@article {9070, title = {Local Food Systems under Global Influence: The Case of Food, Health and Environment in Five Socio-Ecosystems}, journal = {Sustainability}, volume = {15}, year = {2023}, month = {Jan-02-2023}, pages = {2376}, doi = {10.3390/su15032376}, url = {https://www.mdpi.com/2071-1050/15/3/2376}, author = {Rapinski, Michael and Raymond, Richard and Davy, Damien and Herrmann, Thora and Bedell, Jean-Philippe and Ka, Abdou and Odonne, Guillaume and Chanteloup, Laine and Pascal Jean Lopez and Foulquier, Eric and da Silva, Eduardo Ferreira and El Deghel, Nathalie and Bo{\"e}tsch, Gilles and Coxam, V{\'e}ronique and Joliet, Fabienne and Guihard-Costa, Anne-Marie and Tib{\`e}re, Laurence and Nazare, Julie-Anne and Duboz, Priscilla} } @article {9107, title = {Local scale high frequency monitoring of seaweed strandings along an intertidal shore of the English Channel (Luc-sur-Mer, Normandy France) {\textendash} Effect of biotic and abiotic factors}, journal = {Aquatic Botany}, volume = {186}, year = {2023}, month = {Jan-05-2023}, pages = {103616}, issn = {03043770}, doi = {10.1016/j.aquabot.2023.103616}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0304377023000013}, author = {St{\'e}phanie Lemesle and Anne-Marie Rusig and Isabelle Mussio} } @book {9055, title = {La vie en milieu extr{\^e}me}, year = {2022}, pages = {144}, edition = {Editions Quae}, author = {Juliette Ravaux and S{\'e}bastien Duperron} } @article {8975, title = {Life history and ossification patterns in Miguashaia bureaui reveal the early evolution of osteogenesis in coelacanths}, journal = {PeerJ}, volume = {10}, year = {2022}, month = {Jan-01-2022}, pages = {e13175}, abstract = {The study of development is critical for revealing the evolution of major vertebrate lineages. Coelacanths have one of the longest evolutionary histories among osteichthyans, but despite access to extant representatives, the onset of their weakly ossified endoskeleton is still poorly understood. Here we present the first palaeohistological and skeletochronological study of\ Miguashaia bureaui\ from the Upper Devonian of Canada, pivotal for exploring the palaeobiology and early evolution of osteogenesis in coelacanths. Cross sections of the caudal fin bones show that the cortex is made of layers of primary bone separated by lines of arrested growth, indicative of a cyclical growth. The medullary cavity displays remnants of calcified cartilage associated with bony trabeculae, characteristic of endochondral ossification. A skeletochronological analysis indicates that rapid growth during a short juvenile period was followed by slower growth in adulthood. Our new analysis highlights the life history and palaeoecology of\ Miguashaia bureaui\ and reveals that, despite differences in size and habitat, the poor endoskeletal ossification known in the extant\ Latimeria chalumnae\ can be traced back at least 375 million years ago.}, doi = {10.7717/peerj.1317510.37473/fic/10.7717/peerj.13175}, url = {https://peerj.com/articles/13175}, author = {Mond{\'e}jar Fern{\'a}ndez, Jorge and Fran{\c c}ois J Meunier and Cloutier, Richard and Cl{\'e}ment, Ga{\"e}l and Laurin, Michel} } @article {8855, title = {Linking eutrophication to carbon dioxide and methane emissions from exposed mangrove soils along an urban gradient}, journal = {Science of The Total Environment}, volume = {850}, year = {2022}, month = {Jan-12-2022}, pages = {157988}, issn = {00489697}, doi = {10.1016/j.scitotenv.2022.157988}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969722050872}, author = {Barroso, Glenda C. and Gwena{\"e}l Abril and Machado, Wilson and Abuchacra, Rodrigo C. and Peixoto, Roberta B. and Bernardes, Marcelo and Marques, Gabriela S. and Sanders, Christian J. and Oliveira, Gabriela B. and Oliveira Filho, Silvio R. and Amora-Nogueira, Leonardo and Marotta, Humberto} } @article {8888, title = {Long-Term Evolution of the Guadeloupean Shoreline (1950{\textendash}2017)}, journal = {Journal of Coastal Research}, volume = {38}, year = {2022}, month = {Jan-09-2022}, doi = {10.2112/JCOASTRES-D-21-00161.1}, url = {https://bioone.org/journals/journal-of-coastal-research/volume-38/issue-5/JCOASTRES-D-21-00161.1/Long-Term-Evolution-of-the-Guadeloupean-Shoreline-19502017/10.2112/JCOASTRES-D-21-00161.1.full}, author = {Giraud-Renard, El{\'e}a and Franck Dolique and Collin, Antoine and James, Doroth{\'e}e and Gairin, Emma and Courteille, Marine and Beaufort, Oc{\'e}ane and Ren{\'e}-Trouillefou, Malika and Dulormne, Maguy and Jeanson, Matthieu and Lecchini, David} } @article {8754, title = {La protection des milieux aquatiques. Vuln{\'e}rabilit{\'e} et sensibilit{\'e} fonctionnelle des communaut{\'e}s de poissons}, journal = {Sciences Eaux \& Territoires}, volume = {N{\textdegree} 37}, year = {2021}, month = {Jan-12-2022}, pages = {76 - 81}, abstract = {Les approches en {\'e}cologie fonctionnelle ouvrent aujourd{\textquoteright}hui de nouvelles perspectives dans le domaine du diagnostic {\'e}cologique. C{\textquoteright}est le cas par exemple du crit{\`e}re de la redondance fonctionnelle que les auteurs de cet article ont appliqu{\'e} aux communaut{\'e}s de poissons pour {\'e}valuer leur sensibilit{\'e} fonctionnelle {\`a} la perte d{\textquoteright}esp{\`e}ces, et au-del{\`a}, mesurer l{\textquoteright}influence d{\textquoteright}un d{\'e}clin potentiel de diversit{\'e} sur le fonctionnement de l{\textquoteright}{\'e}cosyst{\`e}me. L{\textquoteright}int{\'e}gration de ce type d{\textquoteright}indice, en compl{\'e}ment des crit{\`e}res habituels, est utile pour d{\'e}finir des plans de gestion ou des sites prioritaires {\`a} prot{\'e}ger face {\`a} des perturbations environnementales, en se concentrant sur les processus {\'e}cosyst{\'e}miques.}, issn = {2109-3016}, doi = {10.3917/set.037.0076}, url = {https://www.cairn.info/revue-sciences-eaux-et-territoires-2021-3-page-76.htm?ref=doi}, author = {Teichert, Nils and Lepage, Mario and Hette-Tronquart, Nicolas and Argillier, Christine} } @book {9958, title = {Les collections naturalistes dans la science du XXIe si{\`e}cleLa collection {\guillemotleft} cyanobact{\'e}ries et microalgues {\guillemotright} {\`a} l{\textquoteright}heure des {\guillemotleft} -omics {\guillemotright}}, year = {2021}, pages = {115 - 128}, publisher = {ISTE Group}, organization = {ISTE Group}, doi = {10.51926/ISTE.9049.ch8}, url = {https://www.istegroup.com/fr/produit/les-collections-naturalistes-dans-la-science-du-xxie-siecle/?/43033}, author = {Pellens, Roseli and Duperron, S{\'e}bastien and Duval, Charlotte and Sahima Hamlaoui and Comte, Katia and Y{\'e}pr{\'e}mian, Claude and Bernard, C{\'e}cile} } @article {8090, title = {Levels of genetic differentiation and gene flow between four populations of the Scaly-naped Pigeon, Patagioenas squamosa: implications for conservation}, journal = {Studies on Neotropical Fauna and Environment}, year = {2021}, month = {Feb-02-2022}, pages = {1 - 13}, issn = {0165-0521}, doi = {10.1080/01650521.2021.1878765}, url = {https://www.tandfonline.com/doi/full/10.1080/01650521.2021.1878765}, author = {Cambrone, Christopher and C{\'e}zilly, Frank and Wattier, R{\'e}mi and Eraud, Cyril and Bezault, Etienne} } @article {7211, title = {Links between introduced fish and zooplanktonic and zoobenthic food sources in the food webs of two reservoirs of a semi-arid zone in Algeria}, journal = {African Journal of Aquatic Science}, volume = {46}, year = {2021}, month = {09/2020}, pages = {33- 44}, abstract = {Few studies have focused on the trophic functioning of the reservoirs in Algeria. The study of the gut contents of fish species, as well as the analysis of the stable isotopes of 13C and 15N in the environment, were carried out on samples collected during spring 2010 in two reservoirs: Ghrib and Harreza of the upper Cheliff plain (Algeria) within a semi-arid climate zone. In each of the reservoirs, 13C and 15N were measured in sediments, particulate organic matter (POM), macrophytes, zooplankton, zoobenthos and fish. The isotopic analysis shows that the carbon values that supply both reservoirs, Ghrib and Harreza, were -31.16 {\textpm} 0.05 \< 13C \< -18.01 {\textpm} 0.21{\textperthousand} and -30.82 {\textpm} 0.07 \< 13C \< -17.24 {\textpm} 3.50{\textperthousand}, respectively. The carnivorous fish Sander lucioperca, and Abramis brama, an omnivorous fish, were allocated to the top of the food web in Ghrib and Harreza reservoirs, respectively. In the latter, a reservoir with low hydrodynamism and depth, the