@article {10043, title = {Condition assessment and best-practice handling guidelines for skate (Rajiformes) bycatch: Lessons from demersal longline fisheries in the Southern Indian Ocean}, journal = {Fisheries Research}, volume = {285}, year = {2025}, month = {Jan-05-2025}, pages = {107357}, issn = {01657836}, doi = {10.1016/j.fishres.2025.107357}, url = {https://www.sciencedirect.com/science/article/pii/S0165783625000943}, author = {Faure, Johanna and Clara P{\'e}ron and Jones, Rob and Grima, Michael and Appert, Colette and Nicolas Gasco and Lamb, Timothy and Ziegler, Philippe and Cleeland, Jaimie} } @article {9939, title = {Comparative transcriptomics reveal a novel tardigrade-specific DNA-binding protein induced in response to ionizing radiation}, journal = {eLife}, volume = {13}, year = {2024}, month = {Sep-07-2024}, doi = {10.7554/eLife.92621.3}, url = {https://elifesciences.org/articles/92621}, author = {Anoud, Marwan and Delagoutte, Emmanuelle and Helleu, Quentin and Brion, Alice and Duvernois-Berthet, Evelyne and As, Marie and Marques, Xavier and Lamribet, Khadija and Senamaud-Beaufort, Catherine and Jourdren, Laurent and Adrait, Annie and Heinrich, Sophie and Toutirais, Geraldine and Sahima Hamlaoui and Gropplero, Giacomo and Giovannini, Ilaria and Ponger, Loic and Geze, Marc and Blugeon, Corinne and Cout{\'e}, Yohann and Guidetti, Roberto and Rebecchi, Lorena and Giovannangeli, Carine and De Cian, Anne and Concordet, Jean-Paul} } @article {9928, title = {Complex multivariate model predictions for coral diversity with climatic change}, journal = {Ecosphere}, volume = {15}, year = {2024}, month = {Jan-12-2024}, issn = {2150-8925}, doi = {10.1002/ecs2.v15.1210.1002/ecs2.70057}, author = {McClanahan, Tim R. and Azali, Maxwell K. and Muthiga, Nyawira A. and Porter, Sean N. and Schleyer, Michael H. and Mireille M M Guillaume} } @article {9513, title = {Comparative efects of trace metal elements released from dissolution of aluminum-based galvanic anodes, aluminum chloride, zinc chloride, and their mixture on the development of the Pacifc oyster D-larvae, Crassostrea gigas}, journal = {Environmental Science and Pollution Research }, volume = {30}, year = {2023}, pages = {101535-101545}, abstract = {As the most abundant metal in the earth{\textquoteright}s crust, aluminum (Al) is used in many sectors, and nowadays, there is an increase in anthropogenic releases to aquatic ecosystems. This is particularly true in the context of corrosion protection systems involving galvanic anodes, which are mostly made of Al. Corroded instead of the steel structures they protect, galvanic anodes are described as sacrifcial anodes. In contact with seawater, they undergo oxidation and release various metals in the form of ions or oxy-hydroxides into the marine environment, mainly Al and zinc (Zn). Several studies agree that Al increases the incidence of abnormal development in bivalve larvae from 150 μg L-1 which is close to the highest Al concentrations recorded in coastal waters. Therefore, we studied the impact of the cocktail of metals released by aluminum-based galvanic anodes on the development of Crassostrea gigas larvae, which we compared to the efects of aluminum chloride hexahydrate and zinc chloride alone and their mixture. The anode solution was realized thanks to an experimental device simulating the dissolution of a galvanic anode in the marine environment in order to reproduce the cocktail of metal species. We calculated an EC50 of 193.55 μg L-1 and 100.05 μg L-1 for Al and Zn chloride alone, respectively, and we highlighted an EC50 of 190.22 μg L-1 for the galvanic anode based on Al concentration. The mixture of the two metals in their chloride form resulted in the observation of additive and synergistic efects, which underlines the importance of considering the cocktail efect in ecotoxicological studies.}, author = {Levallois, A and Costil, K and Caplat, C and Basuyaux, O and Lebel, J.M. and Gu{\'e}gan, C and Serpentini, A.} } @article {9329, title = {Comparative effects of trace metal elements released from dissolution of aluminum-based galvanic anodes, aluminum chloride, zinc chloride, and their mixture on the development of the Pacific oyster D-larvae, Crassostrea gigas}, journal = {Environmental Science and Pollution Research}, year = {2023}, month = {Jul-08-2025}, doi = {10.1007/s11356-023-29566-7}, url = {https://link.springer.com/10.1007/s11356-023-29566-7}, author = {Levallois, Alexandre and Katherine Costil and Caplat, Christelle and Basuyaux, Olivier and Lebel, Jean-Marc and Guegan, Claire and Serpentini, Antoine} } @article {9276, title = {Comparative Proteome Analysis of Four Stages of Spermatogenesis in the Small-Spotted Catshark (Scyliorhinus canicula)}, journal = {Journal of Proteome Research}, volume = {22}, year = {2023}, month = {Jul-07-2023}, pages = {2477 - 2492}, issn = {1535-3893}, doi = {https://doi.org/10.1021/acs.jproteome.3c00206}, url = {https://pubs.acs.org/doi/10.1021/acs.jproteome.3c00206}, author = {Jeanne, Fabian and Bernay, Beno{\^\i}t and Pascal Sourdaine} } @article {9273, title = {Complex drivers of primary production along an anthropised estuary (Seine estuary{\textemdash}France)}, journal = {Frontiers in Environmental Science}, volume = {11}, year = {2023}, month = {May-06-2025}, doi = {10.3389/fenvs.2023.1216732}, url = {https://www.frontiersin.org/articles/10.3389/fenvs.2023.1216732/full}, author = {Serre-Fredj, L{\'e}on and Chasselin, L{\'e}o and Jolly, Orianne and Pascal Claquin} } @article {9760, title = {Coop{\'e}ration scientifiques-p{\^e}cheurs-gestionnaire dans le suivi {\`a} long terme de la d{\'e}pr{\'e}dation {\`a} Kerguelen et Crozet}, journal = {VertigO-la revue {\'e}lectronique en sciences de l{\textquoteright}environnement}, volume = {23}, year = {2023}, author = {Gasco, Nicolas and Tixier, Paul} } @article {9238, title = {Coral reef fish communities of natural habitats and man-made coastal structures in Bora-Bora (French Polynesia)}, journal = {Belgian Journal of Zoology}, volume = {153}, year = {2023}, month = {May-01-2023}, doi = {10.26496/bjz.2023.109}, url = {https://www.belgianjournalofzoology.eu/BJZ/article/view/109}, author = {Gairin, Emma and Minier, Lana and Claverie, Thomas and Charlotte R. Dromard and Maueau, Tehani and Collin, Antoine and Fr{\'e}d{\'e}rich, Bruno and Bertucci, Fr{\'e}d{\'e}ric and Lecchini, David} } @article {9188, title = {Current knowledge of New Caledonian marine and freshwater ichthyofauna, SW Pacific Ocean: Diversity, exploitation, threats and management actions.}, journal = {Cybium}, volume = {47}, year = {2023}, month = {03/2023}, pages = {17-30}, doi = {https://doi.org/10.26028/cybium/2023-471-002}, author = {Yves Letourneur and Charpin Nicolas and Marion Mennesson and Philippe Keith} } @article {8692, title = {Can~artificial~magnetic~fields~alter the~functional~role~of~the blue mussel, Mytilus edulis?}, journal = {Marine Biology}, volume = {169}, year = {2022}, month = {Jan-06-2022}, abstract = {Along European coasts, the rapid expansion of marine renewable energy devices and their buried power cables, raises major societal concerns regarding the potential effects of their magnetic field emissions (MFs) on marine species and ecosystem functioning. MFs occur at a local spatial scale, which makes sessile species the primary target of chronic and high-intensity exposures. Some of them, as ecosystem engineers, have critical functions in coastal habitats whose behavioral alteration may drive profound consequences at the ecosystem level. In this context, the present experimental study explored the effects of short exposure to direct current MFs, on the feeding behavior of a widespread ecosystem engineer, the blue mussel (Mytilus edulis). A repeated measure design was carried out with adult mussels successively exposed to control treatment (ambient magnetic field of 47 μT) and artificial MF treatment (direct current of 300 μT produced by Helmholtz coils), as measured around power cables. The filtration activity was assessed through valve gap monitoring using an automated image analysis system. The clearance rate was estimated simultaneously by measuring the decrease in algal concentration using flow cytometry. Our findings revealed that mussels placed in MF treatment did not exhibit observable differences in valve activity and filtration rate, thus suggesting that, at such an intensity, artificial MFs do not significantly impair their feeding behavior. However, additional research is required to investigate the sensitivity of other life stages, the effects of mid to long-term exposure to alternative and direct current fields and to test various MF intensities.}, keywords = {Coastal environments, Ecosystem engineers, Filter-feeders, Magnetic fields, Mytilus edulis, Submarine power cables}, issn = {0025-3162}, doi = {10.1007/s00227-022-04065-4}, url = {https://link.springer.com/10.1007/s00227-022-04065-4}, author = {Albert, Luana and Maire, Olivier and Fr{\'e}d{\'e}ric Olivier and Lambert, Christophe and Romero-Ramirez, Alicia and Jolivet, Aur{\'e}lie and Chauvaud, Laurent and Chauvaud, Sylvain} } @article {8409, title = {Carbon dynamics driven by seawater recirculation and groundwater discharge along a forest-dune-beach continuum of a high-energy meso-macro-tidal sandy coast}, journal = {Geochimica et Cosmochimica Acta}, volume = {317}, year = {2022}, month = {Jan-01-2022}, pages = {18 - 38}, issn = {00167037}, doi = {10.1016/j.gca.2021.10.021}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0016703721006244}, author = {Charbonnier, C{\'e}line and Anschutz, Pierre and Gwena{\"e}l Abril and Mucci, Alfonso and Deirmendjian, Loris and Poirier, Dominique and Bujan, St{\'e}phane and Lecroart, Pascal} } @article {9362, title = {Careful amendment of morphological data sets improves phylogenetic frameworks: re-evaluating placement of the fossil Amiskwia sagittiformis}, journal = {Journal of Systematic Palaeontology}, volume = {20}, year = {2022}, month = {Jul-12-2024}, pages = {1 - 14}, issn = {1477-2019}, doi = {10.1080/14772019.2022.2109217}, url = {https://www.tandfonline.com/doi/full/10.1080/14772019.2022.2109217}, author = {Bekkouche, Nicolas and G{\k a}siorowski, Ludwik} } @article {8991, title = {Cephalopod palaeobiology: evolution and life history of the most intelligent invertebratesAbstract}, journal = {Swiss Journal of Palaeontology}, volume = {141}, year = {2022}, month = {Jan-12-2022}, issn = {1664-2376}, doi = {10.1186/s13358-022-00247-1}, url = {https://sjpp.springeropen.com/articles/10.1186/s13358-022-00247-1}, author = {Klug, Christian and Laure Bonnaud-Ponticelli and Nabhitabhata, Jaruwat and Fuchs, Dirk and De Baets, Kenneth and Cheng, Ji and Hoffmann, Ren{\'e}} } @book {8753, title = {Chapter 6 - Fishes and Estuarine Environmental Health}, year = {2022}, pages = {332 - 379}, publisher = {Wiley}, organization = {Wiley}, edition = {1}, abstract = {This chapter addresses the use of fish as indicators of environmental health. The main anthropogenic pressures impacting estuarine fishes are reviewed, as well as the main types of responses by fishes at different levels of biological organisation. Fishes have been widely used to assess estuarine health through different methodological approaches, namely comparisons with historical data or reference conditions, experimental approaches, environmental impact or risk assessment methods, as well as qualitative or quantitative indicators and models. A large number of multi-metric indices based on fish have been proposed and are routinely used in environmental assessments, although to disentangle natural variability from anthropogenic pressures in a multi-stress context of global change is still a major challenge.}, isbn = {9781444336672}, doi = {10.1002/978111970534510.1002/9781119705345.ch6}, url = {https://onlinelibrary.wiley.com/doi/book/10.1002/9781119705345}, author = {Cabral, Henrique N. and Borja, Angel and Fonseca, Vanessa F. and Harrison, Trevor D. and Teichert, Nils and Lepage, Mario and Leal, Miguel C.}, editor = {Whitfield, Alan K. and Able, Kenneth W. and Blaber, Stephen J.M. and Elliott, Michael} } @article {8781, title = {Characterisation of long-term evolution (1950{\textendash}2016) and vulnerability of Mayotte{\textquoteright}s shoreline using aerial photographs and a multidisciplinary vulnerability index}, journal = {Regional Studies in Marine Science}, volume = {55}, year = {2022}, month = {Jan-09-2022}, pages = {102537}, issn = {23524855}, doi = {10.1016/j.rsma.2022.102537}, url = {https://linkinghub.elsevier.com/retrieve/pii/S2352485522001918}, author = {Courteille, Marine and Jeanson, Matthieu and Collin, Antoine and James, Doroth{\'e}e and Claverie, Thomas and Charpentier, Michel and Gairin, Emma and Ren{\'e}-Trouillefou, Malika and Giraud-Renard, El{\'e}a and Franck Dolique and Lecchini, David} } @article {8534, title = {Chlordecone-contaminated epilithic biofilms show increased adsorption capacities}, journal = {Science of The Total Environment}, volume = {825}, year = {2022}, month = {Jan-06-2022}, pages = {153942}, issn = {00489697}, doi = {10.1016/j.scitotenv.2022.153942}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969722010348}, author = {C{\'e}dric Hubas and Monti, Dominique and Jean-Michel Mortillaro and Augagneur, Sylvie and Carbon, Anne and Duran, Robert and Karama, Solange and Tarik Meziane and Pardon, Patrick and Risser, Th{\'e}o and Tapie, Nathalie and Najet Thiney and Budzinski, H{\'e}l{\`e}ne and Lauga, B{\'e}atrice} } @article {8649, title = {Classification of underwater photogrammetry data for temperate benthic rocky reef mapping}, journal = {Estuarine, Coastal and Shelf Science}, volume = {270}, year = {2022}, month = {Jan-06-2022}, pages = {107833}, issn = {02727714}, doi = {10.1016/j.ecss.2022.107833}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771422000920}, author = {Ternon, Q. and Danet, V. and Thiriet, P. and Ysnel, F. and Eric Feunteun and Collin, A.} } @article {8121, title = {Climate change influences chlorophylls and bacteriochlorophylls metabolism in hypersaline microbial mat}, journal = {Science of The Total Environment}, volume = {802}, year = {2022}, month = {Jan-01-2022}, pages = {149787}, issn = {00489697}, doi = {10.1016/j.scitotenv.2021.149787}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969721048622}, author = {Mazi{\`e}re, C. and Bodo, M. and Perdrau, M.A. and Cravo-Laureau, C. and Duran, Robert and Christine Dupuy and C{\'e}dric Hubas} } @inbook {9390, title = {CO2 and CH4 emissions from coastal wetland soils}, booktitle = {Carbon Mineralization in Coastal Wetlands}, year = {2022}, pages = {55{\textendash}91}, publisher = {Elsevier}, organization = {Elsevier}, isbn = {978-0-12-819220-7}, doi = {10.1016/B978-0-12-819220-7.00006-6}, url = {https://linkinghub.elsevier.com/retrieve/pii/B9780128192207000066}, author = {Marchand, Cyril and Frank David and Jacotot, Adrien and Leopold, Audrey and Ouyang, Xiaoguang} } @article {8644, title = {Coastal ocean acidification in Brazil: a brief overview and perspectives}, journal = {Arquivos de Ci{\^e}ncias do Mar}, volume = {55}, year = {2022}, month = {Sep-03-2023}, pages = {345 - 368}, issn = {0374-5686}, doi = {10.32360/acmar.v55iEspecial10.32360/acmar.v55iEspecial.78514}, url = {http://periodicos.ufc.br/arquivosdecienciadomar/issue/view/1159}, author = {Cotovicz Jr., Luiz C and Valente Marins, Rozane and Gwena{\"e}l Abril} } @article {8478, title = {Colimitation assessment of phytoplankton growth using a resource use efficiency approach in the Bay of Seine (French-English Channel)}, journal = {Journal of Environmental Management}, volume = {306}, year = {2022}, month = {Jan-03-2022}, pages = {114487}, issn = {03014797}, doi = {10.1016/j.jenvman.2022.114487}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0301479722000603}, author = {Serre-Fredj, L{\'e}on and Chasselin, L{\'e}o and Jolly, Orianne and Jacqueline, Franck and Pascal Claquin} } @article {8735, title = {Colonisation of artificial structures by primary producers: competition and photosynthetic behaviour}, journal = {Biofouling}, year = {2022}, month = {Apr-06-2023}, pages = {1 - 14}, issn = {0892-7014}, doi = {10.1080/08927014.2022.2088285}, url = {https://www.tandfonline.com/doi/full/10.1080/08927014.2022.2088285}, author = {Vivier, Baptiste and Navon, Maxime and Dauvin, Jean-Claude and Chasselin, L{\'e}o and Deloor, Ma{\"e}l and Orvain, Francis and Rusig, Anne-Marie and Mussio, Isabelle and Boutouil, Mohamed and Pascal Claquin} } @article {8845, title = {Contrasting organic matter composition in pristine and eutrophicated mangroves revealed by fatty acids and stable isotopes (Rio de Janeiro, Brazil)}, journal = {Estuarine, Coastal and Shelf Science}, year = {2022}, month = {Jan-09-2022}, pages = {108061}, abstract = {Mangrove sediments have a high capacity of carbon storage, as the result of larger organic matter (OM) inputs from mangrove trees (litter fall and fine roots production) than OM microbial degradation and export to coastal waters. Mangrove sediments also act as traps for suspended matter and particulate OM (POM) from surrounding water masses. Fatty acids (FAs) markers, δ13C and δ15N signatures were used here to characterize the OM composition in three mangroves located in three coastal embayments of the Rio de Janeiro state (Brazil) with increasing urbanization from a pristine mangrove M1 to a moderately impacted mangrove M2 and a highly impacted mangrove M3. In these mangroves, the δ15N signature of tree leaves and sediments increases with anthropogenic influence, consistent with a large-scale eutrophication gradient along the three regions. At mangrove M1, predominant OM inputs from mangrove trees are highlighted by high proportions of long-chain fatty acids, particularly in the inland station, where high organic carbon concentrations (126\ {\textpm}\ 108\ mg\ g-1) indicate limited sedimentation of mineral particles and high carbon storage capacities. The sedimentary OM of M3 mangrove was more labile as confirmed by the higher proportions of algal fatty acids, enriched δ13C signature and the C/N ratio 1.6 times lower (p\ \<\ 0.001) than in the pristine mangrove M1. At the M2 mangrove site, high contribution of bacterial FAs (around 20\%) to sedimentary OM and high proportion of poorly biodegradable saturated fatty acids suggest that bacteria degrade algal labile OM in surface sediments but do not mineralize the most refractory fraction of OM. At the eutrophic M3 site, our findings suggest that deposition of labile POM induced an increase of fungal biomass on the sediment, apparently enhancing the microbial loop, and potentially leading to mineralization of refractory OM and carbon losses through a priming effect.}, issn = {02727714}, doi = {10.1016/j.ecss.2022.108061}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771422003195}, author = {Chynel, Mathias and Rockomanovic, Sofia and Gwena{\"e}l Abril and Barroso, Glenda and Marotta, Humberto and Machado, Wilson and Sanders, Christian J. and Najet Thiney and Tarik Meziane} } @article {9952, title = {The Culture Collection of Cyanobacteria and Microalgae at the French National Museum of Natural History: A Century Old But Still Alive and Kicking! Including in Memoriam: Professor Alain Cout{\'e}. Cryptogamie, Algologie 43 (3) {\textendash} Appendix 3}, journal = {Cryptogamie, Algologie}, volume = {43}, year = {2022}, month = {Jan-03-2022}, doi = {10.5252/cryptogamie-algologie2022v43a3}, url = {https://bioone.org/journals/cryptogamie-algologie/volume-43/issue-3/cryptogamie-algologie2022v43a3/The-Culture-Collection-of-Cyanobacteria-and-Microalgae-at-the-French/10.5252/cryptogamie-algologie2022v43a3.full}, author = {Sahima Hamlaoui and Y{\'e}pr{\'e}mian, Claude and Duval, Charlotte and Marie, Benjamin and Djediat, Chakib and Piquet, B{\'e}r{\'e}nice and Bernard, C{\'e}cile and Duperron, S{\'e}bastien} } @article {8984, title = {C{\'E}PHALOPODES, EXP{\'E}RIMENTATION ANIMALE ET L{\'E}GISLATIONEUROP{\'E}ENNE}, journal = {Bulletin de l{\textquoteright}Acad{\'e}mie V{\'e}t{\'e}rinaire de France}, year = {2021}, doi = {10.3406/bavf .2021.70952}, url = {https://hal.archives-ouvertes.fr/hal-03326974}, author = {Laure Bonnaud-Ponticelli} } @article {8092, title = {Changes to an urban marina soundscape associated with COVID-19 lockdown in Guadeloupe}, journal = {Environmental Pollution}, volume = {289}, year = {2021}, month = {Jan-11-2021}, pages = {117898}, issn = {02697491}, doi = {10.1016/j.envpol.2021.117898}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0269749121014809}, author = {Fr{\'e}d{\'e}ric Bertucci and Lecchini, David and Greeven, C{\'e}line and Brooker, Rohan M. and Minier, Lana and Cordonnier, S{\'e}bastien and Ren{\'e}-Trouillefou, Malika and Parmentier, Eric} } @article {7940, title = {Characteristics of sound production and associated pharyngeal jaws in the tomtate grunt Haemulon aurolineatum (Cuvier, 1830) in Caribbean reefs}, journal = {Belgian Journal of Zoology}, volume = {151}, year = {2021}, month = {Feb-02-2021}, doi = {10.26496/bjz.2021.84}, url = {https://www.belgianjournalofzoology.eu/BJZ/article/view/84}, author = {Millot, Morgane and Fr{\'e}d{\'e}ric Bertucci and Lecchini , David and Smeets, Sarah and Ren{\'e}-Trouillefou, Malika and Parmentier, Eric} } @article {8086, title = {The Chicken and Egg Situation of Thyroid Hormone and Glucocorticoid Signaling during Postembryonic Development}, journal = {Endocrinology}, volume = {162}, year = {2021}, month = {Jan-03-2021}, issn = {0013-7227}, doi = {10.1210/endocr/bqaa243}, url = {https://academic.oup.com/endo/article/doi/10.1210/endocr/bqaa243/6054192}, author = {Sylvie Dufour and Sachs, Laurent M} } @article {8408, title = {A CO2 sink in a tropical coastal lagoon impacted by cultural eutrophication and upwelling}, journal = {Estuarine, Coastal and Shelf Science}, volume = {263}, year = {2021}, month = {Jan-12-2021}, pages = {107633}, issn = {02727714}, doi = {10.1016/j.ecss.2021.107633}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771421004820}, author = {Erbas, Tha{\'\i}s and Marques, Aguinaldo and Gwena{\"e}l Abril} } @article {8387, title = {A comment on {\textquotedblleft}Morphologic and genetic characterization of Corsican and Sardinian trout with comments on Salmotaxonomy{\textquotedblright} by Delling et al. (2020): protected Tyrrhenian trouts must be named}, journal = {Knowledge \& Management of Aquatic Ecosystems}, year = {2021}, month = {Jan-01-2021}, pages = {6}, doi = {10.1051/kmae/2021006}, url = {https://www.kmae-journal.org/10.1051/kmae/2021006}, author = {Denys, Ga{\"e}l} } @article {8388, title = {The complete mitochondrial genome of Barbatula quignardi (B{\u a}cescu-Me{\c s}ter, 1967) (Teleostei, Nemacheilidae)}, journal = {Cybium}, volume = {45}, year = {2021}, pages = {39-42}, abstract = {The complete mitochondrial DNA sequence of Barbatula quignardi (Teleostei, Nemacheilidae) was sequenced from a museum voucher caught in its type locality (Lez River). The sequence was 16,641 bp in length, consisted of 13 protein-coding genes, 22 transfer RNA genes including 2 tRNA-Leu and 2 tRNA-Ser, 2 ribosomic RNA genes and the control region. Intergenic space and overlapping gene sequences were found. The base composition of the whole mtDNA was 28.7\% A, 26.2\% T, 27.2\% C and 17.9\% G.}, author = {Gauliard, Camille and Denys, Ga{\"e}l and Perea, Silvia and Dettai, Agn{\`e}s} } @article {9364, title = {Conservative route to genome compaction in a miniature annelidAbstract}, journal = {Nature Ecology \& Evolution}, volume = {5}, year = {2021}, month = {Jan-02-2021}, pages = {231 - 242}, doi = {10.1038/s41559-020-01327-6}, url = {https://www.nature.com/articles/s41559-020-01327-6}, author = {Mart{\'\i}n-Dur{\'a}n, Jos{\'e} M. and Vellutini, Bruno C. and Marl{\'e}taz, Ferdinand and Cetrangolo, Viviana and Cvetesic, Nevena and Thiel, Daniel and Henriet, Simon and Grau-Bov{\'e}, Xavier and Carrillo-Baltodano, Allan M. and Gu, Wenjia and Kerbl, Alexandra and Marquez, Yamile and Bekkouche, Nicolas and Chourrout, Daniel and G{\'o}mez-Skarmeta, Jose Luis and Irimia, Manuel and Lenhard, Boris and Worsaae, Katrine and Hejnol, Andreas} } @article {8049, title = {Contribution of toothfish depredated on fishing lines to the energy intake of killer whales off the Crozet Islands: a multi-scale bioenergetic approach}, journal = {Marine Ecology Progress Series}, volume = {668}, year = {2021}, month = {Dec-06-2022}, pages = {149 - 161}, abstract = {Fisheries modify prey availability for marine predators by extracting resources but also by providing them with new feeding opportunities. Among these, depredation, which occurs when predators feed on fish caught on fishing gear, is a behavior developed by many species as a way to acquire food through limited foraging effort. However, the extent to which depredated resources from fisheries contribute to the energetic requirements and affect the demography of depredating individuals is unknown. We investigated the contribution of Patagonian toothfish Dissostichus eleginoides depredated on longlines to the energetic requirements of killer whales Orcinus orca around the Crozet Islands (southern Indian Ocean) over the period 2007-2018. Our results indicate that during days when depredation occurred, depredating individuals fulfilled on average 94.1\% of their daily energetic requirements with depredated toothfish. However, the contribution varied from 1.2 to 13.3\% of the monthly energetic requirements and from 2.4 to 8.8\% of the yearly energetic requirements of the total population. Together, these findings suggest that intake of depredated toothfish can be substantial at a fine scale (daily and individually), potentially leading to temporary provisioning effects and changes in predation pressures. These effects become minor (\<10\%), however, when considering the full population over a whole year. The contribution of depredated fish to the annual energetic requirements of the population has increased in recent years, likely due to larger fishing quotas and greater opportunities for whales to depredate, which stresses the importance of accounting for depredation in ecosystem-based management of fishing activity.}, issn = {0171-8630}, doi = {10.3354/meps13725}, url = {https://www.int-res.com/abstracts/meps/v668/p149-161/}, author = {Faure, Johanna and Clara P{\'e}ron and Nicolas Gasco and Massiot-Granier, F{\'e}lix and Spitz, J and Guinet, C and Tixier, P} } @article {7947, title = {Coupling high frequency monitoring and bioassay experiments to investigate a harmful algal bloom in the Bay of Seine (French-English Channel)}, journal = {Marine Pollution Bulletin}, volume = {168}, year = {2021}, month = {Jan-07-2021}, pages = {112387}, abstract = {Coastal ecosystems are increasingly threatened by eutrophication and dystrophy. In this context, the full pattern of a bloom dominated by the dinoflagellate, Lepidodinium chlorophorum, was investigated by a high frequency monitoring buoy equipped with sensors allowing nutrients and photosynthesis measurements. An increase of the N/P ratio affected phytoplankton physiology leading to bloom collapse with a slight oxygen depletion. In parallel, enrichment experiments were performed on the natural bloom population. After 5 days of incubation the community structure, using flow cytometry and several physiological parameters were analysed. The data reveal a potential N and P co-limitation and a decoupling between primary production and productivity in fully enriched conditions. Under unbalanced N/P inputs, high level of alkaline phosphatase activity and transparent exopolymeric particle production, which favour phytoplankton sedimentation, were observed. Nutrient inputs and their stoichiometry control phytoplankton growth, the community structure, physiological regulations, the fate of the bloom and consequences.}, issn = {0025326X}, doi = {10.1016/j.marpolbul.2021.112387}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0025326X21004215}, author = {Serre-Fredj, L{\'e}on and Jacqueline, Franck and Navon, Maxime and Izabel, Guillaume and Chasselin, L{\'e}o and Jolly, Orianne and R{\'e}p{\'e}caud, Michel and Pascal Claquin} } @article {8143, title = {Cumulative effects of marine renewable energy and climate change on ecosystem properties: Sensitivity of ecological network analysis}, journal = {Ecological Indicators}, volume = {121}, year = {2021}, month = {Jan-02-2021}, pages = {107128}, issn = {1470160X}, doi = {10.1016/j.ecolind.2020.107128}, url = {https://linkinghub.elsevier.com/retrieve/pii/S1470160X20310670}, author = {Nogues, Quentin and Raoux, Aurore and Araignous, Emma and Chaalali, Aur{\'e}lie and Hattab, Tarek and Leroy, Boris and Ben Rais Lasram, Frida and David, Val{\'e}rie and Le Loc{\textquoteright}h, Francois and Dauvin, Jean-Claude and Nathalie Niquil} } @article {8705, title = {Can the Threat of Economic Sanctions Ensure the Sustainability of International Fisheries? An Experiment of a Dynamic Non-cooperative CPR Game with Uncertain Tipping Point}, journal = {Environmental and Resource Economics}, volume = {76}, year = {2020}, month = {Jan-05-2020}, pages = {153 - 176}, issn = {0924-6460}, doi = {10.1007/s10640-020-00419-y}, url = {http://link.springer.com/10.1007/s10640-020-00419-y}, author = {Jules, Selles and Sylvain, Bonhommeau and Patrice, Guillotreau and Thomas, Vall{\'e}e} } @article {7897, title = {Is a cannibal different from its conspecifics? A behavioural, morphological, muscular and retinal structure study with pikeperch juveniles under farming conditions}, journal = {Applied Animal Behaviour Science}, volume = {224}, year = {2020}, month = {Jan-03-2020}, pages = {104947}, abstract = {Most studies carried out on personality recognized that personality is defined by behavioural traits consistent through time and/or contexts. In\ fish, most studies on personality were performed either on juveniles (aged between 6 months and 1 year) or adults, but very few focused on the early life stages. The main goal of this study is to characterize behavioural syndromes and to highlight the existence of a personality in young juvenile pikeperch, a species with a strong economic value. To study the consistency of behavioural responses of juvenile (50 and 64 days post-hatch) pikeperch\ Sander lucioperca\ (n = 41, total length = 5.8 {\textpm} 1.0 cm and mass = 1.6 {\textpm} 0.7 g), we performed three tests per\ fish in one day: exploration (cross-maze), dyadic and restraint test. In the cross-maze test, exploratory\ fish were more active and bolder. In the dyadic test,\ fish with the highest number of contacts, showed also more approaches, orientations and avoidance behaviours. In the restraint test, bolder\ fish were more active and tried to escape more often. Consequently, the investigation of the different behavioural responses of each\ fish highlighted behavioural syndromes in this species. Furthermore, for the\ first time, we showed, with a cross-context analysis, that young juvenile pikeperch, responded in the same way to exploration and dyadic test but their responses were opposite in the restraint test. Our results opened new opportunities for testing individual personality in very young\ fish that may help solving some aquaculture problems, such as intra-cohort cannibalism.}, keywords = {Behavioural syndromes, behavioural tests, Individual personality, Pikeperch juveniles, Sander lucioperca}, issn = {01681591}, doi = {10.1016/j.applanim.2020.104947}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0168159120300228}, author = {Tatiana Colchen and Gisbert, E and Ledor{\'e}, Y and Teletchea, F and Fontaine, P and Pasquet, A} } @article {7203, title = {Carbon dioxide sources and sinks in the delta of the Para{\'\i}ba do Sul River (Southeastern Brazil) modulated by carbonate thermodynamics, gas exchange and ecosystem metabolism during estuarine mixing}, journal = {Marine Chemistry}, volume = {226}, year = {2020}, month = {Jan-10-2020}, pages = {103869}, issn = {03044203}, doi = {10.1016/j.marchem.2020.103869}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0304420320301237}, author = {Cotovicz, Luiz C. and Vidal, Luciana O. and de Rezende, Carlos Eduardo and Bernardes, Marcelo C. and Knoppers, Bastiaan A. and Sobrinho, Rodrigo L. and Cardoso, Renan P. and Muniz, Marcelo and dos Anjos, Roberto Meigikos and Biehler, Antoine and Gwena{\"e}l Abril} } @article {7587, title = {Comparison of approaches for incorporating depredation on fisheries catches into Ecopath}, journal = {ICES Journal of Marine Science}, year = {2020}, month = {Jan-11-2022}, issn = {1054-3139}, doi = {10.1093/icesjms/fsaa219}, url = {https://academic.oup.com/icesjms/advance-article/doi/10.1093/icesjms/fsaa219/6000671}, author = {Clavareau, Lyndsay and Marzloff, Martin P and Trenkel, Verena M and Bulman, Catherine M and Gourguet, Sophie and Le Gallic, Bertrand and Hernvann, Pierre-Yves and Clara P{\'e}ron and Nicolas Gasco and Faure, Johanna and Tixier, Paul}, editor = {Northridge, Simon} } @article {8986, title = {Comparison of embryonic and adult shells of Sepia officinalis (Cephalopoda, Mollusca)}, journal = {Zoomorphology}, volume = {139}, year = {2020}, pages = {151-169}, doi = {10.1007/s00435-020-00477-2}, url = {https://hal.archives-ouvertes.fr/hal-02557254}, author = {Dauphin, Yannicke and Luquet, Gilles and Percot, Aline and Laure Bonnaud-Ponticelli} } @article {8394, title = {The complete mitochondrial genome of Thymallus thymallus (Linnaeus, 1758) (Actinopterygii, Salmonidae) obtained by long range PCRs and double multiplexing}, journal = {Cybium}, volume = {44}, year = {2020}, pages = {91-94}, abstract = {Le g{\'e}nome mitochondrial complet de Thymallus thymallus (Actinopterygii, Salmonidae) provenant d{\textquoteright}un voucher enregistr{\'e} en collection et captur{\'e} dans l{\textquoteright}Ain (bassin du Rh{\^o}ne) a {\'e}t{\'e} s{\'e}quenc{\'e}. La s{\'e}quence d{\textquoteright}une longueur de 16 660 pb, contient 13 g{\`e}nes codants, 22 ARN de transfert dont 2 ARNt-Leu et 2 ARNt-Ser, 2 g{\`e}nes ARN ribosomiques et la r{\'e}gion de contr{\^o}le. Un espace interg{\'e}nique et des s{\'e}quences se chevauchant ont {\'e}t{\'e} trouv{\'e}s. La composition des bases du mitog{\'e}nome est de 27,5\% A, 27,9\% T, 27,1\% C et 17,5\% G. Ce mitog{\'e}nome a {\'e}t{\'e} s{\'e}quenc{\'e} pour moins de 20 euros.}, author = {Denys, Ga{\"e}l and Secci-Petretto, Giulia and Gomes-Dos-Santos, Andr{\'e}} } @article {6866, title = {A current synthesis on the effects of electric and magnetic fields emitted by submarine power cables on invertebrates}, journal = {Marine Environmental Research}, volume = {159}, year = {2020}, pages = {104958}, abstract = {The goal of clean renewable energy production has promoted the large-scale deployment of marine renewable energy devices, and their associated submarine cable network. Power cables produce both electric and magnetic fields that raise environmental concerns as many marine organisms have magneto and electroreception abilities used for vital purposes. Magnetic and electric fields{\quotesinglbase}{\"A}{\^o} intensities decrease with distance away from the cable. Accordingly, the benthic and the sedimentary compartments are exposed to the highest field values. Although marine invertebrate species are the major fauna of these potentially exposed areas, they have so far received little attention. We provide extensive background knowledge on natural and anthropogenic marine sources of magnetic and electric fields. We then compile evidence for magneto- and electro-sensitivity in marine invertebrates and further highlight what is currently known about their interactions with artificial sources of magnetic and electric fields. Finally we discuss the main gaps and future challenges that require further investigation.}, issn = {0141-1136}, doi = {https://doi.org/10.1016/j.marenvres.2020.104958}, url = {http://www.sciencedirect.com/science/article/pii/S0141113619307706}, author = {Luana Albert and Fran{\c c}ois Deschamps and Aur{\'e}lie Jolivet and Fr{\'e}d{\'e}ric Olivier and Laurent Chauvaud and Sylvain Chauvaud} } @article {7174, title = {Can we generate robust species distribution models at the scale of the Southern Ocean?}, journal = {Diversity and Distributions}, volume = {25}, year = {2019}, month = {Jan-01-2019}, pages = {21 - 37}, doi = {10.1111/ddi.12835}, url = {http://doi.wiley.com/10.1111/ddi.12835}, author = {Fabri-Ruiz, Salom{\'e} and Danis, Bruno and David, Bruno and Sauc{\`e}de, Thomas}, editor = {Treml, Eric} } @article {9315, title = {Caridina malanda, a new species of freshwater shrimp (Crustacea: Decapoda: Atyidae) from the Wet Tropics World Heritage area, north{\textendash}eastern Queensland, Australia}, journal = {Zootaxa}, volume = {4652}, year = {2019}, month = {Jul-08-2019}, abstract = {Integrated molecular and morphological studies of newly collected and curated specimens of the genus\ Caridina\ from the Atherton Tablelands, Wet Tropics World Heritage Area in north{\textendash}eastern Queensland, Australia indicated the presence of an undescribed species belonging to the\ Caridina zebra\ Short 1993 complex. This species is somewhat intermediate, although distinct on the basis of molecular data and morphology, from two known sympatric species,\ Caridina zebra\ and\ C. confusa\ Choy \& Marshall 1997, and an allopatric species,\ C. spinula\ Choy \& Marshall 1997, from the Cape York Peninsula, about 500 km north. It is described here as a new species,\ C. malanda\ sp. nov., and compared with similar congeners. A key for the identification of the species, as well as notes on its distribution, ecology, and conservation, are provided.}, issn = {1175-5326}, doi = {10.11646/zootaxa.4652.110.11646/zootaxa.4652.1.5}, url = {https://www.mapress.com/zt/issue/view/zootaxa.4652.1}, author = {CHOY, SATISH and PAGE, TIMOTHY J. and de Mazancourt, Valentin and MOS, BENJAMIN} } @article {6741, title = {Changes in marine phytoplankton diversity: Assessment under the Marine Strategy Framework Directive}, journal = {Ecological Indicators}, volume = {102}, year = {2019}, pages = {265 - 277}, abstract = {The Marine Strategy Framework Directive requires EU Member States to assess the Good Environmental Status (GES) of their marine waters in a coherent and strategic manner. For the regional assessment of biodiversity, the OSPAR Intersessional Coordination Group of Biodiversity Assessment and Monitoring (ICG-COBAM) provides substantial advice. Through expert working groups, phytoplankton indicators are currently being developed to measure the state and the change in pelagic diversity, to quantify food web dynamics and to measure the extent of eutrophication impacts. We developed a multi-metric indicator that is compliant with the common OSPAR indicator {\textquotedblleft}Changes in plankton diversity{\textquotedblright} (PH3). The aim was to describe the structure of the phytoplankton community (alpha diversity) and to detect significant temporal changes (beta diversity) to evaluate the health of pelagic habitats. In this pilot study, we used three coastal time-series in the Western Channel and the north of the Bay of Biscay (North Atlantic, France) to test the efficiency and the performance of several existing diversity indices. We validated two alpha diversity indices, namely the Menhinick Index (D) and the Hulburt Index (δ), based on their complementary ecological information, their strong relationship with habitat characteristics, and their relative ease of interpretation for stakeholders. Temporal shifts or rate of change in community structure were detected by the Local Contributions to Beta Diversity index (LCBD; a beta diversity measure). For the years where significantly high LCBD values were found, the Importance Value Index (IVI) was calculated to potentially identify the taxa (genus) responsible for the {\textquotedblleft}unusual{\textquotedblright} community structure. For example, at the Ouest Loscolo site in 2008, an elevated LCBD (0.45) coincided with a high dominance value (Hulburt{\textquoteright}s Index) caused by the occurrence of a monospecific bloom of Leptocylindrus spp. (IVI = 73\%) in July (2.22 {\texttimes} 106 cells L-1) and October (8 {\texttimes} 106 cells L-1). In this way, PH3 informs on different aspects of phytoplankton diversity from a community to a genus level. At the current stage of development, however, PH3 acts as a {\textquotedblleft}surveillance{\textquotedblright} rather than an operational indicator since the relationship to GES is not directly tracked. In the future, by additional testing of PH3 and extending the geographical scope, the robustness of the assessment could be further determined across the OSPAR Maritime Area.}, keywords = {community composition, Good environmental status, Indicators, Marine policy, MSFD, OSPAR, Pelagic habitat, Plankton}, issn = {1470-160X}, doi = {https://doi.org/10.1016/j.ecolind.2019.02.009}, url = {http://www.sciencedirect.com/science/article/pii/S1470160X19301190}, author = {Rombouts, I. and Nathalie Simon and Anais Aubert and T. Cariou and Eric Feunteun and Laurent Guerin and M. Hoebeke and A. McQuatters-Gollop and F. Rigaut-Jalabert and Luis Felipe Artigas} } @article {6796, title = {Characterization of an evolutionarily conserved calcitonin signalling system in a lophotrochozoan, the Pacific oyster (Crassostrea gigas) }, journal = {The Journal of Experimental Biology}, volume = {222}, year = {2019}, month = {Jan-07-2019}, pages = {jeb201319}, issn = {0022-0949}, doi = {10.1242/jeb.201319}, url = {http://jeb.biologists.org/lookup/doi/10.1242/jeb.201319}, author = {Julie Schwartz and R{\'e}alis-Doyelle, Emilie and Marie-Pierre Dubos and Lefranc, Benjamin and Leprince, J{\'e}r{\^o}me and Pascal Favrel} } @article {6116, title = {Characterization of an evolutionarily conserved calcitonin signalling system in a lophotrochozoan, the Pacific oyster ().}, journal = {J Exp Biol}, volume = {222}, year = {2019}, month = {2019 Jul 05}, abstract = {

