@article {9526,
	title = {Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis},
	journal = {Peer Community Journal},
	volume = {3},
	year = {2023},
	month = {Jan-01-2023},
	abstract = {Extracellular polymeric substances (EPS) refer to a wide variety of high molecular weight molecules secreted outside the cell membrane by biofilm microorganisms. In the present study, EPS from marine microphytobenthic biofilms were extracted and their isotope ratios were analysed. A comparison of these ratios with the carbon isotope ratios of fatty acid biomarkers allowed the identification of the main EPS producers of two contrasting types of intertidal marine sediments. Our study reveals that EPS sources are more diverse in sandy sediments than in muddy sediments. We also found distinct patterns in the production and breakdown of EPS in sandy and muddy environments. The main difference observed was in how epipelic and epipsammic diatoms affected the chemistry of EPS, which had significant implications for the growth of bacteria specialized in utilizing EPS. These differences were likely linked to variations in the functioning of epipelic and epipsammic communities, specifically in how EPS was used either for motility or for cell attachment.},
	doi = {10.24072/pcjournal.336},
	url = {https://peercommunityjournal.org/articles/10.24072/pcjournal.336/},
	author = {C{\'e}dric Hubas and Gaubert-Boussarie, Julie and D{\textquoteright}Hondt, An-Sofie and Bruno Jesus and Lamy, Dominique and Meleder, Vona and Prins, Antoine and Rosa, Philippe and Stock, Willem and Sabbe, Koen}
}
@article {8923,
	title = {Mangrove microbiota along the urban-to-rural gradient of the Cayenne estuary (French Guiana, South America): Drivers and potential bioindicators},
	journal = {Science of The Total Environment},
	volume = {807},
	year = {2022},
	month = {Jan-02-2022},
	pages = {150667},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2021.150667},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969721057454},
	author = {Fiard, Maud and Cuny, Philippe and Sylvi, L{\'e}a and C{\'e}dric Hubas and J{\'e}z{\'e}quel, Ronan and Lamy, Dominique and Walcker, Romain and El Houssainy, Amonda and Heimb{\"u}rger-Boavida, Lars-Eric and Robinet, Tony and Bihannic, Isabelle and Gilbert, Franck and Michaud, Emma and Guillaume Dirberg and Militon, C{\'e}cile}
}
@article {7965,
	title = {First Assessment of the Benthic Meiofauna Sensitivity to Low Human-Impacted Mangroves in French Guiana},
	journal = {Forests},
	volume = {12},
	year = {2021},
	month = {Jan-03-2021},
	pages = {338},
	doi = {10.3390/f12030338},
	url = {https://www.mdpi.com/1999-4907/12/3/338},
	author = {Michelet, Claire and Zeppilli, Daniela and C{\'e}dric Hubas and Baldrighi, Elisa and Cuny, Philippe and Guillaume Dirberg and Militon, C{\'e}cile and Walcker, Romain and Lamy, Dominique and J{\'e}z{\'e}quel, Ronan and Receveur, Justine and Gilbert, Franck and Houssainy, Amonda El and Dufour, Aur{\'e}lie and Heimb{\"u}rger-Boavida, Lars-Eric and Bihannic, Isabelle and Sylvi, L{\'e}a and Vivier, Baptiste and Michaud, Emma}
}
@article {7778,
	title = {Prokaryotic abundance, cell size and extracellular enzymatic activity in a human impacted and mangrove dominated tropical estuary (Can Gio, vietnam)},
	journal = {Estuarine, Coastal and Shelf Science},
	year = {2021},
	month = {Jan-02-2021},
	pages = {107253},
	abstract = {Extracellular enzymatic activities constitute the first and limiting step of the whole process of organic matter (OM) cycling in aquatic ecosystems. This study aims to identify the factors controlling prokaryotes ability to hydrolyse OM in an Indo-Pacific tropical mangrove ecosystem (Can Gio, Vietnam). Prokaryotic abundance and leucine-aminopeptidase exo-proteolytic activity (EPA) were measured at vertical (from the sea-surface microlayer to bottom waters), spatial (along a transect within the estuary) and seasonal (wet and dry season) scales. Prokaryotic abundance ranged from 1.2 to 5.7\&nbsp;{\texttimes}\&nbsp;109\&nbsp;cells L-1\&nbsp;and EPA ranged from 24 to 505\&nbsp;nmol\&nbsp;L-1\&nbsp;h-1\&nbsp;that was relatively similar to other highly productive ecosystems. The estuary was poorly stratified, most probably because of high water turbulence. Yet, exo-proteolytic activity was significantly higher in bottom waters, where higher loads of suspended particulate matter were measured. Seasonal and spatial differences in EPA suggest that the nature of OM transported by the Can Gio mangrove estuary affect EPA. The latter seems to be increased by two {\textquotedblleft}uncommon{\textquotedblright} situations: the input of fresh and labile OM (e.g.\&nbsp;shrimp farm effluents) or the lack of labile OM and the need to hydrolyse refractory compounds (e.g.\&nbsp;during the dry season).},