food web is simpler with a single fish species, which benefits from both benthic and pelagic sources. In Ghrib, a deeper dam with stronger hydrodynamics, only the riverine crab Potamon algeriense exploits the benthic sources, whereas fish mainly feed on zooplankton}, issn = {1608-5914}, doi = {10.2989/16085914.2020.1787124}, url = {https://www.tandfonline.com/doi/full/10.2989/16085914.2020.1787124}, author = {Djezzar, M and Mortillaro, JM and Doumandji, SE and Tarik Meziane} } @article {8093, title = {Local perceptions of socio-ecological drivers and effects of coastal armoring: the case of Moorea, French Polynesia}, journal = {Population and Environment}, year = {2021}, month = {08/2021}, doi = {10.1007/s11111-021-00391-9}, url = {https://doi.org/10.1007/s11111-021-00391-9}, author = {Calandra, Ma{\"e}lle and Wenc{\'e}lius, Jean and Madi Moussa, Rakamaly and Gache, Camille and Berthe, C{\'e}cile and Waqalevu, Viliame and Ung, Pascal and Lerouvreur, Franck and Bambridge, Tamatoa and Galzin, Ren{\'e} and Fr{\'e}d{\'e}ric Bertucci and Lecchini, David} } @article {8094, title = {Long term relationship between farming damselfish, predators, competitors and benthic habitat on coral reefs of Moorea Island}, journal = {Scientific Reports}, volume = {11}, year = {2021}, month = {07/2021}, pages = {14548}, doi = {10.1038/s41598-021-94010-0}, url = {http://www.nature.com/articles/s41598-021-94010-0}, author = {Feeney, William E. and Fr{\'e}d{\'e}ric Bertucci and Gairin, Emma and Siu, Gilles and Waqalevu, Viliame and Antoine, Morgan and Lison de Loma, Thierry and Planes, Serge and Galzin, Ren{\'e} and Lecchini, David} } @article {7122, title = {Laminariales Host Does Impact Lipid Temperature Trajectories of the Fungal Endophyte Paradendryphiella salina (Sutherland.)}, journal = {Marine Drugs}, volume = {18}, year = {2020}, pages = {379}, abstract = {Kelps are colonized by a wide range of microbial symbionts. Among them, endophytic fungi remain poorly studied, but recent studies evidenced yet their high diversity and their central role in algal defense against various pathogens. Thus, studying the metabolic expressions of kelp endophytes under different conditions is important to have a better understanding of their impacts on host performance. In this context, fatty acid composition is essential to a given algae fitness and of interest to food web studies either to measure its nutritional quality or to infer about its contribution to consumers diets. In the present study,\ Paradendryphiella salina, a fungal endophyte was isolated from\ Saccharina latissima\ (L.) and\ Laminaria digitata\ (Hudson.) and its fatty acid composition was assessed at increasing salinity and temperature conditions. Results showed that fungal composition in terms of fatty acids displayed algal-dependent trajectories in response to temperature increase. This highlights that C18 unsaturated fatty acids are key components in the host-dependant acclimation of\ P. salina\ to salinity and temperature changes}, keywords = {fatty acids, fungal endophytes, laminariales, Paradendryphiella salina}, doi = {10.3390/md18080379}, url = {https://www.mdpi.com/1660-3397/18/8/379}, author = {Vallet, Marine and Tarik Meziane and Najet Thiney and Prado, Soizic and C{\'e}dric Hubas} } @article {7470, title = {Large geographic variability in the resistance of corals to thermal stress}, journal = {Global Ecology and Biogeography}, year = {2020}, month = {May-10-2020}, abstract = {Aim: Predictions for the future of coral reefs are largely based on thermal exposure and poorly account for potential geographic variation in biological sensitivity to thermal stress. Without accounting for complex sensitivity responses, simple climate exposure models and associated predictions may lead to poor estimates of future coral survival and lead to policies that fail to identify and implement the most appropriate interventions. To begin filling this gap, we evaluated a number of attributes of coral taxa and communities that are predicted to influence coral resistance to thermal stress over a large geographic range.
Location:\ Western Indo-Pacific and Central Indo-Pacific Ocean Realms.
Major taxa studied:\ Zooxanthellate Scleractinia {\textendash} hard corals.
