@article {9245, title = {Physiological condition of the warty venus (Venus verrucosa L. 1758) larvae modulates response to pile driving and drilling underwater sounds}, journal = {Frontiers in Marine Science}, volume = {10}, year = {2023}, month = {Jul-06-2024}, abstract = {Noise is now recognized as a new form of pollution in marine coastal habitats. The development of marine renewable energies has introduced new sonorous perturbations, as the wind farm installation requires pile driving and drilling operations producing low frequency sounds at high sound pressure levels. Exponential expansion of offshore wind farms is occurring worldwide, making impact studies, particularly on benthic species highly abundant and diverse in the coastal area used for wind farming, a necessity. As larval recruitment is the basis for establishing a population, we conducted an experimental study to assess the interactive effects of pile driving or drilling sounds and larval rearing temperature on the endobenthic bivalve Venus verrucosa. In ectothermic animals, temperature modifies the organism{\textquoteright}s physiology, resulting in performance variability. We hypothesize that temperature modulation could change larval responses to noise and explore the potential interacting effects of temperature and noise. Using two distinct rearing temperatures, physiologically different batches of larvae were produced with contrasting fatty acid content and composition in the neutral and polar lipid fractions. Without defining any absolute audition threshold for the larvae, we demonstrate that the effects of temperature and noise were ontogenic-dependent and modulated larval performance at the peri-metamorphic stage, acting on the metamorphosis dynamic. At the pediveligers stage, a strong interaction between both factors indicated that the response to noise was highly related to the physiological condition of the larvae. Finally, we suggest that underwater noise reduces the compensatory mechanisms established to balance the temperature increase.}, keywords = {Anthropophony, energetic metabolism, fatty acids, larval recruitment, Metamorphosis trigger}, doi = {https://doi.org/10.3389/fmars.2023.1117431}, url = {https://www.frontiersin.org/articles/10.3389/fmars.2023.1117431/full}, author = {Gigot, Mathilde and Tremblay, Rejean and Bonnel, Julien and Chauvaud, Laurent and Olivier, Fr{\'e}d{\'e}ric} } @article {9052, title = {Physiological conditions favorable to domoic acid production by three Pseudo-nitzschia species}, journal = {Journal of Experimental Marine Biology and Ecology}, volume = {559}, year = {2023}, month = {Jan-02-2023}, pages = {151851}, issn = {00220981}, doi = {10.1016/j.jembe.2022.151851}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0022098122001599}, author = {Aurore Sauvey and Pascal Claquin and Le Roy, Bertrand and Jolly, Orianne and Juliette Fauchot} } @article {9200, title = {Pile driving and drilling underwater sounds impact the metamorphosis dynamics of Pecten maximus (L., 1758) larvae}, journal = {Marine Pollution Bulletin}, volume = {191}, year = {2023}, month = {Jan-06-2023}, pages = {114969}, abstract = {One of the biggest challenges of the 21st century is to reduce carbon emissions and offshore wind turbines seem to be an efficient solution. However, during the installation phase, high levels of noise are emitted whose impacts remain not well known, particularly on benthic marine invertebrates displaying a bentho-planktonic life-cycle. For one century, larval settlement and subsequent recruitment has been considered as a key topic in ecology as it determines largely population renewal. Whereas several recent studies have shown that trophic pelagic but also natural soundscape cues could trigger bivalve settlement, the role of anthropogenic noise remains poorly documented. Therefore, we conducted experiments to assess potential interacting effects of diet and pile driving or drilling sounds on the great scallop (Pecten maximus) larval settlement. We demonstrate here that pile driving noise stimulates both growth and metamorphosis as well as it increases the total lipid content of competent larvae. Conversely, drilling noise reduces both survival and metamorphosis rates. For the first time, we provide evidence of noise impacts associated to MREs installation on P. maximus larvae and discuss about potential consequences on their recruitment.}, keywords = {Anthropophony, larval settlement, Metamorphosis trigger, Pecten maximus, recruitment, Wind turbine}, issn = {0025326X}, doi = {10.1016/j.marpolbul.2023.114969}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0025326X23004010}, author = {Gigot, Mathilde and Olivier, Fr{\'e}d{\'e}ric and Cervello, Gauthier and Tremblay, Rejean and Mathias, Delphine and Meziane, Tarik and Chauvaud, Laurent and Bonnel, Julien} } @article {9066, title = {Pairing AIS data and underwater topography to assess maritime traffic pressures on cetaceans: Case study in the Guadeloupean waters of the Agoa sanctuary}, journal = {Marine Policy}, volume = {143}, year = {2022}, month = {Jan-09-2022}, pages = {105160}, issn = {0308597X}, doi = {10.1016/j.marpol.2022.105160}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0308597X2200207X}, author = {Madon, B{\'e}n{\'e}dicte and Le Guyader, Damien and Jung, Jean-Luc and de Montgolfier, Benjamin and Pascal Jean Lopez and Foulquier, Eric and Bouveret, Laurent and Le Berre, Iwan} } @article {8739, title = {Passive acoustics suggest two different feeding mechanisms in the Atlantic walrus (Odobenus rosmarus rosmarus)}, journal = {Polar Biology}, year = {2022}, month = {Sep-06-2023}, abstract = {The vocal repertoire of walruses has been widely described in the bioacoustic literature. These marine mammals produce several distinct types of vocalizations for intraspecific communication during the breeding season. In this study, we provide the first evidence of walrus-generated sounds during foraging dives when they feed on bivalves. We recorded two types of sounds that we associated to different feeding mechanisms. The first sound type was brief and low in frequency that we relate to the suction of soft parts from the bivalves{\textquoteright} shells through the use of walrus powerful tongues, which is the common feeding behavior reported in the walrus literature. We also recorded a second sound type composed of multiple broadband pulse trains. We hypothesize the latter were associated with bivalve shell cracking by walruses, which would represent a new feeding mechanism in the walrus literature. This new feeding mechanism is either related to bivalves{\textquoteright} ecology or to walruses removing the sediment when searching for food. During this study, we observed bivalves lying on the seafloor instead of being buried in the sediment in walrus feeding areas while scuba diving. As a result, walruses cannot use suction to feed on soft body part of bivalves and have to use another strategy, mastication. Our findings provide a first step towards using passive acoustics to quantify walrus behavior and feeding ecology.}, keywords = {Bioacoustics, bivalves, Feeding Behavior, Marine mammal, Young Sound fjord}, issn = {0722-4060}, doi = {10.1007/s00300-022-03055-y}, url = {https://link.springer.com/10.1007/s00300-022-03055-y}, author = {J{\'e}z{\'e}quel, Youenn and Mathias, Delphine and Fr{\'e}d{\'e}ric Olivier and Amice, Erwan and Chauvaud, Sylvain and Jolivet, Aur{\'e}lie and Bonnel, Julien and Sejr, Mikael K. and Chauvaud, Laurent} } @article {8681, title = {Phylogeography of the veined squid, Loligo forbesii, in European watersAbstract}, journal = {Scientific Reports}, volume = {12}, year = {2022}, month = {Jan-12-2022}, doi = {10.1038/s41598-022-11530-z}, url = {https://www.nature.com/articles/s41598-022-11530-z}, author = {G{\"o}pel, Anika and Oesterwind, Daniel and Barrett, Christopher and Cannas, Rita and Caparro, Luis Silva and Carbonara, Pierluigi and Donnaloia, Marilena and Follesa, Maria Cristina and Larivain, Angela and Laptikhovsky, Vladimir and Lefkaditou, Evgenia and Jean-Paul Robin and Santos, Maria Bego{\~n}a and Sobrino, Ignacio and Valeiras, Julio and Valls, Maria and Vieira, Hugo C. and Wieland, Kai and Bastrop, Ralf} } @article {9005, title = {A possible strong impact of tidal power plant on silver eels{\textquoteright} migration}, journal = {Estuarine, Coastal and Shelf Science}, volume = {278}, year = {2022}, month = {Jan-11-2022}, pages = {108116}, abstract = {Very few\ tidal power\ plants exist in the world. The first one was built in the Rance\ estuary\ (Brittany, France) in 1966 and the second one in South Korea. However, with the increasing demand in renewable energy, other tidal power plant projects are being studied.

These power plants are larger than unidirectional fluvial hydropower plants and strongly modify the natural\ tidal cycle\ in estuarine systems. As such, their effect on megafaunal movements might strongly differ from those caused by unidirectional fluvial hydropower plants and should be specifically considered and studied before the development of similar constructions.