In Protostoma, the diuretic hormone 31 (DH31) signalling system was long considered as the orthologue of the chordate calcitonin (CT) signalling system. Using the Pacific oyster () transcriptomic database GigaTON, we characterized seven G-protein-coupled receptors (GPCRs) named Cragi-CTR1-7 and phylogenetically related to chordate CT receptors (CTRs) and to protostome DH31 receptors. Two CT precursors (Cragi-CTP1 and Cragi-CTP2) containing two CT-type peptides and encoded by two distinct genes with a similar organization were also characterized. These oyster neuropeptides (Cragi-CT1/2) exhibit the two N-terminal paired cysteine residues and, except CTP2-derived peptide (Cragi-CTP2dp), show the C-terminal proline-amide motif typical of deuterostome CT-type peptides. All mature Cragi-CTs except Cragi-CTP2dp were detected in visceral ganglion extracts using mass spectrometry. Cell-based assays revealed that the previously characterized oyster receptors Cg-CT-R and Cragi-CTR2 were specifically activated by Cragi-CT1b and Cragi-CT2, respectively. This activation does not require the co-expression of receptor activity-modifying proteins (RAMPs). Thus, oyster CT signalling appears functionally more closely related to vertebrate CT/CTR signalling than to calcitonin gene-related peptide/calcitonin receptor-like receptor (CGRP/CLR) signalling. Gene expression profiles in different adult tissues and in oysters acclimated to brackish water suggest the potential implication of both Cg-CT-R/Cragi-CT1b and Cragi-CTR2/Cragi-CT2 in water and ionic regulations, although with apparently opposite effects. The present study represents the first comprehensive characterization of a functional CT-type signalling system in a protostome and provides evidence for its evolutionarily ancient origin and its early role in osmotic homeostasis.