Methods:\ We evaluated the geographic variability of coral resistance to thermal stress as the ratio of thermal exposure and sensitivity in 12 countries during the 2016 global-bleaching event. Thermal exposure was estimated by two metrics: (a) historical excess summer heat (cumulative thermal anomaly, CTA), and (b) a multivariate index of sea-surface temperature (SST), light, and water flow (climate exposure, CE). Sensitivity was estimated for 226 sites using coordinated bleaching observations and underwater surveys of coral communities. We then evaluated coral resistance to thermal stress using 48 generalized linear mixed models (GLMMs) to compare the potential influences of geography, historical SST variation, coral cover and coral richness.
Results:\ Geographic faunal provinces and ecoregions were the strongest predictors of coral resistance to thermal stress, with sites in the Australian, Indonesian and Fiji-Caroline Islands coral provinces having higher resistance to thermal stress than Africa-India and Japan-Vietnam provinces. Ecoregions also showed strong gradients in resistance with highest resistance to thermal stress in the western Pacific and Coral Triangle and lower resistance in the surrounding ecoregions. A more detailed evaluation of Coral Triangle and non-Coral Triangle sites found higher resistance to thermal stress within the Coral Triangle, associated with\ c.\ 2.5 times more recent historical thermal anomalies and more centralized, warmer, and cool-water skew SST distributions, than in non-Coral Triangle sites. Our findings identify the importance of environmental history and geographic context in future predictions of bleaching, and identify some potential drivers of coral resistance to thermal stress.
Main conclusions:\ Simple threshold models of heat stress and coral acclimation are commonly used to predict the future of coral reefs. Here and elsewhere we show that large-scale responses of coral communities to heat stress are geographically variable and associated with differential environmental stresses and histories.}, issn = {1466-822X}, doi = {10.1111/geb.13191}, url = {https://onlinelibrary.wiley.com/doi/10.1111/geb.13191}, author = {McClanahan, Timothy R. and Maina, Joseph M. and Darling, Emily S. and Mireille M.M. Guillaume and Muthiga, Nyawira A. and D{\textquoteright}agata, Stephanie and Leblond, Julien and Arthur, Rohan and Jupiter, Stacy D. and Wilson, Shaun K. and Mangubhai, Sangeeta and Ussi, Ali M. and Humphries, Austin T. and Patankar, Vardhan and Shedrawi, George and Julius, Pagu and Ndagala, January and Grimsditch, Gabriel} } @article {8550, title = {A Lean and Performant Hierarchical Model for Human Activity Recognition Using Body-Mounted Sensors}, journal = {Sensors}, volume = {20}, year = {2020}, month = {Jan-06-2020}, pages = {3090}, doi = {10.3390/s20113090}, url = {https://www.mdpi.com/1424-8220/20/11/3090}, author = {Debache, Isaac and Jeantet, Lor{\`e}ne and Chevallier, Damien and Bergouignan, Audrey and Sueur, C{\'e}dric} } @article {7109, title = {Les effets du r{\'e}chauffement climatique sur le m{\'e}tabolisme : les poissons, d{\textquoteright}excellents indicateurs}, year = {2020}, keywords = {photop{\'e}riode, Poissons, r{\'e}chauffement climatique, Temperature}, url = {https://blog.defi-ecologique.com/effets-rechauffement-climatique-metabolisme-poissons/}, author = {Jack Falcon} } @book {8129, title = {Les poissons d{\textquoteright}eau douce de France}, year = {2020}, pages = {704}, publisher = {Biotope Editions, M{\`e}ze ; Mus{\'e}um national d{\textquoteright}Histoire naturelle, Paris (collection Inventaires et biodiversit{\'e})}, organization = {Biotope Editions, M{\`e}ze ; Mus{\'e}um national d{\textquoteright}Histoire naturelle, Paris (collection Inventaires et biodiversit{\'e})}, edition = {2nde}, address = {Paris}, author = {Philippe Keith and Poulet, Nicolas and Denys, Ga{\"e}l and Changeux Thomas and Eric Feunteun and Persat, Henri} } @article {8082, title = {The life and times of Olivier Kah through the lens of fish endocrinologists}, journal = {General and Comparative Endocrinology}, volume = {293}, year = {2020}, month = {Jan-07-2020}, pages = {113480}, issn = {00166480}, doi = {10.1016/j.ygcen.2020.113480}, url = {https://linkinghub.elsevier.com/retrieve/pii/S001664802030188X}, author = {Trudeau, Vance L. and Sylvie Dufour and Prunet, Patrick} } @article {6883, title = {Lipidome variations of deep-sea vent shrimps according to acclimation pressure: A homeoviscous response?