@article {10037,
	title = {Migratory Connectivity and Non-Breeding Habitat Segregation Across Biogeographical Scales in Closely Related Seabird Taxa},
	journal = {Diversity and Distributions},
	volume = {31},
	year = {2025},
	month = {Jan-03-2025},
	issn = {1366-9516},
	doi = {10.1111/ddi.v31.310.1111/ddi.70013},
	url = {https://onlinelibrary.wiley.com/toc/14724642/31/3https://onlinelibrary.wiley.com/doi/10.1111/ddi.70013https://onlinelibrary.wiley.com/doi/pdf/10.1111/ddi.70013},
	author = {Morera-Pujol, Virginia and Catry, Paulo and Magalh{\~a}es, Maria and Clara P{\'e}ron and Reyes-Gonz{\'a}lez, Jos{\'e} Manuel and Granadeiro, Jos{\'e} Pedro and Milit{\~a}o, Teresa and Dias, Maria P. and Oro, Daniel and Igual, Jos{\'e} Manuel and Dell{\textquoteright}Omo, Giacomo and M{\"u}ller, Martina and Paiva, Vitor H. and Metzger, Benjamin and Neves, Ver{\'o}nica and Navarro, Joan and Karris, Georgios and Xirouchakis, Stavros and Cecere, Jacopo G. and Zamora-Mar{\'\i}n, Jos{\'e} Manuel and Forero, Manuela G. and Af{\'a}n, Isabel and Ouni, Ridha and Romdhane, Mohamed Salah and De Felipe, Fernanda and Zajkov{\'a}, Zuzana and Cruz-Flores, Marta and Gr{\'e}millet, David and Gonz{\'a}lez-Sol{\'\i}s, Jacob and Ramos, Ra{\"u}l}
}
@article {9929,
	title = {Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems},
	journal = {Cell},
	volume = {187},
	year = {2024},
	month = {Jan-11-2024},
	pages = {6943 - 6965.e39},
	abstract = {Brown seaweeds are keystone species of coastal ecosystems, often forming extensive underwater forests, and are under considerable threat from climate change. In this study, analysis of multiple genomes has provided insights across the entire evolutionary history of this lineage, from initial emergence, through later diversification of the brown algal orders, down to microevolutionary events at the genus level. Emergence of the brown algal lineage was associated with a marked gain of new orthologous gene families, enhanced protein domain rearrangement, increased horizontal gene transfer events, and the acquisition of novel signaling molecules and key metabolic pathways, the latter notably related to biosynthesis of the alginate-based extracellular matrix, and halogen and phlorotannin biosynthesis. We show that brown algal genome diversification is tightly linked to phenotypic divergence, including changes in life cycle strategy and zoid flagellar structure. The study also showed that integration of large viral genomes has had a significant impact on brown algal genome content throughout the emergence of the lineage.},
	issn = {00928674},
	doi = {10.1016/j.cell.2024.10.049},
	url = {https://www.cell.com/cell/fulltext/S0092-8674(24)01272-8},
	author = {Denoeud, France and Godfroy, Olivier and Cruaud, Corinne and Heesch, Svenja and Nehr, Zofia and Tadrent, Nachida and Couloux, Arnaud and Brillet-Gu{\'e}guen, Loraine and Delage, Ludovic and Mckeown, Dean and Motomura, Taizo and Sussfeld, Duncan and Fan, Xiao and Maz{\'e}as, Lisa and Terrapon, Nicolas and Barrera-Redondo, Josu{\'e} and Petroll, Romy and Reynes, Lauric and Choi, Seok-Wan and Jo, Jihoon and Uthanumallian, Kavitha and Bogaert, Kenny and Duc, C{\'e}line and Ratchinski, P{\'e}lagie and Lipinska, Agnieszka and Noel, Benjamin and Murphy, Eleanor A. and Lohr, Martin and Khatei, Ananya and Hamon-Giraud, Pauline and Vieira, Christophe and Avia, Komlan and Akerfors, Svea Sanja and Akita, Shingo and Badis, Yacine and Barbeyron, Tristan and Belcour, Arnaud and Berrabah, Wahiba and Blanquart, Samuel and Bouguerba-Collin, Ahlem and Bringloe, Trevor and Cattolico, Rose Ann and Cormier, Alexandre and Cruz de Carvalho, Helena and Dallet, Romain and De Clerck, Olivier and Debit, Ahmed and Denis, Erwan and Destombe, Christophe and Dinatale, Erica and Dittami, Simon and Drula, Elodie and Faugeron, Sylvain and Got, Jeanne and Graf, Louis and Groisillier, Agn{\`e}s and Guillemin, Marie-Laure and Harms, Lars and Hatchett, William John and Henrissat, Bernard and Hoarau, Galice and Jollivet, Chlo{\'e} and Jueterbock, Alexander and Kayal, Ehsan and Knoll, Andrew H. and Kogame, Kazuhiro and Le Bars, Arthur and Leblanc, Catherine and Le Gall, Line and Ley, Ronja and Liu, Xi and LoDuca, Steven T. and Pascal Jean Lopez and Lopez, Philippe and Manirakiza, Eric and Massau, Karine and Mauger, St{\'e}phane and Mest, Laetitia and Michel, Gurvan and Monteiro, Catia and Nagasato, Chikako and N{\`e}gre, Delphine and Pelletier, Eric and Phillips, Naomi and Potin, Philippe and Rensing, Stefan A. and Rousselot, Ellyn and Rousvoal, Sylvie and Schroeder, Declan and Scornet, Delphine and Siegel, Anne and Tirichine, Leila and Tonon, Thierry and Valentin, Klaus and Verbruggen, Heroen and Weinberger, Florian and Wheeler, Glen and Kawai, Hiroshi and Peters, Akira F. and Yoon, Hwan Su and Herv{\'e}, C{\'e}cile and Ye, Naihao and Bapteste, Eric and Valero, Myriam and Markov, Gabriel V. and Corre, Erwan and Coelho, Susana M. and Wincker, Patrick and Aury, Jean-Marc and Cock, J. Mark}
}
@article {9891,
	title = {A global database of dissolved organic matter (DOM) concentration measurements in coastal waters (CoastDOM v1)},
	journal = {Earth System Science Data},
	volume = {16},
	year = {2024},
	month = {Jan-01-2024},
	pages = {1107 - 1119},
	doi = {10.5194/essd-16-1107-2024},
	url = {https://essd.copernicus.org/articles/16/1107/2024/https://essd.copernicus.org/articles/16/1107/2024/essd-16-1107-2024.pdf},
	author = {L{\o}nborg, Christian and Carreira, C{\'a}tia and Gwena{\"e}l Abril and Agust{\'\i}, Susana and Amaral, Valentina and Andersson, Agneta and Ar{\'\i}stegui, Javier and Bhadury, Punyasloke and Bif, Mariana B. and Borges, Alberto V. and Bouillon, Steven and Calleja, Maria Ll. and Cotovicz Jr., Luiz C. and Cozzi, Stefano and Doval, Maryl{\'o} and Duarte, Carlos M. and Eyre, Bradley and Fichot, C{\'e}dric G. and Garc{\'\i}a-Mart{\'\i}n, E. Elena and Garzon-Garcia, Alexandra and Giani, Michele and Gon{\c c}alves-Araujo, Rafael and Gruber, Renee and Hansell, Dennis A. and Hashihama, Fuminori and He, Ding and Holding, Johnna M. and Hunter, William R. and Ib{\'a}nhez, J. Severino P. and Ibello, Valeria and Jiang, Shan and Kim, Guebuem and Klun, Katja and Kowalczuk, Piotr and Kubo, Atsushi and Lee, Choon-Weng and Lopes, Cl{\'a}udia B. and Maggioni, Federica and Magni, Paolo and Marrase, Celia and Martin, Patrick and McCallister, S. Leigh and McCallum, Roisin and Medeiros, Patricia M. and Mor{\'a}n, Xos{\'e} Anxelu G. and Muller-Karger, Frank E. and Myers-Pigg, Allison and Norli, Marit and Oakes, Joanne M. and Osterholz, Helena and Park, Hyekyung and Lund Paulsen, Maria and Rosentreter, Judith A. and Ross, Jeff D. and Rueda-Roa, Digna and Santinelli, Chiara and Shen, Yuan and Teira, Eva and Tinta, Tinkara and Uher, Guenther and Wakita, Masahide and Ward, Nicholas and Watanabe, Kenta and Xin, Yu and Yamashita, Youhei and Yang, Liyang and Yeo, Jacob and Yuan, Huamao and Zheng, Qiang and {\'A}lvarez-Salgado, Xos{\'e} Ant{\'o}n}
}
@article {9915,
	title = {The identity of the iconic Japanese {\textquoteleft}Heike-gani{\textquoteright}, Heikeopsis japonica (von Siebold, 1824) (Crustacea, Decapoda, Brachyura, Dorippidae)},
	journal = {Zoosystema},
	volume = {46},
	year = {2024},
	month = {12/2024},
	pages = {775-811},
	abstract = {In the Dorippidae H. Milne Edwards, 1837, as revised by Holthuis \&amp; Manning (1990), ambulatory leg length, which is often utilised as a criterion for specific morphological differentiation, has proved to be a reliable character, even for the few cases where sexual dimorphism is observed in relative lengths. However, the discrepancies in the use of ambulatory leg length by these authors in the case of the iconic East Asian crab Heikeopsis japonica (von Siebold, 1824) is an issue that requires detailed study. The use of ambulatory leg length in dorippids has since been followed up by other researchers, but it is clear that there is a problem with this species. The taxonomy of the Heike-gani crab is therefore examined here in depth. In their revision, Holthuis \&amp; Manning (1990) did not discuss or resolve the problem that in H. japonica the first and second ambulatory legs are constantly and consistently long and narrow in adults of both sexes for most specimens in Japan, Taiwan and southern China, whereas the populations from the North China Sea have legs that are usually distinctly shorter and wider. Holthuis \&amp; Man- ning (1990) synonymised the long-legged Neodorippe (Neodorippe) japonica var. taiwanensis Ser{\`e}ne \&amp; Romimohtarto, 1969 with Heikea japonica (von Siebold, 1824) but, in addition, recognised a new very long-legged species from the Inland Sea in Japan, H. arachnoides (Manning \&amp; Holthuis, 1986). While the first and second ambulatory legs of H. arachnoides are relatively longer than in the typical H. japonica from the other parts of Japan, the difference is slight, and the holotype is not a fully adult specimen. Much of the literature on H. japonica from Japan, China, Hong Kong, Taiwan, and Korea does not discriminate between the leg lengths, and most authors follow the prognosis of Holthuis \&amp; Manning (1990) for the taxonomy. To better understand the problem with leg lengths in H. japonica, we examined a large series of specimens of these different leg-morphs from across its distribution, including the types of the various taxa. We confirm here that Neodorippe (Neodorippe) japonica var. taiwanensis is a junior synonym of H. japonica s. str. We also show that Heikea arachnoides Manning \&amp; Holthuis, 1986, based on not fully-grown individuals, is clearly a junior synonym of H. japonica s. str. as we demonstrate here that subadults and juveniles usually have proportionately longer and more slender first and second ambulatory legs. Notably, while all adult specimens from northern Chinese waters have shorter legs in contrast to those from other areas, this character is not unique to them: there were some specimens from Japan, Taiwan and southern China that possess relatively shorter legs as well, and others that belonged to the typical long-legged morph. Detailed morphological examination (including gonopods) of hundreds of specimens and analysis of sequence data for the mitochondrial 16S rRNA gene did not reveal any significant characters that could be used to separate the two morphs. This may be one of the very first cases of incipient speciation or cladogenesis taking place in a widely distributed species, with the northern Chinese population beginning to be isolated, but not long enough for other morphological and/or genetic characters to manifest themselves.},
	keywords = {16S rRNA, ambulatory leg length, East Asia, Heikea arachnoides, incipient speciation, long-legged morph, molecular analysis, Morphological variability, Neodorippe (Neodorippe) japonica var. taiwanensis, short-legged morph},
	doi = {10.5252/zoosystema2024v46a31},
	url = {http://zoosystema.com/46/31},
	author = {Guinot, Dani{\`e}le and Ng, Peter K L and Naruse, Tohru and de Mazancourt, Valentin}
}
@article {9457,
	title = {Intraspecific genetic lineages of a marine mussel show behavioural divergence when exposed to microplastic leachates},
	journal = {Environmental Pollution},
	volume = {340},
	year = {2024},
	month = {2024},
	issn = {ISSN 0269-7491},
	doi = {https://doi.org/10.1016/j.envpol.2023.122779},
	author = {Lorenzo Cozzolino and Nicastro, Katy R. and Hubbard, P C and Seuront, Laurent and Christopher D. McQuaid and Zardi, Gerardo I.}
}
@article {9889,
	title = {Phosphate buffering in mangrove sediment pore water under eutrophication and deforestation influences},
	journal = {Marine Pollution Bulletin},
	volume = {201},
	year = {2024},
	month = {Jan-04-2024},
	pages = {116130},
	issn = {0025326X},
	doi = {10.1016/j.marpolbul.2024.116130},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0025326X24001073},
	author = {Nascimento-Silva, Grazielle and Oliveira, Gabriela B. and Matos, Christiene R.L. and Metzger, Edouard and Sanders, Christian J. and Marotta, Humberto and D{\'\i}az, Rut and Gwena{\"e}l Abril and Machado, Wilson}
}
@article {9759,
	title = {The response of sea turtles to vocalizations opens new perspectives to reduce their bycatch},
	journal = {Scientific reports},
	volume = {14},
	year = {2024},
	month = {07/2024},
	abstract = {Incidental capture of non-target species poses a pervasive threat to many marine species, with sometimes devastating consequences for both fisheries and conservation efforts. Because of the well-known importance of vocalizations in cetaceans, acoustic deterrents have been extensively used for these species. In contrast, acoustic communication for sea turtles has been considered negligible, and this question has been largely unexplored. Addressing this challenge therefore requires a comprehensive understanding of sea turtles{\textquoteright} responses to sensory signals. In this study, we scrutinized the avenue of auditory cues, specifically the natural sounds produced by green turtles (Chelonia mydas) in Martinique, as a potential tool to reduce bycatch. We recorded 10 sounds produced by green turtles and identified those that appear to correspond to alerts, flight or social contact between individuals. Subsequently, these turtle sounds{\textemdash}as well synthetic and natural (earthquake) sounds{\textemdash}were presented to turtles in known foraging areas to assess the behavioral response of green turtles to these sounds. Our data highlighted that the playback of sounds produced by sea turtles was associated with alert or increased the vigilance of individuals. This therefore suggests novel opportunities for using sea turtle sounds to deter them from fishing gear or other potentially harmful areas, and highlights the potential of our research to improve sea turtles populations{\textquoteright} conservation.},
	keywords = {Acoustic, Bycatch, Conservation, Sea turtles, Vocalizations},
	doi = {10.1038/s41598-024-67501-z },
	url = {https://www.nature.com/articles/s41598-024-67501-z$\#$citeas},
	author = {Chevallier, Damien and Maucourt, L{\'e}o and Charrier, Isabelle and Lelong, Pierre and Le Gall, Yves and Menut, Eric and Wallace, Bryan and Delvenne, Cyrielle and Vincze, Orsolya and Jeantet, Lor{\`e}ne and Girondot, Marc and Martin, Jordan and Bourgeois, Ouv{\'e}a and Lepori, Muriel and Fournier, Pascal and Fournier-Chambrillon, Christine and R{\'e}gis, Sidney and Lecerf, Nicolas and Lefebvre, Fabien and Aubert, Nathalie and Arthus, Mosiah and Pujol, Matthieu and Nalovic, Michel Anthony and Moulanier, Nicolas and Burg, Marie-Cl{\'e}mence and Chevallier, Pascale and Chevallier, Tao and Landreau, Anthony and Meslier, St{\'e}phane and Larcher, Eug{\`e}ne and Le Maho, Yvon}
}
@article {9835,
	title = {Sargassum beaching on mangrove sediments shifts microbial and crab metabolisms and enhances blue carbon storage},
	journal = {Limnology and Oceanography},
	year = {2024},
	month = {Jan-10-2026},
	issn = {0024-3590},
	doi = {10.1002/lno.12725},
	url = {https://aslopubs.onlinelibrary.wiley.com/doi/10.1002/lno.12725},
	author = {Chynel, Mathias and Gwena{\"e}l Abril and Narayaninsamy, M{\'e}lissa and Deirmendjian, Loris and Gu{\'e}rin, Fr{\'e}d{\'e}ric and Dromard, Charlotte and Meziane, Tarik}
}
@article {9308,
	title = {Benchmarking global biodiversity of decapod crustaceans (Crustacea: Decapoda)},
	journal = {Journal of Crustacean Biology},
	volume = {43},
	year = {2023},
	month = {Aug-01-2023},
	issn = {0278-0372},
	doi = {10.1093/jcbiol/ruad042},
	url = {https://academic.oup.com/jcb/article/doi/10.1093/jcbiol/ruad042/7234762},
	author = {De Grave, Sammy and Decock, Wim and Dekeyzer, Stefanie and Davie, Peter J F and Fransen, Charles H J M and Boyko, Christopher B and Poore, Gary C B and Macpherson, Enrique and Ahyong, Shane T and Crandall, Keith A and de Mazancourt, Valentin and Osawa, Masayuki and Chan, Tin-Yam and Ng, Peter K L and Lemaitre, Rafael and van der Meij, Sancia E T and Santos, Sandro}
}
@article {9188,
	title = {Current knowledge of New Caledonian marine and freshwater ichthyofauna, SW Pacific Ocean: Diversity, exploitation, threats and management actions.},
	journal = {Cybium},
	volume = {47},
	year = {2023},
	month = {03/2023},
	pages = {17-30},
	doi = {https://doi.org/10.26028/cybium/2023-471-002},
	author = {Yves Letourneur and Charpin Nicolas and Marion Mennesson and Philippe Keith}
}
@article {9192,
	title = {Data quality control considerations in multivariate environmental monitoring: experience of the French coastal network SOMLIT},
	journal = {Frontiers in Marine Science},
	volume = {10},
	year = {2023},
	month = {Feb-04-2025},
	doi = {doi.org/10.3389/fmars.2023.1135446},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2023.1135446/full},
	author = {Breton, Elsa and Savoye, Nicolas and Rimmelin-Maury, Peggy and Sautour, Benoit and Goberville, Eric and Lheureux, Arnaud and Cariou, Thierry and Ferreira, Sophie and Agogue, Helene and Alliouane, Samir and Aubert, Fabien and Aubin, S{\'e}bastien and Berthebaud, Eric and Blayac, Hadrien and Blondel, Lucie and Boulart, C{\'e}dric and Bozec, Yann and Bureau, Sarah and Caillo, Arnaud and Cauvin, Arnaud and Cazes, Jean-Baptiste and Chasselin, L{\'e}o and Pascal Claquin and Conan, Pascal and Cordier, Marie-Ange and Costes, Laurence and Crec{\textquoteright}hriou, Romain and Crispi, Olivier and Crouvoisier, Muriel and David, Val{\'e}rie and Del Amo, Yolanda and De Lary, Hortense and Delebecq, Gaspard and Devesa, J{\'e}r{\'e}my and Domeau, Aur{\'e}lien and Durozier, Maria and Emery, Claire and Eric Feunteun and Juliette Fauchot and Gentilhomme, Val{\'e}rie and Geslin, Sandrine and Giraud, M{\'e}lanie and Granger{\'e}, Karine and Gr{\'e}gori, Gerald and Grossteffan, Emilie and Gueux, Aurore and Guillaudeau, Julien and Guillou, Ga{\"e}l and Harrewyn, Manon and Jolly, Orianne and Jude-Lemeilleur, Florence and Labatut, Paul and Labourdette, Nathalie and Lachauss{\'e}e, Nicolas and Lafont, Michel and Lagadec, V{\'e}ronique and Lambert, Christophe and Lamoureux, Jezebel and Lanceleur, Laurent and Lebreton, Beno{\^\i}t and Lecuyer, Eric and Lemeille, David and Leredde, Yann and Leroux, C{\'e}dric and Leynaert, Aude and L{\textquoteright}Helguen, St{\'e}phane and Li{\'e}nart, Camilla and Mac{\'e}, Eric and Maria, Eric and Marie, Barbara and Marie, Dominique and Mas, S{\'e}bastien and Mendes, Fabrice and Mornet, Line and Mostajir, Behzad and Mousseau, Laure and Nowaczyk, Antoine and Nunige, Sandra and Parra, Ren{\'e} and Paulin, Thomas and Pecqueur, David and Petit, Franck and Pineau, Philippe and Raimbault, Patrick and Rigaut-Jalabert, Fabienne and Salmeron, Christophe and Salter, Ian and Sauriau, Pierre-Guy and Seuront, Laurent and Sultan, Emmanuelle and Vald{\`e}s, R{\'e}mi and Vantrepotte, Vincent and Vidussi, Francesca and Voron, Florian and Vuillemin, Renaud and Zudaire, Laurent. and Garcia, Nicole}
}
@article {9466,
	title = {An ecosystem-wide approach for assessing the spatialized cumulative effects of local and global changes on coastal ecosystem functioningAbstract},
	journal = {ICES Journal of Marine Science},
	volume = {80},
	year = {2023},
	month = {May-03-2025},
	pages = {1129 - 1142},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsad043},
	url = {https://academic.oup.com/icesjms/article/80/4/1129/7092991},
	author = {Nogues, Quentin and Bourdaud, Pierre and Araignous, Emma and Halouani, Ghassen and Ben~Rais~Lasram, Frida and Dauvin, Jean-Claude and Le~Loc{\textquoteright}h, Fran{\c c}ois and Nathalie Niquil},
	editor = {Coll, Marta}
}
@article {9512,
	title = {Efects on Growth of Juvenile Abalones Haliotis tuberculata Under  Chronic Exposition to Metals Released from the Dissolution  of an Aluminium-Based Galvanic Anode},
	journal = {Archives of Environmental Contamination and Toxicology},
	volume = {84},
	year = {2023},
	pages = {32-44},
	abstract = {In the marine environment, the galvanic anode cathodic protection system (GACP) undergoes oxidation and releases metals in the forms of ions or oxy-hydroxides into the environment. The objective of the present study was to investigate the toxicity of a cocktail of metals released from the dissolution of an aluminium-based galvanic anode (~95\% Al,~5\% Zn) on the abalone Haliotis tuberculata. Juveniles were exposed for 16\&nbsp;weeks (i.e. 12\&nbsp;weeks of exposure and 4\&nbsp;weeks of decontamination phase) and their growth, intake rate, conversion rate and metallic concentrations were monitored. A total of 6 conditions were tested: a control, 4 concentrations based on Al and a trophic control. Results showed that the mortality reached 57\% for individuals exposed to 1125\&nbsp;{\textmu}g L-1 of Al, and the abalone growth signifcantly decreased for an Al concentration greater than 495\&nbsp;{\textmu}g L-1. At the highest exposure concentration, intake rate measurements revealed that the appetite of abalones was afected, supported by the large increase in the conversion rate which was indicative of a poor feed efciency. The monitoring of metallic concentrations showed that H. tuberculata strongly bioconcentrated Al relative to zinc. The diet did not appear to be the primary pathway for metal entry. Concentrations that signifcantly impacted abalone growth and survival during the experiment were higher than those found in natural environment, but the bioconcentration of Al into the tissues of a primary consumer such as abalone may be a potential pathway for Al to enter food webs.},
	author = {Nivelais, L and Levallois, A and Basuyaux, O and Costil, K and Lebel, J M and Larsonneur, S and Guichard, G and Serpentini, A. and Caplat, C}
}
@article {9458,
	title = {The effect of interspecific and intraspecific diversity on microplastic ingestion in two co-occurring mussel species in South Africa},
	journal = {Marine Pollution Bulletin},
	volume = {196},
	year = {2023},
	month = {2023},
	doi = {https://doi.org/10.1016/j.marpolbul.2023.115649},
	author = {Lorenzo Cozzolino and Nicastro, Katy R. and S{\'e}bastien Lefebvre and Luana Corona and Pierre William Froneman and Christopher D. McQuaid and Zardi, Gerardo I.}
}
@article {9327,
	title = {Effects on Growth of Juvenile Abalones Haliotis tuberculata Under Chronic Exposition to Metals Released from the Dissolution of an Aluminium-Based Galvanic Anode},
	journal = {Archives of Environmental Contamination and Toxicology},
	volume = {84},
	year = {2023},
	month = {Jan-01-2023},
	pages = {32 - 44},
	abstract = {In the marine environment, the galvanic anode cathodic protection system (GACP) undergoes oxidation and releases metals in the forms of ions or oxy-hydroxides into the environment. The objective of the present study was to investigate the toxicity of a cocktail of metals released from the dissolution of an aluminium-based galvanic anode (~95\% Al,~5\% Zn) on the abalone Haliotis tuberculata. Juveniles were exposed for 16\&nbsp;weeks (i.e. 12\&nbsp;weeks of exposure and 4\&nbsp;weeks of decontamination phase) and their growth, intake rate, conversion rate and metallic concentrations were monitored. A total of 6 conditions were tested: a control, 4 concentrations based on Al and a trophic control. Results showed that the mortality reached 57\% for individuals exposed to 1125\&nbsp;{\textmu}g L-1 of Al, and the abalone growth signifcantly decreased for an Al concentration greater than 495\&nbsp;{\textmu}g L-1. At the highest exposure concentration, intake rate measurements revealed that the appetite of abalones was afected, supported by the large increase in the conversion rate which was indicative of a poor feed efciency. The monitoring of metallic concentrations showed that H. tuberculata strongly bioconcentrated Al relative to zinc. The diet did not appear to be the primary pathway for metal entry. Concentrations that signifcantly impacted abalone growth and survival during the experiment were higher than those found in natural environment, but the bioconcentration of Al into the tissues of a primary consumer such as abalone may be a potential pathway for Al to enter food webs.},
	issn = {0090-4341},
	doi = {10.1007/s00244-022-00975-y},
	url = {https://link.springer.com/10.1007/s00244-022-00975-y},
	author = {Nivelais, Laureen and Levallois, Alexandre and Basuyaux, Olivier and Katherine Costil and Lebel, Jean-Marc and Larsonneur, Solveig and Guichard, Gwendoline and Serpentini, Antoine and Caplat, Christelle}
}
@article {9459,
	title = {Euendolithic Infestation of Mussel Shells Indirectly Improves the Thermal Buffering Offered by Mussel Beds to Associated Molluscs, but One Size Does Not Fit All},
	journal = {Diversity},
	volume = {15},
	year = {2023},
	month = {2023},
	doi = {https://doi.org/10.3390/d15020239},
	author = {Dievart, Alexia M. and Christopher D. McQuaid and Zardi, Gerardo I. and Nicastro, Katy R. and Pierre William Froneman}
}
@article {9361,
	title = {The goby fish Sicydium spp. as valuable sentinel species towards the chemical stress in freshwater bodies of West Indies},
	journal = {Aquatic Toxicology},
	volume = {261},
	year = {2023},
	month = {Jan-08-2023},
	pages = {106623},
	abstract = {Implementation of the European Water Framework Directive in tropical areas such as the French West Indies (FWI) requires to select relevant aquatic sentinel species for investigating the ecological status of surface waters. The present work aimed to study the biological response of the widespread fish Sicydium spp. towards river chemical quality in Guadeloupe island through a set of proper biomarkers. During a 2-year survey, the hepatic EROD activity, the micronucleus formation and the level of primary DNA strand breaks in erythrocytes were measured respectively as an enzymatic biomarker of exposure and genotoxicity endpoints in fish living upstream and downstream of two chemically-contrasted rivers. Hepatic EROD activity was shown to be variable along the time but always significantly higher in fish from the most contaminated river (Rivi{\`e}re aux Herbes) compared to the low contaminated one (Grande Rivi{\`e}re de Vieux-Habitants). Fish size did not influence EROD activity. Female fish exhibited a lower EROD activity compared to males depending on the catching period. We observed significant temporal variation in micronucleus frequency and primary DNA damage level measured in fish erythrocytes that did not depend on the fish size. Micronucleus frequency and to a lesser extent DNA damage were significantly higher in fish from the Rivi{\`e}re aux Herbes compared to the Grande Rivi{\`e}re de Vieux-Habitants. Our results argue for the interest of using Sicydium spp. as sentinel species to assess river quality and chemical pressures in FWI.},
	issn = {0166445X},
	doi = {10.1016/j.aquatox.2023.106623},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0166445X23002266},
	author = {Bony, S. and Labeille, M. and Lefrancois, E. and Noury, P. and Olivier, J.M. and Santos, R. and Teichert, Nils and Besnard, A. and Devaux, A.}
}
@article {9326,
	title = {Impact assessment of metals realeased by aluminium-based galvanic anode on the physiology of the abalone Haliotis tuberculata in controlled conditions},
	journal = {Ecotoxicology},
	volume = {32},
	year = {2023},
	month = {Jan-05-2023},
	pages = {438 - 450},
	abstract = {To protect metal structures immersed in the sea from corrosion, the galvanic anode cathodic protection system (GACP) is often applied. However, this association leads to continuous oxidation of the galvanic anode and therefore to a release of a metal cocktail in the forms of ions or oxy-hydroxides. Therefore, the main objective of our study was to investigate the toxicity of elements released from the dissolution of an aluminium-based galvanic anode (\~{}95\% Al, \~{}5\% Zn, \&lt;0.1\% for In, Cu, Cd, Mn, Fe) on a grazing gastropod, the abalone Haliotis tuberculata. The present study was carried out in complement to other research currently in submission. Gastropods were exposed for 16 weeks (12 weeks of exposure and 4 weeks of decontamination phase) to 6 conditions including a control, 4 concentrations based on total aluminium level (86, 425, 1096 and 3549 {\textmu}g L-1 ) and a trophic control, corresponding to abalones placed in non-contaminated natural seawater but fed with contaminated algae. The effects of metals on growth, glycogen levels, brix index of hemolymph, MDA levels in digestive gland and gills, hemocyte phagocytic activity, ROS production, lysosomal system and the progress of gametogenesis were investigated throughout the entire exposure allowing the realization of kinetics. The results revealed that the aluminiumbased anode does not seem to have an effect on the health status of the individuals for environmentally realistic concentrations. However, in extreme conditions strong effects were reported on the growth, immune system and reproduction of abalone.},
	issn = {0963-9292},
	doi = {10.1007/s10646-023-02652-9},
	url = {https://link.springer.com/10.1007/s10646-023-02652-9},
	author = {Alexandre Levallois and Nivelais, Laureen and Christelle Caplat and Jean-Marc Lebel and Basuyaux, Olivier and Katherine Costil and Antoine Serpentini}
}
@article {9393,
	title = {Influence of nutrient enrichment on colonisation and photosynthetic parameters of hard substrate marine microphytobenthos},
	journal = {Biofouling},
	year = {2023},
	month = {Feb-10-2023},
	pages = {1 - 18},
	abstract = {This study aimed to assess the influence of nutrient enrichment on the development of microalgal biofilm on concrete and PVC cubes. Three mesocosms were utilized to create a nutrient gradient over a period of 28 days. Various parameters including biomass, photosynthetic activity, microtopography, and extracellular polymeric substances (EPS) were measured. Imaging PAM techniques were employed to obtain surface-wide data. Results revealed that nutrient availability had no significant impact on Chl a biomass and the maximum quantum efficiency of PSII (Fv/Fm). The photosynthetic capacity and efficiency were minimally affected by nutrient availability. Interestingly, the relationship between microphytobenthic (MPB) biomass and photosynthesis and surface rugosity exhibited distinct patterns. Negative reliefs showed a strong correlation with Fv/Fm, while no clear pattern emerged for biomass on rough concrete structures. Overall, our findings demonstrate that under conditions of heightened eutrophication, biofilm photosynthesis thrives in the fissures and crevasses of colonized structures regardless of nutrient levels. This investigation provides valuable insights into the interplay between nutrient availability and surface rugosity.},
	issn = {0892-7014},
	doi = {10.1080/08927014.2023.2261852},
	url = {https://www.tandfonline.com/doi/full/10.1080/08927014.2023.2261852},
	author = {Vivier, Baptiste and Faucheux-Bourlot, Caroline and Orvain, Francis and Chasselin, L{\'e}o and Jolly, Orianne and Navon, Maxime and Boutouil, Mohamed and Goux, Didier and Dauvin, Jean-Claude and Pascal Claquin}
}
@article {9044,
	title = {Influence of Nutrient Gradient on Phytoplankton Size Structure, Primary Production and Carbon Transfer Pathway in a Highly Productive Area (SE Mediterranean)},
	journal = {Ocean Science Journal},
	volume = {58},
	year = {2023},
	month = {Jan-03-2023},
	abstract = {We assessed the spatial variability in the size structure of phytoplankton, community composition, primary production and carbon fluxes through the planktonic food web of the Gulf of Gab{\`e}s (GG; Southeastern Mediterranean Sea) in the fall of 2017 during the MERMEX-MERITE cruise. High concentrations in nutrients, chlorophyll a (~ 2{\textendash}6 μg L -1 ) and primary production (1816{\textendash}3674 mg C m -2 d -1 ) revealed an eutrophic status of the studied stations in the GG. In accordance with hydrodynamic features, inorganic nutrients showed increases in concentrations from North to South and from coast to off- shore, these nutrient gradients impacting the spatial distribution of phytoplankton community. Size-fractioned phytoplankton biomass and production were the lowest in the northernmost zone where they were mainly sustained by pico-sized fraction. Concomitantly, in this area, small aloricate ciliates were dominant leading to a high microbivory. Conversely, higher biomass and production were measured towards the South and offshore with prevalence of larger phytoplankton (nano- and/or micro- sized fractions) supported by diatoms. The herbivorous protozooplankton and metazooplankton were more abundant in these zones, resulting in an increase of the herbivory. The vertical particulate organic carbon flux followed also a north{\textendash}south and coast-offshore increasing gradient, with a higher contribution of phytoplankton, and zooplankton fecal pellets to the sink- ing organic matter in the southernmost area. Our results suggest that even in nutrient-rich and highly productive waters, a continuum of trophic pathways, ranging from microbial to multivorous and herbivorous food webs, may exist, which implies different efficiencies in carbon export and carrying capacity within the ecosystem.},
	keywords = {Phytoplankton size-structure {\textperiodcentered} Primary production {\textperiodcentered} Zooplankton grazing {\textperiodcentered} Planktonic food web {\textperiodcentered} Mediterranean gulf},
	issn = {1738-5261},
	doi = {10.1007/s12601-023-00101-6},
	url = {https://link.springer.com/10.1007/s12601-023-00101-6},
	author = {Chkili Oumayma and Meddeb Marouan and Mejri Kousri Kaouther and Melliti Ben Garali Sondes and Makhlouf Belkhahia Nouha and Tedetti Marc and Pagano Marc and Belaaj Zouari Amel and Belhassen Malika and Niquil Nathalie and Sakka Hlaili Asma}
}
@article {9468,
	title = {An integrated conceptual model to characterize the effects of offshore wind farms on ecosystem services},
	journal = {Ecosystem Services},
	volume = {60},
	year = {2023},
	month = {Jan-04-2023},
	pages = {101513},