}, issn = {1477-9145}, doi = {10.1242/jeb.201319}, author = {Julie Schwartz and R{\'e}alis-Doyelle, Emilie and Marie-Pierre Dubos and Lefranc, Benjamin and Leprince, J{\'e}r{\^o}me and Pascal Favrel} } @article {5830, title = {Coastal waters freshening and extreme seasonality affect organic matter sources, quality, and transfers in a High Arctic fjord (Young Sound, Greenland)}, journal = {Marine Ecology Progress Series}, volume = {610}, year = {2019}, pages = {15-31}, abstract = {

Arctic benthic ecosystems are expected to experience strong modifications in the dynamics of primary producers and/or benthic-pelagic coupling under climate change. However, lack of knowledge about the influence of physical constraints (e.g. ice-melting associated gradients) on organic matter sources, quality, and transfers in systems such as fjords can impede predictions of the evolution of benthic-pelagic coupling in response to global warming. Here, sources and quality of particulate organic matter (POM) and sedimentary organic matter (SOM) were characterized along an inner-outer gradient in a High Artic fjord (Young Sound, NE Greenland) exposed to extreme seasonal and physical constraints (ice-melting associated gradients). The influence of the seasonal variability of food sources on 2 dominant filter-feeding bivalves (Astarte moerchi and Mya truncata) was also investigated. Results revealed the critical impact of long sea ice/snow cover conditions prevailing in Young Sound corresponding to a period of extremely poor and degraded POM and SOM. Freshwater inputs had a very local impact during summer, with relatively more degraded POM at the surface compared to bottom waters that were less nutritionally depleted but more heterogeneous among the sampled stations. Terrestrial inputs contributed to the SOM composition but showed a large variability along the fjord. Finally, diet analyses underlined the contrasted nutritional conditions, showing much higher lipid reserves in A. moerchi than in M. truncata during winter. Under a scenario with increased freshwater input, such results suggest a decline in organic matter quality and production in Young Sound, with subsequent impacts on benthic food webs.

}, doi = {10.3354/meps12857}, url = {https://www.int-res.com/abstracts/meps/v610/p15-31/}, author = {Bridier, Guillaume and Tarik Meziane and Grall, Jacques and Laurent Chauvaud and Sejr, Mikael K. and Menneteau, Sylvain and Fr{\'e}d{\'e}ric Olivier} } @article {7104, title = {Commercial traceability of Arapaima spp. fisheries in the Amazon basin: can biogeochemical tags be useful?}, year = {2019}, author = {Santos, Roberto and Hauser, Marilia and Duponchelle, Fabrice and Carvajal, Fernando and Pecheyran, Christophe and B{\'e}rail, Sylvain and Marc Pouilly and Pereira, Luciana} } @article {6579, title = {Comparing the efficiency of hypoxia mitigation strategies in an urban, turbid tidal river via a coupled hydro-sedimentary biogeochemical model}, journal = {Natural Hazards and Earth System Sciences}, volume = {19}, year = {2019}, month = {Jan-01-2019}, pages = {2551 - 2564}, doi = {10.5194/nhess-19-2551-2019}, url = {https://www.nat-hazards-earth-syst-sci.net/19/2551/2019/https://www.nat-hazards-earth-syst-sci.net/19/2551/2019/nhess-19-2551-2019.pdf}, author = {Lajaunie-Salla, Katixa and Sottolichio, Aldo and Schmidt, Sabine and Litrico, Xavier and Binet, Guillaume and Gwena{\"e}l Abril} } @article {5930, title = {The complex study of complexes: The first well-supported phylogeny of two species complexes within genus Caridina (Decapoda: Caridea: Atyidae) sheds light on evolution, biogeography, and habitat}, journal = {Molecular Phylogenetics and Evolution}, volume = {131}, year = {2019}, pages = {164-180}, abstract = {

Atyid shrimps, a key component of tropical freshwater ecosystems, face multiple anthropogenic threats and thus

need special attention. With more than 300 described species, the genus Caridina is the most speciose of all the

Caridea infra-order. Caridina spp. occupy diverse habitats in tropical freshwaters of the Indo-West Pacific region.

Several species complexes have been recognized, based on common morphological features, but little is known

about how well these morphological characteristics align with phylogenetic characteristics. Furthermore, no

phylogeny of the genus Caridina published so far has provided well-resolved and supported relationships among

different species, thus impeding the possibility of proposing evolutionary hypotheses. In this study we used next

generation sequencing (NGS) to provide new insights into the phylogenetic relationships among the genus

Caridina, focusing on two complexes: {\textquoteleft}Caridina nilotica{\textquoteright} and {\textquoteleft}Caridina weberi{\textquoteright}. We collected 92 specimens belonging

to these two groups from most of their known geographical range, representing 50 species, for which we

sequenced seven mitochondrial genes and two nuclear markers using ion torrent NGS. We performed a phylogenetic

analysis, which yielded the first well-supported tree for the genus Caridina. On this tree were mapped the

geographic ranges and the habitats used by the different species, and a time calibration was tested. We found the

driving factors that most likely account for separation of clades are differences in habitat and to a lesser extent

geography. This work provides new insights into the taxonomy of this group and identifies opportunities for

further studies in order to fill knowledge gaps that currently impede the management and conservation of atyid

species.