}, journal = {Deep Sea Research Part I: Oceanographic Research Papers}, year = {2020}, month = {Jan-04-2020}, pages = {103285}, issn = {09670637}, doi = {10.1016/j.dsr.2020.103285}, url = {https://linkinghub.elsevier.com/retrieve/pii/S096706372030073X}, author = {Bruce Shillito and Desurmont, C. and Barthelemy, D. and Farabos, D. and Despr{\'e}s, G. and Juliette Ravaux and Zbinden, M. and Lamazi{\`e}re, A.} } @article {6952, title = {Looking for environmental and endocrine factors inducing the transformation of Sicyopterus lagocephalus (Pallas 1770) (Teleostei: Gobiidae: Sicydiinae) freshwater prolarvae into marine larvae}, journal = {Aquatic Ecology}, volume = {54}, year = {2020}, month = {Jan-03-2020}, pages = {163 - 180}, issn = {1386-2588}, doi = {10.1007/s10452-019-09734-z}, url = {http://link.springer.com/10.1007/s10452-019-09734-z}, author = {Ellien, C{\'e}line and Causse, Romain and Werner, Ugo and Teichert, Nils and Rousseau, Karine} } @article {6085, title = {Local changes in copepod composition and diversity in two coastal systems of Western Europe}, journal = {Estuarine, Coastal and Shelf Science}, year = {2019}, pages = {106304}, author = {Richirt, Julien and Goberville, Eric and Ruiz-Gonzalez, Vania and Benoit Sautour} } @article {5971, title = {The long time adaptation of coelacanths to moderate deep water: reviewing the evidences}, journal = {Bulletin of Kitakyushu Museum of Natural History and Human History. Series A: Natural History}, volume = {17}, year = {2019}, pages = {29-35}, author = {Cupello, C and Cl{\'e}ment, Ga{\"e}l and Fran{\c c}ois J Meunier and Herbin, Marc and Yoshikata Yabumoto and Brito, Paulo M.} } @article {8114, title = {Low-diversity bacterial microbiota in Southern Ocean representatives of lanternfish genera Electrona, Protomyctophum and Gymnoscopelus (family Myctophidae)}, journal = {PLOS ONE}, volume = {14}, year = {2019}, month = {Nov-12-2019}, pages = {e0226159}, doi = {10.1371/journal.pone.0226159}, url = {https://dx.plos.org/10.1371/journal.pone.0226159}, author = {Gallet, Alison and Koubbi, Philippe and L{\'e}ger, Nelly and Scheifler, Mathilde and Ruiz-Rodriguez, Magdalena and Suzuki, Marcelino T. and Desdevises, Yves and Duperron, S{\'e}bastien}, editor = {Achal, Varenyam} } @article {5364, title = {Latitudinal Patterns in European Seagrass Carbon Reserves: Influence of Seasonal Fluctuations versus Short-Term Stress and Disturbance Events}, journal = {Frontiers in Plant Science}, volume = {9}, year = {2018}, abstract = {

Seagrass meadows form highly productive and valuable ecosystems in the marine environment. Throughout the year, seagrass meadows are exposed to abiotic and biotic variations linked to (i) seasonal fluctuations, (ii) short-term stress events such as, e.g., local nutrient enrichment, and (iii) small-scale disturbances such as, e.g., biomass removal by grazing. We hypothesized that short-term stress events and smallscale disturbances may affect seagrass chance for survival in temperate latitudes. To test this hypothesis we focused on seagrass carbon reserves in the form of starch stored seasonally in rhizomes, as these have been defined as a good indicator for winter survival. Twelve Zostera noltei meadows were monitored along a latitudinal
gradient in Western Europe to firstly assess the seasonal change of their rhizomal starch content. Secondly, we tested the effects of nutrient enrichment and/or biomass removal on the corresponding starch content by using a short-term manipulative field experiment at a single latitude in the Netherlands. At the end of the growing season, we observed a weak but significant linear increase of starch content along the latitudinal gradient from south to north. This agrees with the contention that such reserves are essential for regrowth after winter, which is more severe in the north. In addition, we also observed a weak but significant positive relationship between starch content at the beginning of the growing season and past winter temperatures. This implies a lower regrowth potential after severe winters, due to diminished starch content at the beginning of the growing season. Short-term stress and disturbances
may intensify these patterns, because our manipulative experiments show that when nutrient enrichment and biomass loss co-occurred at the end of the growing season, Z. noltei starch content declined. In temperate zones, the capacity of seagrasses to accumulate carbon reserves is expected to determine carbon-based regrowth after winter. Therefore, processes affecting those reserves might affect seagrass resilience. With increasing human pressure on coastal systems, short- and small-scale stress events are expected to become more frequent, threatening the resilience of seagrass ecosystems, particularly at higher latitudes, where populations tend to have an annual cycle highly dependent on their storage capacity.

