Ardea},
	volume = {101},
	number = {2},
	year = {2014},
	note = {cited By 6},
	pages = {87-98},
	doi = {10.5253/078.101.0203},
	url = {https://bioone.org/journals/Ardea/volume-101/issue-2/078.101.0203/Contrasting-Benthos-Communities-and-Prey-Selection-by-Red-Knot-Calidris/10.5253/078.101.0203.full},
	author = {Gwena{\"e}l Quaintenne and Bocher, P. and Ponsero, A. and Caillot, E. and Eric Feunteun}
}
@article {3373,
	title = {Diversity of the RFamide peptide family in mollusks},
	journal = {frontiers in endocrinology},
	volume = {5},
	year = {2014},
	type = {review},
	abstract = {<p>Since the initial characterization of the cardioexcitatory peptide FMRFamide in the bivalve<br />
mollusk Macrocallista nimbosa, a great number of FMRFamide-like peptides (FLPs) have<br />
been identified in mollusks. FLPs were initially isolated and molecularly characterized in<br />
model mollusks using biochemical methods. The development of recombinant technologies<br />
and, more recently, of genomics has boosted knowledge on their diversity in various<br />
mollusk classes. Today, mollusk FLPs represent approximately 75 distinct RFamide peptides<br />
that appear to result from the expression of only five genes: the FMRFamide-related<br />
peptide gene, the LFRFamide gene, the luqin gene, the neuropeptide F gene, and the cholecystokinin/<br />
sulfakinin gene. FLPs display a complex spatiotemporal pattern of expression<br />
in the central and peripheral nervous system.Working as neurotransmitters, neuromodulators,<br />
or neurohormones, FLPs are involved in the control of a great variety of biological<br />
and physiological processes including cardiovascular regulation, osmoregulation, reproduction,<br />
digestion, and feeding behavior. From an evolutionary viewpoint, the major challenge<br />
will then logically concern the elucidation of the FLP repertoire of orphan mollusk classes<br />
and the way they are functionally related. In this respect, deciphering FLP signaling pathways<br />
by characterizing the specific receptors these peptides bind remains another exciting<br />
objective.</p>
},
	author = {C{\'e}line Zatylny-Gaudin and Pascal Favrel}
}
@article {3412,
	title = {Diversity structure of phytoplankton communities and primary productivity in a temperate epicontinental sea },
	journal = {Marine Ecology Progress Series},
	volume = {505},
	year = {2014},
	pages = {49-64},
	abstract = {The dynamics of the phytoplankton assemblage, the physical, chemical and biological
parameters, and primary productivity and production were monitored in the central English
Channel along a transect between Ouistreham and Portsmouth from January to December 2010.
The spatial patterns of the phytoplankton assemblage were controlled by the hydrological characteristics
of the water masses, and the annual structure of the phytoplankton assemblage was characteristic
of the central English Channel and was controlled by seasonality. The spring bloom was
dominated by a single species, Chaetoceros socialis, and associated with low microphytoplankton
evenness and Shannon-Wiener indices, whereas the evenness index was high from late spring to
winter and associated with the proliferation of pico- and nanophytoplankton cells. We identified 2
species responsible for harmful algal blooms, Phaeocystis globosa, which dominated the community
in the northern part of the Seine Bay in May, and Lepidodinium chlorophorum, which dominated
the community near the French coast in September. We examined the relationship between
microphytoplankton diversity and maximum primary production and productivity. We found a
negative parabolic relationship between the diversity indices (evenness and Shannon-Wiener)
and maximum primary production, and a positive parabolic relationship between the number of
taxa (richness) and maximum primary production. However, we found no relationship between
maximum productivity and the evenness or richness indices. High levels of productivity were
measured during the increasing abundance of pico and nanophytoplankton cells, highlighting the
importance of taking the dominant functional group into account, rather than the degree of diversity,
when explaining the level of productivity.},
	keywords = {English Channel, Phytoplankton diversity, primary production, Productivity},
	author = {Napol{\'e}on, C and Fiant, Liliane and Raimbault, V and Riou, P and Pascal Claquin}
}
@article {Personnic2014,
	title = {An ecosystem-based approach to assess the status of a mediterranean ecosystem, the Posidonia oceanica seagrass meadow},
	journal = {PLoS ONE},
	volume = {9},
	number = {6},
	year = {2014},
	note = {cited By 37},
	doi = {10.1371/journal.pone.0098994},
	url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0098994},
	author = {Personnic, S. and Boudouresque, C.F. and Astruch, P. and Ballesteros, E. and Blouet, S. and Bellan-Santini, D. and Bonhomme, P. and Thibault-Botha, D. and Eric Feunteun and Mireille Harmelin-Vivien and Pergent, G. and Pergent-Martini, C. and Pastor, J. and Poggiale, J.-C. and Renaud, F. and Thibaut, T. and Ruitton, S.}
}
@article {3509,
	title = {The effect of different polychlorinated biphenyls on two aquatic models, the green alga Pseudokirchneriella subcapitata and the haemocytes from the European abalone Haliotis tuberculata.},
	journal = {Chemosphere},
	volume = {110},
	year = {2014},
	month = {2014 Sep},
	pages = {120-8},