1. Introduction

}, keywords = {amphidromy, freshwater shrimp, Indo-Pacific, Mitochondrial genome, Molecular systematics, taxonomy}, author = {de Mazancourt, Valentin and Klotz, Werner and Marquet, G{\'e}rard and Mos, B and Rogers, C and Philippe Keith} } @article {6014, title = {Contrasting biodiversity of eel larvae across the central Indian Ocean subtropical gyre}, journal = {Deep Sea Research Part II: Tropical Studies in Oceanography}, volume = {161}, year = {2019}, pages = {120{\textendash}131}, abstract = {The unique semi-enclosed Indian Ocean basin includes large Mascarene\ Plateau\ banks, offshore\ coral-reef\ islands, seasonal equatorial current jets, and cross-basin westward South Equatorial Current (SEC) flow, making it interesting for studying long larval-duration eel larvae (leptocephali) and regional eel biodiversity. Three surveys for\ leptocephali\ (in 2003, 2006, 2010) included sampling west of the Mascarene Plateau (west), a major survey and other stations off Sumatra and Java (east), and 2 cross-basin transects across the SEC. The highest numbers of leptocephali species were observed along Sumatra (2003: ~143 species; 2006: 72 species) and south of Java (2010: 69), with intermediate numbers being collected in the western Indian Ocean (2006: 71; 2010: 53) compared to low numbers in the hydrographically variable offshore zones (2006, 2010: 3{\textendash}27). The larger\ continental shelf\ areas along Sumatra including the Mentawai Islands provide more coral reef and other habitats for species such as congrid, muraenid, ophichthid, and chlopsid eels compared to the Mascarene Plateau banks. Some larvae in these areas get transported offshore, but the majority of offshore larvae were of Nemichthyidae and Serrivomeridae mesopelagic eels that were spawning across the basin. Habitat differences between the southern Mascarene Plateau and Sumatra and southern Indonesia along the edge of the high biodiversity Coral Triangle likely explain the higher biodiversity of eel larvae observed along the western side of the basin, which for the Congridae and Ophichthidae included more species than observed previously within the central Indonesian Seas. In addition to local spawning, seasonal currents likely transport larger larvae towards Sumatra from the north or west and larvae may enter the basin from the Indonesian\ Throughflow\ in the east, but it is unknown if equatorial jets or the SEC can transport larvae across the whole basin.}, doi = {doi.org/10.1016/j.dsr2.2018.02.012}, url = {https://www.sciencedirect.com/science/article/pii/S0967064517304393}, author = {Miller, Michael J and Wouthuyzen, Sam and Eric Feunteun and Aoyama, Jun and Watanabe, Shun and Syahailatua, Augy and Kuroki, Mari and Robinet, Tony and Hagihara, Seishi and Otake, Tsuguo and others} } @article {6688, title = {Correlations between broad-scale taxonomic and genetic differentiations suggest a dominant imprint of historical processes on beta diversities}, journal = {Journal of Biogeography}, volume = {46}, year = {2019}, month = {Jan-05-2020}, pages = {1083 - 1095}, issn = {0305-0270}, doi = {10.1111/jbi.2019.46.issue-510.1111/jbi.13559}, url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/jbi.13559}, author = {Robuchon, Marine and Leroy, Boris and J{\'e}z{\'e}quel, C{\'e}line and Hugueny, Bernard} } @article {7106, title = {Correspondence: An appraisal of the effects on human health and the environment of using light-emitting diodes}, journal = {Lighting Research \& Technology}, volume = {51}, year = {2019}, month = {Jan-12-2019}, pages = {1275 - 1276}, issn = {1477-1535}, doi = {10.1177/1477153519891878}, url = {http://journals.sagepub.com/doi/10.1177/1477153519891878}, author = {Martinsons, Christophe and Attia, Dina and Behar-Cohen, Francine and Carr{\'e}, Samuel and Enouf, Olivier and Jack Falcon and Gronfier, Claude and Hicks, David and Metlaine, Arnaud and Tahkamo, Leena and Torriglia, Alicia and Vi{\'e}not, Fran{\c c}oise} } @article {8398, title = {Cottus petiti Bǎcescu \& Bǎcescu-Me{\c s}ter, 1964 (Cottidae)}, journal = {Cybium}, volume = {43}, year = {2019}, pages = {215-216}, author = {Lef{\`e}bvre, St{\'e}phane and Richard, Sylvain and Beaudou, Domninique and Denys, Ga{\"e}l} } @article {6693, title = {Current and future climatic regions favourable for a globally introduced wild carnivore, the raccoon Procyon lotor}, journal = {Scientific Reports}, volume = {9}, year = {2019}, month = {Jan-12-2019}, doi = {10.1038/s41598-019-45713-y}, url = {https://www.nature.com/articles/s41598-019-45713-y}, author = {Louppe, Vivien and Leroy, Boris and Herrel, Anthony and Veron, G{\'e}raldine} } @article {5465, title = {Carbon biogeochemistry and CO2 emissions in a human impacted and mangrove dominated tropical estuary (Can Gio, Vietnam)}, journal = {Biogeochemistry}, year = {2018}, month = {27/04/2018}, pages = {1-15}, abstract = {

The quantitative contribution of tropical estuaries to the atmospheric CO2\ budget has large uncertainties, both spatially and seasonally. We investigated the seasonal and spatial variations of carbon biogeochemistry downstream of Ho Chi Minh City (Southern Vietnam). We sampled four sites distributed from downstream of a highly urbanised watershed through mangroves to the South China Sea coast during the dry and wet seasons. Measured partial pressure of CO2(pCO2) ranged from 660 to 3000\ μatm during the dry season, and from 740 to 5000\ μatm during the wet season. High organic load, dissolved oxygen saturation down to 17\%, and pCO2up to 5000\ μatm at the freshwater endmember of the estuary reflected the intense human pressure on this ecosystem. We show that releases from mangrove soils affect the water column pCO2\ in this large tropical estuary (~600\ m wide and 10{\textendash}20\ m deep). This study is among the few to report direct measurements of both water pCO2\ and CO2\ emissions in a Southeast Asian tropical estuary located in a highly urbanised watershed. It shows that the contribution of such estuaries may have been previously underestimated, with CO2\ emissions ranging from 74 to 876\ mmol\ m-2\ day-1\ at low current velocity (\<\ 0.2\ m\ s-1). Corresponding gas transfer velocities k600,\ ranging from 1.7 to 11.0\ m\ day-1,\ were about 2 to 4 times of k600\ estimated using published literature equations.

}, doi = {https://doi.org/10.1007/s10533-018-0444-z}, author = {Frank David and Tarik Meziane and Tran-thi, N and Truong Van, V and Th{\`a}nh-Nho, N and Pierre Taillardat and Cyril Marchand} } @article {5920, title = {Carbon dioxide degassing at the groundwater-stream-atmosphere interface: isotopic equilibration and hydrological mass balance in a sandy watershed}, journal = {Journal of Hydrology}, volume = {558}, year = {2018}, pages = {129{\textendash}143}, doi = {10.1016/j.jhydrol.2018.01.003}, url = {https://doi.org/10.1016/j.jhydrol.2018.01.003}, author = {Loris Deirmendjian and Gwena{\"e}l Abril} } @article {5920, title = {Carbon dioxide degassing at the groundwater-stream-atmosphere interface: isotopic equilibration and hydrological mass balance in a sandy watershed}, journal = {Journal of Hydrology}, volume = {558}, year = {2018}, pages = {129{\textendash}143}, doi = {10.1016/j.jhydrol.2018.01.003}, url = {https://doi.org/10.1016/j.jhydrol.2018.01.003}, author = {Loris Deirmendjian and Gwena{\"e}l Abril} } @article {5917, title = {Carbon dynamics and CO2 and CH4 outgassing in the Mekong delta}, journal = {Biogeosciences}, volume = {15}, year = {2018}, pages = {1093{\textendash}1114}, doi = {10.5194/bg-15-1093-2018}, url = {https://doi.org/10.5194/bg-15-1093-2018}, author = {Alberto V. Borges and Gwena{\"e}l Abril and Steven Bouillon} } @article {9382, title = {Carbon dynamics and inconstant porewater input in a mangrove tidal creek over contrasting seasons and tidal amplitudes}, journal = {Geochimica et Cosmochimica Acta}, volume = {237}, year = {2018}, pages = {32{\textendash}48}, abstract = {Constraining the contribution of mangrove-derived carbon in tidal creeks is fundamental to understanding the fate of mangrove primary production and the role of mangroves as coastal carbon sinks. Porewater measurements and 24-h time series in a mangrove tidal creek were conducted during the dry and wet season, and over contrasting tidal ranges at the Can Gio Biosphere Reserve, Vietnam. Surface water carbon concentrations (dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), partial pressure of carbon dioxide (pCO2)) and their respective d13C values were correlated with radon, suggesting that porewater input drives mangrove-derived carbon in the tidal creek. Based on three complementary mixing models, porewater input contributed to about 30\% of the water volume and 46\% to 100\% of DOC and DIC pools in the tidal creek at low tide, with variabilities between seasons and tidal amplitudes. The creek carbon pool was 88\% DIC, 6\% DOC, and 6\% particulate organic carbon (POC). The pCO2 values during the wet season (2973{\textendash}16,495 latm) were on average 5-fold higher than during the dry season (584{\textendash}2946 latm). This was explained by a potential greater mineralization attributed to higher organic matter availability and residual humidity that stimulate bacterial activity, and by a potential tidal dilution changing the pCO2/DIC ratio as suggested by the Revelle factor. Consequently, average CO2 evasion from the creek was estimated at 327{\textendash}427 mmolC m{\`A}2 d{\`A}1 during the wet season and 92{\textendash}213 mmolC m{\`A}2 d{\`A}1 during the dry season, using two independent approaches. Tidal amplitude seemed to influence porewater input and its carbon loads, with a higher contribution during frequent and high tidal amplitudes (symmetric). However, the highest input occurred in a tidal cycle which was preceded by tidal cycle of low amplitude (asymmetric). We explain this ambiguity by the influence of both, rapid water turnover intensifying porewater exchange, and long water residence time enhancing carbon load in porewater.}, issn = {00167037}, doi = {10.1016/j.gca.2018.06.012}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0016703718303272}, author = {Taillardat, Pierre and Ziegler, Alan D. and Friess, Daniel A. and Widory, David and Truong Van, Vinh and Frank David and Thanh-Nho, Nguyen and Marchand, Cyril} } @article {5926, title = {Caridina variabilirostris (Crustacea: Decapoda: Atyidae), a new species of freshwater shrimp from Pohnpei (Micronesia)}, journal = {European Journal of Taxonomy}, volume = {453}, year = {2018}, pages = {1-16}, abstract = {

Recently de Mazancourt\ et al.(2017) highligted the {\textquotedblleft}Pinocchio-shrimp effect{\textquotedblright} on a new species of Atyid shrimp from Pohnpei (Micronesia). In combinating morphological data with a genetical analysis, this species is described here with its ecological distribution.\ The status of this new species is clarified and finally, neither\ C. brachydactyla\ De Man 1908nor\ C. mertoniJ. Roux, 1911 occur in Pohnpei.

}, author = {de Mazancourt, Valentin and Marquet, G{\'e}rard and Philippe Keith} } @article {5564, title = {Characterization of a tachykinin signalling system in the bivalve mollusc Crassostrea gigas}, journal = {General and Comparative Endocrinology}, volume = {266}, year = {2018}, pages = {110-118}, type = {regular}, abstract = {

Although tachykinin-like neuropeptides have been identified in molluscs more than two decades ago, knowledge on their function and signalling has so far remained largely elusive. We developed a cell-based assay to address the functionality of the tachykinin G-protein coupled receptor (Cragi-TKR) in the oyster Crassostrea gigas. The oyster tachykinin neuropeptides that are derived from the tachykinin precursor gene Cragi-TK activate the Cragi-TKR in nanomolar concentrations. Receptor activation is sensitive to Ala-substitution of critical Cragi-TK amino acid residues. The Cragi-TKR gene is expressed in a variety of tissues, albeit at higher levels in the visceral ganglia (VG) of the nervous system. Fluctuations of Cragi-TKR expression is in line with a role for TK signalling in C. gigas reproduction. The expression level of the Cragi-TK gene in the VG depends on the nutritional status of the oyster, suggesting a role for TK signalling in the complex regulation of feeding in C. gigas.

}, doi = {https://doi.org/10.1016/j.ygcen.2018.05.003}, author = {Marie-Pierre Dubos and Sven Zels and Julie Schwartz and Jeremy Pasquier and Liliane Schoofs and Pascal Favrel} } @article {5662, title = {Characterization of gonadotropin-releasing hormone (GnRH) genes from cartilaginous fish: evolutionary perspectives.}, journal = {Frontiers in Neuroscience}, volume = {12}, year = {2018}, pages = {607}, author = {Gaillard, A-L and Tay, Boon-Hui and Perez-Sirkin, Daniela and Anne-Gaelle Lafont and De Flori, C{\'e}line and Vissio, Paula G. and Mazan, Sylvie and Sylvie Dufour and Venkatesh, Byrappa and Tostivint, Herv{\'e}} } @article {6078, title = {Chemically-Mediated Interactions Between Macroalgae, Their Fungal Endophytes, and Protistan Pathogens}, journal = {Frontiers in Microbiology}, volume = {9}, year = {2018}, pages = {3161}, abstract = {

Filamentous fungi asymptomatically colonise the inner tissues of macroalgae, yet their ecological roles remain largely underexplored. Here, we tested if metabolites produced by fungal endophytes might protect their host against a phylogenetically broad spectrum of protistan pathogens. Accordingly, the cultivable fungal endophytes of four brown algal species were isolated and identified based on LSU and SSU sequencing. The fungal metabolomes were tested for their ability to reduce the infection by protistan pathogens in the algal model Ectocarpus siliculosus. The most active metabolomes effective against the oomycetes Eurychasma dicksonii and Anisolpidium ectocarpii, and the phytomixid Maullinia ectocarpii were further characterized chemically. Several pyrenocines isolated from Phaeosphaeria sp. AN596H efficiently inhibited the infection by all abovementioned pathogens. Strikingly, these compounds also inhibited the infection of nori (Pyropia yezoensis) against its two most devastating oomycete pathogens, Olpidiopsis pyropiae and Pythium porphyrae. We thus demonstrate that fungal endophytes associated with brown algae produce bioactive metabolites which might confer protection against pathogen infection. These results highlight the potential of metabolites to finely-tune the outcome of molecular interactions between algae, their endophytes and protistan pathogens. This also provide proof-of-concept towards the applicability of such metabolites in marine aquaculture to control otherwise untreatable diseases.