}, doi = {doi: 10.3389/fpls.2018.00088}, author = {L.M. Soissons and E.P. Haanstra and M.M. van Katwijk and R. Asmus and I. Auby and L. Barill{\'e} and F.G. Brun and P.G. Cardoso and Nicolas Desroy and J{\'e}r{\^o}me Fournier and F. Ganthy and J.M. Garmendia and Laurent Godet and T.F. Grilo and P. Kadel and B. Ondiviela and G. Peralta and A. Puente and M. Recio and L. Rigouin and M. Valle and P.M.J. Herman and T.J. Bouma} } @article {6013, title = {Life history and morphology of Eel Larvae in the Gulf of Guinea of western Africa: revisiting Jacques Blache{\textquoteright}s research (1960{\textendash}1977) 40 years later}, journal = {Reviews in Fish Biology and Fisheries}, volume = {28}, year = {2018}, pages = {355{\textendash}379}, author = {Miller, Michael J and Robinet, Tony} } @article {5365, title = {Le cas des r{\'e}cifs d{\textquoteright}hermelles Nuisible ou patrimonial : l{\textquoteright}{\'e}volution des perceptions en milieu marin}, journal = {Le Courrier de la Nature}, volume = {306}, year = {2017}, pages = {46-49}, issn = {0011-047}, author = {Patrick Le Mao and Nicolas Desroy and J{\'e}r{\^o}me Fournier and Laurent Godet and Eric Thi{\'e}baut} } @proceedings {7892, title = {Le Mont-Saint-Michel et sa baie peuvent-ils se r{\'e}concilier ?}, volume = {12, s{\'e}rie 3}, year = {2017}, month = {2019}, pages = {103-112}, edition = {Documents Phytosociologiques}, author = {Canard, Alain and Prigent, Lionel and Fr{\'e}d{\'e}ric Ysnel and Robin, Thierry and Alexandre Carpentier and Lefeuvre, Jean-Claude and Bioret, Fr{\'e}d{\'e}ric} } @article {3846, title = {Larval traits of the Caribbean amphidromous goby Sicydium punctatum (Gobioidei: Sicydiinae) in Guadeloupe}, journal = {ECOLOGY OF FRESHWATER FISH}, volume = {25}, year = {2016}, pages = {272-280}, keywords = {amphidromy, larval dispersal, Lesser Antilles, otolith, Sicydiinae}, author = {L{\'e}a Lejeune and H{\'e}l{\`e}ne Tabouret and Taillebois, Laura and Monti, Dominique and Philippe Keith} } @article {4192, title = {Level of contamination by metallic trace elements and organic molecules in the seagrass beds of Guadeloupe island.}, journal = {Environmental Science and Pollution Research}, volume = {23}, year = {2016}, month = {2016}, pages = {61-72}, author = {Claude Bouchon and Lemoine, Soazig and Charlotte R. Dromard and Yolande Bouchon-Navaro} } @article {3879, title = {La p{\^e}che aux {\^\i}les Saint-Paul et Amsterdam}, journal = {Fisheries Centre Research Reports}, volume = {23}, year = {2015}, pages = {37-45}, author = {Patrice Pruvost and Guy Duhamel and Le Manach, Frederic and Palomares, M L D} } @article {9056, title = {Long-term maintenance and public exhibition of deep-sea hydrothermal fauna: The AbyssBox project}, journal = {Deep Sea Research Part II: Topical Studies in Oceanography}, volume = {121}, year = {2015}, month = {Jan-11-2015}, pages = {137 - 145}, issn = {09670645}, doi = {10.1016/j.dsr2.2015.05.002}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0967064515001460}, author = {Bruce Shillito and Juliette Ravaux and Sarrazin, Jozee and Zbinden, M. and Sarradin, Pierre-Marie and Barthelemy, D.} } @article {6825, title = {Long-term maintenance and public exhibition of deep-sea hydrothermal fauna: The AbyssBox project}, journal = {Deep Sea Research Part II: Topical Studies in Oceanography}, volume = {121}, year = {2015}, pages = {137 - 145}, abstract = {The AbyssBox project aims to provide the first permanent public exhibition of live deep-sea hydrothermal fauna maintained at in situ pressure. AbyssBox is a pressurized aquarium designed to function permanently. Here we present details of the project after the public exhibition functioned for more than three years at Oc{\'e}anopolis aquarium in Brest, France. We also describe the AbyssBox pressure aquarium, and provide data and observations on vent shrimp (Mirocaris fortunata) and crabs (Segonzacia mesatlantica) that were sampled from 1700m depth at the Lucky Strike vent field (Mid-Atlantic Ridge) during different cruises. While mortalities exceeded 50\% during the first days following sampling, the remaining animals appeared to acclimate fairly well. Some crabs have now been kept for more than 2 years, and some shrimp have spent more than 3 years in captivity. Primarily designed for a public exhibition, the AbyssBox is already used for scientific purposes, since it provides one of the most effective tools for long-term rearing of deep-sea fauna. AbyssBox is a first step towards maintaining a variety of deep-sea fauna year-round at in situ pressure, which will serve both scientific and public interests.