	abstract = {<p>The present study was conducted to determine the toxicity of different polychlorinated biphenyls (PCBs) on the green algae, <em>Pseudokirchneriella subcapitata</em> and the haemocytes from the European abalone, <em>Haliotis tuberculata</em>. Using the algal growth inhibition test, the green algae median Effective Concentration (EC50) values ranged from 0.34μM for PCB28 to more than 100μM for PCBs 101 and 153. Considering the MTT viability test, the abalone EC50 values ranged from 1.67μM for PCB153 to 89μM for PCB28. Our results in contrast to previous observation in vertebrates did not show significant differences between the dioxin like- and non dioxin like-PCBs toxicities regardless of the model used. However, our results demonstrated that the toxicities of PCBs were species dependent. For example, PCB28 was the most toxic compound for P. subcapitata whereas PCBs 1, 180 and 153 were less toxic for that species. On the contrary, PCB153 was reported as the most toxic for H. tuberculata haemocytes and PCB28 the least toxic. To investigate the mode of action of these compounds, we used an in silico method. Our results suggested that PCBs have a non-specific mode of action (e.g., narcosis) on green algae, and another mode of action, probably more specific than narcosis, was reported for PCBs on the abalone haemocytes.</p>
},
	keywords = {Animals, Chlorophyta, Environmental Pollutants, Gastropoda, Hemocytes, Polychlorinated Biphenyls, Tetrachlorodibenzodioxin},
	issn = {1879-1298},
	doi = {10.1016/j.chemosphere.2014.02.023},
	author = {Halm-Lemeille, Marie-Pierre and Abbaszadeh Fard, Elham and Latire, T and Ferard, Jean-Fran{\c c}ois and Katherine Costil and Jean-Marc Lebel and Bureau, Ronan and Antoine Serpentini}
}
@article {Walker20141,
	title = {EU eeliad: Anguillid eels: Conserving a global fishery},
	journal = {Ecology of Freshwater Fish},
	volume = {23},
	number = {1},
	year = {2014},
	note = {cited By 0},
	pages = {1},
	doi = {10.1111/eff.12104},
	url = {https://onlinelibrary.wiley.com/toc/16000633/23/1},
	author = {Walker, A.M. and Eric Feunteun and Metcalfe, J. and Poole, R. and Righton, D.}
}
@inbook {4149,
	title = {European Sea bass larval culture.},
	booktitle = {Biology of European Seabass.},
	year = {2014},
	pages = {162-206},
	publisher = {CRC Press},
	organization = {CRC Press},
	address = {Boca Raton},
	author = {Gisbert, E and Fern{\'a}ndez, Ignacio and Villamizar, N and Darias, Maria and Zambonino-Infante, J and Est{\'e}vez, A},
	editor = {S{\'a}nchez-V{\'a}zquez, F J and Mu{\~n}oz-Cueto, J A}
}
@article {Wahlberg201432,
	title = {Evidence of marine mammal predation of the European eel (Anguilla anguilla L.) on its marine migration},
	journal = {Deep-Sea Research Part I: Oceanographic Research Papers},
	volume = {86},
	year = {2014},
	note = {cited By 30},
	pages = {32-38},
	doi = {10.1016/j.dsr.2014.01.003},
	url = {https://www.sciencedirect.com/science/article/pii/S0967063714000077},
	author = {Wahlberg, M. and Westerberg, H. and Aarestrup, K. and Eric Feunteun and Gargan, P. and Righton, D.}
}
@article {Carpentier201486,
	title = {Feeding ecology of Liza spp. in a tidal flat: Evidence of the importance of primary production (biofilm) and associated meiofauna},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	note = {cited By 25},
	pages = {86-91},
	doi = {10.1016/j.seares.2013.10.007},
	url = {https://www.sciencedirect.com/science/article/pii/S1385110113002013},
	author = {Alexandre Carpentier and Como, S. and Christine Dupuy and Lefran{\c c}ois, C. and Eric Feunteun}
}
@article {3290,
	title = {Fish-AMAZBOL: a database on freshwater fishes of the Bolivian Amazon},
	journal = {Hyrobiologia},
	volume = {732},
	year = {2014},
	month = {07/2014},
	pages = {pp. 19-27},
	abstract = {The Bolivian part of the Amazon Basin contains a mega diverse and well-preserved fish fauna. Since the last decade, this fish fauna has received an increasing attention from scientists and the national authorities as fishes represent one of the most important sources of proteins for local human communities. However, this fish fauna still remains poorly documented. Here, we present a database for fishes from the Bolivian Amazon. To build the database, we conducted an extensive literature survey of native and non-native (exotic) fishes inhabiting all major sub-drainages of the Bolivian Amazon. The database, named Fish-AMAZBOL, contains species lists for 13 Amazonian hydrological units, covering 100\% of the Bolivian Amazon and approximately 65\% (722,137 km2) of the all territory. Fish-AMAZBOL includes 802 valid species, 12 of them being non-native, that have been checked for systematic reliability and consistency. To put this number in perspective, this represents around 14\% of the all Neotropical ichthyofauna and around 6\% of all strictly freshwater fishes inhabiting the planet. This database is currently the most comprehensive database of native and non-native fish species richness available so far for the Bolivian Amazon.},
	keywords = {Amazon River basin, Bolivia, Checklist, Freshwater fishes, Madera River, South America},
	doi = {10.1007/s10750-014-1841-5},
	url = {http://link.springer.com/article/10.1007/s10750-014-1841-5},
	author = {Carvajal-Vallejos, F M and R{\'e}my Bigorne and Zeballos Fernandez, Am{\'e}rica J. and Sarmiento, Jaime and Barrera Soraya and Yunoki, T and Marc Pouilly and Zubieta Jos{\'e} and De La Barra, Evans and Michel J{\'e}gu and Maldonado, Mabel and Van Damme, Paul and C{\'e}spedes, Ricardo and Thierry Oberdorff}