In this study, an acoustic\ telemetry\ array was deployed to track 25 silver eels released 16\ km upstream of the Rance tidal power dam. Only 1/3 of the tagged eels passed the dam and reached the sea. Data suggested that eels interrupted their migration up to 5\ km upstream of the dam. We assume that the noise and tidal disturbance generated by the dam could lead to a disruption of a high proportion of silver eels{\textquoteright} reproductive migration.}, issn = {02727714}, doi = {10.1016/j.ecss.2022.108116}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771422003742}, author = {Trancart, Thomas and Teichert, Nils and Lamoureux, J{\'e}zabel and Gharnit, Elouana and Acou, Anthony and de Oliveira, Eric and Roy, Romain and Feunteun, Eric} } @article {8834, title = {Potential combined impacts of climate change and non-indigenous species arrivals on Bay of Biscay trophic network structure and functioning}, journal = {Journal of Marine Systems}, volume = {228}, year = {2022}, month = {Jan-04-2022}, pages = {103704}, issn = {09247963}, doi = {10.1016/j.jmarsys.2022.103704}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0924796322000070}, author = {Le Marchand, M. and Ben Rais Lasram, F. and Araignous, E. and Saint-B{\'e}at, B. and Lassalle, G. and Michelet, N. and Serre, S. and Safi, G. and Lejart, M. and Nathalie Niquil and Le Loc{\textquoteright}h, F.} } @article {8946, title = {Preventing misuse of high-resolution remote sensing data}, journal = {Peer Community In Ecology}, year = {2022}, month = {Jul-10-2024}, abstract = {To observe, characterise, identify, understand, predict... This is the approach that researchers follow every day. This sequence is tirelessly repeated as the biological model, the targeted ecosystem and/or the experimental, environmental or modelling conditions change. This way of proceeding is essential in a world of rapid change in response to the frenetic pace of intensifying pressures and forcings that impact ecosystems. To better understand our Earth and the dynamics of its components, to map ecosystems and diversity patterns, and to identify changes, humanity had to demonstrate inventiveness and defy gravity.}, doi = {10.24072/pci.ecology.100102}, url = {https://ecology.peercommunityin.org/articles/rec?id=403}, author = {Goberville, Eric} } @article {8447, title = {Pull the trigger: interplay between benthic and pelagic cues driving the early recruitment of a natural bivalve assemblage}, journal = {Ecosphere}, volume = {13}, year = {2022}, month = {Jan-01-2022}, abstract = {Larval settlement and recruitment are crucial phases in the benthic-pelagic life cycle of marine benthic invertebrates that controls population dynamic and habitat connectivity. Our study investigated potential triggers driving the settlement of bivalve larvae in a highly dynamic intertidal coarse sand habitat. The early recruitment rate of five dominant bivalve families and abiotic conditions, particulate (\<20 {\textmu}m) organic matter and sediment organic matter, were monitored from May to October 2014. Pelagic particulate organic matter (\<20 {\textmu}m) was dominated by picoplankton throughout the sampling period, with a substantial diatom bloom in spring. Sediment was characterized by fresh organic matter in spring, as suggested by the dominant contribution of polyunsaturated fatty acids, and by a higher proportion of bacterial fatty acid markers during late summer. Different dynamics were also observed in early bivalve recruitment rates, with four different patterns observed over the sampling period. Multiple regression analysis on selected bivalve families showed species-specific responses to trophic settlement triggers. Indeed, the larva recruitment rate of Mytilidae paralleled pelagic concentration of picoeucaryotes, with the peak early recruitment rate occurring in spring. Surprisingly, the early recruitment rate of Mactridae larvae showed a significant relation to bacterial concentration in the surficial sediment at the end of summer. While the Mytilidae results in such a eutrophic system confirmed those of a previous study in oligotrophic lagoons, therefore supporting the trophic settlement trigger hypothesis, more work is needed to understand the potential role of bacteria in the early recruitment of Mactridae. These results highlight for the first-time inter-specific differences in trophic cues that potentially trigger primary settlement in natural bivalve assemblages.}, keywords = {bacteria, bivalves, Chausey Archipelago, early larval recruitment, fatty acids, picoeucaryotes, trophic settlement trigger}, issn = {2150-8925}, doi = {10.1002/ecs2.v13.110.1002/ecs2.3672}, url = {https://onlinelibrary.wiley.com/toc/21508925/13/1}, author = {Androuin, Thibault and Barbier, Pierrick and Foret, Martin and Tarik Meziane and Thomas, Mathilde and Archambault, Philippe and Winkler, Gesche and Tremblay, Rejean and Fr{\'e}d{\'e}ric Olivier} } @article {8059, title = {Pelagic habitats under the MSFD D1: scientific advice of policy relevance : recommendations to frame problems and solutions for the pelagic habitats{\textquoteright} assessment.}, year = {2021}, institution = {Publications Office of the European Union}, abstract = {Pelagic habitats are a policy priority below Descriptor 1 (Biodiversity) of the Marine Strategy Framework Directive (MSFD). They are addressed under the D1C6 criterion, stating {\textquotedblleft}the condition of the habitat type, including its biotic and abiotic structure and its functions{\textellipsis}, is not adversely affected due to anthropogenic pressures{\textquotedblright}. The evaluation of pelagic habitats status is challenged by the functional and structural characteristics of pelagic habitat diversity and processes. To date, pelagic habitats assessments are lacking in common criteria and methodologies that characterize the habitat while accounting for the effects of anthropogenic pressures to achieve the Good Environmental Status (GES). It is therefore necessary to prioritise communication between scientific and policy communities and frame pelagic research to agree on common methods and approaches at regional or EU scale. This is key for achieving harmonised and comparable pelagic assessments for the MSFD. This report summarizes the outcomes on the assessment workflow of pelagic habitats of the JRC {\textquotedblleft}MSFD pelagic habitats{\textquotedblright} workshop (9th and 10th March 2021), and the need for coordinated evaluations of the scientific challenges of policy relevance. Recommendations on the MSFD implementation of D1C6, that were generated from the experts during the workshop, will be communicated to the MSFD policy groups and the EU Member States competent authorities to support future harmonised assessment of pelagic habitats.}, doi = {10.2760/081368}, url = {https://data.europa.eu/doi/10.2760/081368}, author = {Magliozzi, Chiara and Druon, Jean-Noel and Palialexis, Andreas and Aguzzi, Laura and Alexande, Brittany and Antoniadis, Konstantinos and Artigas, Luis Felipe and Azzellino, Arianna and Bisinicu, Elena and Boicenco, Laura and Bojanic, Natalia and Borrello, Patrizia and Boschetti, Simona and Carmo, Vanda and Cervantes, Pablo and Coll, Marta and Curmi, Marta and Del Amo, Yolanda and Dutz, Joerg and Franc{\'e}, Janja and Garces, Esther and Gea, Guillermo and Giannakourou, Antonia and Goberville, Eric and Goffart, Anne and Gomes Pereira, Jose Nuno and Gonzalez-Quiros, Rafael and Gorokhova, Elena and Guglielmo, Letterio and Pierre H{\'e}laou{\"e}t and Henriques, Filipe and Heyden, Birgit and Jaanus, Andres and Jakobsen, Hans and Johansen, Marie and Jurgensone, Iveta and Korpinen, Samuli and Kremp, Anke and Kuosa, Harri and Labayle, Lucille and Lazar, Luminita and Abigail McQuatters-Gollop and Nincevic, Zivana and Pagou, Popi and Penna, Antonella and Pettersson, Karin and Ruiter, Hans and Skejic, Sanda and Spada, Emanuela and Spinu, Alina and Tew-Kai, Emilie and Totti, Cecilia and Tunesi, Leonardo and Vadrucci, Maria Rosaria and Valavanis, Vasilis and Varkitzi, Ioanna and Vasiliades, Lavrendios and Veldeki, Georgia and Vidjak, Olja and Vincent, Doroth{\'e}e and Zervoudaki, Soultana} } @article {8083, title = {Photoperiodic regulation of pituitary thyroid-stimulating hormone and brain deiodinase in Atlantic salmon}, journal = {Molecular and Cellular Endocrinology}, volume = {519}, year = {2021}, month = {Jan-01-2021}, pages = {111056}, issn = {03037207}, doi = {10.1016/j.mce.2020.111056}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0303720720303580}, author = {Irachi, Shotaro and Hall, Daniel J. and Fleming, Mitchell S. and Maugars, Gersende and Bj{\"o}rnsson, Bj{\"o}rn Thrandur and Sylvie Dufour and Uchida, Katsuhisa and McCormick, Stephen D.} } @article {8249, title = {Photosynthesis from stolen chloroplasts can support sea slug reproductive fitness}, journal = {Proceedings of the Royal Society B: Biological Sciences}, volume = {288}, year = {2021}, month = {May-09-2023}, abstract = {Some sea slugs are able to steal functional chloroplasts (kleptoplasts) from their algal food sources, but the role and relevance of photosynthesis to the animal host remain controversial. While some researchers claim that kleptoplasts are slowly digestible {\textquoteleft}snacks{\textquoteright}, others advocate that they enhance the overall fitness of sea slugs much more profoundly. Our analysis shows light-dependent incorporation of\ 13C and\ 15N in the albumen gland and gonadal follicles of the sea slug\ Elysia timida, representing translocation of photosynthates to kleptoplast-free reproductive organs. Long-chain polyunsaturated fatty acids with reported roles in reproduction were produced in the sea slug cells using labelled precursors translocated from the kleptoplasts. Finally, we report reduced fecundity of\ E. timida\ by limiting kleptoplast photosynthesis. The present study indicates that photosynthesis enhances the reproductive fitness of kleptoplast-bearing sea slugs, confirming the biological relevance of this remarkable association between a metazoan and an algal-derived organelle.}, issn = {0962-8452}, doi = {10.1098/rspb.2021.1779}, url = {https://royalsocietypublishing.org/doi/10.1098/rspb.2021.1779}, author = {Cartaxana, Paulo and Rey, Felisa and LeKieffre, Charlotte and Lopes, Diana and C{\'e}dric Hubas and Spangenberg, Jorge E. and Escrig, St{\'e}phane and Bruno Jesus and Calado, Gon{\c c}alo and Domingues, Ros{\'a}rio and K{\"u}hl, Michael and Calado, Ricardo and Meibom, Anders and Cruz, S{\'o}nia} } @article {8128, title = {Phylogenetic analysis and characterization of a new parasitic cnidarian (Myxosporea: Myxobolidae) parasitizing skin of the giant mottled eel from the Solomon Islands}, journal = {Infection, Genetics and Evolution}, volume = {94}, year = {2021}, month = {Jan-10-2021}, pages = {104986}, issn = {15671348}, doi = {10.1016/j.meegid.2021.104986}, url = {https://linkinghub.elsevier.com/retrieve/pii/S1567134821002835}, author = {Mathews, Patrick D. and Bonillo, C{\'e}line and Rabet, Nicolas and Clara Lord and Causse, Romain and Philippe Keith and Audebert, Fabienne} } @article {8430, title = {Pituitary Hormones mRNA Abundance in the Mediterranean Sea Bass Dicentrarchus labrax: Seasonal Rhythms, Effects of Melatonin and Water Salinity}, journal = {Frontiers in Physiology}, volume = {12}, year = {2021}, month = {12/15/2021}, pages = {774975}, type = {Research article}, abstract = {In fish, most hormonal productions of the pituitary gland display daily and/or seasonal
rhythmic patterns under control by upstream regulators, including internal biological
clocks. The pineal hormone melatonin, one main output of the clocks, acts at different
levels of the neuroendocrine axis. Melatonin rhythmic production is synchronized mainly
by photoperiod and temperature. Here we aimed at better understanding the role
melatonin plays in regulating the pituitary hormonal productions in a species of scientific
and economical interest, the euryhaline European sea bass Dicentrarchus labrax. We
investigated the seasonal variations in mRNA abundance of pituitary hormones in two
groups of fish raised one in sea water (SW fish), and one in brackish water (BW fish). The
mRNA abundance of three melatonin receptors was also studied in the SW fish. Finally,
we investigated the in vitro effects of melatonin or analogs on the mRNA abundance of
pituitary hormones at two times of the year and after adaptation to different salinities.
We found that (1) the reproductive hormones displayed similar mRNA seasonal profiles
regardless of the fish origin, while (2) the other hormones exhibited different patterns
in the SW vs. the BW fish. (3) The melatonin receptors mRNA abundance displayed
seasonal variations in the SW fish. (4) Melatonin affected mRNA abundance of most
of the pituitary hormones in vitro; (5) the responses to melatonin depended on its
concentration, the month investigated and the salinity at which the fish were previously
adapted. Our results suggest that the productions of the pituitary are a response to
multiple factors from internal and external origin including melatonin. The variety of the
responses described might reflect a high plasticity of the pituitary in a fish that faces
multiple external conditions along its life characterized by marked daily and seasonal
changes in photoperiod, temperature and salinity.}, keywords = {annual variations, hormones, melatonin, photoperiod, pituitary, salinity, sea bass}, doi = {10.3389/fphys.2021.774975}, url = {https://www.frontiersin.org/articles/10.3389/fphys.2021.774975/full?\&utm_source=Email_to_authors_\&utm_medium=Email\&utm_content=T1_11.5e1_author\&utm_campaign=Email_publication\&field=\&journalName=Frontiers_in_Physiology\&id=774975}, author = {Jack Falcon}, editor = {Maria-Jesus Herrero and Laura-Gabriela Nisembaum} } @article {7778, title = {Prokaryotic abundance, cell size and extracellular enzymatic activity in a human impacted and mangrove dominated tropical estuary (Can Gio, vietnam)}, journal = {Estuarine, Coastal and Shelf Science}, year = {2021}, month = {Jan-02-2021}, pages = {107253}, abstract = {Extracellular enzymatic activities constitute the first and limiting step of the whole process of organic matter (OM) cycling in aquatic ecosystems. This study aims to identify the factors controlling prokaryotes ability to hydrolyse OM in an Indo-Pacific tropical mangrove ecosystem (Can Gio, Vietnam). Prokaryotic abundance and leucine-aminopeptidase exo-proteolytic activity (EPA) were measured at vertical (from the sea-surface microlayer to bottom waters), spatial (along a transect within the estuary) and seasonal (wet and dry season) scales. Prokaryotic abundance ranged from 1.2 to 5.7\ {\texttimes}\ 109\ cells L-1\ and EPA ranged from 24 to 505\ nmol\ L-1\ h-1\ that was relatively similar to other highly productive ecosystems. The estuary was poorly stratified, most probably because of high water turbulence. Yet, exo-proteolytic activity was significantly higher in bottom waters, where higher loads of suspended particulate matter were measured. Seasonal and spatial differences in EPA suggest that the nature of OM transported by the Can Gio mangrove estuary affect EPA. The latter seems to be increased by two {\textquotedblleft}uncommon{\textquotedblright} situations: the input of fresh and labile OM (e.g.\ shrimp farm effluents) or the lack of labile OM and the need to hydrolyse refractory compounds (e.g.\ during the dry season).}, issn = {02727714}, doi = {10.1016/j.ecss.2021.107253}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771421000895}, author = {Frank David and Tarik Meziane and Marchand, Cyril and Rolland, Guillaume and Pham, Aur{\'e}lie and Thanh-Nho, Nguyen and Lamy, Dominique} } @article {8449, title = {Passive rewilding may (also) restore phylogenetically rich and functionally resilient forest plant communities.}, journal = {Ecol Appl}, volume = {30}, year = {2020}, month = {2020 01}, pages = {e02007}, abstract = {