}, keywords = {AbyssBox, Aquaria, Aquariology, Deep waters, Hydrostatic Pressure, Hydrothermal Vents, Public exhibition, Scientific experiments}, issn = {0967-0645}, doi = {https://doi.org/10.1016/j.dsr2.2015.05.002}, url = {http://www.sciencedirect.com/science/article/pii/S0967064515001460}, author = {Bruce Shillito and Juliette Ravaux and Sarrazin, Jozee and Magali Zbinden and Sarradin, Pierre-Marie and Barthelemy Dominique} } @article {5819, title = {{Large and local-scale influences on physical and chemical characteristics of coastal waters of Western Europe during winter}}, journal = {Journal of Marine Systems}, volume = {139}, year = {2014}, pages = {79{\textendash}90}, abstract = {

There is now a strong scientific consensus that coastal marine systems of Western Europe are highly sensitive to the combined effects of natural climate variability and anthropogenic climate change. However, it still remains challenging to assess the spatial and temporal scales at which climate influence operates. While large-scale hydro-climatic indices, such as the North Atlantic Oscillation (NAO) or the East Atlantic Pattern (EAP) and the weather regimes such as the Atlantic Ridge (AR), are known to be relevant predictors of physical processes, changes in coastal waters can also be related to local hydro-meteorological and geochemical forcing. Here, we study the temporal variability of physical and chemical characteristics of coastal waters located at about 48{\textdegree}N over the period 1998-2013 using (1) sea surface temperature, (2) sea surface salinity and (3) nutrient concentration observations for two coastal sites located at the outlet of the Bay of Brest and off Roscoff, (4) river discharges of the major tributaries close to these two sites and (5) regional and local precipitation data over the region of interest. Focusing on the winter months, we characterize the physical and chemical variability of these coastal waters and document changes in both precipitation and river runoffs. Our study reveals that variability in coastal waters is connected to the large-scale North Atlantic atmospheric circulation but is also partly explained by local river influences. Indeed, while the NAO is strongly related to changes in sea surface temperature at the Brest and Roscoff sites, the EAP and the AR have a major influence on precipitations, which in turn modulate river discharges that impact sea surface salinity at the scale of the two coastal stations. {\textcopyright} 2014 Elsevier B.V.

}, keywords = {Climate variability, Coastal systems, Large-scale hydro-climatic indices, River inputs, Time-series, Weather regimes}, issn = {09247963}, author = {Paul Tr{\'e}guer and Goberville, Eric and Barrier, Nicolas and St{\'e}phane L{\textquoteright}Helguen and Morin, Pascal and Bozec, Yann and Rimmelin-Maury, Peggy and Czamanski, Marie and Emilie Grossteffan and Cariou, Thierry and R{\'e}p{\'e}caud, Michel and Qu{\'e}m{\'e}ner, Loic} } @article {3856, title = {Long-term studies of Crozet Island killer whales are fundamental to understanding the economic and demographic consequences of their depredation behaviour on the Patagonian toothfish fishery.}, journal = {ICES journal of marine science}, year = {2014}, author = {Tixier, P and Guinet, C and Nicolas Gasco} } @article {3631, title = {Looking for the bird Kiss: evolutionary scenario in sauropsids.}, journal = {BMC Evol Biol}, volume = {14}, year = {2014}, month = {2014}, pages = {30}, abstract = {

BACKGROUND: The neuropeptide Kiss and its receptor KissR are key-actors in the brain control of reproduction in mammals, where they are responsible for the stimulation of the activity of GnRH neurones. Investigation in other vertebrates revealed up to 3 Kiss and 4 KissR paralogs, originating from the two rounds of whole genome duplication in early vertebrates. In contrast, the absence of Kiss and KissR has been suggested in birds, as no homologs of these genes could be found in current genomic databases. This study aims at addressing the question of the existence, from an evolutionary perspective, of the Kisspeptin system in birds. It provides the first large-scale investigation of the Kisspeptin system in the sauropsid lineage, including ophidian, chelonian, crocodilian, and avian lineages.