}
@article {3395,
	title = {Functional characterization of a short neuropeptide F-related receptor in a lophotrochozoan, the mollusk Crassostrea gigas.},
	journal = {J Exp Biol},
	volume = {217},
	year = {2014},
	month = {2014 Aug 15},
	pages = {2974-82},
	abstract = {<p>Members of the short neuropeptide F (sNPF) family of peptides and their cognate receptors play key roles in a variety of physiological processes in arthropods. In silico screening of GigasDatabase, a specific expressed sequence tag database from the Pacific oyster Crassostrea gigas, resulted in the identification of a receptor (Cg-sNPFR-like) phylogenetically closely related to sNPF receptors (sNPFRs) of insects. A reverse endocrinology approach was undertaken to identify the peptide ligand(s) of this orphan receptor. Though structurally distinct from insect sNPFs, three RFamide peptides derived from the same precursor, i.e. GSLFRFamide, SSLFRFamide and GALFRFamide, specifically activate the receptor in a dose-dependent manner, with respective EC50 values (half-maximal effective concentrations) of 1.1, 2.1 and 4.1 μmol l(-1). We found that both Cg-sNPFR-like receptor and LFRFamide encoding transcripts are expressed in the oyster central nervous system and in other tissues as well, albeit at lower levels. Mass spectrometry analysis confirmed the wide distribution of LFRFamide mature peptides in several central and peripheral tissues. The Cg-sNPFR-like receptor was more abundantly expressed in ganglia of females than of males, and upregulated in starved oysters. In the gonad area, highest receptor gene expression occurred at the start of gametogenesis, when storage activity is maximal. Our results suggest that signaling of LFRFamide peptides through the Cg-sNPFR-like receptor might play a role in the coordination of nutrition, energy storage and metabolism in C. gigas, possibly by promoting storage at the expense of reproduction.</p>
},
	issn = {1477-9145},
	doi = {10.1242/jeb.104067},
	author = {Bigot, Laetitia and Beets, Isabel and Marie-Pierre Dubos and Boudry, Pierre and Schoofs, Liliane and Pascal Favrel}
}
@article {3736,
	title = {G2Sd: a new R package for the statistical analysis of unconsolidated sediments},
	journal = {G{\'e}omorphologie: relief, processus, environnement},
	year = {2014},
	month = {06/2014},
	pages = {73-78},
	abstract = {<p>Modern depositional environment are mainly investigated in terms of internal sedimentary structures and associated grain-size characteristics. The latter are an intrinsic feature of sediments and hence essential for quantitative descriptions. It is therefore useful to have a tool available which allows direct and rapid calculation of numerous statistical parameters for a large number of samples. The G2Sd package gives full descriptive statistics and a physical description of sediments based on grain-size distributions derived from sieve analyses using a decadic log-transformation of the millimeter scale. Statistics are calculated either by using arithmetic and geometric methods of moments, or the graphic procedure of R.L. Folk and W.C. Ward (1957) to calculate mean grain-size, standard-deviation, skewness, and kurtosis based on the binary log-transformation of the mm scale. Numerical results are thus provided both in metric and phi units. The mode can be determined graphically by the user. Several percentiles and two common indices are calculated: D10, D50, D90, D90/D10, D90-D10, D75/D25, D75-D25, Trask Index (So) and Krumbein Index (Qd). A physical description of texture, sorting, skewness and kurtosis parameters is provided, based on the sediment nomenclature described in R.L. Folk (1966). The weight percentage of particles falling into each predefined size fraction is also included in the results. This package runs within the CRAN R-project.</p>
},
	author = {J{\'e}r{\^o}me Fournier and R{\'e}gis K. Gallon and Raphael Paris}
}
@article {3250,
	title = {Histological development of the digestive system of the Amazonian pimelodid catfish Pseudoplatystoma punctifer.},
	journal = {Animal},
	volume = {8},
	year = {2014},
	month = {2014 Nov},
	pages = {1765-76},
	abstract = {<p>The organogenesis of the digestive system was described in the Amazonian pimelodid catfish species Pseudoplatystoma punctifer from hatching (3.5 mm total length, TL) to 41 days post-fertilization (dpf) (58.1 mm TL) reared at 28{\textdegree}C. Newly hatched larvae showed a simple digestive tract, which appeared as a straight undifferentiated and unfolded tube lined by a single layer of columnar epithelial cells (future enterocytes). During the endogenous feeding period, comprised between 20 and 96 h post-fertilization (3.5 to 6.1 mm TL), the larval digestive system experienced a fast transformation with the almost complete development and differentiation of most of digestive organs (buccopahrynx, oesophagus, intestine, liver and exocrine pancreas). Yolk reserves were not completely depleted at the onset of exogenous feeding (4 dpf, 6.1 mm TL), and a period of mixed nutrition was observed up to 6 to 7 dpf (6.8 to 7.3 mm TL) when yolk was definitively exhausted. The stomach was the organ that latest achieved its complete differentiation, characterized by the development of abundant gastric glands in the fundic stomach between 10 and 15 dpf (10.9 to 15.8 mm TL) and the formation of the pyloric sphincter at the junction of the