Passive rewilding is increasingly seen as a promising tool to counterbalance biodiversity losses and recover native forest ecosystems. One key question, crucial to understanding assembly processes and conservation issues underlying land-use change, is the extent to which functional and phylogenetic diversity may recover in spontaneous recent woodlands. Here, we compared understorey plant communities of recent woodlands (which result from afforestation on agricultural lands during the 20th century) with those of ancient forests (uninterrupted for several centuries) in a hotspot of farmland abandonment in western Europe. We combined taxonomic, functional, and phylogenetic diversity metrics to detect potential differences in community composition, structure (richness, divergence), conservation importance (functional originality and specialization, evolutionary distinctiveness) and resilience (functional redundancy, response diversity). The recent and ancient forests harbored clearly distinct compositions, especially regarding the taxonomic and phylogenetic facets. Recent woodlands had higher taxonomic, functional and phylogenetic richness and a higher evolutionary distinctiveness, whereas functional divergence and phylogenetic divergence were higher in ancient forests. On another hand, we did not find any significant differences in functional specialization, originality, redundancy, or response diversity between recent and ancient forests. Our study constitutes one of the first empirical pieces of evidence that recent woodlands may spontaneously regain plant communities phylogenetically rich and functionally resilient, at least as much as those of ancient relict forests. As passive rewilding is the cheapest restoration method, we suggest that it should be a very useful tool to restore and conserve native forest biodiversity and functions, especially when forest areas are restricted and fragmented.

}, keywords = {Biodiversity, Ecosystem, Europe, Forests, Phylogeny}, issn = {1051-0761}, doi = {10.1002/eap.2007}, author = {Morel, Lo{\"\i}s and Barbe, Lou and Jung, Vincent and Cl{\'e}ment, Bernard and Schnitzler, Annik and Fr{\'e}d{\'e}ric Ysnel} } @article {7398, title = {Physical properties of epilithic river biofilm as a new lead to perform pollution bioassessments in overseas territories}, journal = {Scientific Reports}, volume = {10}, year = {2020}, month = {Jan-12-2020}, abstract = {Chlordecone (CLD) levels measured in the rivers of the French West Indies were among the highest values detected worldwide in freshwater ecosystems, and its contamination is recognised as a severe health, environmental, agricultural, economic, and social issue. In these tropical volcanic islands, rivers show strong originalities as simplified food webs, or numerous amphidromous migrating species, making the bioindication of contaminations a difficult issue. The objective of this study was to search for biological responses to CLD pollution in a spatially fixed and long-lasting component of the rivers in the West Indies: the epilithic biofilm. Physical properties were investigated through complementary analyses: friction, viscosity as well as surface adhesion were analyzed and coupled with measures of biofilm carbon content and exopolymeric substance (EPS) production. Our results have pointed out a mesoscale chemical and physical reactivity of the biofilm that can be correlated with CLD contamination. We were able to demonstrate that epilithic biofilm physical properties can effectively be used to infer freshwater environmental quality of French Antilles rivers. The friction coefficient is reactive to contamination and well correlated to carbon content and EPS production. Monitoring biofilm physical properties could offer many advantages to potential users in terms of effectiveness and ease of use, rather than more complex or time-consuming analyses.}, doi = {10.1038/s41598-020-73948-7}, url = {http://www.nature.com/articles/s41598-020-73948-7}, author = {Monti, Dominique and C{\'e}dric Hubas and Louren{\c c}o, Xavier and Begarin, Farid and Haouis{\'e}e, Alexandre and Romana, Laurence and Lefran{\c c}ois, Estelle and Jestin, Alexandra and Budzinski, H{\'e}l{\`e}ne and Tapie, Nathalie and Risser, Th{\'e}o and Mansot, Jean-Louis and Philippe Keith and Gros, Olivier and Pascal Jean Lopez and Lauga, B{\'e}atrice} } @article {7117, title = {Predicting species richness and abundance of tropical post-larval fish using machine learning}, journal = {Marine Ecology Progress Series}, volume = {645}, year = {2020}, month = {Sep-07-2020}, pages = {125 - 139}, abstract = {No previous studies predicted post-larval fish species richness and abundance combining molecular tools, machine learning, and past-days Remotely Sensed Oceanic Conditions (RSOCs) at different scales. Previous studies aimed at modeling species richness and abundance of marine fishes have mostly used environmental variables recorded locally during sampling. They have merely focused on juvenile and adult fishes due to the difficulty of obtaining accurate species richness estimates for post-larvae. The present work predicted post-larval species richness (identified using DNA barcoding) and abundance at two coastal sites in SW Madagascar using random forests (RF). RF models were fitted using combinations of local variables with RSOCs at a small-scale (eight days preceding fish sampling in a 50x120 km2\ area), mesoscale (sixteen past-days in 100x200 km2), and large-scale (twenty-four past-days in 200x300 km2). RF models combining local and small-scale RSOC variables predicted more accurately the species richness and abundance with around 70\% and 60\% accuracy, respectively. We observed a small variation of RF model performance in predicting species richness and abundance among all sites, highlighting the predictive RF model consistency. Moreover, partial dependence plots showed that high species richness and abundance were predicted for sea surface temperatures \<27.0{\textdegree}C and chlorophyll\ a\ concentrations \<0.22 mg m-3. Referring to temporal changes of these variables, these thresholds were solely observed from November to December. These results suggest that, in SW Madagascar, species richness and abundance of post-larval fish may only be predicted prior to the ecological impacts of tropical storms on larval settlement success.}, issn = {0171-8630}, doi = {10.3354/meps13385}, url = {https://www.int-res.com/abstracts/meps/v645/p125-139/}, author = {Jaonalison, H and Durand, JD and Mahafina, J and Demarcq, H and Teichert, Nils and Ponton, D} } @article {8391, title = {Premier signalement en France du Barbeau de Graells Luciobarbus graellsii (Steindachner, 1866) (Actinopterygii, Cypriniformes)}, journal = {Naturae}, year = {2020}, month = {Sep-12-2020}, doi = {10.5852/naturae2020a15}, url = {http://sciencepress.mnhn.fr/fr/periodiques/naturae/2020/15}, author = {MASSEBOEUF, Fabrice and Doadrio, Ignacio and Denys, Ga{\"e}l} } @article {7545, title = {Public Perceptions of Mangrove Forests Matter for Their Conservation}, journal = {Frontiers in Marine Science}, volume = {7}, year = {2020}, month = {Jul-11-2021}, abstract = {Iconic species and landscapes attract public attention to help reverse the degradation of ecosystems and their biodiversity (Thompson and Rog, 2019); sharing their images on social media can act as a powerful way to influence perceptions and drive positive actions by the public (Wu et al., 2018). Social media platforms such as Twitter, Facebook and Instagram have been used to great effect to communicate the urgency required to halt and reverse tropical forest loss (Lamb et al., 2005) and the plight of coral reefs (Curnock et al., 2019). Ecosystems such as seagrass meadows, mudflats, and mangrove forests receive substantially less media exposure (Duarte et al., 2008). Yet these under-recognized ecosystems are hugely important for local and global societies, providing benefits such as shoreline protection (Barbier, 2016), fisheries (Carrasquilla-Henao and Juanes, 2017), carbon capture and storage (Duarte et al., 2013), alongside supporting rich marine and terrestrial biodiversity (Sievers et al., 2019;\ Thompson and Rog, 2019) (Figure 1). Apart from these important ecosystem functions, goods and services, mangrove forests are home to a huge diversity of organisms with ecologically and evolutionarily unique adaptations to life in the intertidal zone, including vivipary and salt tolerance in trees, air-breathing in crabs and amphibious behavior in fish (mudskippers); this makes mangrove forests a dynamic and fascinating evolutionary laboratory.}, doi = {10.3389/fmars.2020.60365110.3389/fmars.2020.603651.s001}, url = {https://www.frontiersin.org/articles/10.3389/fmars.2020.603651/full}, author = {Dahdouh-Guebas, Farid and Ajonina, Gordon N. and Amir, A. Aldrie and Andradi-Brown, Dominic A. and Aziz, Irfan and Balke, Thorsten and Barbier, Edward B. and Cannicci, Stefano and Cragg, Simon M. and Cunha-Lignon, Mar{\'\i}lia and Curnick, David J. and Duarte, Carlos M. and Duke, Norman C. and Endsor, Charlie and Fratini, Sara and Feller, Ilka C. and Fromard, Fran{\c c}ois and Hug{\'e}, Jean and Huxham, Mark and Kairo, James G. and Kajita, Tadashi and Kathiresan, Kandasamy and Koedam, Nico and Lee, Shing Yip and Lin, Hsing-Juh and Mackenzie, Jock R. and Mangora, Mwita M. and Marchand, Cyril and Tarik Meziane and Minchinton, Todd E. and Pettorelli, Nathalie and Polan{\'\i}a, Jaime and Polgar, Gianluca and Poti, Meenakshi and Primavera, Jurgenne and Quarto, Alfredo and Rog, Stefanie M. and Satyanarayana, Behara and Schaeffer-Novelli, Yara and Spalding, Mark and Van der Stocken, Tom and Wodehouse, Dominic and Yong, Jean W. H. and Zimmer, Martin and Friess, Daniel A.} } @inbook {6862, title = {Partie 2 - M{\'e}thodologie}, booktitle = {Les oiseaux nicheurs du Nord et du Pas-de-Calais}, year = {2019}, pages = {488}, publisher = {Biotope}, organization = {Biotope}, edition = {Beaudoin C., Boutrouille C., Camberlein P., Godin J., Luczak C., Pischiutta R. \& Sueur F.}, address = {M{\`e}ze}, abstract = {Six ann{\'e}es d{\textquoteright}enqu{\^e}te de terrain mobilisant les ornithologues du nord de la France, adh{\'e}rents du Groupe ornithologique et naturaliste du Nord - Pas-de-Calais et partenaires de l{\textquoteright}association, ont {\'e}t{\'e} n{\'e}cessaires pour r{\'e}aliser cet ouvrage naturaliste de r{\'e}f{\'e}rence. Les + de cet ouvrage : Toutes les esp{\`e}ces d{\textquoteright}oiseaux nicheurs r{\'e}guliers, occasionnels et exceptionnels dans le Nord et le Pas-de-Calais sont pr{\'e}sent{\'e}es, sois 200 esp{\`e}ces ; La synth{\`e}se des connaissances ornithologiques relatives aux oiseaux nicheurs du nord de la France : effectifs, r{\'e}partition et {\'e}volution des populations au cours du demi-si{\`e}cle {\'e}coul{\'e} ; Une somme d{\textquoteright}informations in{\'e}dites issues de la compilation de plus de 230 000 donn{\'e}es ; Un {\'e}tat des menaces pesant sur l{\textquoteright}avifaune du Nord {\textemdash} Pas-de-Calais ; Un atlas illustr{\'e} de plus de 380 photos de terrain.}, issn = {978-2-36662-231-7}, url = {https://leclub-biotope.com/fr/librairie-naturaliste/1286-oiseaux-nicheurs-du-nord-et-du-pas-de-calais}, author = {Beaudouin, C{\'e}dric and Blaise, Claire and Goberville, Eric and Christophe Luczak and Pischiutta, Rudy} } @article {6932, title = {Partitioning of food resources among three sympatric scorpionfish (Scorpaeniformes) in coastal waters of the northern Yellow Sea}, journal = {Hydrobiologia}, volume = {826}, year = {2019}, month = {Jan-01-2019}, pages = {331 - 351}, issn = {0018-8158}, doi = {10.1007/s10750-018-3747-0}, url = {http://link.springer.com/10.1007/s10750-018-3747-0}, author = {Wu, Zhongxin and Zhang, Xiumei and Charlotte R. Dromard and Tweedley, James R. and Loneragan, Neil R.} } @article {6664, title = {Patterns of at-sea behaviour at a hybrid zone between two threatened seabirds}, journal = {Scientific Reports}, volume = {9}, year = {2019}, month = {Jan-12-2019}, doi = {10.1038/s41598-019-51188-8}, url = {http://www.nature.com/articles/s41598-019-51188-8}, author = {Austin, Rhiannon E. and Wynn, Russell B. and Votier, Stephen C. and Trueman, Clive and McMinn, Miguel and Rodr{\'\i}guez, Ana and Suberg, Lavinia and Maurice, Louise and Newton, Jason and Genovart, Meritxell and Clara P{\'e}ron and Gr{\'e}millet, David and Guilford, Tim} } @article {5954, title = {The phylogenetic origin and evolution of acellular bone in teleost fishes: insights into osteocyte function in bone metabolism}, journal = {Biological Reviews}, year = {2019}, abstract = {