	issn = {22120416},
	doi = {10.1016/j.ecoser.2023.101513},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2212041623000050},
	author = {Baulaz, Yoann and Mouchet, Maud and Nathalie Niquil and Ben Rais Lasram, Frida}
}
@article {9523,
	title = {Key issues in assessing threats to sea turtles: knowledge gaps and future directions},
	journal = {Endangered Species Research},
	volume = {52},
	year = {2023},
	month = {Feb-12-2024},
	pages = {303 - 341},
	issn = {1863-5407},
	doi = {10.3354/esr01278},
	url = {https://www.int-res.com/abstracts/esr/v52/p303-341/},
	author = {Fuentes, MMPB and McMichael, E and Kot, CY and Silver-Gorges, I and Wallace, BP and Godley, BJ and Brooks, AML and Ceriani, SA and Cort{\'e}s-G{\'o}mez, AA and Dawson, TM and Dodge, KL and Flint, M and Jensen, MP and Komoroske, LM and Kophamel, S and Lettrich, MD and Long, CA and Nelms, SE and Patr{\'\i}cio, AR and Robinson, NJ and Seminoff, JA and Ware, M and Whitman, ER and Chevallier, Damien and Clyde-Brockway, CE and Korgaonkar, SA and Mancini, A and Mello-Fonseca, J and Monsinjon, JR and Neves-Ferreira, I and Ortega, AA and Patel, SH and Pfaller, JB and Ramirez, MD and Raposo, C and Smith, CE and Abreu-Grobois, FA and Hays, GC}
}
@article {9070,
	title = {Local Food Systems under Global Influence: The Case of Food, Health and Environment in Five Socio-Ecosystems},
	journal = {Sustainability},
	volume = {15},
	year = {2023},
	month = {Jan-02-2023},
	pages = {2376},
	doi = {10.3390/su15032376},
	url = {https://www.mdpi.com/2071-1050/15/3/2376},
	author = {Rapinski, Michael and Raymond, Richard and Davy, Damien and Herrmann, Thora and Bedell, Jean-Philippe and Ka, Abdou and Odonne, Guillaume and Chanteloup, Laine and Pascal Jean Lopez and Foulquier, Eric and da Silva, Eduardo Ferreira and El Deghel, Nathalie and Bo{\"e}tsch, Gilles and Coxam, V{\'e}ronique and Joliet, Fabienne and Guihard-Costa, Anne-Marie and Tib{\`e}re, Laurence and Nazare, Julie-Anne and Duboz, Priscilla}
}
@article {9108,
	title = {Marine invertebrates and noise},
	journal = {Frontiers in Marine Science},
	volume = {10},
	year = {2023},
	month = {March-07-2023},
	abstract = {Within the set of risk factors that compromise the conservation of marine biodiversity, one of the least understood concerns is the noise produced by human operations at sea and from land. Many aspects of how noise and other forms of energy may impact the natural balance of the oceans are still unstudied. Substantial attention has been devoted in the last decades to determine the sensitivity to noise of marine mammals{\textemdash}especially cetaceans and pinnipeds{\textemdash} and fish because they are known to possess hearing organs. Recent studies have revealed that a wide diversity of invertebrates are also sensitive to sounds, especially via sensory organs whose original function is to allow maintaining equilibrium in the water column and to sense gravity. Marine invertebrates not only represent the largest proportion of marine biomass and are indicators of ocean health but many species also have important socio-economic values. This review presents the current scientific knowledge on invertebrate bioacoustics (sound production, reception, sensitivity), as well as on how marine invertebrates are affected by anthropogenic noises. It also critically revisits the literature to identify gaps that will frame future research investigating the tolerance to noise of marine ecosystems.},
	keywords = {marine invertebrates, marine noise pollution, noise effects, particle motion, sound detection, sound pressure, sound production, statocyst},
	doi = {10.3389/fmars.2023.1129057},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2023.1129057/full},
	author = {Sol{\'e}, Marta and Kaifu, Kenzo and Mooney, T. Aran and Nedelec, Sophie L. and Fr{\'e}d{\'e}ric Olivier and Radford, Andrew N. and Vazzana, Mirella and Wale, Matthew A. and Semmens, Jayson M. and Simpson, Stephen D. and Buscaino, Giuseppa and Hawkins, Anthony and Aguilar de Soto, Natacha and Akamatsu, Tomoari and Chauvaud, Laurent and Day, Ryan D. and Fitzgibbon, Quinn and McCauley, Robert D. and Andr{\'e}, Michel}
}
@book {9244,
	title = {Modelling species distribution, ecosystem structure and function and climate change},
	year = {2023},
	publisher = {Elsevier},
	organization = {Elsevier},
	abstract = {In recent decades, oceans have been increasingly stressed by human activities that induced significant changes in its abiotic properties. Temperature increase, acidification,\&nbsp;deoxygenation, deregulation of ocean currents are some examples of the anthropogenic impact on our oceans. In addition, pollution and\&nbsp;overexploitation\&nbsp;of marine resources will lead to severe and possibly irreversible changes for marine life. As environmental conditions directly affect the physiology of species, changes in species distribution and\&nbsp;trophic interactions\&nbsp;have already been observed and are expected to increase in the near future. Predicting future oceans is currently a great challenge for scientists that work to maintain, as best as possible, the goods and services they provide. In this context, ecologists have developed several modeling approaches able to simulate changes in both species distribution (Ecological Niche Models {\textendash} ENMs) and interactions (static and dynamic food-web models). This chapter explains these two approaches in detail as well as the ways by which these two families of models can be coupled. In each part, the main existing algorithms will be reviewed, with their advantages and limitations, and some key examples retrieved from recent scientific literature will be presented. Finally, we will discuss the current issues of these methods and their potential improvement.},
	isbn = {9780124095489},
	doi = {10.1016/B978-0-323-90798-9.00028-7},
	url = {https://linkinghub.elsevier.com/retrieve/pii/B9780323907989000287},
	author = {Saint-B{\'e}at, Blanche and Nogues, Quentin and Nathalie Niquil and Bourdaud, Pierre and Virginie Raybaud and Goberville, Eric and Gr{\'e}gory Beaugrand and Ben Rais Lasram, Frida and Le Loc{\textquoteright}h, Fran{\c c}ois and Schickele, Alexandre}
}
@article {9460,
	title = {The Neglected Role of Intraspecific Variation in Plastic Pollution Research},
	journal = {Anthropocene Science},
	volume = {2},
	year = {2023},
	pages = {141-147},
	doi = {https://doi.org/10.1007/s44177-023-00060-6},
	author = {Nicastro, Katy R. and Seuront, Laurent and Lorenzo Cozzolino and Zardi, Gerardo I.}
}
@article {9462,
	title = {Size-dependent response of the mussel collective behaviour to plastic leachates and predator cues},
	journal = {Science of The Total Environment},
	volume = {888},
	year = {2023},
	month = {2023},
	issn = {0048-9697},
	doi = {https://doi.org/10.1016/j.scitotenv.2023.164037},
	author = {Marine Uguen and Sylvie M Gaudron and Nicastro, Katy R. and Zardi, Gerardo I. and Nicolas Spilmont and Seuront, Laurent}
}
@article {9469,
	title = {Socio-political acceptability of floating offshore wind farms in France: challenges and perspectives for marine governance towards sustainability},
	journal = {Ocean \& Coastal Management},
	volume = {236},
	year = {2023},
	month = {Jan-04-2023},
	pages = {106513},
	issn = {09645691},
	doi = {10.1016/j.ocecoaman.2023.106513},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0964569123000388},
	author = {Fofack-Garcia, Rhoda and Maz{\'e}, Camille and Safi, Georges and Lejart, Morgane and Chauvac, Nathalie and Thermes, Maud and Ragueneau, Olivier and Le Loc{\textquoteright}h, Francois and Nathalie Niquil}
}
@article {9467,
	title = {Structure of planktonic food web in the Gulf of Gab{\`e}s (Southeastern Mediterranean): potential importance of heterotrophic and mixotrophic microzooplankton},
	journal = {Aquatic Sciences},
	volume = {85},
	year = {2023},
	month = {Jan-04-2023},
	issn = {1015-1621},
	doi = {10.1007/s00027-023-00954-y},
	url = {https://link.springer.com/10.1007/s00027-023-00954-y},
	author = {Mejri Kousri, Kaouther and Belaaj Zouari, Amel and Meddeb, Marouan and Chkili, Oumayma and Nathalie Niquil and Tedetti, Marc and Pagano, Marc and Sammari, Cherif and Khammeri, Yosra and Bel Hassen, Malika and Sakka Hlaili, Asma}
}
@article {9463,
	title = {Symbiont-induced phenotypic variation in an ecosystem engineer mediates thermal stress for the associated community},
	journal = {Journal of Thermal Biology},
	volume = {112},
	year = {2023},
	month = {2023},
	issn = {0306-4565},
	doi = {https://doi.org/10.1016/j.jtherbio.2022.103428﻿},
	author = {Zardi, Gerardo I. and Seuront, Laurent and Christopher D. McQuaid and Pierre William Froneman and Nicastro, Katy R.}
}
@article {9461,
	title = {Transcriptome wide analyses reveal intraspecific diversity in thermal stress responses of a dominant habitat-forming species},
	journal = {Scientific Reports},
	volume = {13},
	year = {2023},
	month = {2023},
	doi = {https://doi.org/10.1038/s41598-023-32654-w},
	author = {Nicastro, Katy R. and Pearson, G.A. and Ramos, X. and Vasco Pearson and Christopher Mc Quaid and Zardi, Gerardo I.}
}
@article {9465,
	title = {The usefulness of food web models in the ecosystem services framework: Quantifying, mapping, and linking services supply},
	journal = {Ecosystem Services},
	volume = {63},
	year = {2023},
	month = {Jan-10-2023},
	pages = {101550},
	issn = {22120416},
	doi = {10.1016/j.ecoser.2023.101550},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2212041623000438},
	author = {Nogues, Quentin and Baulaz, Yoann and Clavel, Joanne and Araignous, Emma and Bourdaud, Pierre and Ben Rais Lasram, Frida and Dauvin, Jean-Claude and Girardin, Valerie and Halouani, Ghassen and Le Loc{\textquoteright}h, Francois and Loew-Turbout, Fr{\'e}d{\'e}rique and Raoux, Aurore and Nathalie Niquil}
}
@article {9182,
	title = {Additional records of Sicyopus discordipinnis (Watson, 1995) (Oxudercidae: Sicydiinae) in Central Sulawesi, Indonesia.},
	journal = {Cybium},
	volume = {46},
	year = {2022},
	month = {02/2022},
	pages = {41-43},
	author = {Nurjirana and Burhanuddin, A I and Philippe Keith and Haris, A}
}
@article {8832,
	title = {Assessing the state of marine biodiversity in the Northeast Atlantic},
	journal = {Ecological Indicators},
	volume = {141},
	year = {2022},
	month = {Jan-08-2022},
	pages = {109148},
	issn = {1470160X},
	doi = {10.1016/j.ecolind.2022.109148},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1470160X22006203},
	author = {McQuatters-Gollop, A. and Gu{\'e}rin, L. and Arroyo, N.L. and Aubert, A. and Artigas, L.F. and Bedford, J. and Corcoran, E. and Dierschke, V. and Elliott, S.A.M. and Geelhoed, S.C.V. and Gilles, A. and Gonz{\'a}lez-Irusta, J.M. and Haelters, J. and Johansen, M. and Le Loc{\textquoteright}h, F. and Lynam, C.P. and Nathalie Niquil and Meakins, B. and Mitchell, I. and Padegimas, B. and Pesch, R. and Preciado, I. and Rombouts, I. and Safi, G. and Schmitt, P. and Sch{\"u}ckel, U. and Serrano, A. and Stebbing, P. and De la Torriente, A. and Vina-Herbon, C.}
}
@article {8759,
	title = {Bi-decadal changes in nutrient concentrations and ratios in marine coastal ecosystems: The case of the Arcachon bay, France},
	journal = {Progress in Oceanography},
	volume = {201},
	year = {2022},
	month = {Jan-02-2022},
	pages = {102740},
	issn = {00796611},
	doi = {10.1016/j.pocean.2022.102740},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0079661122000027},
	author = {Lheureux, A. and David, V. and Del Amo, Y. and Soudant, D. and Auby, I. and Ganthy, F. and Blanchet, H. and Cordier, M-A. and Costes, L. and Ferreira, S. and Mornet, L. and Nowaczyk, A. and Parra, M. and D{\textquoteright}Amico, F. and Gouriou, L. and Meteigner, C. and Oger-Jeanneret, H. and Rigouin, L. and Rumebe, M. and Tournaire, M-P. and Trut, F. and Trut, G. and Savoye, N.}
}
@article {8991,
	title = {Cephalopod palaeobiology: evolution and life history of the most intelligent invertebratesAbstract},
	journal = {Swiss Journal of Palaeontology},
	volume = {141},
	year = {2022},
	month = {Jan-12-2022},
	issn = {1664-2376},
	doi = {10.1186/s13358-022-00247-1},
	url = {https://sjpp.springeropen.com/articles/10.1186/s13358-022-00247-1},
	author = {Klug, Christian and Laure Bonnaud-Ponticelli and Nabhitabhata, Jaruwat and Fuchs, Dirk and De Baets, Kenneth and Cheng, Ji and Hoffmann, Ren{\'e}}
}
@article {8735,
	title = {Colonisation of artificial structures by primary producers: competition and photosynthetic behaviour},
	journal = {Biofouling},
	year = {2022},
	month = {Apr-06-2023},
	pages = {1 - 14},
	issn = {0892-7014},
	doi = {10.1080/08927014.2022.2088285},
	url = {https://www.tandfonline.com/doi/full/10.1080/08927014.2022.2088285},
	author = {Vivier, Baptiste and Navon, Maxime and Dauvin, Jean-Claude and Chasselin, L{\'e}o and Deloor, Ma{\"e}l and Orvain, Francis and Rusig, Anne-Marie and Mussio, Isabelle and Boutouil, Mohamed and Pascal Claquin}
}
@book {9059,
	title = {European Spatial Data for Coastal and Marine Remote SensingLocal Circalittoral Rocky Seascape Structuring Fish Community: Insights from a Photogrammetric Approach},
	year = {2022},
	pages = {229 - 234},
	publisher = {Springer International Publishing},
	organization = {Springer International Publishing},
	address = {Cham},
	abstract = {Fish face multiple environmental pressures acting as multiscale filters structuring the community [6]. Study of the effect of local (~100 m2) habitat components such as habitat architecture, substrate composition, and benthic community on fish community is still limited because of the technical difficulties to sample reliable descriptors of all these habitat components. Nevertheless, the effect of the 3D architecture, especially the complexity, has been highlighted to act as an important variable, locally structuring fish communities and leading to an increase in diversity (species richness and Shannon index) and quantity (total density and biomass) of fish [1]. Photogrammetry is extending to submarine environment and allows to produce very fine information of the architecture and substrate composition [5], as well as of the benthic community [4]. The influence of the different habitat components (i.e., architecture, substrate composition, and benthic community) on the structure of fish community is here investigated, as well as the interest of photogrammetry in comparison to visual observation (Fig. 1).},
	keywords = {Architecture, Benthic community, Fish community, Photogrammetry, Seascape, Substrate composition},
	isbn = {978-3-031-16212-1},
	doi = {10.1007/978-3-031-16213-810.1007/978-3-031-16213-8_16},
	url = {https://link.springer.com/10.1007/978-3-031-16213-8},
	author = {Ternon, Quentin and Collin, Antoine and Feunteun, Eric and Ysnel, Fr{\'e}d{\'e}ric and Danet, Valentin and Guillaume, Manon and Thiriet, Pierre},
	editor = {Niculescu, Simona}
}
@article {9187,
	title = {First record of Hippichthys albomaculosus Jenkins \& Mailautoka, 2010 (Syngnathidae) in New Caledonia. Cybium, 46(1): 53-55.},
	journal = {Cybium},
	volume = {46},
	year = {2022},
	month = {02/2022},
	pages = {53-55},
	author = {Vincent Ha{\"y} and Charpin Nicolas and Philippe Keith and Clara Lord and Marion Mennesson}
}
@article {8869,
	title = {Immuno-Enzymatic and Proteomic Approaches for Sexing the African Bonytongue (Heterotis niloticus Cuvier, 1829)},
	journal = {Fishes},
	volume = {7},
	year = {2022},
	month = {Jan-06-2022},
	pages = {106},
	doi = {10.3390/fishes7030106},
	url = {https://www.mdpi.com/2410-3888/7/3/106},
	author = {Koua, N{\textquoteright}Zi Daniel and Henry, Jo{\"e}l and Corre, Erwan and Pontin, Julien and Bernay, Beno{\^\i}t and N{\'u}{\~n}ez-Rodr{\'\i}guez, Jes{\'u}s}
}
@article {8959,
	title = {Methods to detect spatial biases in tracking studies caused by differential representativeness of individuals, populations and time},
	journal = {Diversity and Distributions},
	year = {2022},
	month = {Mar-10-2024},
	issn = {1366-9516},
	doi = {10.1111/ddi.13642},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/ddi.13642},
	author = {Morera-Pujol, Virginia and Catry, Paulo and Magalh{\~a}es, Maria and Clara P{\'e}ron and Reyes-Gonz{\'a}lez, Jos{\'e} Manuel and Granadeiro, Jos{\'e} Pedro and Milit{\~a}o, Teresa and Dias, Maria P. and Oro, Daniel and Dell{\textquoteright}Omo, Giacomo and M{\"u}ller, Martina and Paiva, Vitor H. and Metzger, Benjamin and Neves, Ver{\'o}nica and Navarro, Joan and Karris, Georgios and Xirouchakis, Stavros and Cecere, Jacopo G. and Zamora-L{\'o}pez, Antonio and Forero, Manuela G. and Ouni, Ridha and Romdhane, Mohamed Salah and De Felipe, Fernanda and Zajkov{\'a}, Zuzana and Cruz-Flores, Marta and Gr{\'e}millet, David and Gonz{\'a}lez-Sol{\'\i}s, Jacob and Ramos, Ra{\"u}l}
}
@article {8834,
	title = {Potential combined impacts of climate change and non-indigenous species arrivals on Bay of Biscay trophic network structure and functioning},
	journal = {Journal of Marine Systems},
	volume = {228},
	year = {2022},
	month = {Jan-04-2022},
	pages = {103704},
	issn = {09247963},
	doi = {10.1016/j.jmarsys.2022.103704},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0924796322000070},
	author = {Le Marchand, M. and Ben Rais Lasram, F. and Araignous, E. and Saint-B{\'e}at, B. and Lassalle, G. and Michelet, N. and Serre, S. and Safi, G. and Lejart, M. and Nathalie Niquil and Le Loc{\textquoteright}h, F.}
}
@article {8835,
	title = {The Response of North Sea Ecosystem Functional Groups to Warming and Changes in Fishing},
	journal = {Frontiers in Marine Science},
	volume = {9},
	year = {2022},
	month = {Apr-04-2022},
	doi = {10.3389/fmars.2022.841909},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2022.841909/full},
	author = {Thorpe, Robert B. and Arroyo, Nina L. and Safi, Georges and Nathalie Niquil and Preciado, Izaskun and Heath, Michael and Pace, Matthew C. and Lynam, Christopher P.}
}
@article {8540,
	title = {A review of methods and indicators used to evaluate the ecological modifications generated by artificial structures on marine ecosystems},
	journal = {Journal of Environmental Management},
	volume = {310},
	year = {2022},
	month = {Jan-05-2022},
	pages = {114646},
	issn = {03014797},
	doi = {10.1016/j.jenvman.2022.114646},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0301479722002195},
	author = {Taormina, Bastien and Pascal Claquin and Vivier, Baptiste and Navon, Maxine and Pezy, Jean-Philippe and Raoux, Aurore and Dauvin, Jean-Claude}
}
@article {8696,
	title = {Seasonal dynamics of marine protist communities in tidally mixed coastal waters},
	journal = {Molecular Ecology},
	year = {2022},
	month = {Aug-05-2023},
	abstract = {Major seasonal community reorganizations and associated biomass variations are landmarks of plankton ecology. However, the processes of plankton community turnover rates have not been fully elucidated so far. Here, we analyse patterns of planktonic protist community succession in temperate latitudes, based on quantitative taxonomic data from both microscopy counts (cells \&gt; 10 μm) and ribosomal DNA metabarcoding (size fraction \&gt; 3 μm, 18S rRNA gene) from plankton samples collected biweekly over 8 years (2009-2016) at the SOMLIT-Astan station (Roscoff, Western English Channel). Based on morphology, diatoms were clearly the dominating group all year round and over the study period. Metabarcoding uncovered a wider diversity spectrum and revealed the prevalence of Dinophyceae and diatoms but also of Cryptophyta, Chlorophyta, Cercozoa, Syndiniales and Ciliophora in terms of read counts and or richness. The use of morphological and molecular analyses in combination allowed improving the taxonomic resolution and to identify the sequence of the dominant species and OTUs (18S V4 rDNA-derived taxa) that drive annual plankton successions. We detected that some of these dominant OTUs were benthic as a result of the intense tidal mixing typical of the French coasts in the English Channel. Our analysis of the temporal structure of community changes point to a strong seasonality and resilience. The temporal structure of environmental variables (especially Photosynthetic Active Radiation, temperature and macronutrients) and temporal structures generated by species life cycles and or species interactions, are key drivers of the observed cyclic annual plankton turnover.},
	issn = {0962-1083},
	doi = {10.1111/mec.16539},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/mec.16539},
	author = {Caracciolo, Mariarita and Rigaut-Jalabert, Fabienne and Romac, Sarah and Mah{\'e}, Fr{\'e}d{\'e}ric and Forsans, Samuel and Gac, Jean-Philippe and Arsenieff, Laure and Manno, Maxime and Chaffron, Samuel and Cariou, Thierry and Hoebeke, Mark and Bozec, Yann and Goberville, Eric and Le Gall, Florence and Guilloux, Lo{\"\i}c and Baudoux, Anne-Claire and de Vargas, Colomban and Not, Fabrice and Thi{\'e}baut, Eric and Henry, Nicolas and Simon, Nathalie}
}
@article {8833,
	title = {Spatialized ecological network analysis for ecosystem-based management: effects of climate change, marine renewable energy, and fishing on ecosystem functioning in the Bay of SeineAbstract},
	journal = {ICES Journal of Marine Science},
	volume = {79},
	year = {2022},
	month = {Dec-02-2023},
	pages = {1098 - 1112},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsac026},
	url = {https://academic.oup.com/icesjms/article/79/4/1098/6535870},
	author = {Nogues, Quentin and Araignous, Emma and Bourdaud, Pierre and Halouani, Ghassen and Raoux, Aurore and Foucher, Eric and Loc{\textquoteright}h, Fran{\c c}ois Le and Loew-Turbout, Fr{\'e}d{\'e}rique and Ben~Rais~Lasram, Frida and Dauvin, Jean-Claude and Nathalie Niquil}
}
@article {8643,
	title = {SPREADING EUTROPHICATION AND CHANGING  CO2 FLUXES IN THE TROPICAL COASTAL OCEAN:  A FEW LESSONS FROM RIO DE JANEIRO},
	journal = {Arquivos de Ci{\^e}ncias do Mar},
	volume = {55},
	year = {2022},
	month = {Sep-03-2023},
	pages = {461 - 476},
	issn = {0374-5686},
	doi = {10.32360/acmar.v55iEspecial10.32360/acmar.v55iEspecial.78518},
	url = {http://periodicos.ufc.br/arquivosdecienciadomar/issue/view/1159},
	author = {Gwena{\"e}l Abril and C. Cotovicz Jr., Luiz and Nepomuceno, Aguinaldo and Erbas, Tha{\'\i}s and Costa, Suzan and V. Ramos, Vinicius and Moser, Gleyci and Fernandes, Alexandre and Negri, Eduardo and A. Knoppers, Bastiaan and Brandini, Nilva and Machado, Wilson and Bernardes, Marcelo and Vantrepotte, Vincent}
}
@article {8465,
	title = {Transient Receptor Potential-Vanilloid (TRPV1-TRPV4) Channels in the Atlantic Salmon, Salmo salar. A Focus on the Pineal Gland and Melatonin Production},
	journal = {Frontiers in Physiology},
	volume = {22},
	year = {2022},
	month = {01/2022},
	pages = {15},
	type = {original research},
	abstract = {Fish are ectotherm, which rely on the external temperature to regulate their internal body temperature, although some may perform partial endothermy. Together with photoperiod, temperature oscillations, contribute to synchronizing the daily and seasonal variations of fish metabolism, physiology and behavior. Recent studies are shedding light on the mechanisms of temperature sensing and behavioral thermoregulation in fish. In particular, the role of some members of the transient receptor potential channels (TRP) is being gradually unraveled. The present study in the migratory Atlantic salmon, Salmo salar, aims at identifying the tissue distribution and abundance in mRNA corresponding to the TRP of the vanilloid subfamilies, TRPV1 and TRPV4, and at characterizing their putative role in the control of the temperature-dependent modulation of melatonin production{\textemdash}the time-keeping hormone{\textemdash}by the pineal gland. In Salmo salar, TRPV1 and TRPV4 mRNA tissue distribution appeared ubiquitous; mRNA abundance varied as a function of the month investigated. In situ hybridization and immunohistochemistry indicated specific labeling located in the photoreceptor cells of the pineal gland and the retina. Additionally, TRPV analogs modulated the production of melatonin by isolated pineal glands in culture. The TRPV1 agonist induced an inhibitory response at high concentrations, while evoking a bell-shaped response (stimulatory at low, and inhibitory at high, concentrations) when added with an antagonist. The TRPV4 agonist was stimulatory at the highest concentration used. Altogether, the present results agree with the known widespread distribution and role of TRPV1 and TRPV4 channels, and with published data on trout (Oncorhynchus mykiss), leading to suggest these channels mediate the effects of temperature on S. salar pineal melatonin production. We discuss their involvement in controlling the timing of daily and seasonal events in this migratory species, in the context of an increasing warming of water temperatures.},
	keywords = {Atlantic salmon, melatonin, pineal organ, Temperature, transient receptor potential vanilloid (TRPV), TRPV1, TRPV4},
	doi = {10.3389/fphys.2021.784416},
	url = {https://www.frontiersin.org/articles/10.3389/fphys.2021.784416/full?\&utm_source=Email_to_authors_\&utm_medium=Email\&utm_content=T1_11.5e1_author\&utm_campaign=Email_publication\&field=\&journalName=Frontiers_in_Physiology\&id=784416},
	author = {Nisembaum, Laura Gabriela and Loentgen, Guillaume and L{\textquoteright}Honor{\'e}, Thibault and Martin, Patrick and Paulin, Charles-Hubert and Fuent{\`e}s, Michael and Escoubeyrou, Karine and Delgado, Maria Jesus and Besseau, Laurence and Falc{\'o}n, Jack}
}
@article {8836,
	title = {Analysis of trophic networks: an optimisation approach},
	journal = {Journal of Mathematical Biology},
	volume = {83},
	year = {2021},
	month = {Jan-11-2021},
	issn = {0303-6812},
	doi = {10.1007/s00285-021-01682-3},
	url = {https://link.springer.com/10.1007/s00285-021-01682-3},
	author = {Caputo, Jean-Guy and Girardin, Valerie and Knippel, Arnaud and Nguyen, Minh Hieu and Nathalie Niquil and Nogues, Quentin}
}
@article {8707,
	title = {Are we ready to track climate-driven shifts in marine species across international boundaries? - A global survey of scientific bottom trawl data},
	journal = {Global Change Biology},
	volume = {27},
	year = {2021},
	month = {Jan-01-2021},
	pages = {220 - 236},
	issn = {1354-1013},
	doi = {10.1111/gcb.v27.210.1111/gcb.15404},
	url = {https://onlinelibrary.wiley.com/toc/13652486/27/2},
	author = {Maureaud, Aurore and Frelat, Romain and P{\'e}cuchet, Laur{\`e}ne and Shackell, Nancy and M{\'e}rigot, Bastien and Pinsky, Malin L. and Amador, Kofi and Anderson, Sean C. and Arkhipkin, Alexander and Auber, Arnaud and Barri, I{\c c}a and Bell, Richard J. and Belmaker, Jonathan and Beukhof, Esther and Camara, Mohamed L. and Guevara-Carrasco, Renato and Choi, Junghwa and Christensen, Helle T. and Conner, Jason and Cubillos, Luis A. and Diadhiou, Hamet D. and Edelist, Dori and Emblemsv{\r a}g, Margrete and Ernst, Billy and Fairweather, Tracey P. and Fock, Heino O. and Friedland, Kevin D. and Garcia, Camilo B. and Gascuel, Didier and Gislason, Henrik and Goren, Menachem and Guitton, J{\'e}r{\^o}me and Jouffre, Didier and Hattab, Tarek and Hidalgo, Manuel and Kathena, Johannes N. and Knuckey, Ian and Kid{\'e}, Sa{\"\i}kou O. and Koen-Alonso, Mariano and Koopman, Matt and Kulik, Vladimir and Le{\'o}n, Jacqueline Palacios and Levitt-Barmats, Ya{\textquoteright}arit and Lindegren, Martin and Llope, Marcos and Massiot-Granier, F{\'e}lix and Masski, Hicham and McLean, Matthew and Meissa, Beyah and M{\'e}rillet, Laur{\`e}ne and Mihneva, Vesselina and Nunoo, Francis K. E. and O{\textquoteright}Driscoll, Richard and O{\textquoteright}Leary, Cecilia A. and Petrova, Elitsa and Ramos, Jorge E. and Refes, Wahid and Rom{\'a}n-Marcote, Esther and Siegstad, Helle and Sobrino, Ignacio and S{\'o}lmundsson, J{\'o}n and Sonin, Oren and Spies, Ingrid and Steingrund, Petur and Stephenson, Fabrice and Stern, Nir and Tserkova, Feriha and Tserpes, Georges and Tzanatos, Evangelos and Rijn, Itai and Zwieten, Paul A. M. and Vasilakopoulos, Paraskevas and Yepsen, Daniela V. and Ziegler, Philippe and Thorson, James}
}
@article {9951,
	title = {Assessment of some key indicators of the ecological status of an African freshwater lagoon (Lagoon Aghien, Ivory Coast)},
	journal = {PLOS ONE},
	volume = {16},
	year = {2021},
	month = {Jun-05-2021},
	pages = {e0251065},
	doi = {10.1371/journal.pone.0251065},
	url = {https://dx.plos.org/10.1371/journal.pone.0251065},
	author = {Koffi Ahoutou, Mathias and Yao Djeha, Rosine and Kouam{\'e} Yao, Eric and Quiblier, Catherine and Niamen-Ebrotti{\'e}, Julie and Sahima Hamlaoui and Tambosco, Kevin and Perrin, Jean-Louis and Troussellier, Marc and Bernard, C{\'e}cile and Seguis, Luc and Bouvy, Marc and P{\'e}dron, Jacques and Koffi Konan, Felix and Humbert, Jean-Fran{\c c}ois and Kalpy Coulibaly, Julien},
	editor = {Wood, Susanna A.}
}
@article {7580,
	title = {Bi-decadal variability in physico-biogeochemical characteristics of temperate coastal ecosystems: from large-scale to local drivers},
	journal = {Marine Ecology Progress Series},
	volume = {660},
	year = {2021},
	month = {Feb-18-2021},
	pages = {19-35},
	abstract = {Coastal marine ecosystems, which play a crucial role in the biogeochemical and ecological functioning of the earth system, are highly sensitive to the combined effects of climate and human activities. Because of their location, coastal ecosystems are directly influenced by human activities. Thus, it remains challenging to assess the spatial and temporal scales at which climate influences coastal ecosystems. Twelve sampling stations distributed in eight ecosystems of Western Europe were monitored during two decades for physico-biogeochemical parameters (temperature, salinity, concentrations of dissolved oxygen, nutrients and particulate material). The study encompasses a large diversity of temperate coastal ecosystems regarding geomorphology, trophic status, tidal regime, river influence, turbidity, and so on. Time-series analysis coupled with standardised 3-mode Principal Component Analyses, Partial Triadic Analyses and correlations were used to assess bi-decadal variability and ecosystems trajectories, and to detect the large-scale, regional and local drivers. Overall results highlight two abrupt changes in 2001 and 2005. The\&nbsp;bi-decadal changes are related to changes in large-scale and regional climate; detected through proxies of temperature and atmospheric\&nbsp;circulation, as well as through river\&nbsp;discharge. Ecosystem trajectories usually move towards an increase in temperature, salinity and/or a decrease in chlorophyll-a, nutrients and particulate matter. However, the magnitude of change, the year-to-year variability and the sensitivity to the 2001 and 2005 changes vary among the ecosystems. This study highlights the need to perform long-term time series and combining data sets as well as multi-ecosystem and local studies to better understand long-term variability of coastal ecosystems and its associated drivers.},
	issn = {0171-8630},
	doi = {10.3354/meps13577},
	url = {https://doi.org/10.3354/meps13577},
	author = {Lheureux, Arnaud and Savoye, Nicolas and Del Amo, Yolanda and Goberville, Eric and Bozec, Yann and Elsa Breton and Conan, Pascal and L{\textquoteright}Helguen, St{\'e}phane and Mousseau, Laure and Raimbault, Patrick and Rimelin-Maury, Peggy and Seuront, Laurent and Vuillemin, Renaud and Caparros, Jocelyne and Cariou, Thierry and Cordier, MA and Corre, Anne-Marie and Costes, Laurence and Crispi, O. and Muriel Crouvoisier and de Latour, HdL and Derriennic, Herv{\'e} and Devesa, J{\'e}r{\'e}my and Durozier, Ma{\"\i}a and Ferreira, Sophie and Garcia, Nicole and Emilie Grossteffan and Gueux, Aurore and Lafont, M and Lagadec, V{\'e}ronique and Lecuyer, Eric and Leroux, C{\'e}dric and Mac{\'e}, Eric and Maria, E and Mornet, L and Antoine Nowaczyk and Parra, M and Petit, Fabienne and David, V}
}
@article {8990,
	title = {Born With Bristles: New Insights on the K{\"o}lliker{\textquoteright}s Organs of Octopus Skin},
	journal = {Frontiers in Marine Science},
	volume = {8},
	year = {2021},
	doi = {10.3389/fmars.2021.645738},
	url = {https://hal.archives-ouvertes.fr/hal-03326946},
	author = {Villanueva, Roger and Coll-Llad{\'o}, Montserrat and Laure Bonnaud-Ponticelli and Carrasco, Sergio and Escolar, Oscar and Fern{\'a}ndez-{\'A}lvarez, Fernando {\'A}. and Gleadall, Ian and Nabhitabhata, Jaruwat and Ortiz, Nicol{\'a}s and Rosas, Carlos and S{\'a}nchez, Pilar and Voight, Janet and Swoger, Jim}
}
@article {7947,
	title = {Coupling high frequency monitoring and bioassay experiments to investigate a harmful algal bloom in the Bay of Seine (French-English Channel)},
	journal = {Marine Pollution Bulletin},
	volume = {168},
	year = {2021},
	month = {Jan-07-2021},
	pages = {112387},
	abstract = {Coastal ecosystems are increasingly threatened by eutrophication and dystrophy. In this context, the full pattern of a bloom dominated by the dinoflagellate, <em>Lepidodinium chlorophorum</em>, was investigated by a high frequency monitoring buoy equipped with sensors allowing nutrients and photosynthesis measurements. An increase of the N/P ratio affected phytoplankton physiology leading to bloom collapse with a slight oxygen depletion. In parallel, enrichment experiments were performed on the natural bloom population. After 5 days of incubation the community structure, using flow cytometry and several physiological parameters were analysed. The data reveal a potential N and P co-limitation and a decoupling between primary production and productivity in fully enriched conditions. Under unbalanced N/P inputs, high level of alkaline phosphatase activity and transparent exopolymeric particle production, which favour phytoplankton sedimentation, were observed. Nutrient inputs and their stoichiometry control phytoplankton growth, the community structure, physiological regulations, the fate of the bloom and consequences.},
	issn = {0025326X},