pyloric stomach and the anterior intestine at 15 dpf (15.8 mm TL). The above-mentioned morphological and histological features observed suggested the achievement of a digestive system characteristic of P. punctifer juveniles and adults. The ontogeny of the digestive system in P. punctifer followed the same general pattern as in most Siluriform species so far, although some species-specific differences in the timing of differentiation of several digestive structures were noted, which might be related to different reproductive guilds, egg and larval size or even different larval rearing practices. According to present findings on the histological development of the digestive system in P. punctifer, some recommendations regarding the rearing practices of this species are also provided in order to improve the actual larval rearing techniques of this fast-growing Neotropical catfish species.</p>
},
	issn = {1751-732X},
	doi = {10.1017/S1751731114001797},
	author = {Gisbert, E and Moreira, C and Castro-Ruiz, D and Ozt{\"u}rk, S and Fern{\'a}ndez, C and Gilles, S and Jesus Nu{\~n}ez-Rodriguez and Fabrice Duponchelle and Salvador Tello and Renno, J F and Garc{\'\i}a-D{\'a}vila, C and Darias, Maria}
}
@article {5051,
	title = {How does the resuspension of the biofilm alter the functioning of the benthos{\textendash}pelagos coupled food web of a bare mudflat in Marennes-Ol{\'e}ron Bay (NE Atlantic)?},
	journal = {Journal of sea research},
	volume = {92},
	year = {2014},
	pages = {144{\textendash}157},
	author = {Saint-B{\'e}at, B and Christine Dupuy and Agogue, Helene and Alexandre Carpentier and Chalumeau, J and Como, Serena and David, Val{\'e}rie and Margot de Crignis and Duch{\^e}ne, J C and Fontaine, C and others}
}
@article {Saint-B{\'e}at2014144,
	title = {How does the resuspension of the biofilm alter the functioning of the benthos-pelagos coupled food web of a bare mudflat in Marennes-Ol{\'e}ron Bay (NE Atlantic)?},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	note = {cited By 17},
	pages = {144-157},
	doi = {10.1016/j.seares.2014.02.003},
	url = {https://www.sciencedirect.com/science/article/pii/S138511011400029X},
	author = {Saint-B{\'e}at, B. and Christine Dupuy and Agogu{\'e}, H. and Alexandre Carpentier and Chalumeau, J. and Como, S. and David, V. and De Crignis, M. and Duch{\^e}ne, J.-C. and Fontaine, C. and Eric Feunteun and Katell Guizien and Hartmann, H. and Lavaud, J. and S{\'e}bastien Lefebvre and Lefran{\c c}ois, C. and Mallet, C. and Montani{\'e}, H. and Mouget, J.-L. and Francis Orvain and Ory, P. and Pascal, P.-Y. and Radenac, G. and Richard, P. and V{\'e}zina, A.F. and Nathalie Niquil}
}
@article {3598,
	title = {Interacting Regional Scale Regime Shifts for Biodiversity and Ecosystem Services},
	journal = {BioScience},
	volume = {64},
	year = {2014},
	month = {08/2014},
	pages = {665-679},
	doi = {doi: 10.1093/biosci/biu093},
	author = {P. Leadley and V. Proen{\c c}a and Juan F. Fern{\'a}ndez-Manjarr{\'e}s and H.M. Pereira and R. Alkemade and R. Biggs and E. Bruley and W. Cheung and D. Cooper and J. Figueiredo and E. Gilman and S. Gu{\'e}nette and G. Hurtt and C. Mbow and Thierry Oberdorff and C. Revenga and J. Scharlemann and R. Scholes and M. Stafford-Smith and R. Sumaila and M. Walpole}
}
@article {3413,
	title = {Interactive effects of irradiance and temperature on growth and domoic acid production of the toxic diatom Pseudo-nitzschia australis (Bacillariophyceae)},
	journal = {Harmful Algae},
	volume = {39},
	year = {2014},
	pages = {232-241},
	abstract = {The influence of temperature and light on the growth, physiology and domoic acid (DA) production of the pennate toxic diatom Pseudo-nitzschia australis isolated from the English Channel was studied in semicontinuous culture. The effects of eight irradiances (35{\textendash}400 mmol photons m2 s-1) and a temperature gradient (3.5{\textendash}25.5 8C) were investigated. The highest growth rates (0.47{\textendash}0.83 d-1) were observed between 18.6 and 13.5 8C, with an optimum irradiance for growth at 100 mmol photons m2 s-1. A decrease in the optimum growth temperature was observed with an increase in irradiance. Cell chlorophyll a content decreased at both low and high extreme temperatures and high irradiances. Stable and high values of Fv/Fm ratios below 21.8C highlight the great acclimation capacity of P. australis, which may explain its wide biogeographic distribution. The strain studied produced DA without nutrient limitation and during exponential growth although at lower levels than in other studies (0.15{\textendash} 2.0 pg DA cell-1). Results underline the importance of light{\textendash}temperature interactions for growth and DA production. Toxin production increased with increasing temperature and light, and DA production increased exponentially with the growth rate. These results show that DA is not only produced under nutrient stress or by unhealthy cells in P. australis. This study underlines the need to take the ability of P. australis to produce DA during the exponential growth into consideration to understand the link between toxin production and bloom dynamics. These results will not only help explore the processes involved, but also help parameterize future models of growth and DA production especially for P. australis.},
	keywords = {Domoic acid, Growth Irradiance, Pseudo-nitzschia australis, Temperature},