ABSTRACT Vertebrate bone is composed of three main cell types: osteoblasts, osteoclasts and osteocytes, the latter being by far the most numerous. Osteocytes are thought to play a fundamental role in bone physiology and homeostasis, however they are entirely absent in most extant species of teleosts, a group that comprises the vast majority of bony {\textquoteleft}fishes{\textquoteright}, and approximately half of vertebrates. Understanding how this acellular (anosteocytic) bone appeared and was maintained in such an important vertebrate group has important implications for our understanding of the function and evolution of osteocytes. Nevertheless, although it is clear that cellular bone is ancestral for teleosts, it has not been clear in which specific subgroup the osteocytes were lost. This review aims to clarify the phylogenetic distribution of cellular and acellular bone in teleosts, to identify its precise origin, reversals to cellularity, and their implications. We surveyed the bone type for more than 600 fossil and extant ray-finned fish species and optimised the results on recent large-scale molecular phylogenetic trees, estimating ancestral states. We find that acellular bone is a probable synapomorphy of Euteleostei, a group uniting approximately two-thirds of teleost species. We also confirm homoplasy in these traits: acellular bone occurs in some non-euteleosts (although rarely), and cellular bone was reacquired several times independently within euteleosts, in salmons and relatives, tunas and the opah (Lampris sp.). The occurrence of peculiar ecological (e.g. anadromous migration) and physiological (e.g. red-muscle endothermy) strategies in these lineages might explain the reacquisition of osteocytes. Our review supports that the main contribution of osteocytes in teleost bone is to mineral homeostasis (via osteocytic osteolysis) and not to strain detection or bone remodelling, helping to clarify their role in bone physiology.

}, keywords = {acellular bone, Actinopterygii, ancestral state reconstruction, anosteocytic bone, bone remodelling, endothermy, osteocyte, Salmoniformes, Scombridae, teleostei}, doi = {10.1111/brv.12505}, url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/brv.12505}, author = {Davesne, Donald and Fran{\c c}ois J Meunier and Schmitt, Armin D. and Friedman, Matt and Otero, Olga and Benson, Roger B. J.} } @article {6041, title = {Phylog{\'e}ographie de Neritina stumpffi Boettger, 1890 et Neritina canalis Sowerby, 1825 (Gastropoda, Cycloneritida, Neritidae)}, journal = {Zoosystema}, volume = {41}, year = {2019}, pages = {237-248}, abstract = {

The population genetic structure of Neritina stumpffi Boettger, 1890 in the Indo-Pacific and Neritina canalis Sowerby, 1825 in the Pacific Ocean were investigated using a fragment of the mitochondrial COI gene. The haplotype network of N. stumpffi showed a genetic structuration between the two oceans, with shared haplotypes. Concerning N. canalis, western Pacific and central Pacific populations are genetically structured, without shared haplotypes. The Coral Triangle appears to have played a filtering barrier role for N. stumpffi, whose presence in both oceans could be explained by the flow of the south-equatorial current. A barrier to the dispersal of N. canalis between the western and the central Pacific may also exist.

}, keywords = {COI gene, Indian Ocean, larval dispersion, Pacific Ocean, Phylogeography}, author = {Ahmed Abdou and Clara Lord and Philippe Keith and Ren{\'e} Galzin} } @article {8555, title = {Population recovery changes population composition at a major southern Caribbean juvenile developmental habitat for the green turtle, Chelonia mydasAbstract}, journal = {Scientific Reports}, volume = {9}, year = {2019}, month = {Jan-12-2019}, doi = {10.1038/s41598-019-50753-5}, url = {http://www.nature.com/articles/s41598-019-50753-5}, author = {van der Zee, Jurjan P. and Christianen, Marjolijn J. A. and Nava, Mabel and Velez-Zuazo, Ximena and Hao, Wensi and B{\'e}rub{\'e}, Martine and van Lavieren, Hanneke and Hiwat, Michael and Berzins, Rachel and Chevalier, Johan and Chevallier, Damien and Lankester, Marie-Cl{\'e}lia and Bjorndal, Karen A. and Bolten, Alan B. and Becking, Leontine E. and Palsb{\o}ll, Per J.} } @article {6635, title = {A Potential Antineoplastic Peptide of Human Prostate Cancer Cells Derived from the Lesser Spotted Dogfish (Scyliorhinus canicula L.)}, journal = {Marine Drugs}, volume = {17}, year = {2019}, month = {Jan-10-2019}, pages = {585}, doi = {10.3390/md17100585}, url = {https://www.mdpi.com/1660-3397/17/10/585}, author = {Bosseboeuf, Adrien and Baron, Amandine and Duval, Elise and Aude Gautier and Pascal Sourdaine and Auvray, Pierr{\"\i}ck} } @article {5833, title = {{Prediction of unprecedented biological shifts in the global ocean}}, journal = {Nature Climate Change}, volume = {9}, year = {2019}, month = {mar}, pages = {237{\textendash}243}, abstract = {

Impermanence is an ecological principle1 but there are times when changes occur nonlinearly as abrupt community shifts (ACSs) that transform the ecosystem state and the goods and services it provides2. Here, we present a model based on niche theory3 to explain and predict ACSs at the global scale. We test our model using 14 multi-decadal time series of marine metazoans from zooplankton to fish, spanning all latitudes and the shelf to the open ocean. Predicted and observed fluctuations correspond, with both identifying ACSs at the end of the 1980s4,5,6,7 and 1990s5,8. We show that these ACSs coincide with changes in climate that alter local thermal regimes, which in turn interact with the thermal niche of species to trigger long-term and sometimes abrupt shifts at the community level. A large-scale ACS is predicted after 2014{\textemdash}unprecedented in magnitude and extent{\textemdash}coinciding with a strong El Ni{\~n}o event and major shifts in Northern Hemisphere climate. Our results underline the sensitivity of the Arctic Ocean, where unprecedented melting may reorganize biological communities5,9, and suggest an increase in the size and consequences of ACS events in a warming world.

}, issn = {1758-678X}, doi = {10.1038/s41558-019-0420-1}, url = {http://www.nature.com/articles/s41558-019-0420-1}, author = {Gr{\'e}gory Beaugrand and Alessandra Conversi and Angus Atkinson and Jim E. Cloern and Sanae Chiba and Serena Fonda-Umani and Richard R Kirby and Greene, C. H. and Goberville, Eric and Otto, S. A. and Philip Chris Reid and Stemmann, L. and Martin Edwards} } @article {7043, title = {Preliminary note on the morphological characters of penja (amphidromous goby postlarvae) in West Sulawesi and Gorontalo Bay}, journal = {IOP Conference Series: Earth and Environmental Science}, volume = {370}, year = {2019}, month = {Jan-11-2019}, pages = {012007}, abstract = {Penjais the local name for the postlarvae of fish belonging to the Gobioidei, whose appearance at certain times is an amphidromous migration process from the sea to rivers. This group of fish is generally referred to as amphidromous gobies. This study aimed toreveal some facts related to the species diversity of penja based on morphological characteristics. The study was conducted from October 2017 to March 2019 in West Sulawesi and Gorontalo Bay, Indonesia. Amphidromous goby samples at the penja(postlarval) stage were obtained from fishermen{\textquoteright}s catches and from traditional markets in each location. The samples obtained were measured and described based on morphological differences. The total length of the sampled penja ranged from 18 mm to 58 mm. All penja were identified as belonging to one of two families, the Gobiidae and Eleotridae. Although the species obtained from the waters of West Sulawesi and Gorontalo Bay were similar, there were variations in species composition (relative abundance) based on observed morphology of penja postlarvae from these two locations.}, doi = {10.1088/1755-1315/370/1/012007}, url = {https://iopscience.iop.org/article/10.1088/1755-1315/370/1/012007}, author = {Nurjirana and Haris, A and Sahami, F M and Philippe Keith and Burhanuddin, A I} } @article {6884, title = {Protein expression profiles in Bathymodiolus azoricus exposed to cadmium}, journal = {Ecotoxicology and Environmental Safety}, volume = {171}, year = {2019}, month = {Jan-04-2019}, pages = {621 - 630}, issn = {01476513}, doi = {10.1016/j.ecoenv.2019.01.031}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0147651319300399}, author = {Company, Rui and Ant{\'u}nez, Oreto and Cosson, Richard P. and Serafim, Angela and Bruce Shillito and Cajaraville, Miren and Bebianno, Maria Jo{\~a}o and Torreblanca, Amparo} } @article {5620, title = {Paraglacial coasts responses to glacier retreat and associated shifts in river floodplains over decadal timescales (1966-2016), Kongsfjorden, Svalbard}, journal = {Land Degradation and Development}, year = {2018}, abstract = {

The aim of this paper is to quantify and map the impact of the post-LIA climate change on the coastal evolution on three glacier catchments in the Kongsfjorden area in Svalbard. Climatic data of the meteorological station of Ny-{\r A}lesund indicate an increase in the annual mean air temperature of +4{\textdegree}C from 1969 to 2016 and an increase in precipitation. On the northern coast of the Br{\o}gger Peninsula, the Austre Lov{\'e}nbreen, Midtre Lov{\'e}nbreen and Vestre Lov{\'e}nbreen glaciers have experienced a net retreat in response to changing meteorological conditions. As a consequence of this retreat, the glaciers have disclosed a large area of 7 km{\texttwosuperior} composed of terrigenous sediments which is reworked by runoff and forms coastal sandur deltas. Channel network behavior has been studied using the computation of the active floodplain width by photo-interpretation, which decreased in average from 1966 to 2010. This demonstrated a contraction of the active braided belt and a decrease in the amount of braided channels. A photo-interpretation analysis combined with acquisition of dGPS data during field work shows a mean shoreline progradation of + 0.16 m/y from 1966 to 2016, with a maximal advance of + 82 m seaward. Since 1966 coastal progradation has decreased in time with higher mean values at the beginning of the studied period and an erosional trend from 1990. The sublittoral area was studied using analog side scan sonar in 2009, 2011 and 2012. Three pro-deltas were identified and underwent an extension of 30,000 m{\texttwosuperior} from 2009 to 2012. In the light of this knowledge, our main conclusion is that, by retreating, glaciers have an impact on the sediment availability and on the capacity of the fluvial system to effectively transport sediment to the shoreline. These two factors control the overall coastal evolution by regulating the sediment supply to the coastal area. The coastal zones that were fed with sediments by runoff have experienced a coastal progradation and those that lost this supply have undergone a coastal recession. Due to the contraction of proglacial floodplains, current progradation concerns restricted coastal areas.