	issn = {02727714},
	doi = {10.1016/j.ecss.2021.107253},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771421000895},
	author = {Frank David and Tarik Meziane and Marchand, Cyril and Rolland, Guillaume and Pham, Aur{\'e}lie and Thanh-Nho, Nguyen and Lamy, Dominique}
}
@article {5865,
	title = {Microbial diversity involved in iron and cryptic sulfur cycling in the ferruginous, low-sulfate waters of Lake Pavin},
	journal = {PLOS ONE},
	volume = {14},
	year = {2019},
	month = {feb},
	pages = {e0212787},
	doi = {10.1371/journal.pone.0212787},
	url = {https://doi.org/10.1371/journal.pone.0212787},
	author = {Berg, Jasmine S. and J{\'e}z{\'e}quel, Didier and Duverger, Arnaud and Lamy, Dominique and Laberty-Robert, Christel and Miot, Jennyfer}
}
@article {5531,
	title = {Biofilm monitoring as a tool to assess the efficiency of artificial reefs as substrates: Toward 3D printed reefs},
	journal = {Ecological Engineering},
	volume = {120},
	year = {2018},
	pages = {230 - 237},
	abstract = {<p class="rtejustify">Habitat destruction is one of the main causes of the decline of biodiversity and of fishery resources in the marine environment. An artificial reef (AR) could be a tool for protecting or restoring these habitats and their declining biodiversity, and also help to enhance sustainable fisheries. The goal is to design non-polluting structures that best mimic the complexity of natural habitats in order to improve their service to the community. To date, the assessment of reef performance has been mostly focused on fish assemblages and species of ecological and/or socio-economic interest, and has disregarded the biofilm communities that determine the first level of an AR{\textquoteright}s trophic network. In this work, we used biofilm formation to compare the quality of substrates used as building parts for an AR, in order to optimize an eco-friendly material that will be used to design a new generation of \{ARs\} produced by giant 3D printers. The structure of the photosynthetic communities has been identified using pigment biomarkers and their production of exudates has been analysed. These polymeric substances were quantified in terms of total sugar and protein concentrations. They were further analysed in terms of amino acid content. We found no significant differences between the micro-algae communities developed on the different substrates. These photosynthetic communities were mainly composed of diatoms, prasinophytes, haptophytes, and dinoflagellates. However, we showed that the material for \{ARs\} is crucial for biofilm development, especially with regard to its secretions of sugar. The choice of an appropriate substrate for \{AR\} construction is thus of particular importance since biofilm secretions determine the organic substrate on which sessile macro-organisms will settle.</p>
},
	keywords = {Artificial reef substrates},
	issn = {0925-8574},
	doi = {https://doi.org/10.1016/j.ecoleng.2018.06.005},
	url = {https://www.sciencedirect.com/science/article/pii/S0925857418302167},
	author = {Elisabeth Riera and Lamy, Dominique and Christophe Goulard and Francour, P and C{\'e}dric Hubas}
}
@article {Lamy201629,
	title = {Dinard Herbarium: History of a Marine Station1},
	journal = {Cryptogamie, Algologie},
	volume = {37},
	number = {1},
	year = {2016},
	note = {cited By 2},
	pages = {29-45},
	doi = {10.7872/crya/v37.iss1.2016.29},
	url = {https://bioone.org/journals/Cryptogamie-Algologie/volume-37/issue-1/v37.iss1.2016.29/Dinard-Herbarium-History-of-a-Marine-Station1/10.7872/crya/v37.iss1.2016.29.short}
}
@article {3309,
	title = {Seasonal variation of marine snow-associated and ambient water prokaryotic communities in the northern Adriatic Sea},
	journal = {Aquatic Microbial Ecology},
	volume = {73},
	year = {2014},
	month = {11/2014},
	pages = {211-224},
	author = {Vojvoda, Jana and Lamy, Dominique and Sintes, Eva and Garcia, Juan AL and Turk, Valentina and Gerhard J Herndl}
}