	author = {Thorel, Maxine and Juliette Fauchot and Morelle, J{\'e}r{\^o}me and Raimbault, V and Le Rou, B and Miossec, C and Kientz-Bouchard, V and Pascal Claquin}
}
@article {6832,
	title = {Irreplaceable area extends marine conservation hotspot off Tunisia: insights from GPS-tracking Scopoli{\textquoteright}s shearwaters from the largest seabird colony in the Mediterranean},
	journal = {Marine biology},
	volume = {161},
	year = {2014},
	pages = {2669{\textendash}2680},
	author = {Gr{\'e}millet, David and Clara P{\'e}ron and Pons, Jean-Baptiste and Ouni, Rhida and Authier, Matthieu and Th{\'e}venet, Matthieu and Fort, J{\'e}r{\^o}me}
}
@article {3394,
	title = {The Jumonji gene family in Crassostrea gigas suggests evolutionary conservation of Jmj-C histone demethylases orthologues in the oyster gametogenesis and development.},
	journal = {Gene},
	volume = {538},
	year = {2014},
	month = {2014 Mar 15},
	pages = {164-75},
	abstract = {<p>Jumonji (Jmj) proteins are histone demethylases, which control the identity of stem cells. Jmj genes were characterized from plants to mammals where they have been implicated in the epigenetic regulation of development. Despite the Pacific oyster Crassostrea gigas representing one of the most important aquaculture resources worldwide, the molecular mechanisms governing the embryogenesis and reproduction of this lophotrochozoan species remain poorly understood. However, annotations in the C. gigas EST library suggested the presence of putative Jumonji genes, raising the question of the conservation of this family of histone demethylases in the oyster. Using Primer walking, 5{\textquoteright}-RACE PCR and in silico analyses, we characterized nine Jumonji orthologues in the oyster, called Cg-Jmj, bearing conserved domains critical for putative histone demethylase activity. Phylogenic analyses revealed that oyster Jumonji cluster into two distinct groups: {\textquoteright}single-domain Jmj{\textquoteright} and {\textquoteright}multi-domain Jmj{\textquoteright}, and define 8 subgroups corresponding to each cognate orthologues in metazoans. RT-qPCR investigations showed specific regulations of Cg-Jmj mRNAs during the early development and along the reproduction cycle. Furthermore, in situ and in toto hybridizations indicate that oyster Jumonji genes are transcribed mostly within the gonad in adult oysters whereas they display a ubiquitous expression during embryonic and larval development. Our study demonstrates the presence of nine Jumonji orthologues in the oyster C. gigas. Their domain conservation and their expression profile suggest an implication during reproduction and development, questioning about the epigenetic regulation by histone methylation in lophotrochozoans.</p>
},
	keywords = {Animals, Base Sequence, Conserved Sequence, Crassostrea, Evolution, Molecular, Gametogenesis, Gene Expression Regulation, Developmental, Jumonji Domain-Containing Histone Demethylases, Molecular Sequence Data, Multigene Family, RNA, Messenger},
	issn = {1879-0038},
	doi = {10.1016/j.gene.2013.12.016},
	author = {Alexandre Fellous and Pascal Favrel and Guo, Ximing and Guillaume Rivi{\`e}re}
}
@book {Chemin{\'e}e2014161,
	title = {Management of infralittoral habitats: Towards a seascape scale approach},
	series = {Underwater Seascapes: From Geographical to Ecological Perspectives},
	volume = {9783319034409},
	year = {2014},
	note = {cited By 8},
	pages = {161-183},
	doi = {10.1007/978-3-319-03440-9-11},
	url = {https://link.springer.com/chapter/10.1007/978-3-319-03440-9_11},
	author = {Chemin{\'e}e, A. and Eric Feunteun and Clerici, S. and Cousin, B. and Patrice Francour}
}
@article {Bultel201423,
	title = {Migration behaviour of silver eels (Anguilla anguilla) in a large estuary of Western Europe inferred from acoustic telemetry},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {137},
	number = {1},
	year = {2014},
	note = {cited By 31},
	pages = {23-31},
	doi = {10.1016/j.ecss.2013.11.023},
	url = {https://www.sciencedirect.com/science/article/pii/S0272771413005155},
	author = {Bultel, E. and Lasne, E. and Anthony Acou and Guillaudeau, J. and Bertier, C. and Eric Feunteun}
}
@article {Trancart2014181,
	title = {Modeling marine shad distribution using data from French bycatch fishery surveys},
	journal = {Marine Ecology Progress Series},
	volume = {511},
	year = {2014},
	note = {cited By 6},
	pages = {181-192},
	doi = {10.3354/meps10907},
	url = {http://www.int-res.com/abstracts/meps/v511/p181-192/},
	author = {Thomas Trancart and Rochette, S. and Anthony Acou and Lasne, E. and Eric Feunteun}
}
@article {3397,
	title = {Neuropeptides encoded by the genomes of the Akoya pearl oyster Pinctata fucata and Pacific oyster Crassostrea gigas: a bioinformatic and peptidomic survey.},
	journal = {BMC Genomics},
	volume = {15},
	year = {2014},
	month = {2014},
	pages = {840},
	abstract = {<p><strong>BACKGROUND: </strong>Oysters impart significant socio-ecological benefits from primary production of food supply, to estuarine ecosystems via reduction of water column nutrients, plankton and seston biomass. Little though is known at the molecular level of what genes are responsible for how oysters reproduce, filter nutrients, survive stressful physiological events and form reef communities. Neuropeptides represent a diverse class of chemical messengers, instrumental in orchestrating these complex physiological events in other species.</p>