}, issn = {1664-302X}, doi = {10.3389/fmicb.2018.03161}, url = {https://www.frontiersin.org/article/10.3389/fmicb.2018.03161}, author = {Vallet, Marine and Strittmatter, Martina and Mur{\'u}a, Pedro and Lacoste, Sandrine and Dupont, Jo{\"e}lle and C{\'e}dric Hubas and Genta-Jouve, Gregory and Claire M. M. Gachon and Kim, Gwang Hoon and Prado, Soizic} } @article {8568, title = {Combined use of two supervised learning algorithms to model sea turtle behaviours from tri-axial acceleration data}, journal = {Journal of Experimental Biology}, year = {2018}, month = {Jan-01-2018}, issn = {0022-0949}, doi = {10.1242/jeb.177378}, url = {https://journals.biologists.com/jeb/article/doi/10.1242/jeb.177378/262989/Combined-use-of-two-supervised-learning-algorithms}, author = {Jeantet, L. and Dell{\textquoteright}Amico, F. and Forin-Wiart, M. A. and Coutant, M. and Bonola, M. and Etienne, D. and Gresser, J. and Regis, S. and Lecerf, N. and Lefebvre, F. and de Thoisy, B. and Le Maho, Y. and Brucker, M. and Ch{\^a}telain, N. and Laesser, R. and Crenner, F. and Handrich, Y. and Wilson, R. and Chevallier, D.} } @article {5965, title = {Comparative histology of caniniform teeth in some predatory ichthyophagous teleosts}, journal = {Cybium}, volume = {42}, year = {2018}, pages = {075-081}, doi = {10.26028/cybium/2018-421-006}, url = {http://sfi-cybium.fr/fr/comparative-histology-caniniform-teeth-some-predatory-ichthyophagous-teleosts}, author = {Texereau, M and Germain, D and Meunier, Francois J.} } @article {6819, title = {Comparison of Chemoreceptive Abilities of the Hydrothermal Shrimp Mirocaris fortunata and the Coastal Shrimp Palaemon elegans}, journal = {Chemical Senses}, volume = {43}, year = {2018}, month = {06}, pages = {489-501}, abstract = {Chemoreception might play an important role for endemic shrimp that inhabit deep and dark hydrothermal vents to find food sources and to locate active edifices that release specific chemicals. We compared the chemosensory abilities of the hydrothermal shrimp Mirocaris fortunata and the coastal related species, Palaemon elegans. The detection of diverse ecologically relevant chemical stimuli by the antennal appendages was measured with electroantennography. The 2 species can detect food-related odor and sulfide, a short-distance stimulus, via both their antennae and antennules. Neither iron nor manganese, considered as long-distance stimuli, was detected by the antennal appendages. Investigation of the ultrastructure of aesthetasc sensilla revealed no specific features of the hydrothermal species regarding innervation by olfactory sensory neurons. Pore-like structures occurring in the aesthetasc cuticle and dense bacterial covering seem to be unique to hydrothermal species, but their potential link to chemoreception remains elusive.}, issn = {0379-864X}, doi = {10.1093/chemse/bjy041}, url = {https://doi.org/10.1093/chemse/bjy041}, author = {Machon, Julia and Lucas, Philippe and Juliette Ravaux and Magali Zbinden} } @article {8557, title = {Connecting paths between juvenile and adult habitats in the Atlantic green turtle using genetics and satellite tracking}, journal = {Ecology and Evolution}, volume = {8}, year = {2018}, month = {Jan-12-2018}, pages = {12790 - 12802}, issn = {2045-7758}, doi = {10.1002/ece3.2018.8.issue-2410.1002/ece3.4708}, url = {https://onlinelibrary.wiley.com/toc/20457758/8/24}, author = {Chambault, Philippine and de Thoisy, Beno{\^\i}t and Huguin, Ma{\"\i}lis and Martin, Jordan and Bonola, Marc and Etienne, Denis and Gresser, Julie and Hielard, Ga{\"e}lle and Mailles, Julien and Vedie, Fabien and Barnerias, Cyrille and Sutter, Emmanuel and Guillemot, Blandine and Dumont-Dayot, {\'E}milie and R{\'e}gis, Sidney and Lecerf, Nicolas and Lefebvre, Fabien and Frouin, C{\'e}dric and Aubert, Nathalie and Guimera, Christelle and Bordes, Robinson and Thieulle, Laurent and Duru, Matthieu and Bouaziz, Myriam and Pinson, Adrien and Flora, Fr{\'e}d{\'e}ric and Queneherve, Patrick and Woignier, Thierry and Allenou, Jean-Pierre and Cimiterra, Nicolas and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Maillet, Thomas and Rangon, Luc and Chanteux, No{\'e}mie and Chanteur, B{\'e}n{\'e}dicte and B{\'e}ranger, Christelle and Le Maho, Yvon and Petit, Odile and Chevallier, Damien} } @article {6929, title = {Contamination of marine fauna by chlordecone in Guadeloupe: evidence of a seaward decreasing gradient}, journal = {Environmental Science and Pollution Research}, volume = {25}, year = {2018}, month = {Jan-05-2018}, pages = {14294 - 14301}, issn = {0944-1344}, doi = {10.1007/s11356-017-8924-6}, url = {http://link.springer.com/10.1007/s11356-017-8924-6}, author = {Charlotte R. Dromard and Gu{\'e}n{\'e}, Mathilde and Bouchon-Navaro, Yolande and Lemoine, Soazig and Cordonnier, S{\'e}bastien and Bouchon, Claude} } @article {5779, title = {Copper induces expression and methylation changes of early development genes in Crassostrea gigas embryos}, journal = {Aquat Toxicol}, volume = {196}, year = {2018}, pages = {70-78}, keywords = {Oyster Embryotoxicity Copper Gene expression DNA methylation}, doi = {doi: 10.1016/j.aquatox.2018.01.001}, url = {https://www.sciencedirect.com/science/article/pii/S0166445X18300018?via\%3Dihub}, author = {Sussarellu, Rossana and Lebreton Morgane and Rouxel Julien and Akcha Farida and Guillaume Rivi{\`e}re} } @article {5440, title = {Crustacean cardioactive peptides: Expression, localization, structure, and a possible involvement in regulation of egg-laying in the cuttlefish Sepia officinalis.}, journal = {Gen. Comp. Endocrinol.}, volume = {1}, year = {2018}, pages = {67-79}, abstract = {

The cuttlefish (Sepia officinalis) is a cephalopod mollusk distributed on the western European coast, in the West African Ocean and in the Mediterranean Sea. On the Normandy coast (France), cuttlefish is a target species of professional fishermen, so its reproduction strategy is of particular interest in the context of stock management. Egg-laying, which is coastal, is controlled by several types of regulators among which neuropeptides. The cuttlefish neuropeptidome was recently identified by\ Zatylny-Gaudin\ et al. (2016). Among the 38 neuropeptide families identified, some were significantly overexpressed in egg-laying females as compared to mature males. This study is focused on crustacean cardioactive peptides (CCAPs), a highly expressed neuropeptide family strongly suspected of being involved in the control of egg-laying. We investigated the functional and structural characterization and tissue mapping of CCAPs, as well as the expression patterns of their receptors. CCAPs appeared to be involved in oocyte transport through the oviduct and in mechanical secretion of capsular products. Immunocytochemistry revealed that the neuropeptides were localized throughout the central nervous system (CNS) and in the nerve endings of the glands involved in egg-capsule synthesis and secretion, i.e. the oviduct gland and the main nidamental glands. The CCAP receptor was expressed in these glands and in the subesophageal mass of the CNS. Multiple sequence alignments revealed a high level of conservation of CCAP protein precursors in Sepia officinalis and Loligo pealei, two cephalopod decapods. Primary sequences of CCAPs from the two species were fully conserved, and cryptic peptides detected in the nerve endings were also partially conserved, suggesting biological activity that remains unknown for the time being.

}, doi = {10.1016/j.ygcen.2017.12.009}, author = {Endress, Maxime and C{\'e}line Zatylny-Gaudin and Corre, Erwan and Le Corguill{\'e}, Gildas and Benoist, Louis and Leprince, J{\'e}r{\^o}me and Lefranc, Benjamin and Bernay, Beno{\^\i}t and Leduc, Alexandre and Rangama, Jimmy and Anne-Gaelle Lafont and Bondon, Arnaud and Jo{\"e}l Henry} } @article {8113, title = {Cryptic frenulates are the dominant chemosymbiotrophic fauna at Arctic and high latitude Atlantic cold seeps}, journal = {PLOS ONE}, volume = {13}, year = {2018}, month = {Apr-12-2020}, pages = {e0209273}, doi = {10.1371/journal.pone.0209273}, url = {https://dx.plos.org/10.1371/journal.pone.0209273}, author = {Sen, Arunima and Duperron, S{\'e}bastien and Hourdez, St{\'e}phane and Piquet, B{\'e}r{\'e}nice and L{\'e}ger, Nelly and Gebruk, Andrey and Le Port, Anne-Sophie and Svenning, Mette Marianne and Andersen, Ann C.}, editor = {Kiel, Steffen} } @article {5315, title = {Cultured eastern oysters (Crassostrea virginica): retention and assimilation of picophytoplankton using a multi-biomarker approach}, journal = {Aquatic Living Resources}, volume = {30}, year = {2018}, month = {08/2018}, type = {Article}, abstract = {

{In this study, we investigated the food sources of eastern oysters Crassostrea virginica cultivated in Atlantic Canada. Stable isotopes (C-13 and N-15) and fatty acid biomarkers were used to identify these sources under in situ conditions for suspended (similar to 0.5 m below surface) and bottom(similar to 2 m) culture stocks. It was found that particulate organic matter represented the main food source, with major contributions from live phytoplankton. Higher lipid contents were detected in the digestive glands of suspended oysters compared to bottom oysters (p \< 0.05). Bottom oysters did not show significant preference for detrital or bacterial organic matter. Near-surface waters contained an elevated picophytoplankton biomass (PPP, 0.2-2 mu m, 1.93 +/- 0.16mg l(-1), mean +/- SEM) compared to nanophytoplankton biomass (NPP, \> 2 mu m, 1.05 +/- 0.15 mu g l(-1), mean +/- SEM). To determine whether the small size PPP was captured and assimilated by C. virginica, feeding trials were conducted in the laboratory using three PPP/NPP diets (20\%, 50\%, and 80\% PPP), consisting of isotopically-labelled (delta C-13) PPP cells (Nannochloropsis oculata) and non-labelled NPP cells (Tisochrysis lutea). An isotopically-labelled fatty acids analysis indicated PPP assimilation in various tissues (digestive gland, gills, mantle, and abductor muscle), including from oysters fed the reduced (20\%) PPP diet. Isotopic enrichment (C-13) in the FA 22:2 (non-methylene-interrupted or NMI) showed that precursors of NMIs utilized PPP carbon in its biosynthesis process. In conclusion, C. virginica assimilated primarily particulate organic matter (POM), including PPP, which dominated the phytoplankton community in near surface waters. C. virginica can exploit PPP carbon during fatty acid production and further biosynthesis.}

}, keywords = {Aquaculture, fatty acids, Picophytoplankton, Shellfish}, Stable isotopes, {Crassostrea virginica}, issn = {{0990-7440}}, doi = {{10.1051/alr/2017031}}, author = {R{\'e}mi Sonier and R{\'e}jean Tremblay and Fr{\'e}d{\'e}ric Olivier and Tarik Meziane and Comeau, Luc Andre} } @article {5907, title = {Checklist of the marine fishes from metropolitan {France}}, journal = {Cybium}, year = {2017}, doi = {10.26028/cybium/2017-414-006}, url = {http://sfi-cybium.fr/fr/checklist-marine-fishes-metropolitan-france}, author = {Philippe B{\'e}arez and Patrice Pruvost and Eric Feunteun and S.P. Igl{\'e}sias and Patrice Francour and Causse, Romain and De Mazieres J. and Tercerie, S and Bailly, Nicolas} } @article {4931, title = {Comparative Study of Chemosensory Organs of Shrimp From Hydrothermal Vent and Coastal Environments}, journal = {Chemical Senses}, volume = {doi:10.1093/chemse/bjx007}, year = {2017}, pages = {1-13}, abstract = {

The detection of chemical signals is involved in a variety of crustacean behaviors, such as social
interactions, search and evaluation of food and navigation in the environment. At hydrothermal
vents, endemic shrimp may use the chemical signature of vent fluids to locate active edifices,
however little is known on their sensory perception in these remote deep-sea habitats. Here,
we present the first comparative description of the sensilla on the antennules and antennae
of 4 hydrothermal vent shrimp (Rimicaris exoculata, Mirocaris fortunata, Chorocaris chacei,
and Alvinocaris markensis) and of a closely related coastal shrimp (Palaemon elegans). These
observations revealed no specific adaptation regarding the size or number of aesthetascs
(specialized unimodal olfactory sensilla) between hydrothermal and coastal species. We also
identified partial sequences of the ionotropic receptor IR25a, a co-receptor putatively involved in
olfaction, in 3 coastal and 4 hydrothermal shrimp species, and showed that it is mainly expressed
in the lateral flagella of the antennules that bear the unimodal chemosensilla aesthetascs.

}, keywords = {aesthetascs, decapod, hydrothermal shrimp, IR25a, olfaction}, author = {Magali Zbinden and Berthod, C and Montagn{\'e}, N and Machon, J and L{\'e}ger, N and Chertemps, T and Nicolas Rabet and Bruce Shillito and Juliette Ravaux} } @article {5222, title = {Conservation of Three-Dimensional Helix-Loop-Helix Structure through the Vertebrate Lineage Reopens the Cold Case of Gonadotropin-Releasing Hormone-Associated Peptide}, journal = {Frontiers in Endocrinology}, volume = {8}, year = {2017}, pages = {207}, abstract = {

GnRH associated peptide (GAP) is the C-terminal portion of the GnRH preprohormone. Although it was reported in mammals that GAP may act as a prolactin-inhibiting factor and can be co-secreted with GnRH into the hypophyseal portal blood, GAP has been practically out of the research circuit for about 20 years. Comparative studies highlighted the low conservation of GAP primary amino acid sequences among vertebrates, contributing to consider that this peptide only participates in the folding or carrying process of GnRH. Considering that the tridimensional (3D) structure of a protein may define its function, the aim of this study was to evaluate if GAP sequences and 3D structures are conserved in the vertebrate lineage. GAP sequences from various vertebrates were retrieved from databases. Analysis of primary amino acid sequence identity and similarity, molecular phylogeny, and prediction of 3D structures were performed. Amino acid sequence comparison and phylogeny analyses confirmed the large variation of GAP sequences throughout vertebrate radiation. In contrast, prediction of the 3D structure revealed a striking conservation of the 3D structure of GAP1 (GAP associated with the hypophysiotropic type 1 GnRH), despite low amino acid sequence conservation. This GAP1 peptide presented a typical helix-loop-helix (HLH) structure in all the vertebrate species analyzed. This HLH structure could also be predicted for GAP2 in some but not all vertebrate species, and in none of the GAP3 analyzed. These results allowed us to infer that selective pressures have maintained GAP1 HLH structure throughout the vertebrate lineage. The conservation of the HLH motif, known to confer biological activity to various proteins, suggests that GAP1 peptides may exert some hypophysiotropic biological functions across vertebrate radiation.

}, issn = {1664-2392}, doi = {10.3389/fendo.2017.00207}, url = {https://www.frontiersin.org/article/10.3389/fendo.2017.00207}, author = {P{\'e}rez Sirkin, Daniela I. and Anne-Gaelle Lafont and Kamech, Nedia and Somoza, Gustavo M. and Vissio, Paula G. and Sylvie Dufour} } @article {8152, title = {Contamination and depuration of Paralytic Shellfish Poisoning by Acanthocardia tuberculata cockles and Callista chione clams in Moroccan waters}, journal = {Journal of Materials and Environmental Sciences}, volume = {8}, year = {2017}, pages = {4634-4641}, abstract = {This study of\ Gymnodinium catenatum\ was conducted across two sampling stations; M{\textquoteright}diq bay and Oued Laou estuary during the period from July 2007 to May 2009.\ Gymnodinium catenatum\ blooms occurred after a rainfall event in autumn and early winter. Statically analyses showed a positive correlation with rainfall. During January 2008, the\ G. catenatum\ bloom resulted in contamination of tuberculate cockles and sweet clam by Paralytic Shellfish Poisoning (PSP) toxins. In the Oued Laou estuary, the levels of these toxins in shellfish went beyond the normative threshold for consumption of shellfish, (80\ μg SXTeq. /100g of meat) and reached (710 {\textpm} 82.07) and (198 {\textpm} 6.56)\ μg SXTeq. /100g of meat in cockles and sweet clam respectively. In M{\textquoteright}diq bay, concentrations of PSP toxins in the meat of these two shellfish were lower (256.57 {\textpm} 12.22\ μg SXTeq. /100g and 80.66 {\textpm} 8.14\ μg SXTeq. /100g of meat in tuberculate cockles and sweet clam respectively. An experimental test of depuration of tuberculate cockles and sweet clam contaminated by the PSP toxins was conducted in laboratory conditions in the first week of January 2008. The results showed partial and progressive elimination of PSP toxins in two shellfish species over time. In the tuberculate cockle, the elimination of PSP appears to be slower compared with the sweet clam; it took 120 days to reach levels of 80\ μg SXTeq. /100g of meat, on the other hand only 3 days were needed to reach this safe concentration in the sweet clam.}, author = {B. Rijal Leblad and H. Nhhala and M. Daoudi and M. Marhraoui and M. K. Ouelad Abdellah and Beno{\^\i}t V{\'e}ron and H. Er-Raioui} } @article {6894, title = {Cross-linking plankton indicators to better define GES of pelagic habitats - EcApRHA Deliverable WP1.4}, year = {2017}, abstract = {The multimetric approach is a methodological tool which can be used to study a range of systems, including GES assessment of marine waters. Three indicators (PH1, PH2 and PH3) are currently being developed in the frame of the OSPAR convention for the pelagic habitat component. The three PH indicators provide information on different and complementary aspects of the plankton community that, only when considered altogether, provide a holistic vision of the ecosystem which is central to GES assessment. The present document aims at combining their information for the first time, following a multimetric approach. For this purpose, it was decided that the Plymouth Marine Laboratory L4 station would be the focus of this deliverable for the period 2000-2014.

Different results were obtained from PH1, PH2 and PH3 regarding dates characterized by atypical plankton community structures, stressing their complementarity. However, similar results were also found for some sampling dates, suggesting that the complementary information conveyed by the three PH indicators shows potential for generating a higher-level indicator.