}, doi = {10.1002/ldr.3149}, author = {Marine Bourriquen and Agn{\`e}s Baltzer and Denis Mercier and J{\'e}r{\^o}me Fournier and St{\'e}phane Costa and Erwan Roussel} } @article {7852, title = {Partial migration in inexperienced pied avocets Recurvirostra avosetta : distribution pattern and correlates}, journal = {Journal of Avian Biology}, volume = {49}, year = {2018}, month = {Jan-06-2018}, doi = {10.1111/jav.01549}, url = {http://doi.wiley.com/10.1111/jav.01549}, author = {Chambon, R{\'e}mi and Dugravot, S{\'e}bastien and Paillisson, Jean-Marc and Lemesle, Jean-Christophe and Fr{\'e}d{\'e}ric Ysnel and G{\'e}linaud, Guillaume} } @book {5650, title = {Peces de consumo de la Amazon{\'\i}a Peruana}, year = {2018}, pages = {218}, edition = {Instituto de Investigaciones de la Amazon{\'\i}a Peruana (IIAP), Iquitos, Per{\'u}}, author = {Garc{\'\i}a-D{\'a}vila, C and Sanchez, H. and Flores, M and Mejia, J. and Angulo, C. and Castro-Ruiz, D. and Estivals, G. and Garcia, Aurea and Vargas, G. and Nolorbe, C. and Jesus Nu{\~n}ez-Rodriguez and Mariac, C{\'e}dric and Fabrice Duponchelle and Renno, Jean-Francois} } @book {7107, title = {Photoperiodism in Fish}, series = {Encyclopedia of Reproduction}, year = {2018}, pages = {400 - 408}, publisher = {Elsevier}, organization = {Elsevier}, isbn = {9780128151457}, doi = {10.1016/B978-0-12-809633-8.20584-0}, url = {https://linkinghub.elsevier.com/retrieve/pii/B9780128096338205840}, author = {Jack Falcon and Zohar, Yonathan} } @article {5925, title = {Phylogeography of Eleotris fusca (Teleostei: Gobioidei: Eleotridae) in the Indo-Pacific area reveals a cryptic species in the Indian Ocean.}, journal = {Conservation genetics}, volume = {19}, year = {2018}, pages = {1025-1038}, abstract = {

\ Indo-Pacific insular freshwater systems are mainly dominated by amphidromous species. Eleotris fusca\  is a widespread one, its life cycle is characterised by a marine pelagic larval phase allowing the species to disperse in the ocean and then to recruit to remote island rivers. In the present study, the population structure of E. fusca\  over its Indo-Pacific distribution range (Western Indian Ocean to French Polynesia, Pacific Ocean) was evaluated. We analysed a section of mitochondrial COI\  of 557 individuals sampled from 28 islands to visualise the population structure. Haplotypes diversity (Hd) was between 0.458 and 1 and, nucleotide diversity (π) was between 0.001 and 0.02. Two distinct genetic groups appeared, one in the Indian Ocean and the other in the Pacific Ocean (FST\  mean = 0.901; 5.2\% average divergence). Given these results, complete mitogenomes (mtDNA) were sequenced and combined with the nuclear Rhodopsin (Rh) gene for a subset of individuals. The two phylogenetic trees based on each analysis showed the same genetic pattern: two different groups belonging to the Indian and the Pacific oceans (6.6 and 1.6\% of divergence for mtDNA and Rh gene respectively), which supported species level differentiation. These analyses revealed the presence of two sister species confounded until present under the name of Eleotris fusca. One of them is cryptic and endemic of the Indian Ocean and the other one is the true E. fusca, which keeps, nevertheless, its status of widespread species.

}, keywords = {Amphidromous, Complete mitogenome, freshwater fish, Nuclear gene}, author = {Marion Mennesson and Bonillo, C{\'e}line and Eric Feunteun and Philippe Keith} } @article {8406, title = {Platichthys solemdali sp. nov. (Actinopterygii, Pleuronectiformes): A New Flounder Species From the Baltic SeaImage_1.tifTable_1.DOCX}, journal = {Frontiers in Marine Science}, volume = {5}, year = {2018}, month = {Nov-07-2018}, doi = {10.3389/fmars.2018.0022510.3389/fmars.2018.00225.s00110.3389/fmars.2018.00225.s002}, url = {https://www.frontiersin.org/article/10.3389/fmars.2018.00225/full}, author = {Momigliano, Paolo and DENYS, Ga{\"e}l P. J. and Jokinen, Henri and Meril{\"a}, Juha} } @article {5631, title = {Population dynamics of Prochilodus nigricans (Characiformes: Prochilodontidae) in the Putumayo River}, journal = {Neotropical Ichthyology}, volume = {16}, year = {2018}, pages = {e170139}, abstract = {

The black prochilodus (Prochilodus nigricans) is one of the most landed scaled fish species of the middle and upper parts of the Putumayo River, in the tri-national area between Colombia, Ecuador and Peru. Despite its importance, biological information about this species is too scant to guide fisheries management in this portion of the Colombian Amazon. In this study, 10884 individuals were sampled in the fish markets of Puerto Legu{\'\i}zamo between 2009 and 2017. This sampling was used to document reproductive patterns, but also growth and mortality parameters from length frequency distributions. The size at which all fish were mature was 22 cm Ls, which should be the established as the minimum size of capture to ensure that all fish have had a chance to reproduce before being caught. Growth and mortality parameters indicated a slower growth in the Putumayo than in other Amazonian rivers and a relatively high exploitation rate.

Keywords:\ Black prochilodus; Colombia; Growth; Mortality; Reproduction

}, doi = {http://dx.doi.org/10.1590/1982-0224-20170139}, author = {Bonilla-Castillo, C S and Agudelo C{\'o}rdoba, E and G{\'o}mez, G and Fabrice Duponchelle} } @article {6799, title = {Predicting krill swarm characteristics important for marine predators foraging off East Antarctica}, journal = {Ecography}, volume = {41}, year = {2018}, pages = {996 - 1012}, issn = {0906-7590}, url = {https://onlinelibrary.wiley.com/doi/full/10.1111/ecog.03080}, author = {Bestley, Sophie and Raymond, Ben and Gales, NJ and Harcourt, RG and Hindell, Mark A and Jonsen, ID and Nicol, S and Clara P{\'e}ron and Sumner, MD and Weimerskirch, H. and Wotherspoon, S. and Cox, MJ} } @article {5919, title = {Predominance of phytoplankton-derived dissolved and particulate organic carbon in a highly eutrophic tropical coastal embayment (Guanabara Bay, Rio de Janeiro, Brazil)}, journal = {Biogeochemistry}, volume = {137}, year = {2018}, pages = {1{\textendash}14}, doi = {10.1007/s10533-017-0405-y}, url = {https://doi.org/10.1007/s10533-017-0405-y}, author = {Luiz C. Cotovicz and Bastiaan A. Knoppers and Nilva Brandini and Dominique Poirier and Suzan J. Costa Santos and Renato C. Cordeiro and Gwena{\"e}l Abril} } @article {8407, title = {Presence of larvae of lampreys, Lampetra sp. (Cephalaspidomorphi, Petromyzontiformes), in a French Catalan basin}, journal = {Cybium}, volume = {42}, year = {2018}, pages = {216-218}, abstract = {Des ammoc{\`e}tes de lamproies ont {\'e}t{\'e} r{\'e}cemment captur{\'e}es pour la premi{\`e}re fois dans un cours d{\textquoteright}eau de Catalogne fran{\c c}aise, la T{\^e}t. Les identifications morphologique et mol{\'e}culaire ont d{\'e}montr{\'e} que ces ammoc{\`e}tes appartiennent au complexe [Lampetra fluviatilis / Lampetra planeri]. Les lamproies et leurs fray{\`e}res {\'e}tant prot{\'e}g{\'e}es en France, cette {\'e}tude aura une incidence sur la gestion du cours d{\textquoteright}eau de la T{\^e}t.}, author = {Arsento, R{\'e}my and Richarte, K{\'e}vin and Fonteneau, Andr{\'e} and Denys, Ga{\"e}l} } @article {6857, title = {Processus morphodynamiques et s{\'e}dimentaires dans les mangroves en {\'e}rosion de Mayotte, oc{\'e}an Indien}, journal = {VertigO}, year = {2018}, month = {May-09-2018}, doi = {10.4000/vertigo10.4000/vertigo.2039110.4000/vertigo.20531}, url = {http://journals.openedition.org/vertigo}, author = {Jeanson, Matthieu and Franck Dolique and Anthony, Edward~J.} } @article {6902, title = {The Pax gene family: Highlights from cephalopods}, journal = {PLOS ONE}, volume = {12}, year = {2017}, month = {Feb-03-2017}, pages = {e0172719}, doi = {10.1371/journal.pone.017271910.1371}, url = {https://dx.plos.org/10.1371/journal.pone.0172719}, author = {Navet, Sandra and Buresi, Auxane and S{\'e}bastien Baratte and Aude Andouche and Laure Bonnaud-Ponticelli and Yann Bassaglia}, editor = {Schubert, Michael} } @article {7900, title = {Is personality of young fish consistent through different behavioural tests?}, journal = {Applied Animal Behaviour Science}, volume = {194}, year = {2017}, month = {Jan-09-2017}, pages = {127 - 134}, abstract = {Most studies carried out on personality recognized that personality is defined by behavioural traits consistent through time and/or contexts. In\ fish, most studies on personality were performed either on juveniles (aged between 6 months and 1 year) or adults, but very few focused on the early life stages. The main goal of this study is to characterize behavioural syndromes and to highlight the existence of a personality in young juvenile pikeperch, a species with a strong economic value. To study the consistency of behavioural responses of juvenile (50 and 64 days post-hatch) pikeperch\ Sander lucioperca\ (n = 41, total length = 5.8 {\textpm} 1.0 cm and mass = 1.6 {\textpm} 0.7 g), we performed three tests per\ fish in one day: exploration (cross-maze), dyadic and restraint test. In the cross-maze test, exploratory\ fish were more active and bolder. In the dyadic test,\ fish with the highest number of contacts, showed also more approaches, orientations and avoidance behaviours. In the restraint test, bolder\ fish were more active and tried to escape more often. Consequently, the investigation of the different behavioural responses of each\ fish highlighted behavioural syndromes in this species. Furthermore, for the\ first time, we showed, with a cross-context analysis, that young juvenile pikeperch, responded in the same way to exploration and dyadic test but their responses were opposite in the restraint test. Our results opened new opportunities for testing individual personality in very young\ fish that may help solving some aquaculture problems, such as intra-cohort cannibalism.}, keywords = {Behavioural syndromes, behavioural tests, Individual personality, Pikeperch juveniles, Sander lucioperca}, issn = {01681591}, doi = {10.1016/j.applanim.2017.05.012}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0168159117301545}, author = {Tatiana Colchen and Faux, E. and Teletchea, F. and Pasquet, A.} } @article {4687, title = {Phylogeography of the reef-building polychaetes of the genus Phragmatopoma in the western Atlantic Region}, journal = {Journal of Biogeography}, volume = {44}, year = {2017}, month = {06/2017}, pages = {1612-1625}, abstract = {