	doi = {10.1016/j.marpolbul.2021.112387},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0025326X21004215},
	author = {Serre-Fredj, L{\'e}on and Jacqueline, Franck and Navon, Maxime and Izabel, Guillaume and Chasselin, L{\'e}o and Jolly, Orianne and R{\'e}p{\'e}caud, Michel and Pascal Claquin}
}
@article {8143,
	title = {Cumulative effects of marine renewable energy and climate change on ecosystem properties: Sensitivity of ecological network analysis},
	journal = {Ecological Indicators},
	volume = {121},
	year = {2021},
	month = {Jan-02-2021},
	pages = {107128},
	issn = {1470160X},
	doi = {10.1016/j.ecolind.2020.107128},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1470160X20310670},
	author = {Nogues, Quentin and Raoux, Aurore and Araignous, Emma and Chaalali, Aur{\'e}lie and Hattab, Tarek and Leroy, Boris and Ben Rais Lasram, Frida and David, Val{\'e}rie and Le Loc{\textquoteright}h, Francois and Dauvin, Jean-Claude and Nathalie Niquil}
}
@article {7700,
	title = {Dietary taurine improves vision in different age gilthead sea bream (Sparus aurata) larvae potentially contributing to increased prey hunting success and growth},
	journal = {Aquaculture},
	volume = {533},
	year = {2021},
	month = {Jan-02-2021},
	pages = {736129},
	issn = {00448486},
	doi = {10.1016/j.aquaculture.2020.736129},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0044848620338357},
	author = {Gaon, A. and Nixon, O. and Tandler, A. and Falcon, J. and Besseau, L. and Escande, M. and El Sadin, S. and Allon, G. and Koven, W.}
}
@article {8655,
	title = {The economic costs of biological invasions in Africa: a growing but neglected threat?},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {11 - 51},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.59132},
	url = {https://neobiota.pensoft.net/article/59132/},
	author = {Diagne, Christophe and Turbelin, Anna J. and Moodley, Desika and Novoa, Ana and Leroy, Boris and Angulo, Elena and Adamjy, Tasnime and Dia, Cheikh A.K.M. and Taheri, Ahmed and Tambo, Justice and Dobigny, Gauthier and Courchamp, Franck}
}
@article {8144,
	title = {Economic costs of invasive alien species across Europe},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {153 - 190},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.58196},
	url = {https://neobiota.pensoft.net/article/58196/},
	author = {Haubrock, Phillip J. and Turbelin, Anna J. and Cuthbert, Ross N. and Novoa, Ana and Taylor, Nigel G. and Angulo, Elena and Ballesteros-Mejia, Liliana and Bodey, Thomas W. and Capinha, C{\'e}sar and Diagne, Christophe and Essl, Franz and Golivets, Marina and Kirichenko, Natalia and Kourantidou, Melina and Leroy, Boris and Renault, David and Verbrugge, Laura and Courchamp, Franck}
}
@article {8653,
	title = {Economic costs of invasive alien species in the Mediterranean basin},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {427 - 458},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.5892610.3897/neobiota.67.58926.suppl110.3897/neobiota.67.58926.suppl2},
	url = {https://neobiota.pensoft.net/article/58926/},
	author = {Kourantidou, Melina and Cuthbert, Ross N. and Haubrock, Phillip J. and Novoa, Ana and Taylor, Nigel G. and Leroy, Boris and Capinha, C{\'e}sar and Renault, David and Angulo, Elena and Diagne, Christophe and Courchamp, Franck}
}
@proceedings {8068,
	title = {Establishing water sample protocols for radiocarbon analysis  at LAC-UFF, Brazil},
	year = {2021},
	month = {09/2021},
	pages = {1-8},
	abstract = {Since the establishment of the first radiocarbon accelerator mass spectrometry facility in Latin America in 2009, the Radiocarbon Laboratory team of Universidade Federal Fluminense (LAC-UFF) has worked to improve sample preparation protocols and increase the range of environmental matrices to be analyzed. We now present the preliminary results for DIC sample preparation protocols. The first validation tests include background evaluation with pMC value (0.35 {\textpm} 0.04) using bicarbonate dissolved in water. We also analyzed surface seawater resulting in pMC value (101.38 {\textpm} 0.38) and a groundwater previously dated from LEMA AMS-Laboratory with pMC value (12.30 {\textpm} 0.15).},
	issn = {0033-8222},
	doi = {10.1017/RDC.2021.1},
	url = {https://www.cambridge.org/core/product/identifier/S0033822221000011/type/journal_article},
	author = {Bragan{\c c}a, Daniela and Oliveira, Fabiana and Macario, Kita and Nunes, Vinicius and Muniz, Marcelo and Lamego, Fernando and Gwena{\"e}l Abril and Nepomuceno, Aguinaldo and Sol{\'\i}s, Corina and Rodr{\'\i}guez-Ceja, Mar{\'\i}a}
}
@article {8147,
	title = {Impacts of climate change on the Bay of Seine ecosystem: Forcing a spatio-temporal trophic model with predictions from an ecological niche model},
	journal = {Fisheries Oceanography},
	volume = {30},
	year = {2021},
	month = {Jan-09-2021},
	pages = {471 - 489},
	issn = {1054-6006},
	doi = {10.1111/fog.v30.510.1111/fog.12531},
	url = {https://onlinelibrary.wiley.com/toc/13652419/30/5},
	author = {Bourdaud, Pierre and Ben Rais Lasram, Frida and Araignous, Emma and Champagnat, Juliette and Grusd, Samantha and Halouani, Ghassen and Hattab, Tarek and Leroy, Boris and Nogues, Quentin and Raoux, Aurore and Safi, Georges and Nathalie Niquil}
}
@article {7854,
	title = {Marine artificial reefs, a meta-analysis of their design, objectives and effectiveness},
	journal = {Global Ecology and Conservation},
	year = {2021},
	month = {Jan-03-2021},
	pages = {e01538},
	issn = {23519894},
	doi = {10.1016/j.gecco.2021.e01538},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2351989421000883},
	author = {Vivier, Baptiste and Dauvin, Jean-Claude and Navon, Maxime and Anne-Marie Rusig and Isabelle Mussio and Francis Orvain and Boutouil, Mohamed and Pascal Claquin}
}
@article {7884,
	title = {Melatonin and osmoregulation in fish: A focus on Atlantic salmon Salmo salar smoltification},
	journal = {Journal of Neuroendocrinology},
	volume = {33},
	year = {2021},
	month = {Jan-03-2021},
	abstract = {Part of the life cycle of several fish species includes important salinity changes, as is the case for the sea bass (Dicentrarchus labrax) or the Atlantic salmon (Salmo salar).\&nbsp;Salmo\&nbsp;salar\&nbsp;juveniles migrate downstream from their spawning sites to reach seawater, where they grow and become sexually mature. The process of preparation enabling juveniles to migrate downstream and physiologically adapt to seawater is called smoltification. Daily and seasonal variations of photoperiod and temperature play a role in defining the timing of smoltification, which may take weeks to months, depending on the river length and latitude. Smoltification is characterised by a series of biochemical, physiological and behavioural changes within the neuroendocrine axis. This review discusses the current knowledge and gaps related to the neuroendocrine mechanisms that mediate the effects of light and temperature on smoltification. Studies performed in\&nbsp;S.\&nbsp;salar\&nbsp;and other salmonids, as well as in other species undergoing important salinity changes, are reviewed, and a particular emphasis is given to the pineal hormone melatonin and its possible role in osmoregulation. The daily and annual variations of plasma melatonin levels reflect corresponding changes in external photoperiod and temperature, which suggests that the hormonal time-keeper melatonin might contribute to controlling smoltification. Here, we review studies on (i) the impact of pinealectomy and/or melatonin administration on smoltification; (ii) melatonin interactions with hormones involved in osmoregulation (e.g., prolactin, growth hormone and cortisol); (iii) the presence of melatonin receptors in tissues involved in osmoregulation; and (iv) the impacts of salinity changes on melatonin receptors and circulating melatonin levels. Altogether, these studies show evidence indicating that melatonin interacts with the neuroendocrine pathways controlling smoltification, although more information is needed to clearly decipher its mechanisms of action.},
	issn = {0953-8194},
	doi = { https://doi.org/10.1111/jne.12955},
	url = {https://onlinelibrary.wiley.com/toc/13652826/33/3},
	author = {Nisembaum, Laura Gabriela and Martin, Patrick and Lecomte, Fr{\'e}d{\'e}ric and Falc{\'o}n, Jack}
}
@article {8837,
	title = {The Merits of Loop Analysis for the Qualitative Modeling of Social-Ecological Systems in Presence of Offshore Wind Farms},
	journal = {Frontiers in Ecology and Evolution},
	volume = {9},
	year = {2021},
	month = {May-02-2022},
	doi = {10.3389/fevo.2021.635798},
	url = {https://www.frontiersin.org/articles/10.3389/fevo.2021.635798/full},
	author = {Nathalie Niquil and Scotti, Marco and Fofack-Garcia, Rhoda and Haraldsson, Matilda and Thermes, Maud and Raoux, Aurore and Le Loc{\textquoteright}h, Francois and Maz{\'e}, Camille}
}
@article {9730,
	title = {Not Frozen in the Ice: Large and Dynamic Rearrangements in the Mitochondrial Genomes of the Antarctic Fish},
	journal = {Genome Biology and Evolution},
	volume = {13},
	year = {2021},
	month = {2021 Mar 01},
	abstract = {<p>The vertebrate mitochondrial genomes generally present a typical gene order. Exceptions are uncommon and important to study the genetic mechanisms of gene order rearrangements and their consequences on phylogenetic output and mitochondrial function. Antarctic notothenioid fish carry some peculiar rearrangements of the mitochondrial gene order. In this first systematic study of 28 species, we analyzed known and undescribed mitochondrial genome rearrangements for a total of eight different gene orders within the notothenioid fish. Our reconstructions suggest that transpositions, duplications, and inversion of multiple genes are the most likely mechanisms of rearrangement in notothenioid mitochondrial genomes. In Trematominae, we documented an extremely rare inversion of a large genomic segment of 5,300 bp that partially affected the gene compositional bias but not the phylogenetic output. The genomic region delimited by nad5 and trnF, close to the area of the Control Region, was identified as the hot spot of variation in Antarctic fish mitochondrial genomes. Analyzing the sequence of several intergenic spacers and mapping the arrangements on a newly generated phylogeny showed that the entire history of the Antarctic notothenioids is characterized by multiple, relatively rapid, events of disruption of the gene order. We hypothesized that a pre-existing genomic flexibility of the ancestor of the Antarctic notothenioids may have generated a precondition for gene order rearrangement, and the pressure of purifying selection could have worked for a rapid restoration of the mitochondrial functionality and compactness after each event of rearrangement.</p>
},
	keywords = {Animals, Antarctic Regions, Evolution, Molecular, Fishes, Freezing, Gene Order, Gene Rearrangement, Genes, Mitochondrial, Genome, Mitochondrial, Genomics, Ice, Models, Genetic, Phylogeny, Vertebrates},
	issn = {1759-6653},
	doi = {10.1093/gbe/evab017},
	url = {https://doi.org/10.1093/gbe/evab017},
	author = {Papetti, Chiara and Babbucci, Massimiliano and Dettai, Agn{\`e}s and Basso, Andrea and Lucassen, Magnus and Harms, Lars and C{\'e}line Bonillo and Heindler, Franz Maximilian and Patarnello, Tomaso and Negrisolo, Enrico}
}
@article {8059,
	title = {Pelagic habitats under the MSFD D1: scientific advice of policy relevance : recommendations to frame problems and solutions for the pelagic habitats{\textquoteright} assessment.},
	year = {2021},
	institution = {Publications Office of the European Union},
	abstract = {Pelagic habitats are a policy priority below Descriptor 1 (Biodiversity) of the Marine Strategy Framework Directive (MSFD). They are addressed under the D1C6 criterion, stating {\textquotedblleft}the condition of the habitat type, including its biotic and abiotic structure and its functions{\textellipsis}, is not adversely affected due to anthropogenic pressures{\textquotedblright}. The evaluation of pelagic habitats status is challenged by the functional and structural characteristics of pelagic habitat diversity and processes. To date, pelagic habitats assessments are lacking in common criteria and methodologies that characterize the habitat while accounting for the effects of anthropogenic pressures to achieve the Good Environmental Status (GES). It is therefore necessary to prioritise communication between scientific and policy communities and frame pelagic research to agree on common methods and approaches at regional or EU scale. This is key for achieving harmonised and comparable pelagic assessments for the MSFD. This report summarizes the outcomes on the assessment workflow of pelagic habitats of the JRC {\textquotedblleft}MSFD pelagic habitats{\textquotedblright} workshop (9th and 10th March 2021), and the need for coordinated evaluations of the scientific challenges of policy relevance. Recommendations on the MSFD implementation of D1C6, that were generated from the experts during the workshop, will be communicated to the MSFD policy groups and the EU Member States competent authorities to support future harmonised assessment of pelagic habitats.},
	doi = {10.2760/081368},
	url = {https://data.europa.eu/doi/10.2760/081368},
	author = {Magliozzi, Chiara and Druon, Jean-Noel and Palialexis, Andreas and Aguzzi, Laura and Alexande, Brittany and Antoniadis, Konstantinos and Artigas, Luis Felipe and Azzellino, Arianna and Bisinicu, Elena and Boicenco, Laura and Bojanic, Natalia and Borrello, Patrizia and Boschetti, Simona and Carmo, Vanda and Cervantes, Pablo and Coll, Marta and Curmi, Marta and Del Amo, Yolanda and Dutz, Joerg and Franc{\'e}, Janja and Garces, Esther and Gea, Guillermo and Giannakourou, Antonia and Goberville, Eric and Goffart, Anne and Gomes Pereira, Jose Nuno and Gonzalez-Quiros, Rafael and Gorokhova, Elena and Guglielmo, Letterio and Pierre H{\'e}laou{\"e}t and Henriques, Filipe and Heyden, Birgit and Jaanus, Andres and Jakobsen, Hans and Johansen, Marie and Jurgensone, Iveta and Korpinen, Samuli and Kremp, Anke and Kuosa, Harri and Labayle, Lucille and Lazar, Luminita and Abigail McQuatters-Gollop and Nincevic, Zivana and Pagou, Popi and Penna, Antonella and Pettersson, Karin and Ruiter, Hans and Skejic, Sanda and Spada, Emanuela and Spinu, Alina and Tew-Kai, Emilie and Totti, Cecilia and Tunesi, Leonardo and Vadrucci, Maria Rosaria and Valavanis, Vasilis and Varkitzi, Ioanna and Vasiliades, Lavrendios and Veldeki, Georgia and Vidjak, Olja and Vincent, Doroth{\'e}e and Zervoudaki, Soultana}
}
@article {8430,
	title = {Pituitary Hormones mRNA Abundance in the Mediterranean Sea Bass Dicentrarchus labrax: Seasonal Rhythms, Effects of Melatonin and Water Salinity},
	journal = {Frontiers in Physiology},
	volume = {12},
	year = {2021},
	month = {12/15/2021},
	pages = {774975},
	type = {Research article},
	abstract = {In fish, most hormonal productions of the pituitary gland display daily and/or seasonal<br>
rhythmic patterns under control by upstream regulators, including internal biological<br>
clocks. The pineal hormone melatonin, one main output of the clocks, acts at different<br>
levels of the neuroendocrine axis. Melatonin rhythmic production is synchronized mainly<br>
by photoperiod and temperature. Here we aimed at better understanding the role<br>
melatonin plays in regulating the pituitary hormonal productions in a species of scientific<br>
and economical interest, the euryhaline European sea bass Dicentrarchus labrax. We<br>
investigated the seasonal variations in mRNA abundance of pituitary hormones in two<br>
groups of fish raised one in sea water (SW fish), and one in brackish water (BW fish). The<br>
mRNA abundance of three melatonin receptors was also studied in the SW fish. Finally,<br>
we investigated the in vitro effects of melatonin or analogs on the mRNA abundance of<br>
pituitary hormones at two times of the year and after adaptation to different salinities.<br>
We found that (1) the reproductive hormones displayed similar mRNA seasonal profiles<br>
regardless of the fish origin, while (2) the other hormones exhibited different patterns<br>
in the SW vs. the BW fish. (3) The melatonin receptors mRNA abundance displayed<br>
seasonal variations in the SW fish. (4) Melatonin affected mRNA abundance of most<br>
of the pituitary hormones in vitro; (5) the responses to melatonin depended on its<br>
concentration, the month investigated and the salinity at which the fish were previously<br>
adapted. Our results suggest that the productions of the pituitary are a response to<br>
multiple factors from internal and external origin including melatonin. The variety of the<br>
responses described might reflect a high plasticity of the pituitary in a fish that faces<br>
multiple external conditions along its life characterized by marked daily and seasonal<br>
changes in photoperiod, temperature and salinity.},
	keywords = {annual variations, hormones, melatonin, photoperiod, pituitary, salinity, sea bass},
	doi = {10.3389/fphys.2021.774975},
	url = {https://www.frontiersin.org/articles/10.3389/fphys.2021.774975/full?\&utm_source=Email_to_authors_\&utm_medium=Email\&utm_content=T1_11.5e1_author\&utm_campaign=Email_publication\&field=\&journalName=Frontiers_in_Physiology\&id=774975},
	author = {Jack Falcon},
	editor = {Maria-Jesus Herrero and Laura-Gabriela Nisembaum}
}
@article {8389,
	title = {The rise and fall of the ancient northern pike master sex-determining gene},
	journal = {eLife},
	volume = {10},
	year = {2021},
	month = {Apr-01-2023},
	doi = {10.7554/eLife.62858},
	url = {https://elifesciences.org/articles/62858},
	author = {Pan, Qiaowei and Feron, Romain and Jouanno, Elodie and Darras, Hugo and Herpin, Amaury and Koop, Ben and Rondeau, Eric and Goetz, Frederick W and Larson, Wesley A and Bernatchez, Louis and Tringali, Mike and Curran, Stephen S and Saillant, Eric and Denys, Ga{\"e}l and von Hippel, Frank A and Chen, Songlin and L{\'o}pez, J Andr{\'e}s and Verreycken, Hugo and Ocalewicz, Konrad and Guyomard, Rene and Eche, Camille and Lluch, Jerome and Roques, Celine and Hu, Hongxia and Tabor, Roger and DeHaan, Patrick and Nichols, Krista M and Journot, Laurent and Parrinello, Hugues and Klopp, Christophe and Interesova, Elena A and Trifonov, Vladimir and Schartl, Manfred and Postlethwait, John and Guiguen, Yann}
}
@article {8150,
	title = {Seasonal Variations in the Biodiversity, Ecological Strategy, and Specialization of Diatoms and Copepods in a Coastal System With Phaeocystis Blooms: The Key Role of Trait Trade-Offs},
	journal = {Frontiers in Marine Science},
	volume = {8},
	year = {2021},
	month = {09/2021},
	pages = {1178},
	abstract = {Although eutrophication induced by anthropogenic nutrient enrichment is a driver of shifts in community composition and eventually a threat to marine biodiversity, the causes and consequences on ecosystem functioning remain greatly unknown. In this study, by applying a trait-based approach and measuring niche breadth of diatoms and copepods, the drivers and underlying mechanisms of the seasonal species succession of these ecological communities in a coastal system dominated in spring by\&nbsp;Phaeocystis\&nbsp;blooms were explored. It is suggested that the seasonal succession of diatoms and copepods is the result of several trade-offs among functional traits that are controlled by the seasonal abiotic and biotic pressure encountered by the plankton communities. The results of this study highlight that a trade-off between competition and predator, i.e., weak competitors are better protected against predation, plays an important role in promoting plankton species richness and triggers the\&nbsp;Phaeocystis\&nbsp;bloom. As often observed in eutrophicated ecosystems, only the biotic homogenization of the copepod community and the shift in the diet of copepods toward\&nbsp;Phaeocystis\&nbsp;detrital materials have been detected during the\&nbsp;Phaeocystis\&nbsp;bloom. The diatom and copepod communities respond synchronously to fluctuating resources and biotic conditions by successively selecting species with specific traits. This study confirms the key role of competition and predation in controlling annual plankton succession.},
	issn = {2296-7745},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2021.656300/full},
	author = {Breton, Elsa and Christaki, Urania and Benoit Sautour and Demonio, Oscar and Skouroliakou, Dimitra-Ioli and Gr{\'e}gory Beaugrand and Seuront, Laurent and Kl{\'e}parski, Lo{\"\i}ck and Poquet, Adrien and Nowaczyk, Antoine and Muriel Crouvoisier and Ferreira, Sophie and Pecqueur, David and Salmeron, Christophe and Brylinski, Jean-Michel and Lheureux, Arnaud and Goberville, Eric}
}
@article {9176,
	title = {Short communication: Amphidromous goby postlarvae (penja) migration seasons and fisheries in West Sulawesi, Indonesia},
	journal = {Biodiversitas Journal of Biological Diversity},
	volume = {23},
	year = {2021},
	month = {Jan-12-2022},
	issn = {1412-033X},
	doi = {10.13057/biodiv/d230138},
	url = {https://smujo.id/biodiv/article/view/9789},
	author = {Nurjirana, Nurjirana and Burhanuddin, Andi I and Philippe Keith and Haris, Abdul and Afrisal, Muhammad}
}
@article {8702,
	title = {Whale depredation in the South Georgia Patagonian toothfish (Dissostichus eleginoides ) fishery in the South Atlantic: a comparison of estimation methods},
	journal = {ICES Journal of Marine Science},
	volume = {78},
	year = {2021},
	month = {Mar-11-2023},
	pages = {3817 - 3833},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsab212},
	url = {https://academic.oup.com/icesjms/article/78/10/3817/6444887},
	author = {Earl, Timothy and MacLeod, Eleanor and S{\"o}ffker, Marta and Gasco, N and Massiot-Granier, F{\'e}lix and Tixier, Paul and Darby, Christopher},
	editor = {Northridge, Simon}
}
@article {8701,
	title = {Whale depredation in the South Georgia Patagonian toothfish (Dissostichus eleginoides ) fishery in the South Atlantic: a comparison of estimation methods},
	journal = {ICES Journal of Marine Science},
	volume = {78},
	year = {2021},
	month = {Mar-11-2023},
	pages = {3817 - 3833},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsab212},
	url = {https://academic.oup.com/icesjms/article/78/10/3817/6444887},
	author = {Earl, Timothy and MacLeod, Eleanor and S{\"o}ffker, Marta and Nicolas Gasco and Massiot-Granier, F{\'e}lix and Tixier, Paul and Darby, Christopher},
	editor = {Northridge, Simon}
}
@article {7172,
	title = {Benthic ecoregionalization based on echinoid fauna of the Southern Ocean supports current proposals of Antarctic Marine Protected Areas under IPCC scenarios of climate change},
	journal = {Global Change Biology},
	volume = {26},
	year = {2020},
	month = {Jan-04-2020},
	pages = {2161 - 2180},
	issn = {1354-1013},
	doi = {10.1111/gcb.v26.410.1111/gcb.14988},
	url = {https://onlinelibrary.wiley.com/toc/13652486/26/4},
	author = {Fabri-Ruiz, Salom{\'e} and Danis, Bruno and Navarro, Nicolas and Koubbi, Philippe and Laffont, R{\'e}mi and Sauc{\`e}de, Thomas}
}
@article {7587,
	title = {Comparison of approaches for incorporating depredation on fisheries catches into Ecopath},
	journal = {ICES Journal of Marine Science},
	year = {2020},
	month = {Jan-11-2022},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsaa219},
	url = {https://academic.oup.com/icesjms/advance-article/doi/10.1093/icesjms/fsaa219/6000671},
	author = {Clavareau, Lyndsay and Marzloff, Martin P and Trenkel, Verena M and Bulman, Catherine M and Gourguet, Sophie and Le Gallic, Bertrand and Hernvann, Pierre-Yves and Clara P{\'e}ron and Nicolas Gasco and Faure, Johanna and Tixier, Paul},
	editor = {Northridge, Simon}
}
@article {7534,
	title = {Dietary taurine improves vision in different age gilthead sea bream (Sparus aurata) larvae potentially contributing to increased prey hunting success and growth},
	journal = {Aquaculture},
	year = {2020},
	month = {Jan-11-2020},
	pages = {736129},
	issn = {00448486},
	doi = {10.1016/j.aquaculture.2020.736129},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0044848620338357},
	author = {Gaon, A. and Nixon, O. and Tandler, A. and Falcon, J. and Besseau, L. and Escande, M. and El Sadin, S. and Allon, G. and Koven, W.}
}
@article {7046,
	title = {Disentangling the taxonomy of the subfamily Rasborinae (Cypriniformes, Danionidae) in Sundaland using DNA barcodes},
	journal = {Scientific Reports},
	volume = {10},
	year = {2020},
	month = {Jan-12-2020},
	abstract = {iodiversity hotspots have provided useful geographic proxies for conservation efforts. Delineated from a few groups of animals and plants, biodiversity hotspots do not reflect the conservation status of freshwater fishes. With hundreds of new species described on a yearly basis, fishes constitute the most poorly known group of vertebrates. This situation urges for an acceleration of the fish species inventory through fast and reliable molecular tools such as DNA barcoding. The present study focuses on the freshwater fishes diversity in the Sundaland biodiversity hotspot in Southeast Asia. Recent studies evidenced large taxonomic gaps as well as unexpectedly high levels of cryptic diversity, particularly so in the islands of Java and Bali. The Cypriniformes genera Rasbora and Nemacheilus account for most of the endemic species in Java and Bali, however their taxonomy is plagued by confusion about species identity and distribution. This study examines the taxonomic status of the Rasbora and Nemacheilus species in Java, Bali and Lombok islands through DNA barcodes, with the objective to resolve taxonomic confusion and identify trends in genetic diversity that can be further used for conservation matters. Several species delimitation methods based on DNA sequences were used and confirmed the status of most species, however several cases of taxonomic confusion and two new taxa are detected. Mitochondrial sequences argue that most species range distributions currently reported in the literature are inflated due to erroneous population assignments to the species level, and further highlight the sensitive conservation status of most Rasbora and Nemacheilus species on the islands of Java, Bali and Lombok.},
	keywords = {Conservation genetics, Cryptic diversity, Population fragmentation, Southeast Asia, taxonomy},
	doi = {10.1038/s41598-020-59544-9},
	url = {http://www.nature.com/articles/s41598-020-59544-9},
	author = {Sholihah, Arni and Delrieu-Trottin, Erwan and Sukmono, Tedjo and Dahruddin, Hadi and Risdawati, Renny and Elvyra, Roza and Wibowo, Arif and Kustiati, Kustiati and Busson, Frederic and Sauri, Sopian and Nurhaman, Ujang and Dounias, Edmond and Zein, Muhamad Syamsul Arifin and Fitriana, Yuli and Utama, Ilham Vemendra and Muchlisin, Zainal Abidin and Agn{\`e}se, Jean-Fran{\c c}ois and Hanner, Robert and Wowor, Daisy and Steinke, Dirk and Philippe Keith and R{\"u}ber, Lukas and Hubert, Nicolas}
}
@article {8460,
	title = {Diversit{\'e} des assemblages d{\textquoteright}araign{\'e}es dans les {\'e}cosyst{\`e}mes savanicoles des Plateaux Bat{\'e}k{\'e}, Haut-Ogoou{\'e}, Gabon},
	journal = {Afrique Science},
	volume = {16},
	year = {2020},
	pages = {106-117},
	author = {Alban-Michel NGU{\'E}MA NGU{\'E}MA and Assane NDIAYE and Lynda Chancelia NKOGHE NKOGHE and Jacques Fran{\c c}ois MAVOUNGOU1 and Fr{\'e}d{\'e}ric Ysnel}
}
@article {7111,
	title = {Effects of a temperature rise on Atlantic salmon, Salmo salar, melatonin and thyroid hormones during smoltification},
	journal = {Journal of Comparative Physiology B},
	volume = {190},
	year = {2020},
	month = {09/2020},
	pages = {731-748},
	type = {ACL},
	abstract = {Smoltification prepares juvenile Atlantic salmon (Salmo salar) for downstream migration. Dramatic changes characterize this crucial event in the fish life cycle, including gills{\textquoteright} Na+/K+-ATPase activity (NKA) and plasma hormonal levels. The triggering of smoltification relies on photoperiod and is modulated by temperature. Both provide reliable information, to which fish adapted for thousands of years, that allows deciphering daily and calendar time. Here we studied the impact of different photoperiod (natural, sustained winter solstice) and temperature (natural, ~ +4{\textdegree}C) combinations, on gills{\textquoteright} NKA, plasma free triiodothyronine (T3), thyroxine (T4) and melatonin (MEL; the time-keeping hormone), throughout smoltification. We also studied the impact of temperature history on pineal gland MEL production in vitro. The spring increase in gills{\textquoteright} NKA was less pronounced in smolts kept under sustained winter photoperiod and/or elevated temperature. Plasma thyroid hormones levels displayed day-night variations, which were affected by elevated temperature, either independently from photoperiod (decrease in T3 levels) or under natural photoperiod exclusively (increase in T4 nocturnal levels). Nocturnal MEL secretion was potentiated by the elevated temperature, which also altered MEL profile under sustained winter photoperiod. Temperature also affected pineal MEL production in vitro, a response that depended on previous environmental acclimation of the organ. The results support the view that the salmon pineal is a photoperiod and temperature sensor, highlight the complexity of the interaction of these environmental factors on <em>S. salar</em> endocrine system, and suggest that climate change might compromise salmon{\textquoteright}s time {\textquotedblleft}deciphering{\textquotedblright} and processes such as smoltification, downstream migration and seawater residence.},
	keywords = {Atlantic salmon, melatonin, smoltification, Temperature, thyroid hormones},
	doi = {10.1007/s00360-020-01304-2},
	url = {https://link.springer.com/article/10.1007/s00360-020-01304-2},
	author = {Nisembaum, Laura Gabriela and Martin, Patrick and Fuent{\`e}s, Michael and Besseau, Laurence and Magnanou, Elodie and McCormick, Stephen D and Jack Falcon}
}
@article {7193,
	title = {Effects of a temperature rise on melatonin and thyroid hormones during smoltification of Atlantic salmon, Salmo salar},
	journal = { J Comp Physiol B},
	year = {2020},
	month = {03 September 202},
	type = {Journal Article},
	abstract = {Smoltification prepares juvenile Atlantic salmon (Salmo salar) for downstream migration. Dramatic changes characterize this crucial event in the salmon{\textquoteright}s life cycle, including increased gill Na+/K+-ATPase activity (NKA) and plasma hormone levels. The triggering of smoltification relies on photoperiod and is modulated by temperature. Both provide reliable information, to which fish have adapted for thousands of years, that allows deciphering daily and calendar time. Here we studied the impact of different photoperiod (natural, sustained winter solstice) and temperature (natural, ~ + 4{\textdegree} C) combinations, on gill NKA, plasma free triiodothyronine (T3) and thyroxine (T4), and melatonin (MEL; the time-keeping hormone), throughout smoltification. We also studied the impact of temperature history on pineal gland MEL production in vitro. The spring increase in gill NKA was less pronounced in smolts kept under sustained winter photoperiod and/or elevated temperature. Plasma thyroid hormone levels displayed day{\textendash}night variations, which were affected by elevated temperature, either independently from photoperiod (decrease in T3 levels) or under natural photoperiod exclusively (increase in T4 nocturnal levels). Nocturnal MEL secretion was potentiated by the elevated temperature, which also altered the\&nbsp;MEL profile under sustained winter photoperiod. Temperature also affected pineal MEL production in vitro, a response that depended on previous environmental acclimation of the organ. The results support the view that the salmon pineal is a photoperiod and temperature sensor, highlight the complexity of the interaction of these environmental factors on the endocrine system of S. salar, and indicate that climate change might compromise salmon{\textquoteright}s time {\textquotedblleft}deciphering{\textquotedblright} during smoltification, downstream migration and seawater residence.},
	keywords = {Atlantic salmon, melatonin, Temperature, thyroid hormones},
	doi = {10.1007/s00360-020-01304-2},
	url = {https://link.springer.com/article/10.1007\%2Fs00360-020-01304-2},
	author = {Nisembaum, Laura Gabriela and Martin, Patrick and Fuent{\`e}s, M and Besseau, Laurence and Magnanou, Elodie and McCormick, Stephen and Falc{\'o}n, Jack}
}
@article {7042,
	title = {Exploring community assembly among Javanese and Balinese freshwater shrimps (Atyidae, Palaemonidae) through DNA barcodes},
	journal = {Hydrobiologia},
	volume = {847},
	year = {2020},
	month = {Jan-01-2020},
	pages = {647 - 663},
	abstract = {Species proliferate through evolutionary mechanisms but coexist through ecological dynamics. As such, it might be expected that mechanisms of speciation and species maintenance jointly influence the settlement of ecological communities, a process called community assembly. Disentangling the relative contribution of evolutionary and ecological dynamics might be a difficult task, particularly so for the tropical biotas due to their extreme diversity and large knowledge gaps. Here, we explore genetic diversity and distribution of 23 freshwater shrimp species of the genera Caridina and Macrobrachium in Sundaland to examine patterns of species co-occurrence based on 1583 observations across 19 sites in Java and Bali islands. DNA-based species delimitation methods applied to 204 cytochrome oxidase I sequences detected 30 operational taxonomic units and a few cases of deep intraspecific divergence. Species co-occurrence and phylogenetic community structure show no departure from expectations under a random distribution of species in landscapes and support a lottery model of community assembly. Species age estimates expand beyond the geological settlement of Sundaland, suggesting that species proliferation and community assembly are driven by mechanisms acting at distinct spatial and temporal scales.},