This work has also evidenced a number of gaps and issues in the integration of the three PH indicators that we address with guidelines. In particular, efforts should be devoted to overcome technical difficulties in the integration the PH3 indicators, especially regarding differences in temporal resolution. Future development of the indicators could involve complementary techniques to classical methods to overcome taxonomic constraints. In the frame of this project, the access to data in certain format was identified also found problematic. Creating a central database of pre-formatted data managed by a group of experts could also benefit the regional calibration of the indicators for areas where appropriate data are available. Establishing a clear and easily accessible report which details all the monitoring guidelines concerning the metrics used for the OSPAR PH indicators could also be beneficial for homogenising the monitoring and inter-comparability of data among contracting parties in the goal of regional marine management.}, author = {Budria, Alexandre and Anais Aubert and Rombouts, Isabelle and Ostle, Clare and Angus Atkinson and Widdicombe, Claire and Goberville, Eric and Luis Felipe Artigas and Johns, David and Padegimas, Bernardas and Corcoran, Emily and McQuatters-Gollop, Abigail} } @article {4751, title = {{Cross-taxon congruence in the rarity of subtidal rocky marine assemblages : No taxonomic shortcut for conservation monitoring}}, journal = {Ecological Indicators}, volume = {77}, year = {2017}, pages = {239{\textendash}249}, abstract = {The implementation of protection strategies such as the European Marine Strategy Framework Directive (2008/56/EC) is impeded for subtidal rock bottom habitats because of high sampling costs due to a very wide taxonomic diversity, and a lack of suitable evaluation tools to estimate their conservation importance. In this study, we seek to provide an evaluation procedure by (1) investigating the distribution of rarity among subtidal rock bottom phyla; (2) searching for potential surrogate phyla with a cross-taxon congruence approach based on their rarity; (3) proposing an appropriate multi-phyla indicator to evaluate the importance of subtidal rocky habitats for conservation. We analysed the distribution of 548 species belonging to 8 phyla sampled in 137 assemblages in subtidal rocky areas located around Brittany, Western France. We applied the Index of Relative Rarity, a flexible method which fits rarity weights to species depending on their respective phyla. We found only weak congruence in rarity patterns among phyla, which prevented any attempt to identify surrogate phyla. This finding has important implications for the conservation of subtidal rocky habitats as it means that there is no shortcut to monitor their rarity: working on a subset of phyla would imply a biased evaluation of biodiversity. Consequently, we propose a multi-phyla Index of Relative Rarity combining all phyla which allowed us to successfully describe rarity patterns across all sampled sites.}, keywords = {occurrence-based rarity, subtidal conservation}, issn = {1470-160X}, doi = {10.1016/j.ecolind.2017.02.012}, url = {http://dx.doi.org/10.1016/j.ecolind.2017.02.012}, author = {Leroy, Boris and R{\'e}gis Gallon and Eric Feunteun and Robuchon, Marine and Fr{\'e}d{\'e}ric Ysnel} } @article {5210, title = {Cultured eastern oysters (Crassostrea virginica): retention and assimilation of picophytoplankton using a multi-biomarker approach}, journal = {Aquatic Living Ressources}, volume = {30}, year = {2017}, month = {08/2017}, pages = {1-13}, doi = {doi.org/10.1051/alr/2017031}, url = {https://www.alr-journal.org/articles/alr/abs/2017/01/alr170056/alr170056.html}, author = {R{\'e}mi Sonier and R{\'e}jean Tremblay and Fr{\'e}d{\'e}ric Olivier and Tarik Meziane and Comeau, L. A.} } @article {4246, title = {Calcium Deposits in the Crayfish, Cherax quadricarinatus: Microstructure Versus Elemental Distribution}, journal = {Microscopy and Microanalysis}, volume = {22}, year = {2016}, pages = {22-38}, type = {Journal Article}, author = {Gilles Luquet and Yannicke Dauphin and Aline Percot and Murielle Salom{\'e} and Andreas Ziegler and Maria S. Fernandez and Jos{\'e} L. Arias} } @article {4041, title = {The Channel ecosystem, a cross-roads of anthropogenic pressures and scientific studies: Lessons learned from the European \{INTERREG\} \{IV\} projects (2009{\textendash}2015)}, journal = {Marine Policy}, volume = {63}, year = {2016}, month = {11/2015}, pages = {158 - 165}, author = {L Evariste and Pascal Claquin and Jean-Paul Robin and Arnaud Auber and Abigail McQuatters-Gollop and Jean-Claude Dauvin} } @article {4377, title = {Characterisation of the mantle transcriptome and biomineralisation genes in the blunt-gaper clam, Mya truncata}, journal = {Marine Genomics}, volume = {27}, year = {2016}, pages = {47 - 55}, abstract = {

Abstract Members of the Myidae family are ecologically and economically important, but there is currently very little molecular data on these species. The present study sequenced and assembled the mantle transcriptome of Mya truncata from the North West coast of Scotland and identified candidate biomineralisation genes. RNA-Seq reads were assembled to create 20,106 contigs in a de novo transciptome, 18.81\% of which were assigned putative functions using \{BLAST\} sequence similarity searching (cuttoff E-value 1E {\quotesinglbase}{\`a}{\'\i} 10). The most highly expressed genes were compared to the Antarctic clam (Laternula elliptica) and showed that many of the dominant biological functions (muscle contraction, energy production, biomineralisation) in the mantle were conserved. There were however, differences in the constitutive expression of heat shock proteins, which were possibly due to the M. truncata sampling location being at a relatively low latitude, and hence relatively warm, in terms of the global distribution of the species. Phylogenetic analyses of the Tyrosinase proteins from M. truncata showed a gene expansion which was absent in L. elliptica. The tissue distribution expression patterns of putative biomineralisation genes were investigated using quantitative PCR, all genes showed a mantle specific expression pattern supporting their hypothesised role in shell secretion. The present study provides some preliminary insights into how clams from different environments {\quotesinglbase}{\"A}{\`\i} temperate versus polar {\quotesinglbase}{\"A}{\`\i} build their shells. In addition, the transcriptome data provides a valuable resource for future comparative studies investigating biomineralisation.

}, keywords = {shell}, issn = {1874-7787}, doi = {http://dx.doi.org/10.1016/j.margen.2016.01.003}, url = {http://www.sciencedirect.com/science/article/pii/S1874778716300034}, author = {Victoria A. Sleight and Michael A.S. Thorne and Lloyd S. Peck and Arivalagan, Jaison and Berland, Sophie and Marie, Arul and Melody S. Clark} } @article {5814, title = {{Climate change and the ash dieback crisis}}, journal = {Scientific Reports}, volume = {6}, year = {2016}, abstract = {

{\textcopyright} The Author(s) 2016. Beyond the direct influence of climate change on species distribution and phenology, indirect effects may also arise from perturbations in species interactions. Infectious diseases are strong biotic forces that can precipitate population declines and lead to biodiversity loss. It has been shown in forest ecosystems worldwide that at least 10{\%} of trees are vulnerable to extinction and pathogens are increasingly implicated. In Europe, the emerging ash dieback disease caused by the fungus Hymenoscyphus fraxineus, commonly called Chalara fraxinea, is causing a severe mortality of common ash trees (Fraxinus excelsior); this is raising concerns for the persistence of this widespread tree, which is both a key component of forest ecosystems and economically important for timber production. Here, we show how the pathogen and climate change may interact to affect the future spatial distribution of the common ash. Using two presence-only models, seven General Circulation Models and four emission scenarios, we show that climate change, by affecting the host and the pathogen separately, may uncouple their spatial distribution to create a mismatch in species interaction and so a lowering of disease transmission. Consequently, as climate change expands the ranges of both species polewards it may alleviate the ash dieback crisis in southern and occidental regions at the same time.

}, issn = {20452322}, doi = {10.1038/srep35303}, author = {Goberville, Eric and Nina-Coralie Hautek{\`e}ete and Richard R Kirby and Yves Piquot and Christophe Luczak and Gr{\'e}gory Beaugrand} } @article {4265, title = {Coastal evolution and sedimentary mobility of Br{\o}gger Peninsula, northwest Spitsbergen}, journal = {Polar Biology}, year = {2016}, month = {03/2016}, pages = {1-10}, abstract = {

Since the end of the Little Ice Age (LIA), Svalbard glaciers have undergone a net retreat in response to changing meteorological conditions. Located between 76{\textdegree}N and 80{\textdegree}N, western Spitsbergen has seen a climatic transition from a glacial to a paraglacial system. On the northern shore of the Br{\o}gger Peninsula (northwest Spitsbergen), the average temperature increased by 3\ {\textdegree}C between 1965 and 2015, and cold-based valley glaciers have retreated more than 1\ km from their LIA limits. This rapid deglaciation has exposed large areas of glacigenic sediments being easily reworked by runoff. This has led to the formation of extensive glacier-river delta systems and coastal progradation. Post-LIA coastal progradation and formation of new landforms in Kongsfjorden have been controlled predominantly by substantial availability of glacial sediment. A combination of aerial photographic and field data has been employed to estimate the post-LIA evolution of coastal sandur deltas and their submarine parts (named here {\textquotedblleft}prodeltas{\textquotedblright}). The data set reveals that delta shoreline advance could have reached around 5\ m/year. between 1966 and 1990 for the most energetic delta of Austre Lovenbreen, and around 4\ m/year between 2011 and 2014 for the most energetic delta of Midtre Lovenbreen. The prodeltas registered a net growth from 2009 to 2012: the biggest, located in the prolongation of deltas of Austre Lovenbreen, measured 1033\ m in length in 2009 and 1180\ m in length in 2012. This substantial amount of sediment supplied in the fjord has an impact on the fjord ecology, especially on the benthic ecosystem.

}, keywords = {High Arctic, Paraglacial, Sedimentary flux, Submarine and aerial coastal evolution, Svalbard}, doi = {10.1007/s00300-016-1930-1}, author = {Marine Bourriquen and Agn{\`e}s Baltzer and Denis Mercier and J{\'e}r{\^o}me Fournier and Laurent Perez and Sylvain Haquin and Eric Bernard and Maria Ansine Jensen} } @article {4494, title = {Coleoid cephalopod color patterns: Adult skin structures and their emergence during development in sepia officinalis}, journal = {Vie et Milieu}, volume = {66}, year = {2016}, month = {May 2016}, pages = {43-55}, abstract = {

The skin of coleo{\"\i}d cephalopods is a complex tissue that allows the rapid display of numerous changing or static patterns for communication and camouflage. Chromatophores, iridophores, and leucophores are responsible for these properties. Chromatophores are pigmentary neuromuscular organs, directly controlled by the brain. Iridophores are iridescent cells that use platelets of proteins that are arranged into repetitive structures (iridosomes) to produce iridescence; and leucophores are perfect reflectors. The same family of protein (reflectins), initially characterized in iridophores, have been detected (at different levels) in the three structures. Here we review the current knowledge of adult skin and its nervous control and describe the establishment of chromatophores and iridophores during embryonic development in Sepia officinalis.

}, keywords = {Cephalopods, Chromatophores, color pattern, Development, iridophores}, author = {Aude Andouche and Yann Bassaglia} } @conference {4385, title = {Comparison of MODIS and LANDSAT-8 retrievals of chlorophyll-a and water temperature over lake Titicaca}, booktitle = {IEEE International Symposium}, year = {2016}, publisher = {Geoscience and Remote Sensing (IGARSS)}, organization = {Geoscience and Remote Sensing (IGARSS)}, address = {10-15 july 2016, Beijing, China}, author = {Ruiz-Verd{\'u}, A and Jim{\'e}nez, JC and Lazzaro, Xavier and Tango, C and Delegido, J and Pereira, M and Sobrino, JA and Moreno, J} } @article {4509, title = {A comparison of techniques for studying oogenesis in the European eel Anguilla anguilla.}, journal = {J Fish Biol}, year = {2016}, month = {2016 Aug 8}, abstract = {

A multi-technique approach was used to study the changes occurring in European eel Anguilla anguilla ovaries during hormonally-induced vitellogenesis. Aside from classic techniques used to monitor the vitellogenic process, such as ovary histology, fat content analysis, sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and vitellogenin enzyme linked immunosorbent assay (ELISA), a new technique, Fourier-transform infrared (FT-IR) microspectroscopy, was used to analyse A. anguilla ovaries. The results from the different techniques provided different ways of approaching the same process. Although it is considered a time consuming approach, of all the employed techniques, histology provided the most direct evidences about vitellogenesis. SDS-PAGE and ELISA were also useful for studying vitellogenesis, whereas fat analysis cannot be used for this purpose. The FT-IR analysis provided a representative IR spectrum for each ovarian stage (previtellogenic stage, early vitellogenic stage, mid-vitellogenic stage and late vitellogenic stage), demonstrating that it is a valid method able to illustrate the distribution of the oocytes within the ovary slices. The chemical maps obtained confirmed changes in lipid concentrations and revealed their distribution within the oocytes at different maturational stages. When the results and the accuracy of the FT-IR analysis were compared with those of the traditional techniques commonly used to establish the vitellogenic stage, it became evident that FT-IR is a useful and reliable tool, with many advantages, including the fact that it requires little biological material, the costs involved are low, analysis times are short and last but not least, the fact that it offers the possibility of simultaneously analysing various biocomponents of the same oocyte.

}, issn = {1095-8649}, doi = {10.1111/jfb.13103}, author = {Mazzeo, I and Giorgini, E and Gioacchini, G and Maradonna, F and V{\'\i}lchez, M C and Sylvie Baloche and Sylvie Dufour and P{\'e}rez, L and Carnevali, O and Asturiano, J F} } @article {6815, title = {Calibration of seawater temperature and δ18Oseawater signals in Tridacna maxima{\textquoteright}s δ18Oshell record based on in situ data}, journal = {Coral Reefs}, volume = {34}, year = {2015}, month = {Jan-06-2015}, pages = {437 - 450}, issn = {0722-4028}, doi = {10.1007/s00338-014-1245-z}, url = {http://link.springer.com/10.1007/s00338-014-1245-z}, author = {Duprey, N. and Claire E. Lazareth and Dupouy, C. and Butscher, J. and Farman, R. and Maes, C. and Cabioch, G.} } @article {6878, title = {Characterising multi-level effects of acute pressure exposure on a shallow-water invertebrate: insights into the kinetics and hierarchy of the stress response}, journal = {Journal of Experimental Biology}, volume = {218}, year = {2015}, month = {Jan-08-2015}, pages = {2594 - 2602}, issn = {0022-0949}, doi = {10.1242/jeb.125914}, url = {http://jeb.biologists.org/cgi/doi/10.1242/jeb.125914}, author = {Morris, J. P. and Thatje, S. and Juliette Ravaux and Bruce Shillito and Hauton, C.} } @proceedings {3549, title = {Chemical interaction between epilitic microphytobenthic biofilm and larval development of the sea urchin Paracentrotus lividus}, volume = {1}, year = {2015}, month = {01/2015}, pages = {239-247}, edition = {M. Boutouil \& S. Leboulanger}, address = {ESITC Caen}, isbn = {978-2-95517664-0-5}, author = {Francis Orvain and Anne-Sophie Martinez and Desoche, E and Pascal Claquin} } @inbook {4080, title = {Cnidaires}, booktitle = {La fonction venimeuse}, year = {2015}, pages = {59-91}, publisher = {Lavoisier Tec \& Doc}, organization = {Lavoisier Tec \& Doc}, edition = {Sous la direction de C. Rollard, J.-P. Chippaux \& M. Goyffon}, chapter = {5}, address = {Paris}, author = {Mireille M.M. Guillaume} } @proceedings {3547, title = {Colonisation {\`a} court terme par le benthos sur un {\'e}co-r{\'e}cif artificiel}, volume = {1}, year = {2015}, month = {01/2015}, pages = {119-126}, edition = {M. Boutouil \& S. Leboulanger}, address = {ESITC Caen}, isbn = {978-2-95517664-0-5}, author = {Foveau, Aur{\'e}lie and Jean-Claude Dauvin and Anne-Marie Rusig and Isabelle Mussio and Pascal Claquin} } @article {3700, title = {Colonization of plant substrates at hydrothermal vents and cold seeps in the northeast Atlantic and Mediterranean and occurrence of symbiont-related bacteria.}, journal = {Front Microbiol}, volume = {6}, year = {2015}, month = {2015}, pages = {162}, abstract = {

Reducing conditions with elevated sulfide and methane concentrations in ecosystems such as hydrothermal vents, cold seeps or organic falls, are suitable for chemosynthetic primary production. Understanding processes driving bacterial diversity, colonization and dispersal is of prime importance for deep-sea microbial ecology. This study provides a detailed characterization of bacterial assemblages colonizing plant-derived substrates using a standardized approach over a geographic area spanning the North-East Atlantic and Mediterranean. Wood and alfalfa substrates in colonization devices were deployed for different periods at 8 deep-sea chemosynthesis-based sites in four distinct geographic areas. Pyrosequencing of a fragment of the 16S rRNA-encoding gene was used to describe bacterial communities. Colonization occurred within the first 14 days. The diversity was higher in samples deployed for more than 289 days. After 289 days, no relation was observed between community richness and deployment duration, suggesting that diversity may have reached saturation sometime in between. Communities in long-term deployments were different, and their composition was mainly influenced by the geographical location where devices were deployed. Numerous sequences related to horizontally-transmitted chemosynthetic symbionts of metazoans were identified. Their potential status as free-living forms of these symbionts was evaluated based on sequence similarity with demonstrated symbionts. Results suggest that some free-living forms of metazoan symbionts or their close relatives, such as Epsilonproteobacteria associated with the shrimp Rimicaris exoculata, are efficient colonizers of plant substrates at vents and seeps.