Aim

To verify the synonymy of the reef-building polychaete Phragmatopoma caudata (described for the Caribbean) and Phragmatopoma lapidosa (described for Brazil) using molecular data. To evaluate the patterns of genetic diversity and connectivity among populations from Florida to South Brazil.

Location

Intertidal zone in the western Atlantic biogeographical Region: Brazil, eastern Caribbean and Florida (USA).

Methods

DNA sequence data from one mitochondrial (cox-1) and one nuclear ribosomal (ITS-1) loci were obtained from 11 populations of P. caudata spanning the coasts of Brazil, eastern Caribbean and Florida. Phylogenetic relationships among populations of P. caudata and other members of the genus were inferred by Bayesian methods. Population differentiation was evaluated by Bayesian analysis of population structure (baps), AMOVA and pairwise φst. Demographic history was inferred by Bayesian skyline plots.

Results

Phylogenetic inference supported the interpretation of a single species of Phragmatopoma spanning the Brazilian and Caribbean Provinces of the western Atlantic Region. Little population structure was observed across the species distribution, with the exception of the Florida population. The baps analysis supported a 2-population model, with population differentiation being strong and significant between Florida and all other Atlantic populations for cox-1, and significant between Florida and most populations for ITS-1. Differences in genetic diversity were not significant between Caribbean and Brazilian populations, although several populations in Brazil had low values for diversity indices. Bayesian skyline plots indicate population expansion starting at c.\ 200\ ka.

Main conclusions

Phragmatopoma caudata is able to maintain genetic connectivity across most of its geographical range, with population differentiation being observed only between Florida and all other localities, possibly due to ecological speciation in the transition zone between tropical and subtropical environments. Long-distance connectivity across much of the species range is likely the result of long-lived larvae that are tolerant to a wide range of environmental conditions.

}, doi = {10.1111/jbi.12938}, author = {Flavia Nunes and Alain Van Wormhoudt and Larisse Faroni Perez and J{\'e}r{\^o}me Fournier} } @article {4341, title = {Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms}, journal = {Environmental Microbiology}, volume = {19}, year = {2017}, month = {5}, pages = {909-925}, abstract = {

Salinity regimes in estuaries and coastal areas vary with river discharge patterns, seawater evaporation, the morphology of the coastal waterways, and the dynamics of marine water mixing. Therefore, microalgae have to respond to salinity variations at time scales ranging from daily to annual cycles. Microalgae may also have to adapt to physical alterations that induce the loss of connectivity between habitats and the enclosure of bodies of water. Here, we integrated physiological assays and measurements of morphological plasticity with a functional genomics approach to examine the regulatory changes that occur during the acclimation to salinity in the estuarine diatom Thalassiosira weissflogii. We found that cells exposed to different salinity regimes for a short or long period presented adjustments in their carbon fractions, silicon pools, pigment concentrations and/or photosynthetic parameters. Salinity-induced alterations in frustule symmetry were observed only in the long-term cultures. Whole transcriptome analyses revealed a down-regulation of nuclear and plastid encoded genes during the long-term response and identified only a few regulated genes that were in common between the short- and long-term responses. We propose that in diatoms, one strategy for acclimating to salinity gradients and maintaining optimal cellular fitness could be a reduction in the cost of transcription. This article is protected by copyright. All rights reserved.

}, issn = {1462-2920}, doi = {10.1111/1462-2920.13398}, url = {http://dx.doi.org/10.1111/1462-2920.13398}, author = {Adrien Bussard and Corre, Erwan and C{\'e}dric Hubas and Duvernois-Berthet, Evelyne and Gildas Le Corguille and Jourdren, Laurent and Coulpier, Fanny and Pascal Claquin and Pascal Jean Lopez} } @article {5023, title = {The {\textquotedblleft}Pinocchio-shrimp effect{\textquotedblright}: first evidence of variation in rostrum length with the environment in Caridina H. Milne-Edwards, 1837 (Decapoda: Caridea: Atyidae)}, journal = {Journal of Crustacean Biology}, volume = {37}, year = {2017}, month = {05/2017}, pages = {243-248}, abstract = {

External morphology has always been the first criterion used to separate species of shrimps,

especially in the freshwater genus Caridina H. Milne-Edwards, 1837, but more doubts have been

expressed regarding the relevance of some of the morphological characters. We collected 27

specimens of Caridina from seven different localities during field work conducted on the island

of Pohnpei (Federated States of Micronesia). After genetic verification that they all belonged to

the same species, 19 morphological variables were measured and correlated with the elevation

of the collecting stations using correlation analyses. We provide evidence that the length of the

rostrum showed strong negative correlation with the elevation. This could be explained either

by the physical stress exerted on the rostrum by the stronger water currents in the stations at a

higher elevation, as a defence against predators in the lower stations, or a combination of both

possibilities. The taxonomy of these shrimps is thus challenging and should not rely only on

rostrum length, but on other characters such as the number of teeth on the dorsal margin of

the carapace, which is not correlated with rostrum length and therefore, with the environment.

}, keywords = {correlation analysis, effect of elevation, freshwater shrimps, Micronesia, morphology, taxonomy}, author = {de Mazancourt, Valentin and Marquet, G{\'e}rard and Philippe Keith} } @article {5175, title = {Pollution at Cohana Bay, Lake Titicaca (Bolivia): challenges and opportunities to promote its recovery}, journal = {Ecología en Bolivia}, volume = {52}, year = {2017}, month = {September 2017}, pages = {65-76}, issn = {1605-2528}, author = {Molina, Carlos I and Lazzaro, Xavier and Gu{\'e}dron, S and Dar{\'\i}o Ach{\'a}} } @article {5285, title = {Present and future distribution of three aquatic plants taxa across the world: decrease in native and increase in invasive ranges}, journal = {Biological Invasions}, volume = {19}, year = {2017}, month = {04/2017}, pages = {2159-2170}, abstract = {

Inland aquatic ecosystems are vulnerable to both climate change and biological invasion at broad spatial scales. The aim of this study was to establish the current and future potential distribution of three invasive plant taxa, Egeria densa, Myriophyllum aquaticum and Ludwigia spp., in their native and exotic ranges. We used species distribution models (SDMs), with nine different algorithms and three global circulation models, and we restricted the suitability maps to cells containing aquatic ecosystems. The current bioclimatic range of the taxa was predicted to represent 6.6{\textendash}12.3\% of their suitable habitats at global scale, with a lot of variations between continents. In Europe and North America, their invasive ranges are predicted to increase up to two\ fold by 2070 with the highest gas emission scenario. Suitable new areas will mainly be located to the north of their current range. In other continents where they are exotic and in their native range (South America), the surface areas of suitable locations are predicted to decrease with climate change, especially for Ludwigia spp. in South America (down to -55\% by 2070 with RCP 8.5 scenario). This study allows to identify areas vulnerable to ongoing invasions by aquatic plant species and thus could help the prioritisation of monitoring and management, as well as contribute to the public awareness regarding biological invasions.

}, doi = {10.1007/s10530-017-1428-y}, url = {https://link.springer.com/article/10.1007/s10530-017-1428-y}, author = {Gillard, Morgane and Thi{\'e}baut, Gabrielle and Deleu, Carole and Leroy, Boris} } @article {4860, title = {Proteomic response of Macrobrachium rosenbergii hepatopancreas exposed to chlordecone: Identification of endocrine disruption biomarkers?}, journal = {Ecotoxicology and Environmental Safety}, volume = {141}, year = {2017}, pages = {306-314}, author = {Lafontaine, Anne and Baiwir, Dominique and Joaquim-Justo, C{\'e}lia and de Pauw, Edwin and Lemoine, Soazig and Boulang{\'e}-Lecomte, C{\'e}line and Jo{\"e}lle Forget-Leray and Thom{\'e}, Jean-Pierre and Gismondi, Eric} } @article {5147, title = {Parabothus rotundifrons (Pleuronectiformes: Bothidae), a new bothid flatfish from Saya de Malha Bank (Indian Ocean)}, journal = {Cybium}, volume = {40}, year = {2016}, pages = {275{\textendash}280}, abstract = {

Abstract.{\textendash}nine species of Parabothus are currently recognized. A new bothid flatfish, Parabothus rotundifrons, is described from six specimens. it is considered as a species of Parabothus because of caudal skeleton structure, moderate width of concave interorbital space in male and moderate body depth in both male and female. P. rotundifrons is easily separable from other congeners by having a lowest number of scales in the lateral line (48- 58), biserial teeth on the upper jaw, steep dorsal profile of the head, 8-9 non-serrate gill ...

}, author = {Voronina, Elena and Patrice Pruvost and Causse, Romain} } @article {4597, title = {Parental influence in relation to growth and survival in larval families of Doncella Pseudoplatystoma punctifer}, journal = {Folia Amaz{\'o}nica}, volume = {25}, year = {2016}, pages = {77-82}, author = {Castro-Ruiz, D and Baras, Etienne and Fern{\'a}ndez, C and Sophie Qu{\'e}rouil and Chota-Macuyama, Werner and F. Duponchelle and Renno, J-F and Darias, Maria and Garc{\'\i}a-D{\'a}vila, C and Jesus Nu{\~n}ez-Rodriguez} } @article {4516, title = {Photosystem-II shutdown evolved with Nitrogen fixation in the unicellular diazotroph Crocosphaera watsonii.}, journal = {Environ Microbiol}, volume = {18}, year = {2016}, month = {2016 Feb}, pages = {477-85}, abstract = {

Protection of nitrogenase from oxygen in unicellular Cyanobacteria is obtained by temporal separation of photosynthesis and diazotrophy through transcriptional and translational regulations of nitrogenase. But diazotrophs can face environmental situations in which N2 fixation occurs significantly in the light, and we believe that another control operates to make it possible. The night-time shutdown of PSII activity is a peculiar behaviour that discriminates Crocosphaera watsonii WH8501 from any other phototroph, whether prokaryote or eukaryote. This phenomenon is not only due to the plastoquinone pool redox status, and suggests that the sentinel D1 protein, expressed in periods of nitrogen fixation, is inactive. Results demonstrate a tight constraint of oxygen evolution in C. watsonii as additional protection of nitrogenase activity and suggest a possible recycling of cellular components.