	keywords = {Caridina, Dispersa, Lottery model, Macrobrachium, Phylogenetic community structure, Species delimitation},
	issn = {0018-8158},
	doi = {10.1007/s10750-019-04127-7},
	url = {http://link.springer.com/10.1007/s10750-019-04127-7},
	author = {Hernawati, Rena and Nurhaman, Ujang and Busson, Frederic and Suryobroto, Bambang and Hanner, Robert and Philippe Keith and Wowor, Daisy and Hubert, Nicolas}
}
@article {7089,
	title = {How to model social-ecological systems? {\textendash} A case study on the effects of a future offshore wind farm on the local society and ecosystem, and whether social compensation matters},
	journal = {Marine Policy},
	volume = {119},
	year = {2020},
	abstract = {Models of social-ecological systems (SES) are acknowledged as an important tool to understand human-nature relations. However, many SES models fail to integrate adequate information from both the human and ecological subsystems. With an example model of a future Offshore Wind Farm development and its effects on both the ecosystem and local human population, we illustrate a method facilitating a {\textquotedblleft}balanced{\textquotedblright} SES model, in terms of including information from both subsystems. We use qualitative mathematical modeling, which allows to quickly analyze the structure and dynamics of a system without including quantitative data, and therefore to compare alternative system structures based on different understandings of how the system works. By including similar number of system variables in the two subsystems, we balanced the complexity between them. Our analyses show that this complexity is important in order to predict indirect and sometimes counterintuitive effects. We also highlight some conceptually important questions concerning social compensations during developmental projects in general, and wind farms in particular. Our results suggest that the more project holders get involved in various manner in the local socio-ecological system, the more society will benefit as a whole. Increased involvement through e.g. new projects or job-opportunities around the windfarm has the capacity to offset the negative effects of the windfarm on the local community. These benefits are enhanced when there is an overall acceptance and appropriation of the project. We suggest this method as a tool to support the decision-making process and to facilitate discussions between stakeholders, especially among local communities. {\textcopyright} The Authors},
	keywords = {Acceptance, comparative study, Complexity, Decision making, development project, Eastern English channel, environmental impact assessment, future prospect, local participation, Network, numerical model, offshore structure, participatory approach, Perception, Qualitative modeling, quantitative analysis, Renewable energy, social impact assessment, stakeholder, wind farm},
	issn = {0308597X (ISSN)},
	doi = {10.1016/j.marpol.2020.104031},
	url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85085318224\&doi=10.1016\%2fj.marpol.2020.104031\&partnerID=40\&md5=9e69340af6d591878af0f943cd4bc347},
	author = {Haraldsson, M. and Raoux, A. and Riera, F. and Hay, J. and Dambacher, J.M. and Nathalie Niquil}
}
@article {7035,
	title = {Identification and structural characterization of the factors involved in vitellogenesis and its regulation in the African Osteoglossiforme of aquacultural interest Heterotis niloticus (Cuvier, 1829)},
	journal = {General and Comparative Endocrinology},
	year = {2020},
	month = {Jan-06-2020},
	pages = {113532},
	issn = {00166480},
	doi = {10.1016/j.ygcen.2020.113532},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016648020302859},
	author = {Daniel Koua, N{\textquoteright}Zi and Jesus Nu{\~n}ez-Rodriguez and Orjuela, Julie and C{\'e}line Zatylny-Gaudin and Dubos, Marie-Pierre and Bernay, Beno{\^\i}t and Pontin, Julien and Corre, Erwan and Henry, Jo{\"e}l}
}
@article {6578,
	title = {Influence of the physiological condition of bivalve recruits on their post-settlement dispersal potential},
	journal = {Marine Ecology Progress Series},
	volume = {636},
	year = {2020},
	pages = {77 - 89},
	abstract = {Secondary dispersal (= migration) of bivalves occurs after metamorphosis and is a key recruitment process that can radically change patterns of primary settlement. An example of secondary dispersal is active migration behavior of bivalve recruits such as in bysso-pelagic drift. We hypothesize that these active migrations represent an energy cost for recruits and that the ability to actively migrate will depend upon the recruit{\textlnot}{\'\i}s physiological profile (quantity and quality of energy reserves). In lab experiments, we hatched 4 batches of recruits of\&nbsp;Venus verrucosa\&nbsp;with different physiological profiles by varying rearing temperature and diet composition. We then introduced these recruits into a fall velocity tube (5 m height) to estimate their vertical fall velocity as a proxy of their dispersal potential: slower fall velocity implies enhanced dispersal potential. We also compared alive vs. passive (dead) recruits to assess behavioral differences. Fall velocity increased logarithmically with recruit volume for each treatment, and no differences between active and passive individuals were observed for batches reared at 20{\textdegree}C with a mixture of\&nbsp;Tisochrysis lutea\&nbsp;and\&nbsp;Chaetoceros gracilis. By contrast, active recruits in 2 other treatments (T. lutea\&nbsp;at 20{\textdegree}C and a mix of\&nbsp;C. gracilis\&nbsp;and\&nbsp;T. lutea\&nbsp;at 15{\textdegree}C) significantly decreased their fall velocity regardless of their volume. Moreover, the ability of recruits to control their fall velocity by their behavior was correlated with triglyceride content. Recruits with the highest energy reserves had the greatest capacity to decrease their fall velocity, which suggests a major role of physiological conditions on potential secondary dispersal. We also used a benthic flume to test the substrate selection ability of recruits depending on their physiological profile and found no differences between physiologically different batches. However,\&nbsp;V. verrucosa\&nbsp;recruits preferred fine sediments, unlike adults, which live mainly in coarse sediment habitats; such difference in substrate preference suggests potential secondary migrations between nursery and adult areas.},
	keywords = {Behavior, Bivalves recruits, Energetic reserves, Physiology, secondary migrations, Venus verrucosa},
	issn = {0171-8630},
	doi = {10.3354/meps13223},
	url = {https://www.int-res.com/abstracts/meps/v636/p77-89},
	author = {Martin For{\^e}t and Fr{\'e}d{\'e}ric Olivier and Miner, P and Gesche Winkler and Nadalini, J-B and R{\'e}jean Tremblay}
}
@article {8140,
	title = {InvaCost, a public database of the economic costs of biological invasions worldwideAbstract},
	journal = {Scientific Data},
	volume = {7},
	year = {2020},
	month = {Jan-12-2020},
	doi = {10.1038/s41597-020-00586-z},
	url = {http://www.nature.com/articles/s41597-020-00586-z},
	author = {Diagne, C. and Leroy, B. and Gozlan, R. E. and Vaissi{\`e}re, A.-C. and Assailly, C. and Nuninger, L. and Roiz, D. and Jourdain, F. and Jari{\'c}, I. and Courchamp, F.}
}
@article {8652,
	title = {InvaCost, a public database of the economic costs of biological invasions worldwide},
	journal = {Scientific Data},
	volume = {7},
	year = {2020},
	month = {Jan-12-2020},
	doi = {10.1038/s41597-020-00586-z},
	url = {https://www.nature.com/articles/s41597-020-00586-z},
	author = {Diagne, C. and Leroy, B. and Gozlan, R. E. and Vaissi{\`e}re, A.-C. and Assailly, C. and Nuninger, L. and Roiz, D. and Jourdain, F. and Jari{\'c}, I. and Courchamp, F.}
}
@article {7091,
	title = {Isotopic analyses, a good tool to validate models in the context of Marine Renewable Energy development and cumulative impacts},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {237},
	year = {2020},
	abstract = {As part of the energy transition, the French government is planning Offshore Wind Farm (OWF) constructions in the next decades. An integrated ecosystem approach of two future OWF sites of the Eastern English Channel (Courseulles-sur-mer and Dieppe-Le Tr{\'e}port) was developed to model the marine ecosystems before the OWF implementation. Such ecosystem models allow simulating the possible reef and reserve effects associated to the presence of the farm, and to character the overall changes in the food-web functioning. This holistic view of OWF effects could be replicated on other sites and form the basis of an ecosystem based management of marine renewable energies. However, to use these models for management purpose, they need to be validated. In order to do so, stable isotope ratios of nitrogen were used for determining the accuracy of the effective trophic levels computed in these two models. Results showed that trophic levels estimated by the two models were consistent with the trophic levels estimated by the independent isotopic data. In the context of OWF development and cumulative impacts analysis, this step of validation of the models is essential for developing their use by management actors and policy makers. {\textcopyright} 2020 Elsevier Ltd},
	keywords = {alternative energy, detection method, Dieppe, Ecopath with Ecosim, ecosystem approach, English Channel, food web, France, Isotopic nitrogen analysis, marine ecosystem, model validation, Normandie, Offshore wind farm, policy making, Seine Maritime, trophic level, wind farm},
	issn = {02727714 (ISSN)},
	doi = {10.1016/j.ecss.2020.106690},
	author = {Raoux, A. and Pezy, J.-P. and Ernande, B. and Nathalie Niquil and Dauvin, J.-C. and Granger{\'e}, K.}
}
@article {7470,
	title = {Large geographic variability in the resistance of corals to thermal stress},
	journal = {Global Ecology and Biogeography},
	year = {2020},
	month = {May-10-2020},
	abstract = {<strong>Aim</strong>: Predictions for the future of coral reefs are largely based on thermal exposure and poorly account for potential geographic variation in biological sensitivity to thermal stress. Without accounting for complex sensitivity responses, simple climate exposure models and associated predictions may lead to poor estimates of future coral survival and lead to policies that fail to identify and implement the most appropriate interventions. To begin filling this gap, we evaluated a number of attributes of coral taxa and communities that are predicted to influence coral resistance to thermal stress over a large geographic range.<br>
<strong>Location</strong>:\&nbsp;Western Indo-Pacific and Central Indo-Pacific Ocean Realms.<br>
<strong>Major taxa studied</strong>:\&nbsp;Zooxanthellate Scleractinia {\textendash} hard corals.<br>
<strong>Methods</strong>:\&nbsp;We evaluated the geographic variability of coral resistance to thermal stress as the ratio of thermal exposure and sensitivity in 12 countries during the 2016 global-bleaching event. Thermal exposure was estimated by two metrics: (a) historical excess summer heat (cumulative thermal anomaly, CTA), and (b) a multivariate index of sea-surface temperature (SST), light, and water flow (climate exposure, CE). Sensitivity was estimated for 226 sites using coordinated bleaching observations and underwater surveys of coral communities. We then evaluated coral resistance to thermal stress using 48 generalized linear mixed models (GLMMs) to compare the potential influences of geography, historical SST variation, coral cover and coral richness.<br>
<strong>Results</strong>:\&nbsp;Geographic faunal provinces and ecoregions were the strongest predictors of coral resistance to thermal stress, with sites in the Australian, Indonesian and Fiji-Caroline Islands coral provinces having higher resistance to thermal stress than Africa-India and Japan-Vietnam provinces. Ecoregions also showed strong gradients in resistance with highest resistance to thermal stress in the western Pacific and Coral Triangle and lower resistance in the surrounding ecoregions. A more detailed evaluation of Coral Triangle and non-Coral Triangle sites found higher resistance to thermal stress within the Coral Triangle, associated with\&nbsp;c.\&nbsp;2.5 times more recent historical thermal anomalies and more centralized, warmer, and cool-water skew SST distributions, than in non-Coral Triangle sites. Our findings identify the importance of environmental history and geographic context in future predictions of bleaching, and identify some potential drivers of coral resistance to thermal stress.<br>
<strong>Main conclusions</strong>:\&nbsp;Simple threshold models of heat stress and coral acclimation are commonly used to predict the future of coral reefs. Here and elsewhere we show that large-scale responses of coral communities to heat stress are geographically variable and associated with differential environmental stresses and histories.},
	issn = {1466-822X},
	doi = {10.1111/geb.13191},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/geb.13191},
	author = {McClanahan, Timothy R. and Maina, Joseph M. and Darling, Emily S. and Mireille M.M. Guillaume and Muthiga, Nyawira A. and D{\textquoteright}agata, Stephanie and Leblond, Julien and Arthur, Rohan and Jupiter, Stacy D. and Wilson, Shaun K. and Mangubhai, Sangeeta and Ussi, Ali M. and Humphries, Austin T. and Patankar, Vardhan and Shedrawi, George and Julius, Pagu and Ndagala, January and Grimsditch, Gabriel}
}
@article {8141,
	title = {An open-source framework to model present and future marine species distributions at local scale},
	journal = {Ecological Informatics},
	volume = {59},
	year = {2020},
	month = {Jan-09-2020},
	pages = {101130},
	issn = {15749541},
	doi = {10.1016/j.ecoinf.2020.101130},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1574954120300807},
	author = {Ben Rais Lasram, Frida and Hattab, Tarek and Nogues, Quentin and Beaugrand, Gr{\'e}gory and Dauvin, Jean Claude and Halouani, Ghassen and Le Loc{\textquoteright}h, Francois and Nathalie Niquil and Leroy, Boris}
}
@article {7092,
	title = {An open-source framework to model present and future marine species distributions at local scale},
	journal = {Ecological Informatics},
	volume = {59},
	year = {2020},
	abstract = {Species Distribution Models (SDMs) are useful tools to project potential future species distributions under climate change scenarios. Despite the ability to run SDMs in recent and reliable tools, there are some misuses and proxies that are widely practiced and rarely addressed together, particularly when dealing with marine species. In this paper, we propose an open-source framework that includes (i) a procedure for homogenizing occurrence data to reduce the influence of sampling bias, (ii) a procedure for generating pseudo-absences, (iii) a hierarchical-filter approach, (iv) full incorporation of the third dimension by considering climatic variables at multiple depths and (v) building of maps that predict current and potential future ranges of marine species. This framework is available for non-modeller ecologists interested in investigating future species ranges with a user-friendly script. We investigated the robustness of the framework by applying it to marine species of the Eastern English Channel. Projections were built for the middle and the end of this century under RCP2.6 and RCP8.5 scenarios. {\textcopyright} 2020 Elsevier B.V.},
	keywords = {Climate Change, ecological modeling, English Channel, filter, future prospect, hierarchical system, marine ecosystem, sampling, scenario analysis, species diversity},
	issn = {15749541},
	doi = {10.1016/j.ecoinf.2020.101130},
	url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85086876945\&doi=10.1016\%2fj.ecoinf.2020.101130\&partnerID=40\&md5=0a5c308eac10a69880027d5de2e6fe98},
	author = {Ben Rais Lasram, F. and Hattab, T. and Nogues, Quentin and Beaugrand, G. and Dauvin, J.C. and Halouani, G. and Le Loc{\textquoteright}h, F. and Nathalie Niquil and Leroy, B.}
}
@article {9738,
	title = {Phylogeny of African fruit bats (Chiroptera, Pteropodidae) based on complete mitochondrial genomes},
	journal = {Journal of Zoological Systematics and Evolutionary Research},
	volume = {58},
	year = {2020},
	month = {Jan-11-2020},
	pages = {1395 - 1410},
	abstract = {Members of the family Pteropodidae, also known as Old World fruit bats, are represented in Africa by 14 genera and 44 species. Here, we sequenced 67 complete mitochondrial genomes from African and Asian pteropodids to better understand the evolutionary history of the subfamily Rousettinae, which includes most of the African species. An increased frequency of guanine to adenine transitions is detected in the mtDNA genomes of Macroglossus sobrinus and all species of Casinycteris and Scotonycteris. Our phylogenetic and molecular dating analyses based on 126 taxa and 15,448 characters indicate a low signal for deep relationships within the family, suggesting a rapid diversification during the Late Oligocene period of "warming." Within the subfamily Rousettinae, most nodes are highly supported by our different analyses (all nucleotide sites, SuperTRI analyses of a sliding window, transversions only, coding genes only, and amino acid sequences). The results indicate the existence of four tribes: Rousettini-distributed from Africa through Mediterranean region and South Asia to South-East Asia; Eonycterini-found in Asia; and Epomophorini and Scotonycterini-restricted to sub-Saharan Africa. Although most interspecies relationships are highly supported, three parts of the Rousettinae mitochondrial tree are still unresolved, suggesting rapid diversification: (a) among the three subtribes Epomophorina (Epomophorus sensu lato, i.e., including Micropteropus, Epomops, Hypsignathus, Nanonycteris), Plerotina (Plerotes), and Myonycterina (Myonycteris, Megaloglossus) in the Late Miocene; (b) among Epomops, Hypsignathus, and other species of Epomophorina at the Pliocene-Pleistocene boundary; and (c) among Myonycteris species in the Early Pleistocene. Within the Epomophorini, Stenonycteris lanosus emerged first, suggesting that lingual echolocation may have appeared in the common ancestor of Epomophorini and Rousettini. Our analyses suggest that multiple events of mtDNA introgression occurred within the Epomophorus species complex during the Pleistocene.},
	issn = {0947-5745},
	doi = {10.1111/jzs.v58.410.1111/jzs.12373},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/jzs.12373},
	author = {Hassanin, Alexandre and C{\'e}line Bonillo and Tshikung, Didier and Pongombo Shongo, C{\'e}lestin and Pourrut, Xavier and Kadjo, Blaise and Nakoun{\'e}, Emmanuel and Tu, Vuong Tan and Pri{\'e}, Vincent and Goodman, Steven M.}
}
@article {7088,
	title = {Quantitative food web modeling unravels the importance of the microphytobenthos-meiofauna pathway for a high trophic transfer by meiofauna in soft-bottom intertidal food webs.},
	journal = {Ecological Modelling},
	volume = {430},
	year = {2020},
	abstract = {Meiofauna are known to have an important role on many ecological processes, although, their role in food web dynamics is often poorly understood, partially as they have been an overlooked and under sampled organism group. Here, we used quantitative food web modeling to evaluate the trophic relationship between meiofauna and their food sources and how meiofauna can mediate the carbon flow to higher trophic levels in five contrasting soft-bottom intertidal habitats (including seagrass beds, mudflats and sandflats). Carbon flow networks were constructed using the linear inverse model-Markov chain Monte Carlo technique, with increased resolution of the meiofauna compartments (i.e. biomass and feeding ecology of the different trophic groups of meiofauna) compared to most previous modeling studies. These models highlighted that the flows between the highly productive microphytobenthos and the meiofauna compartments play an important role in transferring carbon to the higher trophic levels, typically more efficiently so than macrofauna. The pathway from microphytobenthos to meiofauna represented the largest flow in all habitats and resulted in high production of meiofauna independent of habitat. All trophic groups of meiofauna, except for selective deposit feeders, had a very high dependency on microphytobenthos. Selective deposit feeders relied instead on a wider range of food sources, with varying contributions of bacteria, microphytobenthos and sediment organic matter. Ecological network analyses (e.g. cycling, throughput and ascendency) of the modeled systems highlighted the close positive relationship between the food web efficiency and the assimilation of high-quality food sources by primary consumers, e.g. meiofauna and macrofauna. Large proportions of these flows can be attributed to trophic groups of meiofauna. The sensitivity of the network properties to the representation of meiofauna in the models leads to recommending a greater attention in ecological data monitoring and integrating meiofauna into food web models. {\textcopyright} 2020 Elsevier B.V.},
	keywords = {Carbon, Carbon flow networks, deposit feeder, Deposits, Ecological network analysis, Ecological process, Ecosystems, Feeding, Feeding ecology, food web, Food web model, intertidal community, intertidal habitats, Inverse problems, linear inverse model, Linear inverse models, Markov chain Monte Carlo techniques, Markov chains, Meiofauna, Microphytobenthos, Monte Carlo methods, Phytobenthos, quantitative analysis, Sediment organic matters, soft-bottom environment, stable isotope mixing models, trophic level, Trophic relationships, Trophic structure},
	issn = {03043800 (ISSN)},
	doi = {10.1016/j.ecolmodel.2020.109129},
	author = {van der Heijden, L.H. and Nathalie Niquil and Haraldsson, M. and Asmus, R.M. and Pacella, S.R. and Graeve, M. and Rzeznik-Orignac, J. and Asmus, H. and Saint-B{\'e}at, B. and Lebreton, B.}
}
@article {9389,
	title = {Respective contribution of urban wastewater and mangroves on nutrient dynamics in a tropical estuary during the monsoon season},
	journal = {Marine Pollution Bulletin},
	volume = {160},
	year = {2020},
	pages = {111652},
	abstract = {Estuaries of Southeast Asia are increasingly impacted by land-cover changes and pollution. Here, our research objectives were to (1) determine the origins of nutrient loads along the Can Gio estuary (Vietnam) and (2) identify the processes that affect the nutrient pools during the monsoon. We constructed four 24-h time-series along the salinity gradient measuring nutrient concentrations and stable isotopes values. In the upper estuary, urban effluents from Ho Chi Minh City were the main input of nutrients, leading to dissolved oxygen satura- tion \&lt; 20\%. In the lower estuary, ammonium and nitrite concentration peaks were explained by mangrove export. No contribution from aquaculture was detected, as it represents \&lt; 0.01\% of the total river discharge. Along the salinity gradient, nutrient inputs were rapidly consumed, potentially by phytoplankton while nitrate dual-stable isotopes indicated that nitrification occurred. Thus, even in a large and productive estuary, urban wastewater can affect nutrient dynamics with potentially important ecological risks.},
	issn = {0025326X},
	doi = {10.1016/j.marpolbul.2020.111652},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0025326X20307700},
	author = {Taillardat, Pierre and Marchand, Cyril and Friess, Daniel A. and Widory, David and Frank David and Ohte, Nobuhito and Nakamura, Takashi and Van Vinh, Truong and Thanh-Nho, Nguyen and Ziegler, Alan D.}
}
@article {7990,
	title = {A spatial food web model to investigate potential spillover effects of a fishery closure in an offshore wind farm},
	journal = {Journal of Marine Systems},
	volume = {212},
	year = {2020},
	month = {Jan-12-2020},
	pages = {103434},
	issn = {09247963},
	doi = {10.1016/j.jmarsys.2020.103434},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0924796320301305},
	author = {Halouani, Ghassen and Villanueva, Ching-Maria and Raoux, Aurore and Dauvin, Jean Claude and Ben Rais Lasram, Frida and Foucher, Eric and Le Loc{\textquoteright}h, Francois and Safi, Georges and Araignous, Emma and Jean-Paul Robin and Nathalie Niquil}
}
@article {9384,
	title = {Assessing nutrient dynamics in mangrove porewater and adjacent tidal creek using nitrate dual-stable isotopes: A new approach to challenge the Outwelling Hypothesis?},
	journal = {Marine Chemistry},
	volume = {214},
	year = {2019},
	pages = {103662},
	abstract = {The importance of mangrove-derived material in sustaining coastal food webs (i.e. the Outwelling Hypothesis) is often invoked in support of mangroves conservation. Biogeochemical cycling, particularly nitrogen (N) and phosphorus (P) in mangrove ecosystems, however, is poorly understood because of high spatial heterogeneity and temporal variability of sources, sinks, and transformation pathways. Here we show that the distribution of N and P are intimately related to vegetation distribution, tidal cycles, and seasonality. We examined the dynamics of N and P in sediments and in a tidal creek of the Can Gio Mangrove Forest, Vietnam. Our objectives were to (1) determine the spatial distribution of dissolved inorganic nitrogen and phosphorus in the mangrove forest along a Rhizophora-Avicennia-mudflat transect; and (2) identify the respective inputs and transformation pathways of N and P in the water column via 24-h time series measurements in a tidal creek. Sediment porewater had N-NH4+ and N-NO3- concentrations \&lt; 11 μM, except in the mudflat where N-NH4+ was as high as 162 μM. This difference was likely due to N-NH4+ uptake by trees in the vegetated areas and suggests that mangrove sediments can be a zone of NH4+ production via ammonification of organic nitrogen. In all stands, P-PO43- concentrations were three-fold higher during the wet season, with a maximum of 34.4 μM. This can be explained by enhanced microbial activity during the rainy season. The phosphorus seasonal trend was also observed in the creek water but with a maximum P-PO43- value of 4.3 μM only. In the tidal creek, NNH4+ was highly variable (0 to 51 μM), with the higher values measured at low tide and related to porewater discharge from the mudflat. Our data suggest that mangroves act both as a sink of dissolved inorganic nutrients via vegetation uptake and a source of ammonium from unvegetated mudflat porewater towards the tidal creek. The dual stable isotopes approach (δ15NNO3 \&amp; δ18ONO3) revealed that this ammonium was later nitrified within the water column. Moreover, the approach showed that some nitrate originated from the river-estuarine system during rising tides. The export of ammonium from mangrove porewater is presumably entirely consumed before exiting the tidal creek, thereby limiting the spatial extent of mangrove Outwelling. Nevertheless, our multi-isotope approach leads us to conclude that nutrients recycling via mangrove-derived organic matter mineralization may play a fundamental role in sustaining coastal food web.},
	issn = {03044203},
	doi = {10.1016/j.marchem.2019.103662},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0304420319300489},
	author = {Taillardat, Pierre and Ziegler, Alan D. and Friess, Daniel A. and Widory, David and Frank David and Ohte, Nobuhito and Nakamura, Takashi and Evaristo, Jaivime and Thanh-Nho, Nguyen and Van Vinh, Truong and Marchand, Cyril}
}
@article {6452,
	title = {Decreased thermal tolerance under recurrent heat stress conditions explains summer mass mortality of the blue mussel Mytilus edulis},
	journal = {Scientific Reports},
	volume = {9},
	year = {2019},
	pages = {17498},
	abstract = {<p>Extreme events such as heat waves have increased in frequency and duration over the last decades. Under future climate scenarios, these discrete climatic events are expected to become even more recurrent and severe. Heat waves are particularly important on rocky intertidal shores, one of the most thermally variable and stressful habitats on the planet. Intertidal mussels, such as the blue mussel Mytilus edulis, are ecosystem engineers of global ecological and economic importance, that occasionally suffer mass mortalities. This study investigates the potential causes and consequences of a mass mortality event of M. edulis that occurred along the French coast of the eastern English Channel in summer 2018. We used an integrative, climatological and ecophysiological methodology based on three complementary approaches. We first showed that the observed mass mortality (representing 49 to 59\% of the annual commercial value of local recreational and professional fisheries combined) occurred under relatively moderate heat wave conditions. This result indicates that M. edulis body temperature is controlled by non-climatic heat sources instead of climatic heat sources, as previously reported for intertidal gastropods. Using biomimetic loggers (i.e. {\textquoteright}robomussels{\textquoteright}), we identified four periods of 5 to 6 consecutive days when M. edulis body temperatures consistently reached more than 30 {\textdegree}C, and occasionally more than 35 {\textdegree}C and even more than 40 {\textdegree}C. We subsequently reproduced these body temperature patterns in the laboratory to infer M. edulis thermal tolerance under conditions of repeated heat stress. We found that thermal tolerance consistently decreased with the number of successive daily exposures. These results are discussed in the context of an era of global change where heat events are expected to increase in intensity and frequency, especially in the eastern English Channel where the low frequency of commercially exploitable mussels already questions both their ecological and commercial sustainability.</p>
},
	issn = {2045-2322},
	doi = {10.1038/s41598-019-53580-w},
	url = {https://doi.org/10.1038/s41598-019-53580-w},
	author = {Seuront, Laurent and Nicastro, Katy R. and Zardi, Gerardo I. and Goberville, Eric}
}
@article {8554,
	title = {Fine scale geographic residence and annual primary production drive body condition of wild immature green turtles ( <i>Chelonia mydas</i>               ) in Martinique Island (Lesser Antilles)},
	journal = {Biology Open},
	year = {2019},
	month = {Jan-01-2019},
	doi = {10.1242/bio.048058},
	url = {https://journals.biologists.com/bio/article/doi/10.1242/bio.048058/266150/Fine-scale-geographic-residence-and-annual-primary},
	author = {Bonola, Marc and Girondot, Marc and Robin, Jean-Patrice and Martin, Jordan and Siegwalt, Flora and Jeantet, Lor{\`e}ne and Lelong, Pierre and Grand, Cl{\'e}ment and Chambault, Philippine and Etienne, Denis and Gresser, Julie and Hielard, Ga{\"e}lle and Alexandre, Arqu{\'e} and R{\'e}gis, Sidney and Nicolas, Lecerf and Frouin, C{\'e}dric and Lefebvre, Fabien and Sutter, Emmanuel and Vedie, Fabien and Barnerias, Cyrille and Laurent, Thieulle and Bordes, Robinson and Guimera, Christelle and Aubert, Nathalie and Bouaziz, Myriam and Pinson, Adrien and Fr{\'e}d{\'e}ric, Flora and Matthieu, Duru and Benhalilou, Abdelwahab and C{\'e}line, Murgale and Maillet, Thomas and Andreani, Lucas and Campistron, Guilhem and Sikora, Maxym and Rateau, Fabian and Francis, George and Joffrey, Eggenspieler and Woignier, Thierry and All{\'e}nou, Jean-Pierre and Louis-Jean, Laurent and Chanteur, B{\'e}n{\'e}dicte and B{\'e}ranger, Christelle and Crillon, Jessica and Brador, Aude and Habold, Caroline and Le Maho, Yvon and Chevallier, Damien}
}
@article {6018,
	title = {Functional divergence of thyrotropin beta-subunit paralogs gives new insights into salmon smoltification metamorphosis},
	journal = {Scientific Reports},
	volume = {9},
	year = {2019},
	pages = {4561},
	author = {Fleming, Mitchell S and Maugars, Gersende and Lafont, Anne-Gaelle and Rancon, Jocelyn and Fontaine, Romain and Nourizadeh-Lillabadi, Rasoul and Weltzien, Finn-Arne and Santidrian Yebra-Pimentel, Elena and Dirks, Ron and McCormick, Stephen D and Rousseau, Karine and Martin, Patrick and Sylvie Dufour}
}
@article {8556,
	title = {Migratory flights and local wintering movements of Greylag Geese <i>Anser anser</i>               in western Europe},
	journal = {Bird Study},
	volume = {66},
	year = {2019},
	month = {Mar-04-2019},
	pages = {264 - 268},
	issn = {0006-3657},
	doi = {10.1080/00063657.2019.1620171},
	url = {https://www.tandfonline.com/doi/full/10.1080/00063657.2019.1620171},
	author = {Boos, Mathieu and Nesterova, Anna P. and Chevallier, Damien and Follestad, Arne}
}
@article {8156,
	title = {Morphological and molecular criteria allow the identification of putative germ stem cells in a lophotrochozoan, the Pacific oyster Crassostrea gigas},
	journal = {Histochemistry and cell biology},
	volume = {151},
	year = {2019},
	pages = {419-433},
	author = {Cherif Feildel Maeva and Kellner Kristell and Goux Didier and Elie Nicolas and Adeline Beatrice and Heude Berthelin Clothilde}
}
@article {9365,
	title = {Neuromuscular structure of the larva to early ancestrula stages of the cyclostome bryozoan Crisia eburnea},
	journal = {Acta Zoologica},
	volume = {100},
	year = {2019},
	month = {Jan-07-2019},
	pages = {268 - 281},
	issn = {0001-7272},
	doi = {10.1111/azo.2019.100.issue-310.1111/azo.12252},
	url = {https://onlinelibrary.wiley.com/toc/14636395/100/3},
	author = {Nielsen, Claus and Bekkouche, Nicolas Tarik and Worsaae, Katrine}
}
@article {6664,
	title = {Patterns of at-sea behaviour at a hybrid zone between two threatened seabirds},
	journal = {Scientific Reports},
	volume = {9},
	year = {2019},
	month = {Jan-12-2019},
	doi = {10.1038/s41598-019-51188-8},
	url = {http://www.nature.com/articles/s41598-019-51188-8},