}, issn = {1664-302X}, doi = {10.3389/fmicb.2015.00162}, author = {Szafranski, Kamil M and Deschamps, Philippe and Cunha, Marina R and Sylvie M Gaudron and S{\'e}bastien Duperron} } @article {4823, title = {Comparative environmental performance of artisanal and commercial feed use in Peruvian freshwater aquaculture}, journal = {Aquaculture}, volume = {435}, year = {2015}, pages = {52-66}, type = {Journal Article}, issn = {0044-8486}, doi = {http://dx.doi.org/10.1016/j.aquaculture.2014.08.001}, url = {http://www.sciencedirect.com/science/article/pii/S0044848614003925}, author = {Avad{\'\i}, Angel and Pelletier, Nathan and Aubin, Jo{\"e}l and Ralite, St{\'e}phane and Jesus Nu{\~n}ez-Rodriguez and Fr{\'e}on, Pierre} } @article {4358, title = {Comparative phylogeography of Javanese and Balinese freshwater fishes: DNA barcodes shed light on Quaternary range expansion dynamic in a biodiversity hotspot.}, journal = {Genome}, volume = {58}, year = {2015}, pages = {230}, author = {Hutama, A. and Darhuddin, H. and Fr{\'e}d{\'e}ric Busson and Sauri, S and Hanner, R and Philippe Keith and Hadiaty, Renny and Hubert, N} } @article {4233, title = {The Comparison of δ13C Values of a Deposit- and a Suspension-Feeder Bio-Indicates Benthic vs. Pelagic Couplings and Trophic Status in Contrasted Coastal Ecosystems}, journal = {Estuaries and Coasts}, year = {2015}, month = {08/2015}, doi = {10.1007/s12237-015-0020-x}, author = {Sylvie M Gaudron and Karine Granger{\'e} and S{\'e}bastien Lefebvre} } @article {4240, title = {Compte rendu du s{\'e}minaire du groupe de travail {\guillemotleft} mangroves {\guillemotright}. Paris, MNHN, 28-30 septembre 2015. Convention ONEMA/MNHN 2015. 12 pages.}, year = {2015}, keywords = {Bioindication, DCE, DOM, Mangrove}, author = {Guillaume Dirberg} } @article {3559, title = {Concentrations and Fractionation of Carbon, Iron, Sulfur, Nitrogen and Phosphorus in Mangrove Sediments Along an Intertidal Gradient (Semi-Arid Climate, New Caledonia)}, journal = {J. Mar. Sci. Eng.}, year = {2015}, month = {02/2015}, pages = {52-57}, type = {OPEN ACCESS}, abstract = {

In mangrove ecosystems, strong reciprocal interactions exist between plant and substrate. Under semi-arid climate, Rhizophora spp. are usually predominant, colonizing the seashore, and Avicennia marina develops at the edge of salt-flats, which is the highest zone in the intertidal range. Along this zonation, distribution and speciation of C, Fe, S, N, and P in sediments and pore-waters were investigated. From the land-side to the sea-side of the mangrove, sediments were characterized by I/ increase in: (i) water content; (ii) TOC; (iii) mangrove-derived OM; II/ and decrease in: (i) salinity; (ii) redox; (iii) pH; (iv) solid Fe and solid P. Beneath Avicennia and Rhizophora, TS accumulated at depth, probably as a result of reduction of iron oxides and sulfate. The loss of total Fe observed towards the sea-side may be related to sulfur oxidation and to more intense tidal flushing of dissolved components. Except the organic forms, dissolved N and P concentrations were very low beneath Avicennia and Rhizophora stands, probably as a result of their uptake by the root systems. However, in the unvegetated salt-flat, NH4+ can accumulate in organic rich and anoxic layers. This study shows: (i) the evolution of mangrove sediment biogeochemistry along the intertidal zone as a result of the different duration of tidal inundation and organic enrichment; and (ii) the strong links between the distribution and speciation of the different elements.

}, keywords = {biogeochemistry, Mangrove, New Caledonia, zonation}, issn = {2077-1312}, author = {Jonhatan Deborde and Cyril Marchand and Nathalie Molnar and Luc Della-Patrona and Tarik Meziane} } @article {3374, title = {Cellular effects of bacterial N-3-Oxo-dodecanoyl-L-Homoserine lactone on the sponge Suberites domuncula (Olivi, 1792): insights into an intimate inter-kingdom dialogue.}, journal = {PLoS One}, volume = {9}, year = {2014}, month = {2014}, pages = {e97662}, abstract = {

Sponges and bacteria have lived together in complex consortia for 700 million years. As filter feeders, sponges prey on bacteria. Nevertheless, some bacteria are associated with sponges in symbiotic relationships. To enable this association, sponges and bacteria are likely to have developed molecular communication systems. These may include molecules such as N-acyl-L-homoserine lactones, produced by Gram-negative bacteria also within sponges. In this study, we examined the role of N-3-oxododecanoyl-L-homoserine lactone (3-oxo-C12-HSL) on the expression of immune and apoptotic genes of the host sponge Suberites domuncula. This molecule seemed to inhibit the sponge innate immune system through a decrease of the expression of genes coding for proteins sensing the bacterial membrane: a Toll-Like Receptor and a Toll-like Receptor Associated Factor 6 and for an anti-bacterial perforin-like molecule. The expression of the pro-apoptotic caspase-like 3/7 gene decreased as well, whereas the level of mRNA of anti-apoptotic genes Bcl-2 Homolog Proteins did not change. Then, we demonstrated the differential expression of proteins in presence of this 3-oxo-C12-HSL using 3D sponge cell cultures. Proteins involved in the first steps of the endocytosis process were highlighted using the 2D electrophoresis protein separation and the MALDI-TOF/TOF protein characterization: α and β subunits of the lysosomal ATPase, a cognin, cofilins-related proteins and cytoskeleton proteins actin, α tubulin and α actinin. The genetic expression of some of these proteins was subsequently followed. We propose that the 3-oxo-C12-HSL may participate in the tolerance of the sponge apoptotic and immune systems towards the presence of bacteria. Besides, the sponge may sense the 3-oxo-C12-HSL as a molecular evidence of the bacterial presence and/or density in order to regulate the populations of symbiotic bacteria in the sponge. This study is the first report of a bacterial secreted molecule acting on sponge cells and regulating the symbiotic relationship.

}, issn = {1932-6203}, doi = {10.1371/journal.pone.0097662}, author = {Gard{\`e}res, Johan and Jo{\"e}l Henry and Bernay, Beno{\^\i}t and Ritter, Andr{\`e}s and C{\'e}line Zatylny-Gaudin and Wiens, Matthias and M{\"u}ller, Werner E G and Le Pennec, Ga{\"e}l} } @article {3391, title = {Cephalopod development: what we can learn from differences}, journal = {OA Biology}, volume = {2}, year = {2014}, pages = {6}, type = {Review}, abstract = {

Introduction
The molluscan neuro-muscular system shows extreme diversity. Cephalopods present an original body plan, a derived neuro-muscular complex and a development with drastic changes in the antero-posterior/dorso-ventral orientation. How it took place during evolution is an unresolved question that can be approached by the study of developmental genes. Studying the expression of conserved transcription factors (Pax and NK families, otx, apt) and morphogen (hedgehog) during development is a good test of the conservation of their functions. We underline here unexpected expression patterns during cephalopod development, and we aim to suggest that these patterns may be, at least partly, in relation to morphological novelties in this clade.
Conclusion
The expression patterns observed point out the diversity of molecular pathways recruited during evolution and the necessary carefulness regarding generalization of results obtained from a very small set of model organisms. Studying different species, with a large diversity of morphology, could help to have a better understanding of the variety of the genes roles and/or of the plasticity of networks.

}, url = {http://www.oapublishinglondon.com/oa-biology}, author = {Laure Bonnaud-Ponticelli and Yann Bassaglia} } @article {3264, title = {Cephalopods in neuroscience: regulations, research and the 3Rs.}, journal = {Invert Neurosci}, volume = {14}, year = {2014}, month = {2014 Mar}, pages = {13-36}, abstract = {

Cephalopods have been utilised in neuroscience research for more than 100\ years particularly because of their phenotypic plasticity, complex and centralised nervous system, tractability for studies of learning and cellular mechanisms of memory (e.g. long-term potentiation) and anatomical features facilitating physiological studies (e.g. squid giant axon and synapse). On 1 January 2013, research using any of the about 700 extant species of "live cephalopods" became regulated within the European Union by Directive 2010/63/EU on the "Protection of Animals used for Scientific Purposes", giving cephalopods the same EU legal protection as previously afforded only to vertebrates. The Directive has a number of implications, particularly for neuroscience research. These include: (1) projects will need justification, authorisation from local competent authorities, and be subject to review including a harm-benefit assessment and adherence to the 3Rs principles (Replacement, Refinement and Reduction). (2) To support project evaluation and compliance with the new EU law, guidelines specific to cephalopods will need to be developed, covering capture, transport, handling, housing, care, maintenance, health monitoring, humane anaesthesia, analgesia and euthanasia. (3) Objective criteria need to be developed to identify signs of pain, suffering, distress and lasting harm particularly in the context of their induction by an experimental procedure. Despite diversity of views existing on some of these topics, this paper reviews the above topics and describes the approaches being taken by the cephalopod research community (represented by the authorship) to produce "guidelines" and the potential contribution of neuroscience research to cephalopod welfare.

}, keywords = {3Rs, Animal welfare, Cephalopods, Directive2010/63/EU, Neuroscience}, issn = {1439-1104}, doi = {10.1007/s10158-013-0165-x}, author = {Fiorito, Graziano and Affuso, Andrea and Anderson, David B and Basil, Jennifer and Laure Bonnaud-Ponticelli and Botta, Giovanni and Cole, Alison and D{\textquoteright}Angelo, Livia and De Girolamo, Paolo and Dennison, Ngaire and Dickel, Ludovic and Di Cosmo, Anna and Di Cristo, Carlo and Gestal, Camino and Fonseca, Rute and Grasso, Frank and Kristiansen, Tore and Kuba, Michael and Maffucci, Fulvio and Manciocco, Arianna and Mark, Felix Christopher and Melillo, Daniela and Osorio, Daniel and Palumbo, Anna and Perkins, Kerry and Ponte, Giovanna and Raspa, Marcello and Shashar, Nadav and Smith, Jane and Smith, David and Sykes, Ant{\'o}nio and Villanueva, Roger and Tublitz, Nathan and Zullo, Letizia and Andrews, Paul} } @article {6885, title = {Cg-SoxE and Cg-β-catenin, two new potential actors of the sex-determining pathway in a hermaphrodite lophotrochozoan, the Pacific oyster Crassostrea gigas}, journal = {Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology}, volume = {167}, year = {2014}, pages = {68-76}, abstract = {Sex determination is poorly known in mollusks, lophotrochozoa and most hermaphrodites. In the oyster Crassostrea gigas, an irregular successive hermaphrodite, sex determination may occur at the end of a gametogenetic cycle to prepare the next cycle. To investigate further into these aspects we have focused on orthologs of SoxE and β-catenin, key players of the male and female gonadic differentiation respectively in mammals. Based on phylogenetic analyses, Cg-SoxE, the oyster{\textquoteright}s SoxE ortholog, is closely related to vertebrate SoxE genes while Cg-β-catenin, the oyster{\textquoteright}s β-catenin ortholog, is classified amongst lophotrochozoa. The mRNA expression measured by qPCR in the gonadic area during a gametogenetic cycle is maximal for Cg-SoxE when sex is indiscernible and for Cg-β-catenin in mature females. Both expressions are localized from early germ cells to spermatocytes and pre-vitellogenic oocytes, and potentially in somatic cells. Cg-β-catenin is also expressed in vitellogenic oocytes. These actors may be involved in early oyster gonadic differentiation, which includes sex determination. Our results enhance the understanding of sex determination in C. gigas and in mollusks and they provide additional knowledge in compared genomics of reproduction and in molecular phylogeny.}, keywords = {Gonadic differentiation, Oyster, Sex-determining pathways, Sox9, β-catenin}, doi = {10.1016/j.cbpa.2013.09.018}, url = {https://hal-normandie-univ.archives-ouvertes.fr/hal-02296496}, author = {Santerre, Christelle and Sourdaine, Pascal and Adeline, B{\'e}atrice and Anne-Sophie Martinez} } @inbook {5148, title = {Chapter 7. Biogeographic patterns of fish}, booktitle = {Biogeographic Atlas of the Southern Ocean}, year = {2014}, pages = {327{\textendash}362}, edition = {In: De Broyer C., Koubbi P., Griffiths H.J., Raymond B., Udekem d{\textquoteright}Acoz C. d{\textquoteright}, et al. (eds.)}, chapter = {7}, isbn = {978-0-948277-28-3}, author = {Guy Duhamel and Percy-Alexander Hulley and Causse, Romain and Koubbi, Philippe and Vacchi, Marino and Patrice Pruvost and Vigetta, Stephanie and Irisson, J.-O. and Mormede, Sophie and Belchier, Mark and others} } @article {3307, title = {Chapter Four : Transitions During Cephalopod Life History: The Role of Habitat, Environment, Functional Morphology and Behaviour}, year = {2014}, keywords = {Acquisition of behaviours, Adult, Cephalopod ontogeny, Cohort survival, Environmental variability, Habitat shifts, Juvenile, Life stages, Morphological changes, Paralarvae, Subadult}, author = {Jean-Paul Robin and Roberts, Michael and Zeidberg, Lou and Bloor, Isobel and Rodriguez, Almendra and Brice{\~n}o, Felipe and Downey, Nicola and Mascar{\'o}, Maite and Guerra, Angel and Hofmeister, Jennifer and Barcellos, Diogo D. and Louren{\c c}o, Silvia A.P. and Roper, Clyde F.E. and Moltschaniwskyj, Natalie A. and Green, Corey P. and Mather, Jennifer} } @article {3490, title = {Characterisation and expression of the biomineralising gene Lustrin A during shell formation of the European abalone Haliotis tuberculata}, journal = {Comparative Biochemistry and Physiology , Part B}, volume = {169}, year = {2014}, month = {2014}, pages = {1-8}, type = {Research article}, abstract = {

The molluscan shell is a remarkable product of a highly biomineralisation process, and is composed of calcium carbonate most commonly in the form of calcite or aragonite. The exceptional mechanical properties of this biomaterial are imparted by the embedded organic matrix which is secreted by the underlying mantle tissue. While many shell-matrix proteins have already been identified within adult molluscan shell, their presence and role in the early developmental stages of larval shell formation are not well understood. In the European abalone Haliotis tuberculata, the shell first forms in the early trochophore larva and develops into a mineralised protoconch in the veliger. Following metamorphosis, the juvenile shell rapidly changes as it becomes flattened and develops a more complex crystallographic profile including an external granular layer and an internal nacreous layer. Among the matrix proteins involved in abalone shell formation, Lustrin A is thought to participate in the formation of the nacreous layer. Here we have identified a partial cDNA coding for the Lustrin A gene in H. tuberculata and have analysed its spatial and temporal expression during abalone development. RT-PCR experiments indicate that Lustrin A is first expressed in juvenile (post-metamorphosis) stages, suggesting that Lustrin A is a component of the juvenile shell, but not of the larval shell. We also detected Lustrin A mRNAs in non-nacre forming cells at the distal-most edge of the juvenile mantle as well as in the nacre-forming region of the mantle. Lustrin A was also expressed in 7-day-old post-larvae, prior to the formation of nacre. These results suggest that Lustrin A plays multiple roles in the shell-forming process and further highlight the dynamic ontogenic nature of molluscan shell formation.