<p><strong>RESULTS: </strong>By a combination of in silico data mining and peptide analysis of ganglia, 74 putative neuropeptide genes were identified from genome and transcriptome databases of the Akoya pearl oyster, Pinctata fucata and the Pacific oyster, Crassostrea gigas, encoding precursors for over 300 predicted bioactive peptide products, including three newly identified neuropeptide precursors PFGx8amide, RxIamide and Wx3Yamide. Our findings also include a gene for the gonadotropin-releasing hormone (GnRH) and two egg-laying hormones (ELH) which were identified from both oysters. Multiple sequence alignments and phylogenetic analysis supports similar global organization of these mature peptides. Computer-based peptide modeling of the molecular tertiary structures of ELH highlights the structural homologies within ELH family, which may facilitate ELH activity leading to the release of gametes.</p>

<p><strong>CONCLUSION: </strong>Our analysis demonstrates that oysters possess conserved molluscan neuropeptide domains and overall precursor organization whilst highlighting many previously unrecognized bivalve idiosyncrasies. This genomic analysis provides a solid foundation from which further studies aimed at the functional characterization of these molluscan neuropeptides can be conducted to further stimulate advances in understanding the ecology and cultivation of oysters.</p>
},
	issn = {1471-2164},
	doi = {10.1186/1471-2164-15-840},
	author = {Stewart, Michael J and Pascal Favrel and Rotgans, Bronwyn A and Wang, Tianfang and Zhao, Min and Sohail, Manzar and O{\textquoteright}Connor, Wayne A and Elizur, Abigail and Jo{\"e}l Henry and Cummins, Scott F}
}
@inbook {3726,
	title = {New data on freshwater fish of New Caledonia},
	booktitle = {in Guilbert {\'E}., Robillard T., Jourdan H., \& Grandcolas P.(eds), Zoologia Neocaledonica 8. Biodiversity studies in New Caledonia. },
	number = {206},
	year = {2014},
	pages = {127-132 },
	publisher = {Mus{\'e}um national d{\textquoteright}Histoire naturelle},
	organization = {Mus{\'e}um national d{\textquoteright}Histoire naturelle},
	edition = {M{\'e}moires du Mus{\'e}um national d{\textquoteright}Histoire naturelle },
	address = {Paris },
	abstract = {<p>Since 1861, freshwater fishes have been studied at different periods in New Caledonia. The first list was published in 1915, but the<br />
major inventories were done between 1998 and 2003. These inventories allowed the discovery of many new species and the publication,<br />
in 2003, of the Atlas of Freshwater fish and crustaceans of New Caledonia, which listed 64 freshwater fish species. Between 2004<br />
and 2010, additional specific surveys were conducted by the MNHN and 9 species were added. Among them, 3 were new for science.<br />
Gobiidae family represents 30\% of the freshwater fishes of New Caledonia. This high percentage is explained by their particular life<br />
cycle adapted to insular systems.</p>
},
	author = {Philippe Keith and Clara Lord and Taillebois, Laura and Feutry, Pierre}
}
@article {3737,
	title = {Optimisation du marquage d{\textquoteright}oiseaux par la pose de bagues couleurs},
	journal = {Alauda},
	volume = {82},
	year = {2014},
	month = {06/2014},
	pages = {161-170},
	abstract = {<p>How to optimize the number of coloured rings on birds? Coloured rings are commonly used to individualize birds. A combination of colour rings enables to find the unique number registered on the metal ring. These colour rings allow to remotely control birds instead of capturing them again. These rings designed to minimize any potential perturbation for the individuals in their movements, but several papers showed considerable effects on the mate choice, the reproduction or the predation. It is often not necessary or not possible to capture hundreds or thousands of individuals to study the biology or the ecology of birds. To study a small bird population, it is possible to get a big number of colour ring combinations without putting a big number of rings. To put fewer rings is more comfortable for the bird and less time consuming during its manipulation. This article proposes solutions to ringers who wish to optimize the number of colour rings. The mathematical propositions show that it is better to systematically use the metal ring as being a part of the combination. It enables to increase very significantly the number of combinations while reducing the number of rings. To put only two colour rings in addition to the metal ring offers enough<br />
combinations for most of the field ornithological surveys.</p>
},
	author = {J{\'e}r{\^o}me Fournier and Lionel Moisan}
}
@article {3273,
	title = {Phytoplankton diversity and community composition along the estuarine gradient of a temperate macrotidal ecosystem: combined morphological and molecular approaches.},
	journal = {PLoS One},
	volume = {9},
	year = {2014},
	month = {2014},
	pages = {e94110},