	author = {Austin, Rhiannon E. and Wynn, Russell B. and Votier, Stephen C. and Trueman, Clive and McMinn, Miguel and Rodr{\'\i}guez, Ana and Suberg, Lavinia and Maurice, Louise and Newton, Jason and Genovart, Meritxell and Clara P{\'e}ron and Gr{\'e}millet, David and Guilford, Tim}
}
@article {8555,
	title = {Population recovery changes population composition at a major southern Caribbean juvenile developmental habitat for the green turtle, Chelonia mydasAbstract},
	journal = {Scientific Reports},
	volume = {9},
	year = {2019},
	month = {Jan-12-2019},
	doi = {10.1038/s41598-019-50753-5},
	url = {http://www.nature.com/articles/s41598-019-50753-5},
	author = {van der Zee, Jurjan P. and Christianen, Marjolijn J. A. and Nava, Mabel and Velez-Zuazo, Ximena and Hao, Wensi and B{\'e}rub{\'e}, Martine and van Lavieren, Hanneke and Hiwat, Michael and Berzins, Rachel and Chevalier, Johan and Chevallier, Damien and Lankester, Marie-Cl{\'e}lia and Bjorndal, Karen A. and Bolten, Alan B. and Becking, Leontine E. and Palsb{\o}ll, Per J.}
}
@article {7043,
	title = {Preliminary note on the morphological characters of <i>penja</i>               (amphidromous goby postlarvae) in West Sulawesi and Gorontalo Bay},
	journal = {IOP Conference Series: Earth and Environmental Science},
	volume = {370},
	year = {2019},
	month = {Jan-11-2019},
	pages = {012007},
	abstract = {Penjais the local name for the postlarvae of fish belonging to the Gobioidei, whose appearance at certain times is an amphidromous migration process from the sea to rivers. This group of fish is generally referred to as amphidromous gobies. This study aimed toreveal some facts related to the species diversity of penja based on morphological characteristics. The study was  conducted  from  October  2017  to  March  2019  in  West  Sulawesi  and  Gorontalo  Bay, Indonesia.  Amphidromous  goby  samples  at  the penja(postlarval) stage  were  obtained  from fishermen{\textquoteright}s  catches  and from  traditional markets  in  each  location.  The  samples  obtained  were measured  and  described  based  on  morphological  differences.  The  total  length  of  the  sampled penja ranged  from  18  mm  to  58  mm.  All  penja  were  identified  as  belonging  to  one  of  two families, the Gobiidae and Eleotridae. Although the species obtained from the waters of West Sulawesi  and  Gorontalo  Bay  were  similar,  there  were  variations  in  species  composition (relative  abundance)  based  on  observed  morphology  of penja postlarvae  from  these  two locations.},
	doi = {10.1088/1755-1315/370/1/012007},
	url = {https://iopscience.iop.org/article/10.1088/1755-1315/370/1/012007},
	author = {Nurjirana and Haris, A and Sahami, F M and Philippe Keith and Burhanuddin, A I}
}
@article {7036,
	title = {Shedding light on the migratory patterns of the Amazonian goliath catfish, <i>Brachyplatystoma platynemum</i>               , using otolith <sup>87</sup>               Sr/ <sup>86</sup>               Sr analyses},
	journal = {Aquatic Conservation: Marine and Freshwater Ecosystems},
	volume = {29},
	year = {2019},
	month = {Aug-03-2020},
	pages = {397 - 408},
	issn = {1052-7613},
	doi = {10.1002/aqc.v29.310.1002/aqc.3046},
	url = {https://onlinelibrary.wiley.com/toc/10990755/29/3},
	author = {Hauser, Marilia and Doria, Carolina R.C. and Santos, Roberto V. and Garc{\'\i}a-Vasquez, Aurea and Marc Pouilly and Pecheyran, Christophe and Ponzevera, Emmanuel and Torrente-Vilara, Gislene and B{\'e}rail, Sylvain and Panfili, Jacques and Darnaude, Audrey and Renno, Jean-Fran{\c c}ois and Garc{\'\i}a-D{\'a}vila, Carmen and Jesus Nu{\~n}ez-Rodriguez and Ferraton, Franck and Vargas, Gladys and Duponchelle, Fabrice}
}
@article {6662,
	title = {Temperature patterns and mechanisms influencing coral bleaching during the 2016 El Ni{\~n}o},
	journal = {Nature Climate Change},
	volume = {9},
	year = {2019},
	pages = {845-851},
	abstract = {Under extreme heat stress, corals expel their symbiotic algae and colour (that is, {\textquoteleft}bleaching{\textquoteright}), which often leads to widespread mortality. Predicting the large-scale environmental conditions that reinforce or mitigate coral bleaching remains unresolved and limits strategic conservation actions1,2. Here we assessed coral bleaching at 226 sites and 26 environmental variables that represent different mechanisms of stress responses from East Africa to Fiji through a coordinated effort to evaluate the coral response to the 2014{\textendash}2016 El Ni{\~n}o/Southern Oscillation thermal anomaly. We applied common time-series methods to study the temporal patterning of acute thermal stress and evaluated the effectiveness of conventional and new sea surface temperature metrics and mechanisms in predicting bleaching severity. The best models indicated the importance of peak hot temperatures, the duration of cool temperatures and temperature bimodality, which explained 50\% of the variance, compared to the common degree-heating week temperature index that explained only 9\%. Our findings suggest that the threshold concept as a mechanism to explain bleaching alone was not as powerful as the multidimensional interactions of stresses, which include the duration and temporal patterning of hot and cold temperature extremes relative to average local conditions. {\textcopyright} 2019, The Author(s), under exclusive licence to Springer Nature Limited.},
	keywords = {Algae, Anthozoa},
	issn = {1758678X},
	doi = {10.1038/s41558-019-0576-8},
	url = {https://www.nature.com/articles/s41558-019-0576-8},
	author = {McClanahan, T.R. and Darling, E.S. and Maina, J.M. and Muthiga, N.A. and D{\textquoteright}agata, S. and Jupiter, S.D. and Arthur, R. and Wilson, S.K. and Mangubhai, S. and Nand, Y. and Ussi, A.M. and Humphries, A.T. and Patankar, V.J. and Mireille M.M. Guillaume and Philippe Keith and Shedrawi, G. and Julius, P. and Grimsditch, G. and Ndagala, J. and Leblond, J.}
}
@article {5769,
	title = {Trophic relationships and basal resource utilisation in the Can Gio Mangrove Biosphere Reserve (Southern Vietnam)},
	journal = {Journal of Sea Research},
	year = {2019},
	abstract = {<p class="rtejustify">Abstract Fatty acid biomarkers and dual stable isotopes (δ13C and δ15N) were used to identify the preferred food sources of consumers in a mangrove tidal creek and nearby unforested (mud bank) and forested areas located in the Can Gio Mangrove Biosphere Reserve (Southern Vietnam). We analysed 15 macro-invertebrates and 1 fish species representing primary consumers and their immediate predators in this area. Specific groups of fatty acids were used to trace the fate of various food sources (i.e., suspended particulate organic matter, mangrove litter and sedimentary organic matter). The δ13C and δ15N of consumers ranged from -26.9 to -18.8{\textperthousand} and from 1.1 to 9.9{\textperthousand}, respectively. The trophic pathway based on mangrove litter, characteristic of mangrove ecosystems, is nutritionally sustaining various crab and snail species. In contrast, it appears that the most mobile species (fish and shrimps), living in the water column and possibly migrating with tides, are mostly feeding on suspended particulate organic matter, suggesting that this trophic pathway is of great importance for connectivity among tropical coastal ecosystems. Our study suggests that snails and crabs mainly act as mineralisers, processing high quantities of detrital material to meet their nutritional needs and thus releasing nutrients through the production of faeces, that are further mineralised by microorganisms, while locally grown phytoplankton reintegrates these compounds into its biomass and feeds migrating species. We highlight here a possible link between mangrove litter and coastal food webs.</p>
},
	doi = {10.1016/j.seares.2018.12.006},
	url = {https://www.sciencedirect.com/science/article/pii/S1385110118301679},
	author = {Frank David and Cyril Marchand and Nguyen, Thanh-Nho and Pierre Taillardat and Tarik Meziane}
}
@article {5630,
	title = {Age and growth of the Amazonian migratory catfish Brachyplatystoma rousseauxii in the Madeira River basin before the construction of dams},
	journal = {Neotropical Ichthyology},
	volume = {16},
	year = {2018},
	pages = {e170130, 2018},
	abstract = {<p class="rtejustify">The goliath catfish <em>Brachyplatystoma rousseauxii</em> has crucial economical and ecological functions in the Amazon basin. Although its life history characteristics have been studied in the Amazon, there is little information in the Madeira River basin, which holds genetically distinct populations and where dams were recently built. Using fish collected in Bolivia, Brazil and Peru, this study provides a validation of growth rings deposition and details the growth patterns of <em>B. rousseauxii</em> in the Madeira before the dams{\textquoteright} construction. Age structure and growth parameters were determined from 497 otolith readings. The species exhibits two growth rings per year and sampled fish were between 0 and 16 years old. In the Brazilian portion of the basin, mainly young individuals below 5 years old were found, whereas older fish (\&gt; 5 years) were caught only in the Bolivian and Peruvian stretches, indicating that after migrating upstream to reproduce, adults remain in the headwaters of the Madeira River. Comparing with previous publications, <em>B. rousseauxii</em> had a slower growth and 20 cm lower maximum standard length in the Madeira River than in the Amazon River. This study provides a baseline for future evaluation of changes in population dynamics of the species following dams closure.</p>

<p class="rtejustify">Palabras clave:\&nbsp;Amazon; Biannual rings; Goliath catfish; Life cycle; Otolith</p>
},
	doi = {10.1590/1982-0224-20170130},
	author = {Hauser, Marilia and Doria, C R C and Melo, L and Santos, A and Ayala, D and Nogueira, L and Amadio, S. A. and Fabr{\'e}, N and Torrente-Vilara, Gislene and Garc{\'\i}a V{\'a}squez, A and Renno, Jean-Francois and Carvajal-Vallejos, F M and Alonso, J-C and N{\'u}{\~n}ez-Rodr{\'\i}guez, Jes{\'u}s and Fabrice Duponchelle}
}
@article {6744,
	title = {Dynamics of particulate organic matter composition in coastal systems: Forcing of spatio-temporal variability at multi-systems scale},
	journal = {Progress in Oceanography},
	volume = {162},
	year = {2018},
	month = {Jan-03-2018},
	pages = {271 - 289},
	issn = {00796611},
	doi = {10.1016/j.pocean.2018.02.026},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0079661117302100},
	author = {Li{\'e}nart, Camilla and Savoye, Nicolas and David, Val{\'e}rie and Ramond, Pierre and Rodriguez Tress, Paco and Hanquiez, Vincent and Marieu, Vincent and Aubert, Fabien and Aubin, S{\'e}bastien and Bichon, Sabrina and Boinet, Christophe and Bourasseau, Line and Bozec, Yann and Br{\'e}ret, Martine and Elsa Breton and Caparros, Jocelyne and Cariou, Thierry and Claquin, Pascal and Conan, Pascal and Corre, Anne-Marie and Costes, Laurence and Muriel Crouvoisier and Del Amo, Yolanda and Derriennic, Herv{\'e} and Dindinaud, Fran{\c c}ois and Duran, Robert and Durozier, Ma{\"\i}a and Devesa, J{\'e}r{\'e}my and Ferreira, Sophie and Eric Feunteun and Garcia, Nicole and Geslin, Sandrine and Emilie Grossteffan and Gueux, Aurore and Guillaudeau, Julien and Guillou, Ga{\"e}l and Jolly, Orianne and Lachauss{\'e}e, Nicolas and Lafont, Michel and Lagadec, V{\'e}ronique and Lamoureux, J{\'e}zabel and Lauga, B{\'e}atrice and Lebreton, Beno{\^\i}t and Lecuyer, Eric and Lehodey, Jean-Paul and Leroux, C{\'e}dric and St{\'e}phane L{\textquoteright}Helguen and Mac{\'e}, Eric and Maria, Eric and Mousseau, Laure and Antoine Nowaczyk and Pineau, Philippe and Petit, Franck and Pujo-Pay, Mireille and Raimbault, Patrick and Rimmelin-Maury, Peggy and Rouaud, Vanessa and Sauriau, Pierre-Guy and Sultan, Emmanuelle and Susperregui, Nicolas}
}
@article {5619,
	title = {Effect of CO2{\textendash}induced ocean acidification on the early development and shell mineralization of the European abalone (Haliotis tuberculata)},
	journal = {Journal of Experimental Marine Biology and Ecology},
	volume = {508},
	year = {2018},
	pages = {52 - 63},
	abstract = {<p>Ocean acidification is a major global stressor that leads to substantial changes in seawater carbonate chemistry, with potentially significant consequences for calcifying organisms. Marine shelled mollusks are ecologically and economically important species providing essential ecosystem services and food sources for other species. Because they use calcium carbonate (CaCO3) to produce their shells, mollusks are among the most vulnerable invertebrates to ocean acidification, with early developmental stages being particularly sensitive to pH changes. This study investigated the effects of CO2-induced ocean acidification on larval development of the European abalone Haliotis tuberculata, a commercially important gastropod species. Abalone larvae were exposed to a range of reduced pHs (8.0, 7.7 and 7.6) over the course of their development cycle, from early-hatched trochophore to pre-metamorphic veliger. Biological responses were evaluated by measuring the survival rate, morphology and development, growth rate and shell calcification. Larval survival was significantly lower in acidified conditions than in control conditions. Similarly, larval size was consistently smaller under low pH conditions. Larval development was also affected, with evidence of a developmental delay and an increase in the proportion of malformed or unshelled larvae. In shelled larvae, the intensity of birefringence decreased under low pH conditions, suggesting a reduction in shell mineralization. Since these biological effects were observed for pH values expected by 2100, ocean acidification may have potentially negative consequences for larval recruitment and persistence of abalone populations in the near future.</p>
},
	keywords = {Abalone, larval development, Ocean acidification, Shell mineralization},
	issn = {0022-0981},
	doi = {https://doi.org/10.1016/j.jembe.2018.08.005},
	url = {http://www.sciencedirect.com/science/article/pii/S0022098117304070},
	author = {Nathalie Wessel and Sophie Martin and Badou, Aicha and Philippe Dubois and Sylvain Huchette and Vivien Julia and Flavia Nunes and Ewan Harney and Christine Paillard and St{\'e}phanie Auzoux-Bordenave}
}
@article {7108,
	title = {The effect of dietary DHA and taurine on rotifer capture success, growth, survival and vision in the larvae of Atlantic bluefin tuna ( Thunnus thynnus )},
	journal = {Aquaculture},
	volume = {482},
	year = {2018},
	month = {Jan-01-2018},
	pages = {137 - 145},
	issn = {00448486},
	doi = {10.1016/j.aquaculture.2017.09.039},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0044848617303976},
	author = {Koven, W. and Nixon, O. and Allon, G. and Gaon, A. and El Sadin, S. and Jack Falcon and Besseau, L. and Escande, M. and Vassallo Agius, R. and Gordin, H. and Tandler, A.}
}
@article {8567,
	title = {Identification of marine key areas across the Caribbean to ensure the conservation of the critically endangered hawksbill turtle},
	journal = {Biological Conservation},
	volume = {223},
	year = {2018},
	month = {Jan-07-2018},
	pages = {170 - 180},
	issn = {00063207},
	doi = {10.1016/j.biocon.2018.05.002},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0006320718301423},
	author = {Nivi{\`e}re, Manon and Chambault, Philippine and P{\'e}rez, Thierry and Etienne, Denis and Bonola, Marc and Martin, Jordan and Barnerias, Cyrille and Vedie, Fabien and Mailles, Julien and Dumont-Dayot, {\'E}milie and Gresser, Julie and Hielard, Ga{\"e}lle and R{\'e}gis, Sidney and Lecerf, Nicolas and Thieulle, Laurent and Duru, Matthieu and Lefebvre, Fabien and Milet, Guillaume and Guillemot, Blandine and Bildan, Bernard and de Montgolfier, Benjamin and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Maillet, Thomas and Queneherve, Patrick and Woignier, Thierry and Safi, Morjane and Le Maho, Yvon and Petit, Odile and Chevallier, Damien}
}
@article {7037,
	title = {Metabarcoding by capture using a single COI probe (MCSP) to identify and quantify fish species in ichthyoplankton swarms},
	journal = {PLOS ONE},
	volume = {13},
	year = {2018},
	month = {Dec-09-2018},
	pages = {e0202976},
	doi = {10.1371/journal.pone.0202976},
	url = {https://dx.plos.org/10.1371/journal.pone.0202976},
	author = {Mariac, C. and Vigouroux, Y. and Duponchelle, F. and Garc{\'\i}a-D{\'a}vila, C and Jesus Nu{\~n}ez-Rodriguez and Desmarais, E. and Renno, J.F.},
	editor = {Hajibabaei, Mehrdad}
}
@article {5418,
	title = {Microbial parasites make cyanobacteria blooms less of a trophic dead-end than commonly assumed},
	journal = {The ISME Journal},
	volume = {12},
	year = {2018},
	pages = {1008-1020},
	abstract = {<p class="rtejustify">Les parasites sont pr{\'e}sents dans tous les {\'e}cosyst{\`e}mes et peuvent {\^e}tre {\`a} l{\textquoteright}origine de changements dans la structure et le fonctionnement des r{\'e}seaux trophiques. Cependant, {\`a} ce jour, nos connaissances concernant les effets des parasites sur la dynamique des r{\'e}seaux trophiques restent limit{\'e}es. Dans cette {\'e}tude, nous analysons le r{\^o}le de parasites microbiens (virus de bact{\'e}ries, phytoplancton et cyanobact{\'e}ries, et des chitrides parasites des cyanobact{\'e}ries) sur le transfert d{\textquoteright}{\'e}nergie et le fonctionnement du r{\'e}seau trophique au cours d{\textquoteright}un bloom de cyanobact{\'e}rie {\`a} l{\textquoteright}aide d{\textquoteright}un mod{\`e}le d{\textquoteright}Analyse Inverse Lin{\'e}aire. Cette mod{\'e}lisation a permis de mettre en {\'e}vidence l{\textquoteright}importance du broutage sur les bact{\'e}ries h{\'e}t{\'e}rotrophes {\`a} travers la voie microbienne (DOC -\&gt; bact{\'e}ries -\&gt; consommateurs), ainsi que la d{\'e}pendance des consommateurs vis {\`a} vis des bact{\'e}ries notamment pendant les blooms de cyanobact{\'e}ries. Au fur et {\`a} mesure que les bact{\'e}ries deviennent la principale source d{\textquoteright}{\'e}nergie des consommateurs, le syst{\`e}me adopte une structure plus complexe, en r{\'e}seau, s{\textquoteright}accompagnant d{\textquoteright}une augmentation de l{\textquoteright}omnivorie du syst{\`e}me. Cette derni{\`e}re pourrait {\^e}tre {\`a} l{\textquoteright}origine d{\textquoteright}une augmentation de la capacit{\'e} du syst{\`e}me {\`a} r{\'e}sister {\`a} l{\textquoteright}efflorescence des cyanobact{\'e}ries. Finalement, nous avons {\'e}galement mis en {\'e}vidence les effets de la destruction des cellules h{\^o}tes des cyanobact{\'e}ries par les chitrides sur la dynamique du r{\'e}seau trophique. En effet, cette derni{\`e}re faciliterait le broutage des cyanobact{\'e}ries et offrirait des voies alternatives aux consommateurs, ce qui augmenteraient la stabilit{\'e} du syst{\`e}me.</p>

<p class="rtejustify">\&nbsp;</p>

<p class="rtejustify">Parasites exist in every ecosystem and can have large influence on food-web structure and function, yet, we know little about parasites{\textquoteright} effect on food-web dynamics. Here we investigate the role of microbial parasitism (viruses of bacteria, phytoplankton and cyanobacteria, and parasitic chytrids on cyanobacteria) on the dynamics of trophic pathways and food-web functioning during a cyanobacteria bloom, using linear inverse food-web modeling parameterized with a 2-month long dataset (biomasses, infection parameters, etc.). We show the importance of grazing on heterotrophic bacteria (the microbial pathway: DOC -\&gt; bacteria -\&gt; consumer) and how consumers depended on bacteria during peak-cyanobacteria bloom, which abundance was partly driven by the viral activity. As bacteria become the main energy pathway to the consumers, the system takes a more web-like structure through increased omnivory, and may thereby facilitate the system{\textquoteright}s persistence to the cyanobacteria outbreak. We also showed how the killing of cyanobacteria host-cells by chytrids had important impact on the food-web dynamics by facilitating grazing on the cyanobacteria, and by offering alternative pathways to the consumers. This seemed to increase the system{\textquoteright}s ability to return to a mix of trophic pathways, which theoretically increases the stability of the system.</p>
},
	doi = {10.1038/s41396-018-0045-9},
	url = {https://doi.org/10.1038/s41396-018-0045-9},
	author = {Haraldsson, Matilda and M{\'e}lanie Gerphagnon and Bazin, Pauline and Samuele Tecchio and T{\'e}l{\'e}sphore Sime-Ngando and Nathalie Niquil}
}
@article {5864,
	title = {{OZCAR}: The French Network of Critical Zone Observatories},
	journal = {Vadose Zone Journal},
	volume = {17},
	year = {2018},
	doi = {10.2136/vzj2018.04.0067},
	url = {https://doi.org/10.2136/vzj2018.04.0067},
	author = {J. Gaillardet and I. Braud and F. Hankard and S. Anquetin and O. Bour and N. Dorfliger and J.R. de Dreuzy and S. Galle and C. Galy and S. Gogo and L. Gourcy and F. Habets and F. Laggoun and L. Longuevergne and T. Le Borgne and F. Naaim-Bouvet and G. Nord and V. Simonneaux and D. Six and T. Tallec and C. Valentin and Gwena{\"e}l Abril and P. Allemand and A. Ar{\`e}nes and B. Arfib and L. Arnaud and N. Arnaud and P. Arnaud and S. Audry and V. Bailly Comte and C. Batiot and A. Battais and H. Bellot and E. Bernard and C. Bertrand and H. Bessi{\`e}re and S. Binet and J. Bodin and X. Bodin and L. Boithias and J. Bouchez and B. Boudevillain and I. Bouzou Moussa and F. Branger and J. J. Braun and P. Brunet and B. Caceres and D. Calmels and B. Cappelaere and H. Celle-Jeanton and F. Chabaux and K. Chalikakis and C. Champollion and Y. Copard and C. Cotel and P. Davy and P. Deline and G. Delrieu and J. Demarty and C. Dessert and M. Dumont and C. Emblanch and J. Ezzahar and M. Est{\`e}ves and V. Favier and M. Faucheux and N. Filizola and P. Flammarion and P. Floury and O. Fovet and M. Fournier and A. J. Francez and L. Gandois and C. Gascuel and E. Gayer and C. Genthon and M. F. G{\'e}rard and D. Gilbert and I. Gouttevin and M. Grippa and G. Gruau and A. Jardani and L. Jeanneau and J. L. Join and H. Jourde and F. Karbou and D. Labat and Yvan Lagadeuc and E. Lajeunesse and R. Lastennet and W. Lavado and E. Lawin and T. Lebel and C. Le Bouteiller and C. Legout and Y. Lejeune and E. Le Meur and N. Le Moigne and J. Lions and A. Lucas and J. P. Malet and C. Marais-Sicre and J. C. Mar{\'e}chal and C. Marlin and P. Martin and J. Martins and J. M. Martinez and N. Massei and A. Mauclerc and N. Mazzilli and J. Mol{\'e}nat and P. Moreira-Turcq and E. Mougin and S. Morin and J. Ndam Ngoupayou and G. Panthou and C. Peugeot and G. Picard and M. C. Pierret and G. Porel and A. Probst and J. L. Probst and A. Rabatel and D. Raclot and L. Ravanel and F. Rejiba and P. Ren{\'e} and O. Ribolzi and J. Riotte and A. Rivi{\`e}re and H. Robain and L. Ruiz and J. M. Sanchez-Perez and W. Santini and S. Sauvage and P. Schoeneich and J. L. Seidel and M. Sekhar and O. Sengtaheuanghoung and N. Silvera and M. Steinmann and A. Soruco and G. Tallec and E. Thibert and D. Valdes Lao and C. Vincent and D. Viville and P. Wagnon and R. Zitouna}
}
@book {5650,
	title = {Peces de consumo de la Amazon{\'\i}a Peruana},
	year = {2018},
	pages = {218},
	edition = {Instituto de Investigaciones de la Amazon{\'\i}a Peruana (IIAP), Iquitos, Per{\'u}},
	author = {Garc{\'\i}a-D{\'a}vila, C and Sanchez, H. and Flores, M and Mejia, J. and Angulo, C. and Castro-Ruiz, D. and Estivals, G. and Garcia, Aurea and Vargas, G. and Nolorbe, C. and Jesus Nu{\~n}ez-Rodriguez and Mariac, C{\'e}dric and Fabrice Duponchelle and Renno, Jean-Francois}
}
@article {6799,
	title = {Predicting krill swarm characteristics important for marine predators foraging off East Antarctica},
	journal = {Ecography},
	volume = {41},
	year = {2018},
	pages = {996 - 1012},
	issn = {0906-7590},
	url = {https://onlinelibrary.wiley.com/doi/full/10.1111/ecog.03080},
	author = {Bestley, Sophie and Raymond, Ben and Gales, NJ and Harcourt, RG and Hindell, Mark A and Jonsen, ID and Nicol, S and Clara P{\'e}ron and Sumner, MD and Weimerskirch, H. and Wotherspoon, S. and Cox, MJ}
}
@article {5607,
	title = {Temporal variation of secondary migrations potential: concept of temporal windows in four commercial bivalve species},
	journal = {Aquatic Living Resources},
	volume = {31},
	year = {2018},
	month = {08/2018},
	pages = {1-9},
	abstract = {<p>Post-settlement dispersal potential of four commercial bivalve species (<em>Mytilus edulis</em>, <em>Pecten maximus</em>, <em>Venus verrucosa</em> and <em>Ruditapes philippinarum</em>) were studied through the assessment of recruits{\textquoteright} sinking velocities by using a sinking velocity tube of five meters height. In parallel, dynamics of shear stress were monitored for five months on a tidal habitat characterized by the presence and the dispersal of the four species. By coupling both datasets we propose first theoretical estimates of temporal windows of secondary migrations. These experiments revealed interspecific differences in migration potential relate to shell shapes and behaviour, especially to secretion of byssal threads. The sensitivity to passive and active post-settlement migrations seems to rely on the\&nbsp;synchronisation between the arrival on the sediment, the tidal regime (spring tide, neap tide), but also the rate of growth of the recruits. The present study confirms that patterns of secondary migrations of bivalve recruits result from a close physical-biological coupling involving benthic boundary layer (BBL) hydrodynamics and shell morphology as well as eco-ethological responses to environmental conditions but clearly modulated by the growth dynamics until a threshold size when drifting is no longer possible.</p>
},
	keywords = {Bivalves recruits, drifting, secondary migrations, temporal windows},
	doi = { 	https://doi.org/10.1051/alr/2018007 },
	url = {https://www.alr-journal.org/articles/alr/abs/2018/01/alr170158/alr170158.html},
	author = {Martin For{\^e}t and R{\'e}jean Tremblay and Urs Neumeier and Fr{\'e}d{\'e}ric Olivier}
}
@article {9383,
	title = {Trace metals partitioning between particulate and dissolved phases along a tropical mangrove estuary (Can Gio, Vietnam)},
	journal = {Chemosphere},
	volume = {196},
	year = {2018},
	pages = {311{\textendash}322},
	abstract = {Mangroves can be considered as biogeochemical reactors along (sub)tropical coastlines, acting both as sinks or sources for trace metals depending on environmental factors. In this study, we characterized the role of a mangrove estuary, developing downstream a densely populated megacity (Ho Chi Minh City, Vietnam), on the fate and partitioning of trace metals. Surface water and suspended particulate matter were collected at four sites along the estuarine salinity gradient during 24 h cycling in dry and rainy seasons. Salinity, pH, DO, TSS, POC, DOC, dissolved and particulate Fe, Mn, Cr, As, Cu, Ni, Co and Pb were measured. TSS was the main trace metals carrier during their transit in the estuary. However, TSS variations did not explain the whole variability of metals distribution. Mn, Cr and As were highly reactive metals while the other metals (Fe, Ni, Cu, Co and Pb) presented stable log KD values along the estuary. Organic matter dynamic appeared to play a key role in metals fractioning. Its decomposition during water transit in the estuary induced metal desorption, especially for Cr and As. Conversely, dissolved Mn concentrations decreased along the estuary, which was suggested to result from Mn oxidative precipitation onto solid phase due to oxidation and pH changes. Extra sources as pore-water release, runoff from adjacent soils, or aquaculture effluents were suggested to be involved in trace metal dynamic in this estuary. In addition, the monsoon increased metal loads, notably dissolved and particulate Fe, Cr, Ni and Pb.},
	issn = {00456535},
	doi = {10.1016/j.chemosphere.2017.12.189},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0045653517321677},
	author = {Thanh-Nho, Nguyen and Strady, Emilie and Nhu-Trang, Tran{\textendash}Thi and Frank David and Marchand, Cyril}
}
@article {8981,
	title = {Trophic cues promote secondary migrations of bivalve recruits in a highly dynamic temperate intertidal system},
	journal = {Ecosphere},
	volume = {9},
	year = {2018},
	month = {Apr-12-2018},
	pages = {e02510},
	issn = {2150-8925},
	doi = {10.1002/ecs2.2018.9.issue-1210.1002/ecs2.2510},
	url = {https://onlinelibrary.wiley.com/toc/21508925/9/12},
	author = {Foret, Martin and Barbier, Pierrick and Tremblay, Rejean and Meziane, Tarik and Neumeier, Urs and Duvieilbourg, Eric and Fr{\'e}d{\'e}ric Olivier}
}
@article {8982,
	title = {Trophic cues promote secondary migrations of bivalve recruits in a highly dynamic temperate intertidal system},
	journal = {Ecosphere},
	volume = {9},
	year = {2018},
	month = {Apr-12-2018},
	pages = {e02510},
	issn = {2150-8925},
	doi = {10.1002/ecs2.2018.9.issue-1210.1002/ecs2.2510},
	url = {https://onlinelibrary.wiley.com/toc/21508925/9/12},
	author = {Foret, Martin and Barbier, Pierrick and Tremblay, Rejean and Tarik Meziane and Neumeier, Urs and Duvieilbourg, Eric and Fr{\'e}d{\'e}ric Olivier}
}
@article {7034,
	title = {Use of an acoustic telemetry array for fine scale fish behaviour assessment of captive Paiche, <i>Arapaima gigas,</i>               breeders},
	journal = {Aquaculture Research},
	volume = {49},
	year = {2018},
	month = {Jan-06-2018},
	pages = {2296 - 2304},
	doi = {10.1111/are.2018.49.issue-610.1111/are.13692},
	url = {http://doi.wiley.com/10.1111/are.2018.49.issue-6},
	author = {Jesus Nu{\~n}ez-Rodriguez and Vela D{\'\i}az, Antonia and Bazan-Albitez, Roger and Rebaza Alfaro, Carmela and Koua, Daniel and N{\'u}{\~n}ez, Lucie and Testi, Baptiste and Renno, Jean-Francois and Duponchelle, Fabrice and Pella, Herv{\'e}}
}
@article {5628,
	title = {Use of an acoustic telemetry array for fine scale fish behaviour assessment of captive Paiche, Arapaima gigas, breeders},
	journal = {Aquaculture Research },
	volume = {49},
	year = {2018},
	pages = {2296-2304},
	abstract = {<p class="rtejustify">As\&nbsp;<em>Arapaima gigas</em>\&nbsp;is one of the most valuable species for the growing production of Amazonian aquaculture, knowledge of its reproductive behaviour and its application to increase reproduction success in captivity is of great importance as no hormonal spawning induction technique exists for this species. An acoustic positioning system (LOTEK Inc.) was used to observe the interactions of adult fish to better understand the formation of mating pairs. Fish were placed in a 4,500\&nbsp;m2\&nbsp;aquaculture pond over a 6-month period in the IIAP field station of Pucallpa, Per{\'u}. This paper describes the methodological protocols used to set up and test the hydrophone array and presents the methodology used for the analysis of the huge amount of collected data. This methodology is illustrated by the analysis of a 6-day period for a mating pair that showed a spawning event. The results indicated that male and female occupied mostly one preferential area in one pond edge where the nesting area is located. Different activity patterns were observed during the spawning event, with male and female being closer during the spawning day. The results also showed that male travelled less distance than female during the studied period. Finally these results demonstrated the suitability of such equipment to monitor fish interactions at fine spatial (sub meter) and temporal (5\&nbsp;s) scales in confined environments like aquaculture ponds.</p>
},
	doi = {doi.org/10.1111/are.13692},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/are.13692},
	author = {Jesus Nu{\~n}ez-Rodriguez and Vela Diaz, A. and Bazan-Albitez, R and Koua, D and Nu{\~n}ez L. and Testi, B. and Renno, Jean-Francois and Duponchelle, F and Pella, H}
}
@article {5036,
	title = {Before-After analysis of the trophic network of an experimental dumping site in the eastern part of the Bay of Seine (English Channel)},
	journal = {Marine Pollution Bulletin},
	volume = {118},
	year = {2017},
	month = {05/2017},
	pages = {101-111},
	abstract = {<p class="rtejustify">An experimental study was conducted to assess the physical and biological impacts of muddy fine sand dredged material dumped on a medium sand site Machu offshore the Seine Estuary. Complementary trophic web modelling tools were applied to the Machu ecosystem to analyse the effects of dumping operations. Results show that, after the dumping operations, the biomass of fish increased while invertebrate biomass remained relatively stable through time. Nevertheless, the biomasses of benthic invertebrates, omnivores/scavengers and predators showed some increases, while non-selective deposit feeders and filter feeders decreased. At the ecosystem level, results show that the total ecosystem activity, the ascendency and the overall omnivorous character of the food-web structure increased after dumping operations, whereas recycling subsequently decreased. Finally, the fine and medium sand habitat offshore from the Seine estuary, which undergoes regular natural physical perturbations, shows a high resilience after a short dumping phase. (C) 2017 Elsevier Ltd. All rights reserved.</p>
},
	issn = {{0025-326X}},
	doi = {{10.1016/j.marpolbul.2017.02.042}},
	author = {Pezy, Jean-Philippe and Raoux, Aurore and Marmin, Stella and Balay, Pierre and Nathalie Niquil and Jean-Claude Dauvin}
}
@article {5037,
	title = {Benthic and fish aggregation inside an offshore wind farm: Which effects on the trophic web functioning?},
	journal = {Ecological indicators},
	volume = {72},
	year = {2017},
	month = {01/2017},
	pages = {33-46},