RESULTS: Sauropsid Kiss and KissR genes were predicted from multiple genome and transcriptome databases by TBLASTN. Phylogenetic and syntenic analyses were performed to classify predicted sauropsid Kiss and KissR genes and to re-construct the evolutionary scenarios of both gene families across the sauropsid radiation.Genome search, phylogenetic and synteny analyses, demonstrated the presence of two Kiss genes (Kiss1 and Kiss2 types) and of two KissR genes (KissR1 and KissR4 types) in the sauropsid lineage. These four genes, also present in the mammalian lineage, would have been inherited from their common amniote ancestor. In contrast, synteny analyses supported that the other Kiss and KissR paralogs are missing in sauropsids as in mammals, indicating their absence in the amniote lineage. Among sauropsids, in the avian lineage, we demonstrated the existence of a Kiss2-like gene in three bird genomes. The divergence of these avian Kiss2-like sequences from those of other vertebrates, as well as their absence in the genomes of some other birds, revealed the processes of Kiss2 gene degeneration and loss in the avian lineage.

CONCLUSION: These findings contribute to trace back the evolutionary history of the Kisspeptin system in amniotes and sauropsids, and provide the first molecular evidence of the existence and fate of a Kiss gene in birds.

}, keywords = {Amino Acid Sequence, Animals, Avian Proteins, Biological Evolution, Birds, Humans, Kisspeptins, Molecular Sequence Data, Phylogeny, Receptors, G-Protein-Coupled, Reptiles, Sequence Alignment, Synteny}, issn = {1471-2148}, doi = {10.1186/1471-2148-14-30}, author = {Pasquier, J{\'e}r{\'e}my and Anne-Gaelle Lafont and Karine Rousseau and Qu{\'e}rat, Bruno and Chemineau, Philippe and Sylvie Dufour} } @article {5823, title = {{Long-term phenological shifts in raptor migration and climate}}, journal = {PLoS ONE}, volume = {8}, year = {2013}, abstract = {

Climate change is having a discernible effect on many biological and ecological processes. Among observed changes, modifications in bird phenology have been widely documented. However, most studies have interpreted phenological shifts as gradual biological adjustments in response to the alteration of the thermal regime. Here we analysed a long-term dataset (1980-2010) of short-distance migratory raptors in five European regions. We revealed that the responses of these birds to climate-induced changes in autumn temperatures are abrupt and synchronous at a continental scale. We found that when the temperatures increased, birds delayed their mean passage date of autumn migration. Such delay, in addition to an earlier spring migration, suggests that a significant warming may induce an extension of the breeding-area residence time of migratory raptors, which may eventually lead to residency.

}, author = {Jaffre, Mikael and Gr{\'e}gory Beaugrand and Goberville, Eric and Jiguet, Fr{\'e}d{\'e}ric and Kjell{\'e}n, Nils and Troost, Gerard and Dubois, Philippe J. and Lepr{\^e}tre, Alain and Christophe Luczak} } @article {5825, title = {{Long-term responses of North Atlantic calcifying plankton to climate change}}, journal = {Nature Climate Change}, volume = {3}, year = {2013}, pages = {263{\textendash}267}, abstract = {

The global increase in atmospheric carbon dioxide concentration is potentially threatening marine biodiversity in two ways. First, carbon dioxide and other greenhouse gases accumulating in the atmosphere are causing global warming1. Second, carbon dioxide is altering sea water chemistry, making the ocean more acidic2. Although temperature has a cardinal influence on all biological processes from the molecular to the ecosystem level3, acidification might impair the process of calcification or exacerbate dissolution of calcifying organisms4. Here, we show however that North Atlantic calcifying plankton primarily responded to climate-induced changes in temperatures during the period 1960{\textendash}2009, overriding the signal from the effects of ocean acidification. We provide evidence that foraminifers, coccolithophores, both pteropod and nonpteropod molluscs and echinoderms exhibited an abrupt shift circa 1996 at a time of a substantial increase in temperature5 and that some taxa exhibited a poleward movement in agreement with expected biogeographical changes under sea temperature warming6,7. Although acidification may become a serious threat to marine calcifying organisms, our results suggest that over the study period the primary driver of North Atlantic calcifying planktonwas oceanic temperature.

}, issn = {1758-678X}, url = {http://www.nature.com/doifinder/10.1038/nclimate1753}, author = {Gr{\'e}gory Beaugrand and McQuatters-Gollop, Abigail and Martin Edwards and Goberville, Eric} } @article {7330, title = {Litter dynamics and particulate organic matter outwelling from a subtropical mangrove in Okinawa Island, South Japan}, journal = {Estuarine, Coastal and Shelf Science}, volume = {63}, year = {2005}, month = {Jan-04-2005}, pages = {301 - 313}, issn = {02727714}, doi = {10.1016/j.ecss.2004.11.022}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771404003543}, author = {Mfilinge, Prosper L. and Tarik Meziane and Bachok, Zainudin and Tsuchiya, Makoto} }