}, issn = {1462-2920}, doi = {10.1111/1462-2920.13157}, author = {Rabouille, Sophie and Pascal Claquin} } @article {4261, title = {Picophytoplankton contribution to Mytilus edulis growth in an intensive culture environment}, journal = {Marine Biology}, volume = {163}, year = {2016}, pages = {1{\textendash}15}, issn = {1432-1793}, doi = {10.1007/s00227-016-2845-7}, url = {http://dx.doi.org/10.1007/s00227-016-2845-7}, author = {R{\'e}mi Sonier and Filgueira, R. and Guyondet, T. and R{\'e}jean Tremblay and Fr{\'e}d{\'e}ric Olivier and Tarik Meziane and Starr, M. and LeBlanc, A. R. and Comeau, L. A.} } @article {7178, title = {Planktonic foraminiferal biogeography in the Indian sector of the Southern Ocean: Contribution from CPR data}, journal = {Deep Sea Research Part I: Oceanographic Research Papers}, volume = {110}, year = {2016}, month = {Jan-04-2016}, pages = {75 - 89}, issn = {09670637}, doi = {10.1016/j.dsr.2015.12.014}, url = {https://linkinghub.elsevier.com/retrieve/pii/S0967063716300280}, author = {Meilland, Julie and Fabri-Ruiz, Salom{\'e} and Koubbi, Philippe and Monaco, Claire Lo and Cott{\'e}, C{\'e}dric and Hosie, Graham W. and Sanchez, Sophie and Howa, H{\'e}l{\`e}ne} } @article {6823, title = {Plasticity and acquisition of the thermal tolerance (upper thermal limit and heat shock response) in the intertidal species Palaemon elegans}, journal = {Journal of Experimental Marine Biology and Ecology}, volume = {484}, year = {2016}, pages = {39 - 45}, abstract = {The marine species sensitivity to climate change will depend on the ways by which these species can adapt to thermal increase and heterogeneity. Here, we present evidence that the intertidal shrimp Palaemon elegans acclimates its thermal tolerance, in response to environmental water temperature, through a significant shift of its upper thermal limit with no concomittant acclimation of the heat shock response (hsp70 stress gene expression threshold). This species is less thermotolerant than its congener Palaemonetes varians, and would therefore potentially be more sensitive to an increase in environmental temperature, such as imposed by global warming. In P. elegans life cycle, physiological adjustments like the shift of the thermal limit and the acquisition of a significant HSR, occurred during the metamorphosis from larvae to post-larvae. This suggests that this step is a genetically-programmed milestone in the process of thermal tolerance acquisition.}, keywords = {acclimation, Caridea, Development, heat stress, hsp70, thermal biology}, issn = {0022-0981}, doi = {https://doi.org/10.1016/j.jembe.2016.07.003}, url = {http://www.sciencedirect.com/science/article/pii/S0022098116301125}, author = {Juliette Ravaux and L{\'e}ger, Nelly and Rabet, Nicolas and Fourgous, Claire and Voland, Guillaume and Magali Zbinden and Bruce Shillito} } @article {4372, title = {Pollen limitation may be a common Allee effect in marine hydrophilous plants: implications for decline and recovery in seagrasses}, journal = {Oecologia}, year = {2016}, pages = {1-15}, doi = {10.1007/s00442-016-3665-7}, author = {B.I. Van Tussenbroek and L.M. Soissons and T.J. Bouma and R. Asmus and I. Auby and F.G. Brun and P.G. Cardoso and Nicolas Desroy and J{\'e}r{\^o}me Fournier and F. Ganthy and J.M. Garmendia and Laurent Godet and T.F. Grilo and P. Kadel and B. Ondiviela and G. Peralta and M. Recio and M. Valle and T. Van der Heide and van Katwijk, M M} } @article {4677, title = {Present-day African analogue of a pre-European Amazonian floodplain fishery shows convergence in cultural niche construction}, journal = {Proceedings of the National Academy of Sciences}, year = {2016}, abstract = {

Erickson [Erickson CL (2000) Nature 408 (6809):190{\textendash}193] interpreted features in seasonal floodplains in Bolivia{\textquoteright}s Beni savannas as vestiges of pre-European earthen fish weirs, postulating that they supported a productive, sustainable fishery that warranted cooperation in the construction and maintenance of perennial structures. His inferences were bold, because no close ethnographic analogues were known. A similar present-day Zambian fishery, documented here, appears strikingly convergent. The Zambian fishery supports Erickson{\textquoteright}s key inferences about the pre-European fishery: It allows sustained high harvest levels; weir construction and operation require cooperation; and weirs are inherited across generations. However, our comparison suggests that the pre-European system may not have entailed intensive management, as Erickson postulated. The Zambian fishery{\textquoteright}s sustainability is based on exploiting an assemblage dominated by species with life histories combining high fecundity, multiple reproductive cycles, and seasonal use of floodplains. As water rises, adults migrate from permanent watercourses into floodplains, through gaps in weirs, to feed and spawn. Juveniles grow and then migrate back to dry-season refuges as water falls. At that moment fishermen set traps in the gaps, harvesting large numbers of fish, mostly juveniles. In nature, most juveniles die during the first dry season, so that their harvest just before migration has limited impact on future populations, facilitating sustainability and the adoption of a fishery based on inherited perennial structures. South American floodplain fishes with similar life histories were the likely targets of the pre-European fishery. Convergence in floodplain fish strategies in these two regions in turn drove convergence in cultural niche construction.

}, doi = {10.1073/pnas.1613169114}, url = {http://www.pnas.org/content/early/2016/12/09/1613169114.abstract}, author = {McKey, Doyle B. and Dur{\'e}cu, M{\'e}lisse and Marc Pouilly and Bearez, Philippe and Ovando, Alex and Kalebe, Mashuta and Carl F. Huchzermeyer} } @article {4056, title = {Parental exposure to the herbicide diuron results in oxidative DNA damage to germinal cells of the Pacific oyster Crassostrea gigas.}, journal = {Comp Biochem Physiol C Toxicol Pharmacol}, year = {2015}, month = {2015 Nov 21}, abstract = {

Chemical pollution by pesticides has been identified as a possible contributing factor to the massive mortality outbreaks observed in Crassostrea gigas for several years. A previous study demonstrated the vertical transmission of DNA damage by subjecting oyster genitors to the herbicide diuron at environmental concentrations during gametogenesis. This trans-generational effect occurs through damage to genitor-exposed gametes, as measured by the comet-assay. The presence of DNA damage in gametes could be linked to the formation of DNA damage in other germ cells. In order to explore this question, the levels and cell distribution of the oxidized base lesion 8-oxodGuo were studied in the gonads of exposed genitors. High-performance liquid chromatography coupled with UV and electrochemical detection analysis showed an increase in 8-oxodGuo levels in both male and female gonads after exposure to diuron. Immunohistochemistry analysis showed the presence of 8-oxodGuo at all stages of male germ cells, from early to mature stages. Conversely, the oxidized base was only present in early germ cell stages in female gonads. These results indicate that male and female genitors underwent oxidative stress following exposure to diuron, resulting in DNA oxidation in both early germ cells and gametes, such as spermatozoa, which could explain the transmission of diuron-induced DNA damage to offspring. Furthermore, immunostaining of early germ cells seems indicates that damages caused by exposure to diuron on germ line not only affect the current sexual cycle but also could affect future gametogenesis.

}, issn = {1532-0456}, doi = {10.1016/j.cbpc.2015.11.002}, author = {Barranger, Audrey and Clothilde Heude-Berthelin and Rouxel, Julien and Adeline, B{\'e}atrice and Benabdelmouna, Abdellah and Burgeot, Thierry and Akcha, Farida} } @article {4397, title = {Periodic life history strategy of Psectrogaster rutiloides, Kner 1858, in the Iquitos~region, Peruvian Amazon}, journal = {Journal of Applied Ichthyology}, volume = {31}, year = {2015}, pages = {31{\textendash}39}, issn = {1439-0426}, doi = {10.1111/jai.12974}, url = {http://dx.doi.org/10.1111/jai.12974}, author = {Garc{\'\i}a-Vasquez, Aurea and Vargas, Gladys and S{\'a}nchez, H and Salvador Tello and Fabrice Duponchelle} } @article {4158, title = {Photosystem-II shutdown evolved with Nitrogen fixation in the unicellular diazotroph Crocosphaera watsonii.}, journal = {Environ Microbiol}, year = {2015}, month = {2015 Dec 7}, abstract = {

Protection of nitrogenase from oxygen in unicellular cyanobacteria is obtained by temporal separation of photosynthesis and diazotrophy, through transcriptional and translational regulations of nitrogenase. But diazotrophs can face environmental situations in which N2 fixation occurs significantly in the light, and we believe that another control operates to make it possible. The nighttime shutdown of PSII activity is a peculiar behavior that discriminates C. watsonii WH8501 from any other phototroph, whether prokaryote or eukaryote. This phenomenon is not only due to the plastoquinone pool redox status and suggests that the sentinel D1 protein, expressed in periods of nitrogen fixation, is inactive. Results demonstrate a tight constraint of oxygen evolution in C. watsonii as additional protection of nitrogenase activity and suggest a possible recycling of cellular components.

}, issn = {1462-2920}, doi = {10.1111/1462-2920.13157}, author = {Rabouille, Sophie and Claquin, Pascal} } @article {4098, title = {Population structure of the Asian amphidromous Sicydiinae goby, Stiphodon percnopterygionus with comments on larval dispersal in the northwest Pacific Ocean. }, journal = {Life and Environment}, volume = {65}, year = {2015}, pages = {63-71}, keywords = {amphidromy, larval dispersal, POPULATION STRUCTURE, Sicydiinae, Stiphodon}, author = {Clara Lord and Maeda, Ken and Philippe Keith and Watanabe, S} } @article {4019, title = {Population structure of the Asian amphidromous Sicydiinae goby, Stiphodon percnopterygionus with comments on larval dispersal in the northwest Pacific Ocean.}, journal = {Life and Environment,}, volume = { 65}, year = {2015}, pages = {63-71}, keywords = {amphidromy, Larval dispersa, Population structure., Sicydiinae, Stiphodon}, author = {Clara Lord and Maeda, Ken and Philippe Keith and Watanabe, S} } @article {6880, title = {The potential for climate-driven bathymetric range shifts: sustained temperature and pressure exposures on a marine ectotherm, Palaemonetes varians}, journal = {Royal Society Open Science}, volume = {2}, year = {2015}, month = {Jan-11-2015}, pages = {150472}, issn = {2054-5703}, doi = {10.1098/rsos.150472}, url = {https://royalsocietypublishing.org/doi/10.1098/rsos.150472}, author = {Morris, J. P. and Thatje, S. and Cottin, D. and Oliphant, A. and Brown, A. and Bruce Shillito and Juliette Ravaux and Hauton, C.} } @article {4159, title = {Production of exopolymers (EPS) by cyanobacteria: impact on the carbon-to-nutrient ratio of the particulate organic matter}, journal = {Aquatic Ecology}, year = {2015}, pages = {1-16}, abstract = {

Freshwater cyanobacteria can produce large amount of mucilage, particularly during large blooms. The production of these carbon-rich exopolymers (EPS) should influence the carbon-to-nutrient ratios of the organic matter (OM), which are regularly used as a proxy for the herbivorous food quality. However, little is known about the consequences of EPS production on the carbon-to-nutrient ratio of the OM. Two EPS forms can be distinguished: the free fraction composed of soluble extracellular polymeric substances (S-EPS) and the particulate fraction corresponding to the transparent exopolymer particles (TEP). The aim of the study was to determine whether the TEP and S-EPS productions by cyanobacteria influence the carbon-to-nutrient ratios of the particulate OM (POM). Five cyanobacteria species were grown in batch culture and characterized in terms of photosynthetic activity, EPS production, and C, N, P
contents. The variability in EPS production was compared with the variability in stoichiometry of the POM. Most of cyanobacteria live in association with
heterotrophic bacteria (HB) within the mucilage. The effect of the presence/absence of HB on EPS production and the carbon-to-nutrient ratios of the POM was also characterized for the cyanobacteria Microcystis aeruginosa. We showed that TEP production increased the carbon-to-nutrient ratios of the POM in
the absence of HB, while the stoichiometry did not significantly change when HB were present. The C:N ratio of the POM decreased with production of\  S-EPS by the five species. Lastly, the three colonial species (Chroococcales) tend to produce more TEP than the two filamentous species (Oscillatoriales), with the two picocyanobacteria being the most productive of both TEP and S-EPS.