	abstract = {<p>Microscopical and molecular analyses were used to investigate the diversity and spatial community structure of spring phytoplankton all along the estuarine gradient in a macrotidal ecosystem, the Baie des Veys (eastern English Channel). Taxa distribution at high tide in the water column appeared to be mainly driven by the tidal force which superimposed on the natural salinity gradient, resulting in a two-layer flow within the channel. Lowest taxa richness and abundance were found in the bay where Teleaulax-like cryptophytes dominated. A shift in species composition occurred towards the mouth of the river, with the diatom Asterionellopsis glacialis dramatically accumulating in the bottom waters of the upstream brackish reach. Small thalassiosiroid diatoms dominated the upper layer river community, where taxa richness was higher. Through the construction of partial 18S rDNA clone libraries, the microeukaryotic diversity was further explored for three samples selected along the surface salinity gradient (freshwater - brackish - marine). Clone libraries revealed a high diversity among heterotrophic and/or small-sized protists which were undetected by microscopy. Among them, a rich variety of Chrysophyceae and other lineages (e.g. novel marine stramenopiles) are reported here for the first time in this transition area. However, conventional microscopy remains more efficient in revealing the high diversity of phototrophic taxa, low in abundances but morphologically distinct, that is overlooked by the molecular approach. The differences between microscopical and molecular analyses and their limitations are discussed here, pointing out the complementarities of both approaches, for a thorough phytoplankton community description.</p>},
	issn = {1932-6203},
	doi = {10.1371/journal.pone.0094110},
	author = {Bazin, Pauline and Fabien Jouenne and Friedl, Thomas and Deton-Cabanillas, Anne-Flore and Bertrand Le Roy and Beno{\^\i}t V{\'e}ron}
}
@article {3420,
	title = {Sequential resuspension of biofilm components (viruses, prokaryotes and protists) as measured by erodimetry experiments in the Brouage mudflat (French Atlantic coast)},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	month = {09/2014},
	pages = {56-65},
	author = {Christine Dupuy and Clarisse Mallet and Katell Guizien and H{\'e}l{\`e}ne Montani{\'e} and Martine Br{\'e}ret and Fran{\c c}oise Mornet and Camille Fontaine and Caroline N{\'e}rot and Francis Orvain}
}
@article {3396,
	title = {Temperature influences histone methylation and mRNA expression of the Jmj-C histone-demethylase orthologues during the early development of the oyster Crassostrea gigas.},
	journal = {Mar Genomics},
	year = {2014},
	month = {2014 Sep 16},
	abstract = {<p>In many groups, epigenetic mechanisms influence developmental gene regulation under environmental inputs. The Pacific oyster Crassostrea gigas belongs to lophotrochozoans and its larval development is highly dependent on temperature, but the role of epigenetic mechanisms in this context is unknown despite high levels of the recently characterized Jumonji histone demethylase (JHDM) orthologues (Cg_Jumonji) suggesting a physiological relevance of histone methylation in the oyster development. Because in other species alterations of the histone methylation pattern have deleterious outcomes, we investigated the influence of temperature during the oyster larval life on histone methylation and JHDM expression. To shed light on this point, oyster embryonic and early larval development experiments were carried out at different temperatures (18{\textdegree}C, 25{\textdegree}C and 32{\textdegree}C). Histone methylation levels were investigated using fluorescent ELISA at 6 and 24h post-fertilization. When compared to the 25{\textdegree}C group, at 18{\textdegree}C H3K4, H3K9 and H3K27 residues were hypomethylated at 6h post fertilization (hpf) and hypermethylated at 24hpf. In contrast, at 32{\textdegree}C, 6hpf animals present a dramatic hypermethylation (ca. 4-fold) of all examined residues, which is minored but sustained at 24hpf. RT-qPCR investigations of the mRNA expression of the nine oyster JHDMs, showed gene- and stage-specific temperature sensitivities throughout the early life of oysters. This study provides evidence of the biological significance of histone methylation during development in a lophotrochozoan species. Our results also indicate that temperature influences histone methylation, possibly through the expression level of putative actors of its regulation, which might participate in developmental control. To our knowledge, this is the first report indicating a direct relationship between an epigenetic mark and an environmental parameter in marine molluscs. Such investigations could help better understand the molecular mechanisms of development and adaptation in lophotrochozoans.</p>
},
	issn = {1876-7478},
	doi = {10.1016/j.margen.2014.09.002},
	author = {Alexandre Fellous and Pascal Favrel and Guillaume Rivi{\`e}re}
}
@article {3371,
	title = {Transcriptomic and peptidomic analysis of protein hydrolysates from the white shrimp (L. vannamei).},
	journal = {J Biotechnol},
	volume = {186},
	year = {2014},
	month = {2014 Sep 30},
	pages = {30-7},
	abstract = {<p>An RNAseq approach associated to mass spectrometry was conducted to assess the composition, molecular mass distribution and primary sequence of hydrolytic peptides issued from hydrolysates of white shrimp (Litopenaeus vannamei) by-products. High performance size exclusion chromatography (HPSEC) analyses indicated that 69.2\% of the 214-nm-absorbing components had apparent molecular masses below 1000 Da, and 88.3\% below 2000 Da. OFFGEL-nLC-MALDI-TOF/TOF and nLC-ESI-MS/MS analyses led to the identification of 808 peptides based on the NCBI EST databank (161,397 entries) completed by the new L. vannamei databank (58,508 entries) that we created from the RNAs of tissues used for hydrolysate production. Whereas most of hydrolytic peptides have a MW below 2000 Da, preliminary investigations of antimicrobial properties revealed three antibacterial fractions that demonstrate functional activities. The abundance of small peptides as well as the biological activities detected could imply very interesting applications for shrimp hydrolysate in the field of aquaculture feeding.</p>},