	abstract = {<p class="rtejustify">As part of the energy transition, the French government is planning the construction of three offshore wind farms in Normandy (Bay of Seine and eastern part of the English Channel, north-western France) in the next years. These offshore wind farms will be integrated into an ecosystem already facing multiple anthropogenic disturbances such as maritime transport, fisheries, oyster and mussel farming, and sediment dredging. Currently no integrated, ecosystem-based study on the effects of the construction and exploitation of offshore wind farms exists, where biological approaches generally focused on the conservation of some valuable species or groups of species. Complementary trophic web modelling tools were applied to the Bay of Seine ecosystem (to the 50 km(2) area covered by the wind farm) to analyse the potential impacts of benthos and fish aggregation caused by the introduction of additional hard substrates from the piles and the turbine scour protections. An Ecopath ecosystem model composed of 37 compartments, from phytoplankton to seabirds, was built to describe the situation {\textquoteleft}{\textquoteleft}before{{\textquoteright}{\textquoteright}} the construction of the wind farm. Then, an Ecosim projection over 30 years was performed after increasing the biomass of targeted benthic and fish compartments. Ecological Network Analysis (ENA) indices were calculated for the two periods, {\textquoteleft}{\textquoteleft}before{{\textquoteright}{\textquoteright}} and {\textquoteleft}{\textquoteleft}after{{\textquoteright}{\textquoteright}}, to compare network functioning and the overall structural properties of the food web. Our main results showed (1) that the total ecosystem activity, the overall system omnivory (proportion of generalist feeders), and the recycling increased after the construction of the wind farm; (2) that higher trophic levels such as piscivorous fish species, marine mammals, and seabirds responded positively to the aggregation of biomass on piles and turbine scour protections; and (3) a change in keystone groups after the construction towards more structuring and dominant compartments. Nonetheless, these changes could be considered as limited impacts of the wind farm installation on this coastal trophic web structure and functioning. (C) 2016 Elsevier Ltd. All rights reserved.</p>
},
	issn = {{1470-160X}},
	doi = {10.1016/j.ecolind.2016.07.037},
	author = {Raoux, Aurore and Samuele Tecchio and Pezy, Jean-Philippe and G{\'e}raldine Lassalle and Degraer, Steven and Wilhelmsson, Dan and Cachera, Marie and Ernande, Bruno and Le Guen, Camille and Haraldsson, Matilda and Karine Granger{\'e} and Le Loc{\textquoteright}h, Francois and Dauvin, Jean-Claude and Nathalie Niquil}
}
@article {8152,
	title = {Contamination and depuration of Paralytic Shellfish Poisoning by Acanthocardia tuberculata cockles and Callista chione clams in Moroccan waters},
	journal = {Journal of Materials and Environmental Sciences},
	volume = {8},
	year = {2017},
	pages = {4634-4641},
	abstract = {This study of\&nbsp;Gymnodinium catenatum\&nbsp;was conducted across two sampling stations; M{\textquoteright}diq bay and Oued Laou estuary during the period from July 2007 to May 2009.\&nbsp;Gymnodinium catenatum\&nbsp;blooms occurred after a rainfall event in autumn and early winter. Statically analyses showed a positive correlation with rainfall. During January 2008, the\&nbsp;G. catenatum\&nbsp;bloom resulted in contamination of tuberculate cockles and sweet clam by Paralytic Shellfish Poisoning (PSP) toxins. In the Oued Laou estuary, the levels of these toxins in shellfish went beyond the normative threshold for consumption of shellfish, (80\&nbsp;μg SXTeq. /100g of meat) and reached (710 {\textpm} 82.07) and (198 {\textpm} 6.56)\&nbsp;μg SXTeq. /100g of meat in cockles and sweet clam respectively. In M{\textquoteright}diq bay, concentrations of PSP toxins in the meat of these two shellfish were lower (256.57 {\textpm} 12.22\&nbsp;μg SXTeq. /100g and 80.66 {\textpm} 8.14\&nbsp;μg SXTeq. /100g of meat in tuberculate cockles and sweet clam respectively. An experimental test of depuration of tuberculate cockles and sweet clam contaminated by the PSP toxins was conducted in laboratory conditions in the first week of January 2008. The results showed partial and progressive elimination of PSP toxins in two shellfish species over time. In the tuberculate cockle, the elimination of PSP appears to be slower compared with the sweet clam; it took 120 days to reach levels of 80\&nbsp;μg SXTeq. /100g of meat, on the other hand only 3 days were needed to reach this safe concentration in the sweet clam.},
	author = {B. Rijal Leblad and H. Nhhala and M. Daoudi and M. Marhraoui and M. K. Ouelad Abdellah and Beno{\^\i}t V{\'e}ron and H. Er-Raioui}
}
@article {5906,
	title = {Distribution and abundance of skates ({Bathyraja} spp.) on the {Kerguelen} {Plateau} through the lens of the toothfish fisheries},
	journal = {Fisheries Research},
	volume = {186},
	year = {2017},
	pages = {65{\textendash}81},
	abstract = {<p>Three species of skate, Bathyraja eatonii, B. irrasa and B. murrayi, are commonly taken as incidental by-catch in Patagonian toothfish (Dissostichus eleginoides) longline and trawl fisheries, and the mackerelicefish (Champsocephalus gunnari) trawl fishery on the Kerguelen Plateau (KP) in the southern IndianOcean. Data from fishery observations for 1997{\textendash}2014 shows that the three skates were widely distributedacross the Kerguelen Plateau, showing different spatial distributions, linked mainly with depth. Off HeardIsland and McDonald Islands (HIMI), in the southern part of the KP, B. eatonii and B. irrasa were mostabundant to the north and northwest of Heard Island, out to the edge of the Australian Exclusive EconomicZone (EEZ), and were caught down to depths of 1790 m and 2059 m respectively. The smallest species, B.murrayi, occurred mainly in the shallower waters down to 550 m, and was most abundant to the northand northeast, close to Heard Island. Around Kerguelen Islands, in the northern part of the KP, skateswere most abundant between the 500 m and 1000 m contours circling and extending from the islands.Catch rates were modelled using zero-inflated GAMs and GLMs. The catch rates of skates from thetrawl fisheries in the Australian EEZ surrounding Heard Island and McDonald Islands have shown littleevidence of depletion on the main trawl fishing grounds, although there is evidence of a decrease inthe average total length of B. eatonii. The marine reserves and the conservation measures employed bythe Commission for the Conservation of Antarctic Marine Living Resources in the HIMI fisheries, appearto provide effective protection for the skates, at least in the shallower waters where the trawl fisheriesoperate. B. irrasa taken in the deeper waters where longline fishing occurs have shown a slight declinein catch rate over the years of the HIMI fishery. Although all skates are returned to the water from thisfishery, survival rates are unknown and careful monitoring should continue to assess the status of thesestocks. There appears to be little change in the abundance of the skate species at Kerguelen in the timeperiod.This study provides the first review of skate by-catch across both the HIMI and Kerguelen fisheries.Ongoing monitoring of species specific by-catch levels and further research to determine the importantlife history parameters of these species are required, particularly for B. irrasa which is taken in both trawland longline fisheries.</p>
},
	issn = {01657836},
	doi = {10.1016/j.fishres.2016.07.022},
	url = {http://linkinghub.elsevier.com/retrieve/pii/S016578361630234X},
	author = {Nowara, G.B. and Burch, P. and Nicolas Gasco and Welsford, D.C. and Lamb, T.D. and Charlotte Chazeau and Guy Duhamel and Patrice Pruvost and Wotherspoon, S. and Candy, S.G.}
}
@article {4796,
	title = {DNA Metabarcoding of Amazonian Ichthyoplankton Swarms},
	journal = {PLoSOne},
	volume = {Jan 17;12},
	year = {2017},
	month = {01/2017},
	pages = {:e0170009},
	abstract = {<p>Tropical rainforests harbor extraordinary biodiversity. The Amazon basin is thought to hold 30\% of all river fish species in the world. Information about the ecology, reproduction, and recruitment of most species is still lacking, thus hampering fisheries management and successful conservation strategies. One of the key understudied issues in the study of population dynamics is recruitment. Fish larval ecology in tropical biomes is still in its infancy owing to identification difficulties. Molecular techniques are very promising tools for the identification of larvae at the species level. However, one of their limits is obtaining individual sequences with large samples of larvae. To facilitate this task, we developed a new method based on the massive parallel sequencing capability of next generation sequencing (NGS) coupled with hybridization capture. We focused on the mitochondrial marker cytochrome oxidase I (COI). The results obtained using the new method were compared with individual larval sequencing. We validated the ability of the method to identify Amazonian catfish larvae at the species level and to estimate the relative abundance of species in batches of larvae. Finally, we applied the method and provided evidence for strong temporal variation in reproductive activity of catfish species in the Ucayal{\'\i} River in the Peruvian Amazon. This new time and cost effective method enables the acquisition of large datasets, paving the way for a finer understanding of reproductive dynamics and recruitment patterns of tropical fish species, with major implications for fisheries management and conservation.</p>
},
	author = {Maggia, M. E. and Vigouroux, Y. and Renno, Jean-Francois and Fabrice Duponchelle and Desmarais, E and Jesus Nu{\~n}ez-Rodriguez and Garc{\'\i}a-D{\'a}vila, C and Carvajal-Vallejos, F M and Paradis, Emmanuel and Martin, Jean-Fran{\c c}ois and Mariac, C{\'e}dric}
}
@article {6667,
	title = {Dynamics of particulate organic matter composition in coastal systems: A spatio-temporal study at multi-systems scale},
	journal = {Progress in Oceanography},
	volume = {156},
	year = {2017},
	pages = {221-239},
	abstract = {In coastal systems, the multiplicity of sources fueling the pool of particulate organic matter (POM) leads to divergent estimations of POM composition. Eleven systems (two littoral systems, eight embayments and semi-enclosed systems and one estuary) distributed along the three maritime fa{\c c}ades of France were studied for two to eight years in order to quantify the relative contribution of organic matter sources to the surface-water POM pool in coastal systems. This study was based on carbon and nitrogen elemental and isotopic ratios, used for running mixing models. The POM of the estuary is dominated by terrestrial material (93\% on average), whereas the POM of the other systems is dominated by phytoplankton (84\% on average). Nevertheless, for the latter systems, the POM composition varies in space, with (1) systems where POM is highly composed of phytoplankton (>=93\%), (2) systems characterized by a non-negligible contribution of benthic (8{\textendash}19\%) and/or river (7{\textendash}19\%) POM sources, and (3) the Mediterranean systems characterized by the contribution of diazotroph organisms (ca. 14\%). A continent-to-ocean gradient of river and/or benthic POM contribution is observed. Finally, time series reveal (1) seasonal variations of POM composition, (2) differences in seasonality between systems, and (3) an inshore-offshore gradient of seasonality within each system that were sampled at several stations. Spatial and seasonal patterns of POM composition are mainly due to local to regional processes such as hydrodynamics and sedimentary hydrodynamic (e.g. resuspension processes, changes in river flows, wind patterns influencing along-shore currents) but also due to the geomorphology of the systems (depth of the water column, distance to the shore). Future studies investigating the link between these forcings and POM composition would help to better understand the dynamics of POM composition in coastal systems. {\textcopyright} 2017 Elsevier Ltd},
	keywords = {bacterium, benthos, biogeochemistry, Biological materials, C and n stable isotopes, C:N ratio, Carbon, carbon isotope, Coastal systems, coastal zone, Fluid dynamics, France, geomorphology, Hydrodynamics, Isotopes, isotopic ratio, Mediterranean sea, Meta analysis, meta-analysis, Mixing, Mixing models, nitrogen isotope, Organic compounds, particulate organic matter, Particulate organic matters, Phytoplankton, prokaryote, Rivers, seasonality, spatiotemporal analysis, stable isotope, Surface water, Surface waters, terrestrial deposit, Time series},
	issn = {00796611},
	doi = {10.1016/j.pocean.2017.03.001},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0079661116301914},
	author = {Li{\'e}nart, Camilla and Savoye, Nicolas and Bozec, Yann and Elsa Breton and Conan, Pascal and David, Val{\'e}rie and Eric Feunteun and Karine Granger{\'e} and Kerherv{\'e}, P. and Lebreton, B. and S{\'e}bastien Lefebvre and St{\'e}phane L{\textquoteright}Helguen and Mousseau, Laure and Raimbault, P and Richard, P. and Riera, P. and Sauriau, P.-G. and Gauthier Schaal and Aubert, F. and Aubin, S. and Bichon, S. and Boinet, C. and Bourasseau, L. and Br{\'e}ret, M. and Caparros, J. and Cariou, T. and Charlier, K. and Claquin, P. and Vincent Cornille and Corre, A.-M. and Costes, L. and Crispi, O. and Muriel Crouvoisier and Czamanski, M. and Del Amo, Y. and Derriennic, H. and Dindinaud, F. and Durozier, M. and Hanquiez, V. and Antoine Nowaczyk and Devesa, J. and Ferreira, S. and Fornier, M. and Garcia, F. and Garcia, N. and Geslin, S. and Emilie Grossteffan and Gueux, A. and Guillaudeau, J. and Guillou, G. and Joly, O. and Lachauss{\'e}e, N. and Lafont, M. and Lamoureux, J. and Lecuyer, E. and Lehodey, J.-P. and Lemeille, D. and Leroux, C. and Mac{\'e}, E. and Maria, E. and Pineau, P. and Petit, F. and Pujo-Pay, M. and Rimelin-Maury, P. and Sultan, E.}
}
@article {5026,
	title = {The impact of suspended oyster farming on nitrogen cycling and nitrous oxide production in a sub-tropical Australian estuary},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {192},
	year = {2017},
	pages = {117 - 127},
	abstract = {<p>In this study we quantified nitrate (NO3-) reduction (denitrification, anammox and DNRA) and N2O production in sediments and epibiont communities associated with Sydney Rock Oyster (Saccostrea glomerata) farming. In sediments beneath an active suspended oyster farm, DNRA accounted for 98\% of NO3- reduction with rates of up to 169\&nbsp;{\textpm}\&nbsp;45\&nbsp;μmol\&nbsp;N m-2 h-1. Much of this DNRA was fuelled by NO3- derived from nitrification. Reference sediments had significantly lower DNRA rates of 83.8\&nbsp;{\textpm}\&nbsp;28.2\&nbsp;μmol\&nbsp;N m-2 h-1, however this constituted 96\% of the sites total NO3- reduction. Fatty acid analysis showed that sediment organic matter was more labile in the oyster impacted sediments, facilitating subtle shifts in sediment oxygen demand which increased the Fe2+ availability with respect to the reference sediments. The difference in DNRA rate between the sites was attributed to autotrophic oxidation of soluble Fe2+ in sediments underlying the oyster cultures. DNRA was absent in the oyster shell epibiont communities and rates of anammox and denitrification were lower than in the sediments. Production of NH4+ from the oysters and their associated epibionts was larger than DNRA and reached a rate of 206.2\&nbsp;μmol\&nbsp;N m-2 h-1. Nitrous oxide production rates were generally low compared to other aquaculture systems and the net flux of N2O for the combined oyster cultivation system (i.e. sediments plus epibionts) was negative, i.e. there was N2O consumption in the sediments beneath the oysters. Overall, subtropical suspended oyster farming systems favour inorganic N retention over N loss.</p>
},
	keywords = {Dissimilatory nitrate reduction to ammonium},
	issn = {0272-7714},
	doi = {http://dx.doi.org/10.1016/j.ecss.2017.05.007},
	url = {http://www.sciencedirect.com/science/article/pii/S0272771417301592},
	author = {Dirk V. Erler and David T. Welsh and William W. Bennet and Tarik Meziane and C{\'e}dric Hubas and Daniele Nizzoli and Angus J.P. Ferguson}
}
@article {5152,
	title = {Inter and intra-specific growth and domoic acid production in relation to nutrient ratios and concentrations in Pseudo-nitzschia: phosphate an important factor},
	journal = {Harmful Algae},
	volume = {64},
	year = {2017},
	pages = {11-19},
	abstract = {<p>The factors responsible for inducing the synthesis of toxins and responses from toxic phytoplankton<br />
blooms remain unclear. In this study we compare the influence of genotypic (at both the intra and<br />
interspecific levels) and environmental factors (nutrient concentration and ratio) on growth (in terms of<br />
cell densities) and domoic acid (DA) production in three Pseudo-nitzschia species: P. australis, P.pungens<br />
and P.fradulenta. A strong phosphate effect was detected. More precisely, a low initial concentration in<br />
phosphate, even at high initial nitrogen and silicate concentrations, induced the highest DA<br />
concentrations and the lowest cell densities in all strains/species studied. In contrast, a low initial<br />
concentration of nitrogen and silicate combined, with a higher phosphate concentration resulted in low<br />
cell densities, but without high DA production. Inter-species effects were also observed in DA production,<br />
where P. australis represented the most toxigenic species of all. Intra-specific variations were only<br />
moderate, except for a recently isolated P. australis strain, suggesting the influence of time since isolation<br />
on the physiology and DA production of Pseudo-nitzschia species. Overall, the lack of strong interaction<br />
between environmental and genotypic factors showed that the various genotypes investigated did not<br />
extensively diverge in their ability to respond (in terms of DA production and cell densities) to contrasting<br />
nutrient supply.</p>
},
	doi = {http://dx.doi.org/10.1016/j.hal.2017.03.001},
	url = {https://www.sciencedirect.com/science/article/pii/S1568988316303687},
	author = {Lema, Kimberley A. and Latimier, Marie and N{\'e}zan, Elisabeth and Juliette Fauchot and Le Gac, Mickael}
}
@article {8571,
	title = {Marine Mammals Exploring the Oceans Pole to Pole: A Review of the MEOP Consortium},
	journal = {Oceanography},
	volume = {30},
	year = {2017},
	month = {Jan-06-2017},
	pages = {132 - 138},
	issn = {10428275},
	doi = {10.5670/oceanog10.5670/oceanog.2017.234},
	url = {https://tos.org/oceanography/},
	author = {Treasure, Anne and Roquet, Fabien and Ansorge, Isabelle and Bester, Marth{\'a}n and Boehme, Lars and Bornemann, Horst and Charrassin, Jean-Beno{\^\i}t and Chevallier, Damien and Costa, Daniel and Fedak, Mike and Guinet, Christophe and Hammill, Mike and Harcourt, Robert and Hindell, Mark and Kovacs, Kit and Lea, Mary-Anne and Lovell, Phil and Lowther, Andrew and Lydersen, Christian and McIntyre, Trevor and McMahon, Clive and Muelbert, M{\^o}nica and Nicholls, Keith and Picard, Baptiste and Reverdin, Gilles and Trites, Andrew and Williams, Guy and de Bruyn, P.J. Nico}
}
@article {5560,
	title = {Morphodynamics of an eroding beach and foredune in the Mekong River delta: Implications for deltaic shoreline change},
	journal = {Continental Shelf Research},
	volume = {147},
	year = {2017},
	pages = {155 - 164},
	abstract = {<p>River delta shorelines composed of sand may be characterized by complex spatial and temporal patterns of erosion and accretion even when sand supply is readily available. This is especially the case for deltas with multiple mouths subject to significant wave and tide influence. High-resolution topographical and wave and current measurements were conducted from 2010 to 2012 at Ba D{\^o}ng beach, a popular resort located on the largest of the multiple inter-distributary plains of the Mekong River delta. Ba D{\^o}ng beach is a mesotidal, multiple bar-trough system. The upper beach corresponds to the current active beach ridge in the sequence of ridges that have marked the progradation of the inter-distributary delta plains, and is capped by a low foredune that protects villages and agricultural land from marine flooding. During the low river-flow season, the beach is characterized by Northeast monsoon waves and strong longshore currents that transport sediment towards the southwest. Weaker longshore currents towards the northeast are generated by Southwest monsoon waves during the high river-flow season. Ba D{\^o}ng beach underwent strong erosion between 2010 and 2012, following a phase of massive accretion. In 2012, this erosion resulted in breaching of the foredune, contributing to concerns that the Mekong delta had become vulnerable to retreat. The local erosion at Ba D{\^o}ng needs to be considered, however, in the broader context of delta shoreline morphodynamics, which involves space- and time-varying patterns of beach accretion and erosion. These patterns are the present expressions of plan-view beach-ridge morphology in the delta, which is characterized by flaring and truncations that reflect changing beach morphodynamics in the course of deltaic progradation. We surmise that these patterns are related to complex interactions involving river water and sediment discharge, waves and wave-generated longshore currents, tidal currents, and shoreline orientation.</p>
},
	keywords = {Asian monsoon waves, Beach morphodynamics, Beach ridges, Delta erosion and accretion, Mekong delta},
	issn = {0278-4343},
	doi = {https://doi.org/10.1016/j.csr.2017.06.018},
	url = {http://www.sciencedirect.com/science/article/pii/S0278434316305271},
	author = {E.J. Anthony and P. Dussouillez and Franck Dolique and M. Besset and G. Brunier and V.L. Nguyen and M. Goichot}
}
@article {4756,
	title = {Nuclear and membrane progestin receptors in the European eel: characterization and expression in vivo through spermatogenesis},
	journal = {Comparative Biochemistry and Physiology, Part A},
	volume = {207},
	year = {2017},
	pages = {79-92},
	author = {Morini, Marina and Penaranda, David S and V{\'\i}lchez, M C and Nourizadeh-Lillabadi, R and Anne-Gaelle Lafont and Sylvie Dufour and Asturiano, J F and Weltzien, Finn-Arne and Perez, Luz}
}
@article {6902,
	title = {The Pax gene family: Highlights from cephalopods},
	journal = {PLOS ONE},
	volume = {12},
	year = {2017},
	month = {Feb-03-2017},
	pages = {e0172719},
	doi = {10.1371/journal.pone.017271910.1371},
	url = {https://dx.plos.org/10.1371/journal.pone.0172719},
	author = {Navet, Sandra and Buresi, Auxane and S{\'e}bastien Baratte and Aude Andouche and Laure Bonnaud-Ponticelli and Yann Bassaglia},
	editor = {Schubert, Michael}
}
@article {4687,
	title = {Phylogeography of the reef-building polychaetes of the genus Phragmatopoma in the western Atlantic Region},
	journal = {Journal of Biogeography},
	volume = {44},
	year = {2017},
	month = {06/2017},
	pages = {1612-1625},
	abstract = {<p>Aim</p>

<p>To verify the synonymy of the reef-building polychaete Phragmatopoma caudata (described for the Caribbean) and Phragmatopoma lapidosa (described for Brazil) using molecular data. To evaluate the patterns of genetic diversity and connectivity among populations from Florida to South Brazil.</p>

<p>Location</p>

<p>Intertidal zone in the western Atlantic biogeographical Region: Brazil, eastern Caribbean and Florida (USA).</p>

<p>Methods</p>

<p>DNA sequence data from one mitochondrial (cox-1) and one nuclear ribosomal (ITS-1) loci were obtained from 11 populations of P. caudata spanning the coasts of Brazil, eastern Caribbean and Florida. Phylogenetic relationships among populations of P. caudata and other members of the genus were inferred by Bayesian methods. Population differentiation was evaluated by Bayesian analysis of population structure (baps), AMOVA and pairwise φst. Demographic history was inferred by Bayesian skyline plots.</p>

<p>Results</p>

<p>Phylogenetic inference supported the interpretation of a single species of Phragmatopoma spanning the Brazilian and Caribbean Provinces of the western Atlantic Region. Little population structure was observed across the species distribution, with the exception of the Florida population. The baps analysis supported a 2-population model, with population differentiation being strong and significant between Florida and all other Atlantic populations for cox-1, and significant between Florida and most populations for ITS-1. Differences in genetic diversity were not significant between Caribbean and Brazilian populations, although several populations in Brazil had low values for diversity indices. Bayesian skyline plots indicate population expansion starting at c.\&nbsp;200\&nbsp;ka.</p>

<p>Main conclusions</p>

<p>Phragmatopoma caudata is able to maintain genetic connectivity across most of its geographical range, with population differentiation being observed only between Florida and all other localities, possibly due to ecological speciation in the transition zone between tropical and subtropical environments. Long-distance connectivity across much of the species range is likely the result of long-lived larvae that are tolerant to a wide range of environmental conditions.</p>
},
	doi = {10.1111/jbi.12938},
	author = {Flavia Nunes and Alain Van Wormhoudt and Larisse Faroni Perez and J{\'e}r{\^o}me Fournier}
}
@article {6811,
	title = {Saving Our Marine Archives},
	journal = {Eos},
	year = {2017},
	month = {Dec-02-2018},
	doi = {10.1029/2017EO068159},
	url = {https://eos.org/project-updates/saving-our-marine-archives},
	author = {Dassi{\'e}, Emilie and DeLong, Kristine and Kilbourne, Hali and Williams, Branwen and Abram, Nerilie and Brenner, Logan and Brahmi, Chlo{\'e} and Cobb, Kim and Corr{\`e}ge, Thierry and Dissard, Delphine and Emile-Geay, Julien and Evangelista, Heitor and Evans, Michael and Farmer, Jesse and Felis, Thomas and Gagan, Michael and Gillikin, David and Goodkin, Nathalie and Khodri, Myriam and Lavagnino, Ana and LaVigne, Mich{\`e}le and Claire E. Lazareth and Linsley, Braddock and Lough, Janice and McGregor, Helen and Nurhati, Intan and Ouellette, Gilman and Perrin, Laura and Raymo, Maureen and Rosenheim, Brad and Sandstrom, Michael and Sch{\"o}ne, Bernd and Sifeddine, Abdelfettah and Stevenson, Samantha and Thompson, Diane and Waite, Amanda and Wanamaker, Alan and Wu, Henry}
}
@article {5046,
	title = {Towards ecosystem-based management: identifying operational food-web indicators for marine ecosystems},
	journal = {ICES Journal of Marine Science},
	year = {2017},
	pages = {fsw230},
	author = {Tam, Jamie C and Link, Jason S and Rossberg, Axel G. and Rogers, Stuart I and Levin, Philip S and Rochet, Marie-Jo{\"e}lle and Bundy, Alida and Belgrano, Andrea and Libralato, Simone and Maciej Tomasz Tomczak and van de Wolfshaar, K and Pranovi, F and Gorokhova, E and Large, S I and Nathalie Niquil and Greenstreet, SPR and Druon, JN and Lesutiene, J and Johansen, M and Preciado, I and Patr{\'\i}cio, Joana and Palialexis, A and Tett, P and Johansen, GO and Houle, J and Rindorf, A}
}
@article {5044,
	title = {Uses of innovative modeling tools within the implementation of the marine strategy framework directive},
	journal = {Bridging the Gap Between Policy and Science in Assessing the Health Status of Marine Ecosystems},
	year = {2017},
	pages = {75},
	author = {Lynam, Christopher P. and Uusitalo, Laura and Patr{\'\i}cio, Joana and Piroddi, Chiara and Queir{\'o}s, Ana M and Teixeira, Heliana and Rossberg, Axel G. and Sagarminaga, Yolanda and Hyder, Kieran and Nathalie Niquil and M{\"o}llmann, C and Wilson, C and Chust, Guillem and Galpasoro, I and Forster, R and Verissimo, H and Tedesco, Letizia and Revilla, M and Neville, Suzanna}
}
@article {5045,
	title = {What Is Marine Biodiversity? Towards Common Concepts and Their Implications for Assessing Biodiversity Status. Front},
	journal = {Bridging the Gap Between Policy and Science in Assessing the Health Status of Marine Ecosystems},
	volume = {3},
	year = {2017},
	pages = {377},
	author = {Cochrane, SKJ and Andersen, JH and Berg, T and Hugues Blanchet and Borja, A and Carstensen, J and Elliott, M and Hummel, H and Nathalie Niquil and Renaud, PE}
}
@article {5039,
	title = {Evaluating ecosystem-level anthropogenic impacts in a stressed transitional environment: The case of the Seine estuary},
	journal = {ECOLOGICAL INDICATORS},
	volume = {61},
	year = {2016},
	month = {02/2016},
	pages = {833-845},
	abstract = {<p class="rtejustify">During 2002-2005, a new container terminal in the commercial harbour of Le Havre, named "Port2000", was built on the northern flank of the Seine estuary, northern France. This extension is already known to have modified the estuary current and sediment dynamics, as well as reducing biomass of the suprabenthos assemblage, for the whole downstream part of the system. However, studies on other biotic communities were largely inconclusive, and an ecosystem-wide analysis was still lacking. Here, we performed a before/after study of ecosystem dynamics of the different habitats of the Seine estuary, using a Linear Inverse Modelling technique (LIM-MCMC) to estimate all flows occurring in the food web. Ecological Network Analysis indices were calculated, summarising ecosystem functioning traits and giving indications about the habitat health status. Results showed that the southern flank (FS, Fosse Sud) exhibits all characteristics to be considered as the least stressed habitat of the estuary: system activity and functional specialisation of flows were stable between periods, ecosystem recycling processes and detrital dynamics were also stable; an increase in trophic specialisation (decrease in system omnivory) was the only change confirming a general ecological succession. The northern flank (FN, Fosse Nord), where the actual terminal was built, showed a food web with increased importance of lower trophic levels (increased detritivory and carbon recycling), increased stability and flow efficiency, but possibly regressed to a previous step in ecological succession. In the central navigation channel (CH), patterns of network indices were overall inconclusive and the general image is one of a constantly shifting food web, a condition possibly caused by the year-round dredging activities. The functioning of the Seine estuary especially of FN and FS - seems to have been modified by the combination of harbour construction and the related mitigation measures. Network indices partially captured this combination of changes and, although not fully operational yet, they are promising tools to comply with the European Union mandate of defining ecosystem health status. (c) 2015 Elsevier Ltd. All rights reserved.</p>
},
	issn = {{1470-160X}},
	doi = {{10.1016/j.ecolind.2015.10.036}},
	author = {Samuele Tecchio and Chaalali, Aur{\'e}lie and Raoux, Aurore and Rius, Armonie Tous and Lequesne, Justine and Girardin, Valerie and G{\'e}raldine Lassalle and Cachera, Marie and Riou, P and Lobry, Jeremy and Dauvin, Jean-Claude and Nathalie Niquil}
}
@article {5038,
	title = {From species distributions to ecosystem structure and function: A methodological perspective},
	journal = {ECOLOGICAL MODELLING},
	volume = {334},
	year = {2016},
	month = {08/2016},
	pages = {78-90},
	abstract = {<p>{As species biology and ecology is profoundly influenced by climate, any climatic alteration may have severe consequences on marine pelagic ecosystems and their food webs. It remains challenging to estimate the influence of climate on both structural and functional properties of food webs. In this study, we proposed an innovative approach to assess the propagating effects of climate change on ecosystem food web. The approach is based on a sensitivity analysis of a food-web model, a linear inverse model using a Monte Carlo method coupled with a Markov Chain, in which changes in the values of parameters are driven by external Ecological Niche Model outputs. Our sensitivity analysis was restricted to parameters regarding a keystone functional group in marine ecosystems, i.e. small pelagic fish. At the ecosystem level, the consequences were evaluated using both structural and functional ecological network indices. The approach is innovative as it is the first time that these three methods were combined to assess ecological network indices sensitivity to future climatic pressure. This coupling method was applied on the French continental shelf of the Bay of Biscay for which a food-web model already exists and where future changes in the distribution of small pelagic fish have already been examined through model building and projections. In response to the sensitivity analysis corresponding to an increase in small pelagics production only, our results suggested a more active system with an intense plankton-small pelagics-seabirds chain and an efficient recycling to maximize detritus use in the system in relation with detritus export. All results combined together seemed to be in favor of a system adapting to sustain the tested increase in production of small pelagic planktivores. Finally, regarding the innovative combination of numerical tools presented, even if further investigations are still necessary to get a more realistic view of cumulative effects resulting from one given pressure (or more) on a food web (e.g. altering different biological compartments at the same time), the Ecological Network Analysis indices values showed a higher variability under the scenarios of change. Our study thus pointed out a promising methodology to assess propagating changes in structural and functional ecosystem properties. (C) 2016 Elsevier B.V. All rights reserved.}</p>
},
	issn = {{0304-3800}},
	doi = {{10.1016/j.ecolmodel.2016.04.022}},