}, keywords = {biomineralisation, Haliotis tuberculata, larval development, Lustrin A, mollusc, organic matrix, shell}, author = {Gaume, B{\'e}atrice and Denis, Fran{\c c}oise and Van Wormhoudt, Alain and Huchette, Sylvain and Jackson, Daniel and Avignon, Sol{\`e}ne and St{\'e}phanie Auzoux-Bordenave} } @article {Bosseboeuf_etal2014, title = {{Characterization of spermatogonial markers in the mature testis of the dogfish (Scyliorhinus canicula L.)}}, journal = {Reproduction}, volume = {147}, number = {147}, year = {2014}, month = {01/2014}, pages = {125{\textendash}139}, author = {Bosseboeuf, A and Aude Gautier and Auvray, P and Mazan, S and Pascal Sourdaine} } @article {4223, title = {Colonisation of leaf litter by lotic macroinvertebrates in a headwater stream of the Phachi River (western Thailand)}, journal = {Fundamental and Applied Limnology}, volume = {184}, year = {2014}, month = {04}, pages = {109-124}, doi = {10.1127/1863-9135/2014/0596}, url = {http://dx.doi.org/10.1127/1863-9135/2014/0596}, author = {Frank David and Boonsoong, Boonsatien} } @article {Lassale_etal2013, title = {{Combining quantitative and qualitative models to identify functional groups for monitoring changes in the Bay of Biscay continental shelf exploited foodweb}}, journal = {ICES Journal of Marine Science}, volume = {71}, number = {1}, year = {2014}, pages = {105{\textendash}117}, abstract = {

To develop and implement ecosystem-based management, it is critical to monitor foodweb components or functional groups which are robust to uncertainty in ecosystem structure and functioning yet sensitive to changes. To select such functional groups for the Bay of Biscay continental shelf, both quantitative and qualitative foodweb models were developed. First, functional groups for which predictions of directions of change following an increase in primary productivity, prey or predators, or in fishing activities were identical across alternative qualitative model structures were identified. Second, the robustness to model type was assessed by comparing qualitative predictions with quantitative Ecopath model results. The demersal fish community was identified as a sensitive and robust indicator for monitoring foodweb ecological status in the Bay of Biscay. The present study also suggested the potential antagonistic effects of alternative management measures on small pelagic fish and highlighted the need for the joint management of all pressures.

}, keywords = {comparative studies, ecosystem management, foodweb, loop analysis, Northeast Atlantic continental shelf}, doi = {10.1093/icesjms/fst107}, author = {G{\'e}raldine Lassalle and Nelva Pasqual, J-S and Bo{\"e}t, P and Rochet, M J and Trenkel, V M and Nathalie Niquil} } @article {3428, title = {Comparison of the sensitivity of seven marine and freshwater bioassays as regards antidepressant toxicity assessment.}, journal = {Ecotoxicology}, volume = {23}, year = {2014}, month = {2014 Nov}, pages = {1744-54}, abstract = {

The hazards linked to pharmaceutical residues like antidepressants are currently a major concern of ecotoxicology because they may have adverse effects on non-target aquatic organisms. Our study assesses the ecotoxicity of three antidepressants (fluoxetine, sertraline and clomipramine) using a battery of marine and freshwater species representing different trophic levels, and compares the bioassay sensitivity levels. We selected the following bioassays: the algal growth inhibition test (Skeletonema marinoi and Pseudokirchneriella subcapitata), the microcrustacean immobilization test (Artemia salina and Daphnia magna), development and adult survival tests on Hydra attenuata, embryotoxicity and metamorphosis tests on Crassostrea gigas, and in vitro assays on primary cultures of Haliotis tuberculata hemocytes. The results showed high inter-species variability in EC50-values ranging from 43 to 15,600\ {\textmu}g/L for fluoxetine, from 67 to 4,400\ {\textmu}g/L for sertraline, and from 4.70\ {\textmu}g/L to more than 100,000\ {\textmu}g/L for clomipramine. Algae (S. marinoi and P. subcapitata) and the embryo-larval stages of the oyster C. gigas were the most sensitive taxa. This raises an issue due to their ecological and/or economic importance. The marine crustacean A. salina was the least sensitive species. This difference in sensitivity between bioassays highlights the importance of using a test battery.

}, issn = {1573-3017}, doi = {10.1007/s10646-014-1339-y}, author = {Minguez, Laetitia and Di Poi, C and Farcy, E and Ballandonne, C{\'e}line and Benchouala, Amira and Bojic, Cl{\'e}ment and Cossu-Leguille, Carole and Katherine Costil and Antoine Serpentini and Jean-Marc Lebel and Halm-Lemeille, Marie-Pierre} } @article {3660, title = {{Complementarity of rarity, specialisation and functional diversity metrics to assess community responses to environmental changes, using an example of spider communities in salt marshes}}, journal = {Ecological Indicators}, volume = {46}, year = {2014}, pages = {351{\textendash}357}, abstract = {The study of community responses to environmental changes can be enhanced by the recent development of new metrics useful in applied conservation: relative rarity, ecological specialisation and functional diversity. These different metrics have been critically assessed independently, but are rarely combined in applied conservation studies, especially for less-studied taxa such as arthropods. Here we report how these different metrics can complement each other by using the response of spider communities to environmental changes in salt marshes as an example. Sampling took place using pitfall traps in salt marshes of the Mont St Michel Bay (France) during 2004 and 2007. The sampling design was spatially replicated (3 plots per treatment and 4 traps per plot) and encompassed four habitat treatments: control, sheep grazing, cutting (annual, in summer) and invasion by the plant Elymus athericus. We observed contrasting responses of spider communities to the different treatments: grazing had a negative impact on both rarity and functional diversity but a positive impact on specialisation; cutting had a negative impact on the three metrics; and invasion only had a negative impact on rarity and specialisation. These contrasting responses emphasise the necessity of using different complementary community metrics in such conservation studies. Consequently, rarity-, specialisation-, and functional-based indices should be applied simultaneously more frequently, as they potentially provide additional complementary information about communities. Such complementary information is the key to better-informed conservation choices.}, keywords = {Community Specialisation Index, CSI, Cutting, FDiv, Functional divergence, Functional Divergence Index, Grazing, Index of Relative Rarity, IRR, Species Specialisation Index, spiders, SSI}, issn = {1470160X}, doi = {10.1016/j.ecolind.2014.06.037}, url = {http://www.sciencedirect.com/science/article/pii/S1470160X14002908}, author = {Leroy, Boris and Le Viol, Isabelle and Petillon, J} } @article {3278, title = {Complex patterns in phytoplankton and microeukaryote diversity along the estuarine continuum}, journal = {Hydrobiologia}, volume = {726}, year = {2014}, pages = {155-178}, keywords = {18S rDNA clone libraries, Diversity, Estuarine gradient, Microeukaryotes, Microscopy, Phytoplankton, semiarid area}, doi = {10.1007/s10750-013- 1761-9}, author = {Bazin, Pauline and Fabien Jouenne and Deton-Cabanillas, Anne-Flore and Perez-Ruzafa, Angel and Beno{\^\i}t V{\'e}ron} } @article {3390, title = {Could FaRP-Like Peptides Participate in Regulation of Hyperosmotic Stress Responses in Plants?}, journal = {Front Endocrinol (Lausanne)}, volume = {5}, year = {2014}, month = {2014}, pages = {132}, abstract = {

The ability to respond to hyperosmotic stress is one of the numerous conserved cellular processes that most of the organisms have to face during their life. In metazoans, some peptides belonging to the FMRFamide-like peptide (FLP) family were shown to participate in osmoregulation via regulation of ion channels; this is, a well-known response to hyperosmotic stress in plants. Thus, we explored whether FLPs exist and regulate osmotic stress in plants. First, we demonstrated the response of Arabidopsis thaliana cultured cells to a metazoan FLP (FLRF). We found that A. thaliana express genes that display typical FLP repeated sequences, which end in RF and are surrounded by K or R, which is typical of cleavage sites and suggests bioactivity; however, the terminal G, allowing an amidation process in metazoan, seems to be replaced by W. Using synthetic peptides, we showed that amidation appears unnecessary to bioactivity in A. thaliana, and we provide evidence that these putative FLPs could be involved in physiological processes related to hyperosmotic stress responses in plants, urging further studies on this topic.

}, issn = {1664-2392}, doi = {10.3389/fendo.2014.00132}, author = {Bouteau, Francois and Yann Bassaglia and Monetti, Emanuela and Tran, Daniel and Navet, S and Mancuso, Stefano and El-Maarouf-Bouteau, Hayat and Laure Bonnaud-Ponticelli} } @article {5824, title = {{Climatic Facilitation of the Colonization of an Estuary by Acartia tonsa}}, journal = {PLoS ONE}, volume = {8}, year = {2013}, abstract = {

Global change has become a major driving force of both terrestrial and marine systems. Located at the interface between these two realms, estuarine ecosystems are probably the place where both direct and indirect effects of human activities conspire together to affect biodiversity from phytoplankton to top predators. Among European estuarine systems, the Gironde is the largest estuary of Western Europe and many studies have provided evidence that it has been affected by a variety of anthropogenic stressors such as thermal and chemical pollution, physical alterations and exploitation, especially for maritime traffic. In such a context, species introduction is also a current major issue with the establishment of strong competitive species that could lead to ecosystem reorganization with potential decrease or even disappearance of native species. In the Gironde estuary, this hypothesis was proposed for the invasive shrimp species Palaemon macrodactylus as a decrease in the native species abundance was observed at the same time. Although species introduction often takes place via ballast water, the influence of climate-driven changes on the establishment of new species remains a key issue. The calanoid copepod Acartia tonsa, observed in the Gironde estuary for the first time in 1983, have since colonized most part of the estuary, reaching a level of abundance comparable to the dominant native species Eurytemora affinis. In this study, using both the concept of the ecological niche sensu Hutchinson (fundamental and realized niches) and statistical models, we reveal that the dynamics of the colonization of A. tonsa was facilitated by environmental conditions that have become closer to its environmental optimum with respect to temperature and salinity.

}, issn = {19326203}, author = {Chaalali, Aur{\'e}lie and Gr{\'e}gory Beaugrand and Virginie Raybaud and Goberville, Eric and David, Val{\'e}rie and Bo{\"e}t, Philippe and Benoit Sautour} } @article {9944, title = {Collaborative study for the detection of toxic compounds in shellfish extracts using cell-based assays. Part II: application to shellfish extracts spiked with lipophilic marine toxins}, journal = {Analytical and Bioanalytical Chemistry}, volume = {403}, year = {2012}, month = {Jan-06-2012}, pages = {1995 - 2007}, issn = {1618-2642}, doi = {10.1007/s00216-012-6029-0}, url = {http://link.springer.com/10.1007/s00216-012-6029-0}, author = {Ledreux, Aur{\'e}lie and S{\'e}randour, Anne-Laure and Morin, B{\'e}n{\'e}dicte and Derick, Sylvain and Lanceleur, Rachelle and Sahima Hamlaoui and Furger, Christophe and Bir{\'e}, Ronel and Krys, Sophie and Fessard, Val{\'e}rie and Troussellier, Marc and Bernard, C{\'e}cile} } @article {9943, title = {Collaborative study for the detection of toxic compounds in shellfish extracts using cell-based assays. Part I: screening strategy and pre-validation study with lipophilic marine toxins}, journal = {Analytical and Bioanalytical Chemistry}, volume = {403}, year = {2012}, month = {Jan-06-2012}, pages = {1983 - 1993}, issn = {1618-2642}, doi = {10.1007/s00216-012-6028-1}, url = {http://link.springer.com/10.1007/s00216-012-6028-1}, author = {S{\'e}randour, Anne-Laure and Ledreux, Aur{\'e}lie and Morin, B{\'e}n{\'e}dicte and Derick, Sylvain and Augier, Elie and Lanceleur, Rachelle and Sahima Hamlaoui and Moukha, Serge and Furger, Christophe and Bir{\'e}, Ronel and Krys, Sophie and Fessard, Val{\'e}rie and Troussellier, Marc and Bernard, C{\'e}cile} } @article {6840, title = {Conserving pelagic habitats: seascape modelling of an oceanic top predator}, journal = {Journal of applied ecology}, volume = {48}, year = {2011}, pages = {121{\textendash}132}, doi = {10.1111/j.1365-2664.2010.01910.x}, url = {https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/j.1365-2664.2010.01910.x}, author = {Louzao, Maite and Pinaud, David and Clara P{\'e}ron and Delord, K. and Wiegand, Thorsten and WEIMERSKIRCH, Henri} } @article {5829, title = {{Climate-driven changes in coastal marine systems of western Europe}}, year = {2010}, abstract = {

Coastal marine systems, the interface between the ocean and terrestrial realms, are among the most important systems on the planet both ecologically and economically because of their crucial role in earth system functioning. Although direct impacts of human activities on physical, chemical and biological components of these systems have been widely documented, the potential influence of climate variability is less well known. Here, we used data from Service d{\textquoteright}Observation en Milieu Littoral (SOMLIT), a marine monitoring programme that has since 1997 collected samples at 12 sites located along the French coasts from 42{\textdegree} to 51{\textdegree} N. Applying standardised principal component analysis (PCA), we documented the year-to-year fluctuations in these coastal systems and evaluated the potential influence of climate variability using data on atmospheric circulation (wind intensity and direction), precipitation and temperature. Our study revealed a pronounced sensitivity of these systems to climate variability. As the impact of climate change may become more prominent in the next decades, this study suggests that climate might strongly influence the marine coastal environment and act in synergism with other anthropogenic pressures to alter the state and functioning of biological and ecological systems and the services they provide. {\textcopyright} Inter-Research 2010 {\textperiodcentered} www.int-res.com.

}, doi = {10.3354/meps08564}, author = {Goberville, Eric and Gr{\'e}gory Beaugrand and Benoit Sautour and Paul Tr{\'e}guer and SOMLIT, Team} } @article {6897, title = {Cons{\'e}quences des changements climatiques en milieu oc{\'e}anique}, journal = {Vertigo}, volume = {Hors Serie}, year = {2010}, pages = {1-13}, abstract = {Le changement climatique a une influence grandissante sur l{\textquoteright}ensemble des composantes du syst{\`e}me terre. Cette contribution pr{\'e}sente l{\textquoteright}{\'e}volution des temp{\'e}ratures globales et montre que le changement climatique affecte les syst{\`e}mes biologiques et {\'e}cologiques de la plan{\`e}te, en particulier ceux de l{\textquoteright}Oc{\'e}an Atlantique Nord et de ses mers adjacentes. Les changements biologiques attribu{\'e}s au changement climatique affectent le phytoplancton, le zooplancton, les poissons et modifient la dominance de nombreuses esp{\`e}ces ainsi que la structure, le fonctionnement et la diversit{\'e} des {\'e}cosyst{\`e}mes. Les changements sont aussi per{\c c}us sur la biog{\'e}ographie et la ph{\'e}nologie des esp{\`e}ces et ont impliqu{\'e}, dans certaines r{\'e}gions, des changements {\'e}cosyst{\'e}miques abrupts appel{\'e}s aussi changements de r{\'e}gime. Ces alt{\'e}rations refl{\`e}tent un ajustement des syst{\`e}mes biologiques et {\'e}cologiques face au r{\'e}chauffement des temp{\'e}ratures. Les m{\'e}canismes impliqu{\'e}s sont complexes, pr{\'e}sentant des points de bifurcation et variant dans le temps et l{\textquoteright}espace. La sensibilit{\'e} des organismes vis-{\`a}-vis du r{\'e}chauffement est forte et de faibles fluctuations des temp{\'e}ratures peuvent avoir des effets prononc{\'e}s sur les syst{\`e}mes biologiques et {\'e}cologiques. Il est urgent de placer ces syst{\`e}mes sous surveillance et de d{\'e}velopper des indicateurs coupl{\'e}s {\`a} des outils statistico-math{\'e}matiques adapt{\'e}s afin de d{\'e}tecter, mieux comprendre et anticiper les modifications des syst{\`e}mes biologiques et {\'e}cologiques face au changement climatique global.}, url = {https://www.erudit.org/fr/revues/vertigo/2010-n8-vertigo3983/045530ar/}, author = {Gr{\'e}gory Beaugrand and Goberville, Eric} } @article {7334, title = {Croissance de juv{\'e}niles de Nereis diversicolor nourris avec des d{\'e}tritus d{\textquoteright}halophytes}, journal = {Oceanologica Acta}, volume = {25}, year = {2002}, month = {Jan-05-2002}, pages = {119 - 124}, issn = {03991784}, doi = {10.1016/S0399-1784(02)01187-8}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0399178402011878}, author = {Tarik Meziane and Retiere, Christian} }