}, author = {Pannard, A and P{\'e}dronon, J and Bormans, M and Briand, E and Pascal Claquin and Yvan Lagadeuc} } @article {5053, title = {Parasitic chytrids sustain zooplankton growth during inedible algal bloom}, journal = {Frontiers in microbiology}, volume = {5}, year = {2014}, author = {Rasconi, S and Grami, Boutheina and Nathalie Niquil and Jobard, Marl{\`e}ne and Sime-Ngando, T} } @book {3281, title = {Peces de Bolivia/Bolivian Fishes}, year = {2014}, pages = {211 pages}, publisher = {Plural editores}, organization = {Plural editores}, address = {La Paz, Bolivia}, abstract = {

Desde la última década, el creciente interés por parte de científicos y autoridades nacionales ha dado lugar a avances considerables en el conocimiento de los peces de Bolivia, llegando a una lista de más de 900 especies. Esta riqueza representa el 7 \% de todas las especies de agua dulce descritas en el mundo, haciendo de Bolivia uno de los países con mayor diversidad de peces.

Este libro, primero de su categoría en Bolivia, presenta una compilación de informaciones sobre una centena de especies de peces, entre las más conocidas o notables, incluyendo fotos, informaciones sobre sus rasgos biológicos y mapas de distribución.

Está dirigido a quienes quieren descubrir o conocer más sobre los peces de Bolivia y la biodiversidad en general. Esperamos que el presente trabajo resalte la necesidad de preservar la singularidad que representan las aguas bolivianas con su diversa fauna, y que ayude al pueblo boliviano a conocer mejor y valorar su patrimonio natural.

Since the last decade, an increasing attention from scientists and national authorities has led to significant advances in our knowledge of Bolivian fishes. To date, more than 900 fish species are known to inhabit Bolivian waters. This richness represents 7 \% of all freshwater fish species described worldwide, making Bolivia one of the most species rich countries.

This book, first of its kind for Bolivia, presents a compilation of information on the most well-known species, including pictures, details on life history traits and maps of distribution. We hope this book will participate in demonstrating the need to preserve the uniqueness that represents the Bolivian waters and their diverse fish fauna, and helping Bolivian people in discovering their natural heritage.

}, issn = {9789995415747}, author = {Sarmiento, Jaime and R{\'e}my Bigorne and Carvajal-Vallejos, F M and Maldonado, Mabel and Leciak, Elisabeth and Thierry Oberdorff} } @article {3273, title = {Phytoplankton diversity and community composition along the estuarine gradient of a temperate macrotidal ecosystem: combined morphological and molecular approaches.}, journal = {PLoS One}, volume = {9}, year = {2014}, month = {2014}, pages = {e94110}, abstract = {

Microscopical and molecular analyses were used to investigate the diversity and spatial community structure of spring phytoplankton all along the estuarine gradient in a macrotidal ecosystem, the Baie des Veys (eastern English Channel). Taxa distribution at high tide in the water column appeared to be mainly driven by the tidal force which superimposed on the natural salinity gradient, resulting in a two-layer flow within the channel. Lowest taxa richness and abundance were found in the bay where Teleaulax-like cryptophytes dominated. A shift in species composition occurred towards the mouth of the river, with the diatom Asterionellopsis glacialis dramatically accumulating in the bottom waters of the upstream brackish reach. Small thalassiosiroid diatoms dominated the upper layer river community, where taxa richness was higher. Through the construction of partial 18S rDNA clone libraries, the microeukaryotic diversity was further explored for three samples selected along the surface salinity gradient (freshwater - brackish - marine). Clone libraries revealed a high diversity among heterotrophic and/or small-sized protists which were undetected by microscopy. Among them, a rich variety of Chrysophyceae and other lineages (e.g. novel marine stramenopiles) are reported here for the first time in this transition area. However, conventional microscopy remains more efficient in revealing the high diversity of phototrophic taxa, low in abundances but morphologically distinct, that is overlooked by the molecular approach. The differences between microscopical and molecular analyses and their limitations are discussed here, pointing out the complementarities of both approaches, for a thorough phytoplankton community description.

}, issn = {1932-6203}, doi = {10.1371/journal.pone.0094110}, author = {Bazin, Pauline and Fabien Jouenne and Friedl, Thomas and Deton-Cabanillas, Anne-Flore and Bertrand Le Roy and Beno{\^\i}t V{\'e}ron} } @article {SakkaHlaili_etal2013, title = {Planktonic food webs revisited : reanalysis of results from the linear inverse approach}, journal = {Progress in Oceanography}, volume = {120}, year = {2014}, month = {01/2014}, pages = {216{\textendash}229}, abstract = {

Identification of the trophic pathway that dominates a given planktonic assemblage is generally based on the distribution of biomasses among food-web compartments, or better, the flows of materials or energy among compartments. These flows are obtained by field observations and a posteriori analyses, including the linear inverse approach. In the present study, we re-analysed carbon flows obtained by inverse analysis at 32 stations in the global ocean and one large lake. Our results do not support two {\textquotedblleft}classical{\textquotedblright} views of plankton ecology, i.e. that the herbivorous food web is dominated by mesozooplankton grazing on large phytoplankton, and the microbial food web is based on microzooplankton significantly consuming bacteria; our results suggest instead that phytoplankton are generally grazed by microzooplankton, of which they are the main food source. Furthermore, we identified the {\textquotedblleft}phyto-microbial food web{\textquotedblright}, where microzooplankton largely feed on phytoplankton, in addition to the already known {\textquotedblleft}poly-microbial food web{\textquotedblright}, where microzooplankton consume more or less equally various types of food. These unexpected results led to a (re)definition of the conceptual models corresponding to the four trophic pathways we found to exist in plankton, i.e. the herbivorous, multivorous, and two types of microbial food web. We illustrated the conceptual trophic pathways using carbon flows that were actually observed at representative stations. The latter can be calibrated to correspond to any field situation. Our study also provides researchers and managers with operational criteria for identifying the dominant trophic pathway in a planktonic assemblage, these criteria being based on the values of two carbon ratios that could be calculated from flow values that are relatively easy to estimate in the field.

}, doi = {10.1016/j.pocean.2013.09.003}, author = {Sakka-Hlaili, A and Nathalie Niquil and Legendre, L} } @article {3306, title = {Prophenoloxidase system, lysozyme and protease inhibitor distribution in the common cuttlefish Sepia officinalis}, year = {2014}, author = {Le Pabic, C and Safi, Georges and Antoine Serpentini and Jean-Marc Lebel and Jean-Paul Robin and Sim{\'e}oni Koueta-Noussith{\'e}} } @article {3370, title = {Protecting honey bees: identification of a new varroacide by in silico, in vitro, and in vivo studies.}, journal = {Parasitol Res}, volume = {113}, year = {2014}, month = {2014 Dec}, pages = {4601-10}, abstract = {

Varroa destructor is the main concern related to the gradual decline of honeybees. Nowadays, among the various acaricides used in the control of V. destructor, most presents increasing resistance. An interesting alternative could be the identification of existent molecules as new acaricides with no effect on honeybee health. We have previously constructed the first 3D model of AChE for honeybee. By analyzing data concerning amino acid mutations implicated in the resistance associated to pesticides, it appears that pirimicarb should be a good candidate for varroacide. To check this hypothesis, we characterized the AChE gene of V. destructor. In the same way, we proposed a 3D model for the AChE of V. destructor. Starting from the definition of these two 3D models of AChE in honeybee and varroa, a comparison between the gorges of the active site highlighted some major differences and particularly different shapes. Following this result, docking studies have shown that pirimicarb adopts two distinct positions with the strongest intermolecular interactions with VdAChE. This result was confirmed with in vitro and in vivo data for which a clear inhibition of VdAChE by pirimicarb at 10 μM (contrary to HbAChE) and a 100\% mortality of varroa (dose corresponding to the LD50 (contact) for honeybee divided by a factor 100) were observed. These results demonstrate that primicarb could be a new varroacide candidate and reinforce the high relationships between in silico, in vitro, and in vivo data for the design of new selective pesticides.

}, issn = {1432-1955}, doi = {10.1007/s00436-014-4150-z}, author = {Dulin, Fabienne and C{\'e}line Zatylny-Gaudin and Ballandonne, C{\'e}line and Guillet, Bertrand and Bonafos, Romain and Bureau, Ronan and Halm, Marie Pierre} } @article {6839, title = {Projected poleward shift of king penguins{\textquoteright}(Aptenodytes patagonicus) foraging range at the Crozet Islands, southern Indian Ocean}, journal = {Proceedings of the Royal Society B: Biological Sciences}, volume = {279}, year = {2012}, pages = {2515{\textendash}2523}, doi = {10.1098/rspb.2011.2705}, url = {https://royalsocietypublishing.org/doi/full/10.1098/rspb.2011.2705}, author = {Clara P{\'e}ron and WEIMERSKIRCH, Henri and Bost, Charles-Andr{\'e}} } @article {8590, title = {Predictive distribution models applied to satellite tracks: modelling the western African winter range of European migrant Black Storks Ciconia nigra}, journal = {Journal of Ornithology}, volume = {152}, year = {2011}, month = {Jan-01-2011}, pages = {111 - 118}, issn = {2193-7192}, doi = {10.1007/s10336-010-0555-3}, url = {http://link.springer.com/10.1007/s10336-010-0555-3}, author = {Jiguet, Fr{\'e}d{\'e}ric and Barbet-Massin, Morgane and Chevallier, Damien} } @article {8596, title = {Prey selection of the black stork in the African wintering area}, journal = {Journal of Zoology}, volume = {276}, year = {2008}, month = {Jan-11-2008}, pages = {276 - 284}, issn = {0952-8369}, doi = {10.1111/jzo.2008.276.issue-310.1111/j.1469-7998.2008.00488.x}, url = {https://onlinelibrary.wiley.com/toc/14697998/276/3}, author = {Chevallier, D. and Baillon, F. and Robin, J.-P. and Le Maho, Y. and Massemin-Challet, S.} }