	author = {Chaalali, Aur{\'e}lie and Gr{\'e}gory Beaugrand and Virginie Raybaud and G{\'e}raldine Lassalle and Saint-B{\'e}at, B and Le Loc{\textquoteright}h, Francois and Bopp, Laurent and Samuele Tecchio and Safi, Georges and Chifflet, Marina and Lobry, Jeremy and Nathalie Niquil}
}
@article {5813,
	title = {{Global impacts of the 1980s regime shift}},
	journal = {Global Change Biology},
	volume = {22},
	year = {2016},
	abstract = {<p>{\textcopyright} 2016 John Wiley {\&amp;} Sons Ltd. Despite evidence from a number of Earth systems that abrupt temporal changes known as regime shifts are important, their nature, scale and mechanisms remain poorly documented and understood. Applying principal component analysis, change-point analysis and a sequential t-test analysis of regime shifts to 72 time series, we confirm that the 1980s regime shift represented a major change in the Earth{\textquoteright}s biophysical systems from the upper atmosphere to the depths of the ocean and from the Arctic to the Antarctic, and occurred at slightly different times around the world. Using historical climate model simulations from the Coupled Model Intercomparison Project Phase 5 (CMIP5) and statistical modelling of historical temperatures, we then demonstrate that this event was triggered by rapid global warming from anthropogenic plus natural forcing, the latter associated with the recovery from the El Chich{\'o}n volcanic eruption. The shift in temperature that occurred at this time is hypothesized as the main forcing for a cascade of abrupt environmental changes. Within the context of the last century or more, the 1980s event was unique in terms of its global scope and scale; our observed consequences imply that if unavoidable natural events such as major volcanic eruptions interact with anthropogenic warming unforeseen multiplier effects may occur.</p>
},
	keywords = {Climate, Earth systems, Global change, Regime shift, Statistical analysis, Time series, Volcanic forcing},
	issn = {13652486},
	doi = {10.1111/gcb.13106},
	author = {Philip Chris Reid and Renata E. Hari and Gr{\'e}gory Beaugrand and David M. Livingstone and Christoph Marty and Dietmar Straile and Jonathan Barichivich and Goberville, Eric and Rita Adrian and Yasuyuki Aono and Ross Brown and James Foster and Pavel Groisman and Pierre H{\'e}laou{\"e}t and Huang-Hsiung Hsu and Richard R Kirby and Jeff Knight and Alexandra Kraberg and Jianping Li and Tzu-Ting Lo and Ranga B. Myneni and Ryan P. North and Alan J. Pounds and Tim Sparks and Ren{\'e} St{\"u}bi and Yongjun Tian and Karen H. Wiltshire and Dong Xiao and Zaichun Zhu}
}
@article {4491,
	title = {Nervous system development in cephalopods: How egg yolk-richness modifies the topology of the mediolateral patterning system.},
	journal = {Dev Biol},
	volume = {415},
	year = {2016},
	month = {2016 Jul 1},
	pages = {143-56},
	abstract = {<p>Cephalopods possess the most complex centralized nervous system among molluscs and the molecular determinants of its development have only begun to be explored. To better understand how evolved their brain and body axes, we studied Sepia officinalis embryos and investigated the expression patterns of neural regionalization genes involved in the mediolateral patterning of the neuroectoderm in model species. SoxB1 expression reveals that the embryonic neuroectoderm is made of several distinct territories that constitute a large part of the animal pole disc. Concentric nkx2.1, pax6/gsx, and pax3/7/msx/pax2/5/8 positive domains subdivide this neuroectoderm. Looking from dorsal to ventral sides, the sequence of these expressions is reminiscent of the mediolateral subdivision in model species, which provides good evidence for "mediolateral patterning" conservation in cephalopods. A specific feature of cephalopod development, however, includes an unconventional orientation to this mediolateral sequence: median markers (like nkx2.1) are unexpectedly expressed at the periphery of the cuttlefish embryo and lateral markers (like Pax3/7) are expressed centrally. As the egg is rich with yolk, the lips of the blastopore (that classically organizes the neural midline) remain unclosed at the lateral side of the animal pole until late stages of organogenesis, therefore reversing the whole embryo topology. These findings confirm - by means of molecular tools - the location of both ventral and dorsal poles in cephalopod embryos.</p>
},
	issn = {1095-564X},
	doi = {10.1016/j.ydbio.2016.04.027},
	author = {Buresi, Auxane and Aude Andouche and Navet, S and Yann Bassaglia and Laure Bonnaud-Ponticelli and S{\'e}bastien Baratte}
}
@article {4597,
	title = {Parental influence in relation to growth and survival in larval families of Doncella Pseudoplatystoma punctifer},
	journal = {Folia Amaz{\'o}nica},
	volume = {25},
	year = {2016},
	pages = {77-82},
	author = {Castro-Ruiz, D and Baras, Etienne and Fern{\'a}ndez, C and Sophie Qu{\'e}rouil and Chota-Macuyama, Werner and F. Duponchelle and Renno, J-F and Darias, Maria and Garc{\'\i}a-D{\'a}vila, C and Jesus Nu{\~n}ez-Rodriguez}
}
@article {4280,
	title = {Trans-Amazonian natal homing in giant catfish},
	journal = {Journal of Applied Ecology},
	volume = {53},
	year = {2016},
	pages = {1511-1520},
	abstract = {<p>1.Knowledge of fish migration is a prerequisite to sustainable fisheries management and preservation, especially in large international river basins. In particular, understanding whether a migratory lifestyle is compulsory or facultative, and whether adults home to their natal geographic area is paramount to fully appraise disruptions of longitudinal connectivity resulting from damming.2.In the Amazon, the large migratory catfishes of the Brachyplatystoma genus are apex predators of considerable interest for fisheries. They are believed to use the entire length of the basin to perform their life cycle, with hypothesized homing behaviours. Here we tested these hypotheses, using the emblematic B. rousseauxii as a model species.3.We sampled adults close to major breeding areas in the Amazon basin (upper Madeira and upper Amazonas) and assessed their lifetime movements by measuring variations in 87Sr/86Sr along transverse sections of their otoliths (ear stones) using laser ablation multicollector mass spectrometry (LA-MC-ICPMS).4.We demonstrate that larvae migrate downstream from the Andean piedmont to the lower Amazon, where they grow over a protracted period before migrating upstream as adults. Contrary to prevailing inferences, not all fish spend their nursery stages in the Amazon estuary. By contrast, the passage in the lower or central Amazon seems an obligate part of the life cycle. We further evidence that most adults home to their natal geographic area within the Madeira sub-basin. Such long-distance natal homing is exceptional in purely freshwater fishes.5.Synthesis and applications. By using otolith microchemistry, we were able to demonstrate a seemingly compulsory basin-wide migratory life cycle of large Amazonian catfishes. This makes them the organisms performing the longest migrations (\&gt;8000 km) in fresh waters. This exceptional life history is already jeopardized by two dams recently built in the Madeira River, which block a major migration route and access to a substantial part of their spawning grounds. Major impacts can be anticipated from the current and forthcoming hydroelectric development in the Amazon basin, not only on the populations and fisheries of this apex predator, but also on Amazonian food webs through trophic cascades.This article is protected by copyright. All rights reserved.</p>
},
	keywords = {87Sr/86Sr ratios, Amazon, anthropogenic activities, Brachyplatystoma spp, freshwater fish, giant catfish, hydroelectric dams, Migration, otoliths},
	issn = {1365-2664},
	doi = {10.1111/1365-2664.12665},
	url = {http://dx.doi.org/10.1111/1365-2664.12665},
	author = {Fabrice Duponchelle and Marc Pouilly and Pecheyran, Christophe and Hauser, Marilia and Renno, Jean-Francois and Panfili, Jacques and Darnaude, Audrey M. and Garc{\'\i}a-Vasquez, Aurea and Carvajal-Vallejos, Fernando and Carmen Garc{\'\i}a-D{\'a}vila and Doria, Carolina and B{\'e}rail, Sylvain and Donard, Ariane and Sondag, Francis and Santos, Roberto V. and Jesus Nu{\~n}ez-Rodriguez and Point, David and Labonne, Maylis and Baras, Etienne}
}
@proceedings {3545,
	title = {Artificial reef: Multiscale monitoring of colonization and primary production - R{\'e}cif artificiel: mise en place d{\textquoteright}un suivi de la colonisation a plusieurs {\'e}chelles},
	volume = {1},
	year = {2015},
	month = {01/2015},
	pages = {103-110},
	edition = {M. Boutouil \& S. Leboulanger},
	address = {ESITC Caen},
	isbn = {978-2-95517664-0-5},
	author = {Pascal Claquin and Leroy, Fanny and Anne-Marie Rusig and Isabelle Mussio and Eric Feunteun and Foveau, Aur{\'e}lie and Jean-Claude Dauvin and R{\'e}gis Gallon and Lebrun, J-L and Lestarquit, Mabel and Francis Orvain and Anne-Sophie Martinez and Desoche, E and Napol{\'e}on, Camille and Roussel, D{\'e}borha and Boutoil, Mohamed}
}
@article {3448,
	title = {Bushmeat genetics: setting up a reference framework for the DNA typing of African forest bushmeat.},
	journal = {Mol Ecol Resour},
	volume = {15},
	year = {2015},
	month = {2014 Sep 26},
	pages = {633-651},
	abstract = {<p>The bushmeat trade in tropical Africa represents illegal, unsustainable off-takes of millions of tons of wild game - mostly mammals - per year. We sequenced four mitochondrial gene fragments (cyt b, COI, 12S, 16S) in \&gt;300 bushmeat items representing nine mammalian orders and 59 morphological species from five western and central African countries (Guinea, Ghana, Nigeria, Cameroon and Equatorial Guinea). Our objectives were to assess the efficiency of cross-species PCR amplification and to evaluate the usefulness of our multilocus approach for reliable bushmeat species identification. We provide a straightforward amplification protocol using a single {\textquoteright}universal{\textquoteright} primer pair per gene that generally yielded \&gt;90\% PCR success rates across orders and was robust to different types of meat preprocessing and DNA extraction protocols. For taxonomic identification, we set up a decision pipeline combining similarity- and tree-based approaches with an assessment of taxonomic expertise and coverage of the GENBANK database. Our multilocus approach permitted us to: (i) adjust for existing taxonomic gaps in GENBANK databases, (ii) assign to the species level 67\% of the morphological species hypotheses and (iii) successfully identify samples with uncertain taxonomic attribution (preprocessed carcasses and cryptic lineages). High levels of genetic polymorphism across genes and taxa, together with the excellent resolution observed among species-level clusters (neighbour-joining trees and Klee diagrams) advocate the usefulness of our markers for bushmeat DNA typing. We formalize our DNA typing decision pipeline through an expert-curated query database - DNAbushmeat - that shall permit the automated identification of African forest bushmeat items.</p>
},
	issn = {1755-0998},
	doi = {10.1111/1755-0998.12334},
	author = {Gaubert, Philippe and Njiokou, Flobert and Olayemi, Ayodeji and Pagani, Paolo and Dufour, Sylvain and Danquah, Emmanuel and Nutsuakor, Mac Elikem K and Ngua, Gabriel and Missoup, Alain-Didier and Pablo Tedesco and Dernat, R{\'e}my and Antunes, Agostinho}
}
@article {4823,
	title = {Comparative environmental performance of artisanal and commercial feed use in Peruvian freshwater aquaculture},
	journal = {Aquaculture},
	volume = {435},
	year = {2015},
	pages = {52-66},
	type = {Journal Article},
	issn = {0044-8486},
	doi = {http://dx.doi.org/10.1016/j.aquaculture.2014.08.001},
	url = {http://www.sciencedirect.com/science/article/pii/S0044848614003925},
	author = {Avad{\'\i}, Angel and Pelletier, Nathan and Aubin, Jo{\"e}l and Ralite, St{\'e}phane and Jesus Nu{\~n}ez-Rodriguez and Fr{\'e}on, Pierre}
}
@article {4102,
	title = {DNA Barcoding Indonesian freshwater fishes: challenges and prospects.},
	journal = {DNA barcode},
	volume = {3},
	year = {2015},
	pages = {144-169},
	keywords = {Checklist, DNA barcoding, Southeast Asia},
	author = {Hubert, Nicolas and Kadarusman and Wibowo, A and Fr{\'e}d{\'e}ric Busson and Caruso, D. and Sulandari, S. and Nafiqoh, N and R{\"u}ber, L and Pouyaud, L and Avarre, JC and Herder, F and Hanner, R and Philippe Keith and Hadiaty, Renny}
}
@article {3862,
	title = {Gonadal transcriptome analysis of wild contaminated female European eels during artificial gonad maturation.},
	journal = {Chemosphere},
	volume = {139},
	year = {2015},
	month = {2015 Jul 6},
	pages = {303-309},
	abstract = {<p>Since the early 1980s, the population of European eels (Anguilla anguilla) has dramatically declined. Nowadays, the European eel is listed on the red list of threatened species (IUCN Red List) and is considered as critically endangered of extinction. Pollution is one of the putative causes for the collapse of this species. Among their possible effects, contaminants gradually accumulated in eels during their somatic growth phase (yellow eel stage) would be remobilized during their reproductive migration leading to potential toxic events in gonads. The aim of this study was to investigate the effects of organic and inorganic contaminants on the gonad development of wild female silver eels. Female silver eels from two sites with differing contamination levels were artificially matured. Transcriptomic analyses by means of a 1000 candidate gene cDNA microarray were performed on gonads after 11weeks of maturation to get insight into the mechanisms of toxicity of contaminants. The transcription levels of several genes, that were associated to the gonadosomatic index (GSI), were involved in mitotic cell division but also in gametogenesis. Genes associated to contaminants were mainly involved in the mechanisms of protection against oxidative stress, in DNA repair, in the purinergic signaling pathway and in steroidogenesis, suggesting an impairment of gonad development in eels from the polluted site. This was in agreement with the fact that eels from the reference site showed a higher gonad growth in comparison to contaminated fish.</p>
},
	issn = {1879-1298},
	doi = {10.1016/j.chemosphere.2015.06.007},
	author = {Baillon, Lucie and Oses, Jennifer and Pierron, Fabien and Bureau du Colombier, Sarah and Caron, Antoine and Normandeau, Eric and Lambert, Patrick and Couture, Patrice and Labadie, Pierre and Budzinski, H{\'e}l{\`e}ne and Sylvie Dufour and Bernatchez, Louis and Baudrimont, Magalie}
}
@article {5043,
	title = {Hydrothermal Fe cycling and deep ocean organic carbon scavenging: Model-based evidence for significant POC supply to seafloor sediments},
	journal = {EARTH AND PLANETARY SCIENCE LETTERS},
	volume = {419},
	year = {2015},
	month = {JUN 1},
	pages = {143-153},
	abstract = {<p class="rtejustify">Submarine hydrothermal venting has recently been identified to have the potential to impact ocean biogeochemistry at the global scale. This is the case because processes active in hydrothermal plumes are so vigorous that the residence time of the ocean, with respect to cycling through hydrothermal plumes, is comparable to that of deep ocean mixing caused by thermohaline circulation. Recently, it has been argued that seafloor venting may provide a significant source of bio-essential Fe to the oceans as the result of a close coupling between Fe and organic carbon in hydrothermal plumes. But a complementary question remains to be addressed: does this same intimate Fe-C-org association in hydrothermal plumes cause any related impact to the global C cycle? To address this, SCOR-InterRidge Working Group 135 developed a modeling approach to synthesize site-specific field data from the East Pacific Rise 9 degrees 50{\textquoteright} N hydrothermal field, where the range of requisite data sets is most complete, and combine those inputs with global estimates for dissolved Fe inputs from venting to the oceans to establish a coherent model with which to investigate hydrothermal C-org cycling. The results place new constraints on submarine Fe vent fluxes worldwide, including an indication that the majority of Fe supplied to hydrothermal plumes should come from entrainment of diffuse flow. While this same entrainment is not predicted to enhance the supply of dissolved organic carbon to hydrothermal plumes by more than similar to 10\% over background values, what the model does indicate is that scavenging of carbon in association with Fe-rich hydrothermal plume particles should play a significant role in the delivery of particulate organic carbon to deep ocean sediments, worldwide. (C) 2015 Elsevier B.V. All rights reserved.</p>
},
	issn = {{0012-821X}},
	doi = {{10.1016/j.epsl.2015.03.012}},
	author = {German, C. R. and Legendre, L and Sander, S. G. and Nathalie Niquil and LutherIII, G. W. and Bharati, L. and Han, X. and Le Bris, Nadine}
}
@article {5041,
	title = {Incorporating food-web parameter uncertainty into Ecopath-derived ecological network indicators},
	journal = {ECOLOGICAL MODELLING},
	volume = {313},
	year = {2015},
	month = {OCT 10},
	pages = {29-40},
	abstract = {<p class="rtejustify">Ecological network analysis (ENA) provides numerous ecosystem level indices offering a valuable approach to compare and categorize the ecological structure and function of ecosystems. The inclusion of ENA methods in Ecopath with Ecosim (EwE) has insured their continued contribution to ecosystem-based management. In EwE, ENA-derived ecological conclusions are currently based on single values of ENA indices calculated from a unique input flow matrix. Here, we document an easy-to-use routine that allows EwE users to incorporate uncertainty in EwE input data into the calculation of ENA indices. This routine, named ENAtool, is a suite of Matlab functions that performs three main steps: (1) import of an existing Ecopath model and its associated parameter uncertainty values in the form of uncertainty intervals into Matlab; (2) generation of an ensemble of Ecopath models with the same structure as the original, and with parameter values varying based on the prescribed uncertainty limits; and (3) calculation of a set of 13 ENA indices for each ensemble member (one set of flow values) and of summary statistics across the whole ensemble. This novel routine offers the opportunity to calculate ENA indices ranges and confidence intervals, and thus to perform quantitative data analyses. An application of ENAtool on a pre-existing Ecopath model of the Bay of Biscay continental shelf is presented, with a focus on the robustness of previously published ENA-based ecological traits of this ecosystem when the newly introduced uncertainty values are added. We also describe the sensitivity of the ENAtool results to both the number of ensemble members used and to the uncertainty interval set around each input parameter. Ecological conclusions derived from EwE, particularly those regarding the comparison of structural and functional elements for a range of ecosystem types or the assessment of ecosystem properties along gradients of environmental conditions or anthropogenic disturbances, will gain in statistical interpretability. (C) 2015 Elsevier B.V. All rights reserved.</p>
},
	issn = {{0304-3800}},
	doi = {{10.1016/j.ecolmodel.2015.05.036}},
	author = {Guesnet, Vanessa and G{\'e}raldine Lassalle and Chaalali, Aur{\'e}lie and Kearney, Kelly and Saint-B{\'e}at, B and Karimi, Battle and Grami, Boutheina and Samuele Tecchio and Nathalie Niquil and Lobry, Jeremy}
}
@article {4202,
	title = {Influence of dietary protein and lipid levels on growth performance and the incidence of cannibalism in Pseudoplatystoma punctifer~(Castelnau, 1855) larvae and early juveniles},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {74{\textendash}82},
	abstract = {<p>The aim of the study was to evaluate the influence of different dietary protein and lipid levels and their ratios on larval growth, survival and the incidence of cannibalism in Pseudoplatystoma punctifer. Larvae were raised in a recirculation system from 3 to 26\&nbsp;days post-fertilization (dpf) (2{\textendash}25\&nbsp;days post hatching, dph) at an initial density of 40 larvae L-1, 27.8\&nbsp;{\textpm}\&nbsp;0.65{\textdegree}C and 0L\&nbsp;:\&nbsp;24D photoperiod. Larvae were fed from 4 to 12 dpf with Artemia nauplii and weaned onto four different compound diets from 13 dpf within 3\&nbsp;days, then fed exclusively with these diets until 26 dpf. These diets contained 30\&nbsp;:\&nbsp;15, 30\&nbsp;:\&nbsp;10, 45\&nbsp;:\&nbsp;15 or 45\&nbsp;:\&nbsp;10 protein\&nbsp;:\&nbsp;lipid (P\&nbsp;:\&nbsp;L) (in \% of dry matter) levels. A control group was fed Artemia nauplii until 17 dpf and weaned thereafter with the 45P\&nbsp;:\&nbsp;10L compound diet. The experiment was carried out in triplicate. Results showed higher growth and survival rates and lower incidence of cannibalism in the group fed the 45P\&nbsp;:\&nbsp;15L diet than in the other treatments. Differences in larval survival and growth performance were associated with the higher protein and lipid content rather than the protein\&nbsp;:\&nbsp;lipid ratio of this diet. When comparing diets with the same protein level, the increase in dietary lipid led to an improvement in growth, suggesting that energy from lipids spares protein for growth in P.\&nbsp;punctifer fingerlings. An Artemia feeding period longer than 12 dpf did not improve larval growth or survival.</p>
},
	issn = {1439-0426},
	doi = {10.1111/jai.12978},
	url = {http://dx.doi.org/10.1111/jai.12978},
	author = {Darias, Maria and Castro-Ruiz, D and Estivals, G and Quazuguel, Patrick and Fern{\'a}ndez, C and Jesus Nu{\~n}ez-Rodriguez and Clota, F. and Gilles, S and Garc{\'\i}a-D{\'a}vila, C and Gisbert, E. and Cahu, Chantal L}
}
@proceedings {3546,
	title = {Installation of microphytobenthos biofilm on concretes of different compositions - Mise en place d{\textquoteright}un biofilm microphytobenthique sur des b{\'e}tons de diff{\'e}rentes compositions},
	volume = {1},
	year = {2015},
	month = {01/2015},
	pages = {127-135},
	edition = {M. Boutouil \& S. Leboulanger},
	address = {ESITC Caen},
	isbn = {978-2-95517664-0-5},
	author = {Leroy, Fanny and Lestarquit, Mabel and Anne-Marie Rusig and Isabelle Mussio and Roussel, D{\'e}borah and Napol{\'e}on, Camille and Pascal Claquin}
}
@article {5042,
	title = {The mosaic of habitats of the Seine estuary: Insights from food-web modelling and network analysis},
	journal = {ECOLOGICAL MODELLING},
	volume = {312},
	year = {2015},
	month = {09/2015},
	pages = {91-101},
	abstract = {<p class="rtejustify">Ecological network analysis was applied in the Seine estuary ecosystem, northern France, integrating ecological data from the years 1996 to 2002. The Ecopath with Ecosim (EwE) approach was used to model the trophic flows in 6 spatial compartments leading to 6 distinct EwE models: the navigation channel and the two channel flanks in the estuary proper, and 3 marine habitats in the eastern Seine Bay. Each model included 12 consumer groups, 2 primary producers, and one detritus group. Ecological network analysis was performed, including a set of indices, keystoneness, and trophic spectrum analysis to describe the contribution of the 6 habitats to the Seine estuary ecosystem functioning. Results showed that the two habitats with a functioning most related to a stressed state were the northern and central navigation channels, where building works and constant maritime traffic are considered major anthropogenic stressors. The strong top-down control highlighted in the other 4 habitats was not present in the central channel, showing instead (i) a change in keystone roles in the ecosystem towards sediment-based, lower trophic levels, and (ii) a higher system omnivory. The southern channel evidenced the highest system activity (total system throughput), the higher trophic specialisation (low system omnivory), and the lowest indication of stress (low cycling and relative redundancy). Marine habitats showed higher fish biomass proportions and higher transfer efficiencies per trophic levels than the estuarine habitats, with a transition area between the two that presented intermediate ecosystem structure. The modelling of separate habitats permitted disclosing each one{\textquoteright}s response to the different pressures, based on their a priori knowledge. Network indices, although non-monotonously, responded to these differences and seem a promising operational tool to define the ecological status of transitional water ecosystems. (C) 2015 Elsevier B.V. All rights reserved.</p>
},
	issn = {{0304-3800}},
	doi = {{10.1016/j.ecolmodel.2015.05.026}},
	author = {Samuele Tecchio and Rius, Armonie Tous and Dauvin, Jean-Claude and Lobry, Jeremy and G{\'e}raldine Lassalle and Morin, Jocelyne and Bacq, Nicolas and Cachera, Marie and Chaalali, Aur{\'e}lie and Villanueva, Maria Ching and Nathalie Niquil}
}
@article {4398,
	title = {Movement patterns and home range of wild and re-stocked Arapaima gigas (Schinz, 1822) monitored by radio-telemetry in Lake Imiria, Peru},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {10{\textendash}18},
	issn = {1439-0426},
	doi = {10.1111/jai.12972},
	url = {http://dx.doi.org/10.1111/jai.12972},
	author = {Jesus Nu{\~n}ez-Rodriguez and Fabrice Duponchelle and Cotrina-Doria, M. and Renno, Jean-Francois and Ch{\'a}vez Veintemilla, C and Rebaza, C. and Deza, S. and Garc{\'\i}a-D{\'a}vila, C and Chu-Koo, F and Salvador Tello and Baras, Etienne}
}
@article {5048,
	title = {A new modeling approach to define marine ecosystems food-web status with uncertainty assessment},
	journal = {Progress in Oceanography},
	volume = {135},
	year = {2015},
	pages = {37{\textendash}47},
	author = {Chaalali, Aur{\'e}lie and Saint-B{\'e}at, B and G{\'e}raldine Lassalle and Le Loc{\textquoteright}h, Francois and Samuele Tecchio and Safi, Georges and Savenkoff, Claude and Lobry, Jeremy and Nathalie Niquil}
}
@article {4822,
	title = {Rearing of the Amazon catfish Pseudoplatystoma punctifer (Castelnau, 1855): weaning with dry and moist diets},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {83-87},
	type = {Journal Article},
	issn = {1439-0426},
	doi = {10.1111/jai.12979},
	url = {http://dx.doi.org/10.1111/jai.12979},
	author = {Fern{\'a}ndez-M{\'e}ndez, C. and Frank David and Darias, Maria and Castro-Ruiz, Diana and Jesus Nu{\~n}ez-Rodriguez}
}
@article {3385,
	title = {Relationships between biodiversity and the stability of marine ecosystems: Comparisons at a European scale using meta-analysis},
	journal = {Journal of Sea Research},
	volume = {98},
	year = {2015},
	pages = {5-14},
	abstract = {<p>Abstract The relationship between biodiversity and stability of marine benthic assemblages was investigated through meta-analyses using existing data sets (n\&nbsp;=\&nbsp;28) covering various spatial (m{\textendash}km) and temporal (1973{\textendash}2006; ranging from 5 to \&gt;\&nbsp;250\&nbsp;months) scales in different benthic habitats (emergent rock, rock pools and sedimentary habitats) over different European marine systems (North Atlantic and western Mediterranean). Stability was measured by a lower variability in time, and variability was estimated as temporal variance of species richness, total abundance (density or \% cover) and community structure (using Bray{\textendash}Curtis dissimilarities on species composition and abundance). Stability generally decreased with species richness. Temporal variability in species richness increased with the number of species at both quadrat (\&lt;\&nbsp;1\&nbsp;m2) and site (\&nbsp;\&nbsp;100\&nbsp;m2) scales, while no relationship was observed by multivariate analyses. Positive relationships were also observed at the scale of site between temporal variability in species richness and variability in community structure with evenness estimates. This implies that the relationship between species richness or evenness and species richness variability is slightly positive and depends on the scale of observation. Thus, species richness does not stabilize temporal fluctuations in species number, rather species rich assemblages are those most likely to undergo the largest fluctuations in species numbers and abundance from time to time. Changes within community assemblages in terms of structure are, however, generally independent of biodiversity. Except for sedimentary and rock pool habitats, no relationship was observed between temporal variation of total abundances and diversity at either scale. Overall, our results emphasize that the relation between species richness and species-level measures of temporal variability depends on scale of measurements, type of habitats and the marine system (North Atlantic and Mediterranean) considered.</p>
},
	keywords = {Benthic Marine Coastal Habitats, Biodiversity Ecosystem Functioning, Community Variability, Diversity{\textendash}Stability Relationships, Temporal Variability},
	issn = {1385-1101},
	doi = {http://dx.doi.org/10.1016/j.seares.2014.08.004},
	url = {http://www.sciencedirect.com/science/article/pii/S1385110114001609},
	author = {Cusson, Mathieu and Tasman P. Crowe and Rita Ara{\'u}jo and Francisco Arenas and Rebbecca Aspden and Fabio Bulleri and Dominique Davoult and Kirstie Dyson and Simonetta Fraschetti and Kristjan Herk{\"u}l and C{\'e}dric Hubas and Stuart Jenkins and Jonne Kotta and Patrik Kraufvelin and Migne, A and Markus Molis and Olwyen Mulholland and Laure M.-L.J. No{\"e}l and Paterson, David M and James Saunders and Paul J. Somerfield and Isabel Sousa-Pinto and Nicolas Spilmont and Antonio Terlizzi and Lisandro Benedetti-Cecchi}
}
@article {3764,
	title = {The role of female cephalopod researchers: past and present},
	journal = {Journal of Natural History},
	volume = {49},
	year = {2015},
	pages = {1235{\textendash}1266},
	issn = {0022-2933},
	doi = {10.1080/00222933.2015.1037088},
	url = {http://dx.doi.org/10.1080/00222933.2015.1037088},
	author = {Allcock, A. Louise and von Boletzky, Sigurd and Laure Bonnaud-Ponticelli and Brunetti, Norma E. and Cazzaniga, N{\'e}stor J. and Hochberg, Eric and Ivanovic, Marcela and Lipinski, Marek and Marian, Jos{\'e} E. A. R. and Nigmatullin, Chingis and Nixon, Marion and Jean-Paul Robin and Rodhouse, Paul G. K. and Vidal, Erica A. G.}
}
@article {3941,
	title = {Spatial changes in fatty acids signatures of the great scallop Pecten maximus across the Bay of Biscay continental shelf},
	journal = {Continental Shelf Research},
	volume = {109},
	year = {2015},
	month = {15/10/2015},
	pages = {1-9},
	abstract = {<p>The spatial variability of food resources along continental margins can strongly influence the physiology and ecology of benthic bivalves. We explored the variability of food sources of the great scallop Pecten maximus, by determining their fatty acid (FA) composition along an inshore{\textendash}offshore gradient in the Bay of Biscay (from 15 to 190\&nbsp;m depth). The FA composition of the digestive gland showed strong differences between shallow and deep-water habitats. This trend was mainly driven by their content in diatom-characteristic fatty acids, which are abundant near the coast. Scallops collected from the middle of the continental shelf were characterized by higher contents of flagellate markers than scallops from shallow habitats. This could be related to a permanent vertical stratification in the water column, which reduced vertical mixing of waters, thereby enhancing organic matter recycling through the microbial loop. In the deeper water station (190\&nbsp;m), FA compositions were close to the compositions found in scallops from shallow areas, which suggest that scallops could have access to the same resources (i.e. diatoms). Muscle FA composition was more indicative of the physiological state of scallops over this depth range, revealing contrasting reproductive strategies among the two coastal sites and metabolic or physiological adaptation at greater depth (e.g. structural and functional adjustments of membrane composition). This study therefore revealed contrasted patterns between shallow and deeper habitats for both P. maximus muscle and digestive gland tissues. This emphasizes the variability in the diet of this species along its distribution range, and stresses the importance of analyzing different tissues for their FA composition in order to better understand their physiology and ecology.</p>
},
	keywords = {Depth gradient, fatty acids, Metabolism, Pecten maximus, Trophic markers},
	author = {Nerot, C and Tarik Meziane and Gauthier Schaal and Grall, J and Lorrain, A and Paullet, Y-M and Kraffe, E}
}
@article {9379,
	title = {Spiralian Phylogeny Informs the Evolution of Microscopic Lineages},
	journal = {Current Biology},
	volume = {25},
	year = {2015},
	month = {Jan-08-2015},
	pages = {2000 - 2006},
	issn = {09609822},
	doi = {10.1016/j.cub.2015.06.068},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0960982215007952},
	author = {Laumer, Christopher~E. and Bekkouche, Nicolas and Kerbl, Alexandra and Goetz, Freya and Neves, Ricardo~C. and S{\o}rensen, Martin~V. and Kristensen, Reinhardt~M. and Hejnol, Andreas and Dunn, Casey~W. and Giribet, Gonzalo and Worsaae, Katrine}
}
@article {5049,
	title = {Trophic networks: How do theories link ecosystem structure and functioning to stability properties? A review},
	journal = {Ecological indicators},
	volume = {52},
	year = {2015},
	pages = {458{\textendash}471},
	author = {Saint-B{\'e}at, B and Dan Baird and H Asmus and R Asmus and Bacher, C and Pacella, S R and Johnson, Galen A and David, Val{\'e}rie and V{\'e}zina, A F and Nathalie Niquil}
}
@article {4399,
	title = {Using barcoding of larvae for investigating the breeding seasons of pimelodid catfishes from the Mara{\~n}on, Napo and Ucayali rivers in the Peruvian Amazon},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {40{\textendash}51},