	issn = {1873-4863},
	doi = {10.1016/j.jbiotec.2014.06.020},
	author = {Robert, Marie and C{\'e}line Zatylny-Gaudin and Fournier, Vincent and Corre, Erwan and Gildas Le Corguille and Bernay, Beno{\^\i}t and Jo{\"e}l Henry}
}
@article {3398,
	title = {Transcriptomic profiling of gametogenesis in triploid Pacific Oysters Crassostrea gigas: towards an understanding of partial sterility associated with triploidy.},
	journal = {PLoS One},
	volume = {9},
	year = {2014},
	month = {2014},
	pages = {e112094},
	abstract = {<p><strong>BACKGROUND: </strong>Triploidy can occur in many animal species but is often lethal. Among invertebrates, amphibians and fishes, triploids are viable although often sterile or infertile. Most triploids of the Pacific oyster Crassostrea gigas are almost sterile (named "3nβ") yet a low but significant proportion show an advanced gametogenesis (named "3nα"). These oysters thus constitute an interesting model to study the effect of triploidy on germ cell development. We used microarrays to compare the gonad transcriptomes of diploid 2n and the abovementioned triploid 3nβ and 3nα male and female oysters throughout gametogenesis.</p>

<p><strong>RESULTS: </strong>All triploids displayed an upregulation of genes related to DNA repair and apoptosis and a downregulation of genes associated with cell division. The comparison of 3nα and 3nβ transcriptomes with 2n revealed the likely involvement of a cell cycle checkpoint during mitosis in the successful but delayed development of gonads in 3nα individuals. In contrast, a disruption of sex differentiation mechanisms may explain the sterility of 3nβ individuals with 3nβ females expressing male-specific genes and 3nβ males expressing female-specific genes.</p>

<p><strong>CONCLUSIONS: </strong>The disruption of sex differentiation and mitosis may be responsible for the impaired gametogenesis of triploid Pacific oysters. The function of the numerous candidate genes identified in our study should now be studied in detail in order to elucidate their role in sex determination, mitosis/meiosis control, pachytene cell cycle checkpoint, and the control of DNA repair/apoptosis.</p>
},
	issn = {1932-6203},
	doi = {10.1371/journal.pone.0112094},
	author = {Dheilly, Nolwenn M and Jouaux, Aude and Boudry, Pierre and Pascal Favrel and Christophe Lelong}
}
@article {3662,
	title = {{Twenty years of observed and predicted changes in subtidal red seaweed assemblages along a biogeographical transition zone: inferring potential causes from environmental data}},
	journal = {Journal of Biogeography},
	volume = {41},
	year = {2014},
	pages = {2293{\textendash}2306},
	issn = {03050270},
	doi = {10.1111/jbi.12380},
	url = {http://doi.wiley.com/10.1111/jbi.12380},
	author = {R{\'e}gis Gallon and Robuchon, Marine and Leroy, Boris and Le Gall, L and Valero, Myriam and Eric Feunteun}
}
@article {3308,
	title = {A two-stage biomass model to assess the English Channel cuttlefish (<i>Sepia officinalis </i> L.) stock},
	journal = {{ICES} Journal of Marine Science: Journal du Conseil},
	volume = {05},
	year = {2014},
	month = {05/2014},
	type = {Original Article},
	author = {Gras, Michael and Roel, Beatriz A. and Coppin, Franck and Foucher, Eric and Jean-Paul Robin}
}
@book {Musard20141,
	title = {Underwater seascapes: From geographical to ecological perspectives},
	series = {Underwater Seascapes: From Geographical to Ecological Perspectives},
	volume = {9783319034409},
	year = {2014},
	note = {cited By 5},
	pages = {1-291},
	doi = {10.1007/978-3-319-03440-9},
	url = {https://www.springer.com/gp/book/9783319034393},
	author = {Musard, O. and Le D{\^u}-Blayo, L. and Patrice Francour and Beurier, J.-P. and Eric Feunteun and Talassinos, L.}
}
@article {6835,
	title = {Importance of coastal Marine Protected Areas for the conservation of pelagic seabirds: The case of Vulnerable yelkouan shearwaters in the Mediterranean Sea},
	journal = {Biological conservation},
	volume = {168},
	year = {2013},
	pages = {210{\textendash}221},
	author = {Clara P{\'e}ron and Gr{\'e}millet, David and Prudor, Aur{\'e}lien and Pettex, Emeline and Saraux, Claire and Soriano-Redondo, Andrea and Authier, Matthieu and Fort, J{\'e}r{\^o}me}
}
@article {8461,
	title = {Optimization of an {\textquotedblleft}in situ{\textquotedblright} subtidal rocky-shore sampling strategy for monitoring purposes},
	journal = {Marine Pollution Bulletin},
	volume = {74},
	year = {2013},
	month = {Jan-09-2013},
	pages = {253 - 263},
	issn = {0025326X},
	doi = {10.1016/j.marpolbul.2013.06.049},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0025326X1300355X},
	author = {Gallon, R.K. and Fr{\'e}d{\'e}ric Ysnel and Eric Feunteun}
}
@article {7339,
	title = {Ontogenetic change in the lipid and fatty acid composition of scleractinian coral larvae},
	journal = {Coral Reefs},
	volume = {31},
	year = {2012},
	month = {Jan-06-2012},
	pages = {613 - 619},
	issn = {0722-4028},
	doi = {10.1007/s00338-012-0874-3},
	url = {http://link.springer.com/10.1007/s00338-012-0874-3},
	author = {Figueiredo, J. and Baird, A. H. and Cohen, M. F. and Flot, J.-F. and Kamiki, T. and Tarik Meziane and Tsuchiya, M. and Yamasaki, H.}
}