	issn = {1439-0426},
	doi = {10.1111/jai.12987},
	url = {http://dx.doi.org/10.1111/jai.12987},
	author = {Garc{\'\i}a-D{\'a}vila, C. and Castro-Ruiz, Diana and Renno, Jean-Francois and Chota-Macuyama, Werner and Carvajal-Vallejos, Fernando and Sanchez, H. and Angulo, C. and Nolorbe, C. and Alvarado, J. and Estivals, G and Jesus Nu{\~n}ez-Rodriguez and Fabrice Duponchelle}
}
@article {5040,
	title = {Using ecological models to assess ecosystem status in support of the European Marine Strategy Framework Directive},
	journal = {ECOLOGICAL INDICATORS},
	volume = {58},
	year = {2015},
	month = {NOV},
	pages = {175-191},
	abstract = {<p class="rtejustify">The European Union{\textquoteright}s Marine Strategy Framework Directive (MSFD) seeks to achieve, for all European seas, "Good Environmental Status" (GEnS), by 2020. Ecological models are currently one of the strongest approaches used to predicting and understanding the consequences of anthropogenic and climate-driven changes in the natural environment. We assess the most commonly used capabilities of the modelling community to provide information about indicators outlined in the MSFD, particularly on biodiversity, food webs, non-indigenous species and seafloor integrity descriptors. We built a catalogue of models and their derived indicators to assess which models were able to demonstrate: (1) the linkages between indicators and ecosystem structure and function and (2) the impact of pressures on ecosystem state through indicators. Our survey identified 44 ecological models being implemented in Europe, with a high prevalence of those that focus on links between hydrodynamics and biogeochemistry, followed by end-to-end, species distribution/habitat suitability, bio-optical (remote sensing) and multispecies models. Approximately 200 indicators could be derived from these models, the majority of which were biomass and physical/hydrological/chemical indicators. Biodiversity and food webs descriptors, with similar to 49\% and similar to 43\% respectively, were better addressed in the reviewed modelling approaches than the non-indigenous species (0.3\%) and sea floor integrity (similar to 8\%) descriptors. Out of 12 criteria and 21 MSFD indicators relevant to the abovementioned descriptors, currently only three indicators were not addressed by the 44 models reviewed. Modelling approaches showed also the potential to inform on the complex, integrative ecosystem dimensions while addressing ecosystem fundamental properties, such as interactions between structural components and ecosystems services provided, despite the fact that they are not part of the MSFD indicators set. The cataloguing of models and their derived indicators presented in this study, aim at helping the planning and integration of policies like the MSFD which require the assessment of all European Seas in relation to their ecosystem status and pressures associated and the establishment of environmental targets (through the use of indicators) to achieve GEnS by 2020. (C) 2015 The Authors. Published by Elsevier Ltd.</p>
},
	issn = {{1470-160X}},
	doi = {{10.1016/j.ecolind.2015.05.037}},
	author = {Piroddi, Chiara and Teixeira, Heliana and Lynam, Christopher P. and Smith, Chris and Alvarez, Maria C. and Mazik, Krysia and Andonegi, Eider and Churilova, Tanya and Tedesco, Letizia and Chifflet, Marina and Chust, Guillem and Galparsoro, Ibon and Garcia, Ana Carla and Kamari, Maria and Kryvenko, Olga and G{\'e}raldine Lassalle and Neville, Suzanna and Nathalie Niquil and Papadopoulou, Nadia and Rossberg, Axel G. and Suslin, Vjacheslav and Uyarra, Maria C.}
}
@article {4392,
	title = {Variations in reproductive strategy of the silver Arowana, Osteoglossum bicirrhosum Cuvier, 1829 from four sub-basins of the Peruvian Amazon},
	journal = {Journal of Applied Ichthyology },
	volume = {31},
	year = {2015},
	pages = {19-30},
	author = {Fabrice Duponchelle and Ruiz-Arce Adela and Waty, A. and Garc{\'\i}a-Vasquez, Aurea and Renno, J-F and Chu-Koo, F and Garc{\'\i}a-D{\'a}vila, C. and Vargas, Gladys and Salvador Tello and Ortiz, A. and Pinedo, R. and Manzanares V{\'a}squez, R. and Jesus Nu{\~n}ez-Rodriguez}
}
@article {Lassale_etal2013,
	title = {{Combining quantitative and qualitative models to identify functional groups for monitoring changes in the Bay of Biscay continental shelf exploited foodweb}},
	journal = {ICES Journal of Marine Science},
	volume = {71},
	number = {1},
	year = {2014},
	pages = {105{\textendash}117},
	abstract = {<p class="rtejustify">To develop and implement ecosystem-based management, it is critical to monitor foodweb components or functional groups which are robust to uncertainty in ecosystem structure and functioning yet sensitive to changes. To select such functional groups for the Bay of Biscay continental shelf, both quantitative and qualitative foodweb models were developed. First, functional groups for which predictions of directions of change following an increase in primary productivity, prey or predators, or in fishing activities were identical across alternative qualitative model structures were identified. Second, the robustness to model type was assessed by comparing qualitative predictions with quantitative Ecopath model results. The demersal fish community was identified as a sensitive and robust indicator for monitoring foodweb ecological status in the Bay of Biscay. The present study also suggested the potential antagonistic effects of alternative management measures on small pelagic fish and highlighted the need for the joint management of all pressures.</p>
},
	keywords = {comparative studies, ecosystem management, foodweb, loop analysis, Northeast Atlantic continental shelf},
	doi = {10.1093/icesjms/fst107},
	author = {G{\'e}raldine Lassalle and Nelva Pasqual, J-S and Bo{\"e}t, P and Rochet, M J and Trenkel, V M and Nathalie Niquil}
}
@article {3390,
	title = {Could FaRP-Like Peptides Participate in Regulation of Hyperosmotic Stress Responses in Plants?},
	journal = {Front Endocrinol (Lausanne)},
	volume = {5},
	year = {2014},
	month = {2014},
	pages = {132},
	abstract = {<p>The ability to respond to hyperosmotic stress is one of the numerous conserved cellular processes that most of the organisms have to face during their life. In metazoans, some peptides belonging to the FMRFamide-like peptide (FLP) family were shown to participate in osmoregulation via regulation of ion channels; this is, a well-known response to hyperosmotic stress in plants. Thus, we explored whether FLPs exist and regulate osmotic stress in plants. First, we demonstrated the response of Arabidopsis thaliana cultured cells to a metazoan FLP (FLRF). We found that A. thaliana express genes that display typical FLP repeated sequences, which end in RF and are surrounded by K or R, which is typical of cleavage sites and suggests bioactivity; however, the terminal G, allowing an amidation process in metazoan, seems to be replaced by W. Using synthetic peptides, we showed that amidation appears unnecessary to bioactivity in A. thaliana, and we provide evidence that these putative FLPs could be involved in physiological processes related to hyperosmotic stress responses in plants, urging further studies on this topic.</p>
},
	issn = {1664-2392},
	doi = {10.3389/fendo.2014.00132},
	author = {Bouteau, Francois and Yann Bassaglia and Monetti, Emanuela and Tran, Daniel and Navet, S and Mancuso, Stefano and El-Maarouf-Bouteau, Hayat and Laure Bonnaud-Ponticelli}
}
@article {4824,
	title = {Determinaci{\'o}n del sexo en arahuana Osteoglossum bicirrhosum mediante la detecci{\'o}n de los niveles plasm{\'a}ticos de vitelogenina},
	journal = {Ciencia Amaz{\'o}nica},
	volume = {4},
	year = {2014},
	pages = {151-159},
	type = {Journal Article},
	keywords = {Arahuana, Sexaje, Vitellogenine},
	doi = {10.22386/ca.v4i2.81},
	author = {Ram{\'\i}rez-Arrarte, Pedro and Jesus Nu{\~n}ez-Rodriguez and Chu-Koo, Fred}
}
@article {4126,
	title = {Diversity of cultivable fungi associated with Antarctic marine sponges and screening for their antimicrobial, antitumoral and antioxidant potential.},
	journal = {World J Microbiol Biotechnol},
	volume = {30},
	year = {2014},
	month = {2014 Jan},
	pages = {65-76},
	abstract = {<p>The diversity of sponge-associated fungi has been poorly investigated in remote geographical areas like Antarctica. In this study, 101 phenotypically different fungal isolates were obtained from 11 sponge samples collected in King George Island, Antarctica. The analysis of ITS sequences revealed that they belong to the phylum Ascomycota. Sixty-five isolates belong to the genera Geomyces, Penicillium, Epicoccum, Pseudeurotium, Thelebolus, Cladosporium, Aspergillus, Aureobasidium, Phoma, and Trichocladium but 36 isolates could not be identified at genus level. In order to estimate the potential of these isolates as producers of interesting bioactivities, antimicrobial, antitumoral and antioxidant activities of fungal culture extracts were assayed. Around 51\% of the extracts, mainly from the genus Geomyces and non identified relatives, showed antimicrobial activity against some of the bacteria tested. On the other hand, around 42\% of the extracts showed potent antitumoral activity, Geomyces sp. having the best performance. Finally, the potential of the isolated fungi as producers of antioxidant activity seems to be moderate. Our results suggest that fungi associated with Antarctic sponges, particularly Geomyces, would be valuable sources of antimicrobial and antitumoral compounds. To our knowledge, this is the first report describing the biodiversity and the metabolic potential of fungi associated with Antarctic marine sponges.</p>
},
	keywords = {Animals, Antarctic Regions, Anti-Bacterial Agents, Antineoplastic Agents, Antioxidants, Ascomycota, DNA, Ribosomal Spacer, Porifera, Sequence Analysis, DNA},
	issn = {1573-0972},
	doi = {10.1007/s11274-013-1418-x},
	author = {Henr{\'\i}quez, Marlene and Vergara, Karen and Norambuena, Javiera and Beiza, Andrea and Maza, Felipe and Ubilla, Pamela and Araya, Ivanna and Ch{\'a}vez, Renato and San-Mart{\'\i}n, Aurelio and Darias, Jos{\'e} and Darias, Maria and Vaca, Inmaculada}
}
@article {3412,
	title = {Diversity structure of phytoplankton communities and primary productivity in a temperate epicontinental sea },
	journal = {Marine Ecology Progress Series},
	volume = {505},
	year = {2014},
	pages = {49-64},
	abstract = {The dynamics of the phytoplankton assemblage, the physical, chemical and biological
parameters, and primary productivity and production were monitored in the central English
Channel along a transect between Ouistreham and Portsmouth from January to December 2010.
The spatial patterns of the phytoplankton assemblage were controlled by the hydrological characteristics
of the water masses, and the annual structure of the phytoplankton assemblage was characteristic
of the central English Channel and was controlled by seasonality. The spring bloom was
dominated by a single species, Chaetoceros socialis, and associated with low microphytoplankton
evenness and Shannon-Wiener indices, whereas the evenness index was high from late spring to
winter and associated with the proliferation of pico- and nanophytoplankton cells. We identified 2
species responsible for harmful algal blooms, Phaeocystis globosa, which dominated the community
in the northern part of the Seine Bay in May, and Lepidodinium chlorophorum, which dominated
the community near the French coast in September. We examined the relationship between
microphytoplankton diversity and maximum primary production and productivity. We found a
negative parabolic relationship between the diversity indices (evenness and Shannon-Wiener)
and maximum primary production, and a positive parabolic relationship between the number of
taxa (richness) and maximum primary production. However, we found no relationship between
maximum productivity and the evenness or richness indices. High levels of productivity were
measured during the increasing abundance of pico and nanophytoplankton cells, highlighting the
importance of taking the dominant functional group into account, rather than the degree of diversity,
when explaining the level of productivity.},
	keywords = {English Channel, Phytoplankton diversity, primary production, Productivity},
	author = {Napol{\'e}on, C and Fiant, Liliane and Raimbault, V and Riou, P and Pascal Claquin}
}
@article {3414,
	title = {Effects of CO2, nutrients and light on coastal plankton: II. Metabolic rates. Aquatic Biology},
	journal = {Aquatic Biology},
	volume = {22},
	year = {2014},
	month = {11/20/14},
	pages = {43-57},
	abstract = {We conducted a microcosm experiment aimed at studying the interactive effects
of high CO2, nutrient loading and irradiance on the metabolism of a planktonic community
sampled in the Western Mediterranean near the coast of M{\'a}laga. Changes in the metabolism
of phytoplankton and bacterioplankton were observed for 7 d under 8 treatment conditions,
representing the full factorial combinations of 2 levels each of CO2, nutrient concentration
and solar radiation exposure. The initial plankton sample was collected at the surface from
a stratified water column, indicating that phytoplankton were naturally acclimated to high
irradiance and low nutrient concentrations. Nutrient addition combined with high irradiance
resulted in a significant increase in primary production. Nitrate uptake by phytoplankton was
also stimulated under high nutrient conditions. High nutrients, high irradiance and the combination
of low CO2 and high irradiance positively affected bacterial production. Light was the
main factor affecting the respiration rates of the community, which were higher at the high
light level. After 7 d of incubation, nutrient loading was the only factor that significantly
affected the amount of particulate organic carbon (POC) accumulated in the microcosms.
Therefore, the changes in metabolic rates produced at high CO2 had no effect on net production
of particulate organic matter. If these results are extrapolated to the natural environment,
it could be hypothesized that high levels of CO2 will have a limited impact on biological
pump activity in the northern Alboran Sea since it is assumed that POC export towards deeper
layers determines the potential for carbon sequestration.},
	author = {Mercado, J. M. and Sobrino, C and Neale, P.J. and Segovia, M. and Reul, A. and Amorim, A.L. and Carrillo, P and Pascal Claquin and Cabrerizo, M.J and Le{\'o}n, P. and Lorenzo, M.R and Medina, J. M. and Montecino, V. and Napol{\'e}on, C and Prasil, 0. and Putzeys, S and Salles, S and Yebra, L}
}
@article {3445,
	title = {Genetic structure in the Amazonian catfish Brachyplatystoma rousseauxii: influence of life history strategies.},
	journal = {Genetica},
	volume = {142},
	year = {2014},
	month = {2014 Aug},
	pages = {323-36},
	abstract = {<p>The Dorado or Plateado (Gilded catfish) Brachyplatystoma rousseauxii (Pimelodidae, Siluriformes) is a commercially valuable migratory catfish performing the largest migration in freshwaters: from the Amazonian headwaters in the Andean foothills (breeding area) to the Amazon estuary (nursery area). In spite of its importance to inform management and conservation efforts, the genetic variability of this species has only recently begun to be studied. The aim of the present work was to determine the population genetic structure of B. rousseauxii in two regions: the Upper Madera Basin (five locations in the Bolivian Amazon) and the Western Amazon Basin (one regional sample from the Uyucal{\'\i}-Napo-Mara{\~n}on-Amazon basin, Peru). Length polymorphism at nine microsatellite loci (284 individuals) was used to determine genetic variability and to identify the most probable panmictic units (using a Bayesian approach), after a significant departure from Hardy-Weinberg equilibrium was observed in the overall dataset (Western Amazon\&nbsp;+\&nbsp;Upper Madera). Bayesian analyses revealed at least three clusters in admixture in the five locations sampled in the Bolivian Amazon, whereas only two of these clusters were observed in the Western Amazon. Considering the migratory behaviour of B. rousseauxii, different life history strategies, including homing, are proposed to explain the cluster distribution. Our results are discussed in the light of the numerous threats to the species survival in the Madera basin, in particular dam and reservoir construction.</p>
},
	issn = {1573-6857},
	doi = {10.1007/s10709-014-9777-2},
	author = {Carvajal-Vallejos, F M and Fabrice Duponchelle and Desmarais, E and Cerqueira, F and Sophie Qu{\'e}rouil and Jesus Nu{\~n}ez-Rodriguez and Garc{\'\i}a, C and Renno, J-F}
}
@article {3250,
	title = {Histological development of the digestive system of the Amazonian pimelodid catfish Pseudoplatystoma punctifer.},
	journal = {Animal},
	volume = {8},
	year = {2014},
	month = {2014 Nov},
	pages = {1765-76},
	abstract = {<p>The organogenesis of the digestive system was described in the Amazonian pimelodid catfish species Pseudoplatystoma punctifer from hatching (3.5 mm total length, TL) to 41 days post-fertilization (dpf) (58.1 mm TL) reared at 28{\textdegree}C. Newly hatched larvae showed a simple digestive tract, which appeared as a straight undifferentiated and unfolded tube lined by a single layer of columnar epithelial cells (future enterocytes). During the endogenous feeding period, comprised between 20 and 96 h post-fertilization (3.5 to 6.1 mm TL), the larval digestive system experienced a fast transformation with the almost complete development and differentiation of most of digestive organs (buccopahrynx, oesophagus, intestine, liver and exocrine pancreas). Yolk reserves were not completely depleted at the onset of exogenous feeding (4 dpf, 6.1 mm TL), and a period of mixed nutrition was observed up to 6 to 7 dpf (6.8 to 7.3 mm TL) when yolk was definitively exhausted. The stomach was the organ that latest achieved its complete differentiation, characterized by the development of abundant gastric glands in the fundic stomach between 10 and 15 dpf (10.9 to 15.8 mm TL) and the formation of the pyloric sphincter at the junction of the pyloric stomach and the anterior intestine at 15 dpf (15.8 mm TL). The above-mentioned morphological and histological features observed suggested the achievement of a digestive system characteristic of P. punctifer juveniles and adults. The ontogeny of the digestive system in P. punctifer followed the same general pattern as in most Siluriform species so far, although some species-specific differences in the timing of differentiation of several digestive structures were noted, which might be related to different reproductive guilds, egg and larval size or even different larval rearing practices. According to present findings on the histological development of the digestive system in P. punctifer, some recommendations regarding the rearing practices of this species are also provided in order to improve the actual larval rearing techniques of this fast-growing Neotropical catfish species.</p>
},
	issn = {1751-732X},
	doi = {10.1017/S1751731114001797},
	author = {Gisbert, E and Moreira, C and Castro-Ruiz, D and Ozt{\"u}rk, S and Fern{\'a}ndez, C and Gilles, S and Jesus Nu{\~n}ez-Rodriguez and Fabrice Duponchelle and Salvador Tello and Renno, J F and Garc{\'\i}a-D{\'a}vila, C and Darias, Maria}
}
@article {4108,
	title = {An integrated closed system for fish-plankton aquaculture in Amazonian fresh water.},
	journal = {Animal},
	volume = {8},
	year = {2014},
	month = {2014 Aug},
	pages = {1319-28},
	abstract = {<p>A prototype of an integrated closed system for fish-plankton aquaculture was developed in Iquitos (Peruvian Amazonia) in order to cultivate the Tiger Catfish, Pseudoplatystoma punctifer (Castelnau, 1855). This freshwater recirculating system consisted of two linked sewage tanks with an intensive rearing unit (a cage) for P. punctifer placed in the first, and with a fish-plankton trophic chain replacing the filters commonly used in clear water closed systems. Detritivorous and zooplanktivorous fishes (Loricariidae and Cichlidae), maintained without external feeding in the sewage volume, mineralized organic matter and permitted the stabilization of the phytoplankton biomass. Water exchange and organic waste discharge were not necessary. In this paper we describe the processes undertaken to equilibrate this ecosystem: first the elimination of an un-adapted spiny alga, Golenkinia sp., whose proliferation was favored by the presence of a small rotifer, Trichocerca sp., and second the control of this rotifer proliferation via the introduction of two cichlid species, Acaronia nassa Heckel, 1840 and Satanoperca jurupari Heckel, 1840, in the sewage part. This favored some development of the green algae Nannochloris sp. and Chlorella sp. At that time we took the opportunity to begin a 3-month rearing test of P. punctifer. The mean specific growth rate and feed conversion ratio (FCR) of P. punctifer were 1.43 and 1.27, respectively, and the global FCR, including fish in the sewage part, was 1.08. This system has proven to be suitable for growing P. punctifer juveniles out to adult, and provides several practical advantages compared with traditional recirculating clear water systems, which use a combination of mechanical and biological filters and require periodic waste removal, leading to water and organic matter losses.</p>
},
	issn = {1751-732X},
	doi = {10.1017/S1751731114001165},
	author = {Gilles, S and Ismi{\~n}o, R and S{\'a}nchez, H and Frank David and Jesus Nu{\~n}ez-Rodriguez and Dugu{\'e}, R and Darias, Maria and R{\"o}mer, U}
}
@article {3487,
	title = {Multiscale patterns in the diversity and organization of benthic intertidal fauna among French Atlantic estuaries},
	journal = {Journal of Sea Research},
	volume = {90},
	year = {2014},
	month = {07/2014},
	pages = {95 - 110},
	abstract = {<p>Based on a parallel sampling conducted during autumn 2008, a comparative study of the intertidal benthic macrofauna among 10 estuarine systems located along the Channel and Atlantic coasts of France was performed in order to assess the level of fauna similarity among these sites and to identify possible environmental factors involved in the observed pattern at both large (among sites) and smaller (benthic assemblages) scales. More precisely this study focused on unraveling the observed pattern of intertidal benthic fauna composition and diversity observed at among-site scale by exploring both biotic and abiotic factors acting at the among- and within-site scales. Results showed a limited level of similarity at the among-site level in terms of intertidal benthic fauna composition and diversity. The observed pattern did not fit with existing transitional water classification methods based on fish or benthic assemblages developed in the frame of the European Water Framework Directive (WFD). More particularly, the coastal plain estuaries displayed higher among-site similarity compared to ria systems. These coastal plain estuaries were characterized by higher influence of river discharge, lower communication with the ocean and high suspended particulate matter levels. On the other hand, the ria-type systems were more dissimilar and different from the coastal plain estuaries. The level of similarity among estuaries was mainly linked to the relative extent of the intertidal {\textquotedblleft}Scrobicularia plana{\textendash}Cerastoderma edule{\textquotedblright} and {\textquotedblleft}Tellina tenuis{\textquotedblright} or {\textquotedblleft}Venus{\textquotedblright} communities as a possible consequence of salinity regime, suspended matter concentrations and fine particles supply with consequences on the trophic functioning, structure and organization of benthic fauna. Despite biogeographical patterns, the results also suggest that, in the context of the WFD, these estuaries should only be compared on the basis of the most common intertidal habitat occurring throughout all estuarine systems and that the \{EUNIS\} biotope classification might be used for this purpose. In addition, an original inverse relation between γ-diversity and area was shown; however, its relevance might be questioned.</p>
},
	keywords = {Diversity, Estuaries, Macrozoobenthos, Structuring Factors, WFD},
	issn = {1385-1101},
	doi = {http://dx.doi.org/10.1016/j.seares.2014.02.014},
	url = {http://www.sciencedirect.com/science/article/pii/S1385110114000495},
	author = {Hugues Blanchet and Beno{\^\i}t Gouillieux and Sandrine Alizier and Jean-Michel Amouroux and Guy Bachelet and Anne-Laure Barill{\'e} and Jean-Claude Dauvin and Xavier de Montaudouin and Val{\'e}rie Derolez and Nicolas Desroy and Jacques Grall and Antoine Gr{\'e}mare and Pascal Hacquebart and J{\'e}r{\^o}me Jourde and C{\'e}line Labrune and Nicolas Lavesque and Antoine Meirland and Thiebaut Nebout and Fr{\'e}d{\'e}ric Olivier and Corine Pelaprat and Thierry Ruellet and Pierre-Guy Sauriau and S{\'e}bastien Thorin}
}
@article {3392,
	title = {NEUROGENESIS IN CEPHALOPODS: {\textquotedblleft}ECO-EVO-DEVO{\textquotedblright} APPROACH IN THE CUTTLEFISH SEPIA OFFICINALIS (MOLLUSCA-CEPHALOPODA)},
	journal = {Journal of Marine Science and Technology, Taiwan},
	volume = {22},
	year = {2014},
	pages = {15-24},
	abstract = {<p>Cephalopods are new evolutionary and ecological models.<br />
By their phylogenetic position (Lophotrochozoa, Mollusca),<br />
they provide a missing master piece in the whole puzzle of<br />
neurodevelopment studies. Their derived and specific nervous<br />
system but also their convergence with vertebrates offer<br />
abundant materials to question the evolution and development<br />
of the nervous system of Metazoa (evo-devo studies). In<br />
addition, their various adaptions to different modes of life<br />
open new fields of investigation of developmental plasticity<br />
according to ecological context (eco-evo-devo approach). In<br />
this paper, we review the recent works on cephalopod nervous<br />
developmental investigations. We show how cephalopods, and<br />
especially Sepia officinalis, an animal of economical interest,<br />
can be used as suitable models to extend our knowledge on<br />
cephalopod ecology and on nervous system evolution among<br />
molluscs.</p>
},
	author = {Navet, S and S{\'e}bastien Baratte and Yann Bassaglia and Aude Andouche and Buresi, Auxane and Laure Bonnaud-Ponticelli}
}
@article {5053,
	title = {Parasitic chytrids sustain zooplankton growth during inedible algal bloom},
	journal = {Frontiers in microbiology},
	volume = {5},
	year = {2014},
	author = {Rasconi, S and Grami, Boutheina and Nathalie Niquil and Jobard, Marl{\`e}ne and Sime-Ngando, T}
}
@article {SakkaHlaili_etal2013,
	title = {Planktonic food webs revisited : reanalysis of results from the linear inverse approach},
	journal = {Progress in Oceanography},
	volume = {120},
	year = {2014},
	month = {01/2014},
	pages = {216{\textendash}229},
	abstract = {<p>Identification of the trophic pathway that dominates a given planktonic assemblage is generally based on the distribution of biomasses among food-web compartments, or better, the flows of materials or energy among compartments. These flows are obtained by field observations and a posteriori analyses, including the linear inverse approach. In the present study, we re-analysed carbon flows obtained by inverse analysis at 32 stations in the global ocean and one large lake. Our results do not support two {\textquotedblleft}classical{\textquotedblright} views of plankton ecology, i.e. that the herbivorous food web is dominated by mesozooplankton grazing on large phytoplankton, and the microbial food web is based on microzooplankton significantly consuming bacteria; our results suggest instead that phytoplankton are generally grazed by microzooplankton, of which they are the main food source. Furthermore, we identified the {\textquotedblleft}phyto-microbial food web{\textquotedblright}, where microzooplankton largely feed on phytoplankton, in addition to the already known {\textquotedblleft}poly-microbial food web{\textquotedblright}, where microzooplankton consume more or less equally various types of food. These unexpected results led to a (re)definition of the conceptual models corresponding to the four trophic pathways we found to exist in plankton, i.e. the herbivorous, multivorous, and two types of microbial food web. We illustrated the conceptual trophic pathways using carbon flows that were actually observed at representative stations. The latter can be calibrated to correspond to any field situation. Our study also provides researchers and managers with operational criteria for identifying the dominant trophic pathway in a planktonic assemblage, these criteria being based on the values of two carbon ratios that could be calculated from flow values that are relatively easy to estimate in the field.</p>
},
	doi = {10.1016/j.pocean.2013.09.003},
	author = {Sakka-Hlaili, A and Nathalie Niquil and Legendre, L}
}
@article {5050,
	title = {Reaction of an estuarine food web to disturbance: Lindeman{\textquoteright}s perspective},
	journal = {Marine Ecology Progress Series},
	volume = {512},
	year = {2014},
	pages = {141{\textendash}154},
	author = {Nathalie Niquil and Baeta, Alexandra and Marques, Jo{\~a}o Carlos and Chaalali, Aur{\'e}lie and Lobry, Jeremy and Patr{\'\i}cio, Joana}
}
@article {3420,
	title = {Sequential resuspension of biofilm components (viruses, prokaryotes and protists) as measured by erodimetry experiments in the Brouage mudflat (French Atlantic coast)},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	month = {09/2014},
	pages = {56-65},
	author = {Christine Dupuy and Clarisse Mallet and Katell Guizien and H{\'e}l{\`e}ne Montani{\'e} and Martine Br{\'e}ret and Fran{\c c}oise Mornet and Camille Fontaine and Caroline N{\'e}rot and Francis Orvain}
}
@article {4512,
	title = {Temperature modulates the progression of vitellogenesis in the European eel},
	journal = {Aquaculture},
	volume = {434},
	year = {2014},
	pages = {38-47},
	author = {Mazzeo, I and Penaranda, David S and Gallego, Victor and Sylvie Baloche and Nourizadeh-Lillabadi, R and Tveiten, Helge and Sylvie Dufour and Asturiano, Juan F and Weltzien, Finn-Arne and Perez, Luz}
}
@article {5052,
	title = {A toolbox to evaluate data reliability for whole-ecosystem models: application on the Bay of Biscay continental shelf food-web model},
	journal = {Ecological modelling},
	volume = {285},
	year = {2014},
	pages = {13{\textendash}21},
	author = {G{\'e}raldine Lassalle and Bourdaud, Pierre and Saint-B{\'e}at, B and Rochette, S{\'e}bastien and Nathalie Niquil}
}
@article {7340,
	title = {Trophic resources of the bivalve, <i>Venus verrucosa</i>               , in the Chausey archipelago (Normandy, France) determined by stable isotopes and fatty acids},
	journal = {Aquatic Living Resources},
	volume = {26},
	year = {2013},
	month = {Jan-01-2013},
	pages = {229 - 239},
	issn = {0990-7440},
	doi = {10.1051/alr/2013058},
	url = {http://www.alr-journal.org/10.1051/alr/2013058},
	author = {Perez, V{\'e}ronique and Fr{\'e}d{\'e}ric Olivier and Tremblay, Rejean and Neumeier, Urs and Thebault, Julien and Chauvaud, Laurent and Tarik Meziane}
}
@article {8595,
	title = {Satellite tracking of a Booted Eagle Aquila pennata during migration},
	journal = {Ringing \& Migration},
	volume = {25},
	year = {2010},
	month = {Jan-01-2010},
	pages = {62 - 64},
	issn = {0307-8698},
	doi = {10.1080/03078698.2010.9674418},
	url = {http://www.tandfonline.com/doi/abs/10.1080/03078698.2010.9674418},
	author = {Chevallier, Damien and Jiguet, Fr{\'e}d{\'e}ric and Nore, Th{\'e}r{\`e}se and Baillon, Fran{\c c}ois and Cavallin, Pascal}
}
@article {6889,
	title = {Identification and expression of a factor of the DM family in the oyster Crassostrea gigas},
	journal = {Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology},
	volume = {152},
	year = {2009},
	pages = {189-196},
	keywords = {Crassostrea gigas, Dmrt1, Dmrt4, Dmrt5, Oyster, Sex determination},
	doi = {10.1016/j.cbpa.2008.09.019},
	url = {https://hal-normandie-univ.archives-ouvertes.fr/hal-02296545},
	author = {Naimi, Amine and Anne-Sophie Martinez and Specq, Marie-Laure and Mrac, Abdellah and Diss, Blandine and Mathieu, Michel and Sourdaine, Pascal}
}
@article {6891,
	title = {Molecular cloning and gene expression of Cg-Foxl2 during the development and the adult gametogenetic cycle in the oyster Crassostrea gigas},
	journal = {Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology},
	volume = {154},
	year = {2009},
	pages = {134-142},
	keywords = {Adult gametogenetic cycle, Cg-DMl, Crassostrea gigas, Development, Foxl2, Gonad, Oyster, Sex determination},
	doi = {10.1016/j.cbpb.2009.05.011},
	url = {https://hal-normandie-univ.archives-ouvertes.fr/hal-02296548},
	author = {Naimi, Amine and Anne-Sophie Martinez and Specq, Marie-Laure and Diss, Blandine and Mathieu, Michel and Sourdaine, Pascal}
}
@article {7346,
	title = {Role of grapsid crabs, Parasesarma erythrodactyla, in entry of mangrove leaves into an estuarine food web: a mesocosm study},
	journal = {Marine Biology},
	volume = {156},
	year = {2009},
	month = {Jan-10-2009},
	pages = {2343 - 2352},
	issn = {0025-3162},
	doi = {10.1007/s00227-009-1262-6},
	url = {http://link.springer.com/10.1007/s00227-009-1262-6},
	author = {Nerot, Caroline and Tarik Meziane and Provost-Govrich, Anais and Rybarczyk, Herv{\'e} and Lee, S. Yip}
}
@article {9185,
	title = {DNA barcoding of two amphidromous goby post-larvae (penja) morphotypes from Mandar River, West Sulawesi, Indonesia.},
	volume = {45},
	year = {201},
	month = {08/2021},
	pages = {243-249},
	author = {Nurjirana and Philippe Keith and Burhanuddin, A I and Afrisal, Muhammad and Haris, A}
}
