@article {9592,
	title = {Demography of endangered juvenile green turtles in face of environmental changes: 10 years of capture-mark-recapture efforts in Martinique},
	journal = {Biological Conservation},
	volume = {291},
	year = {2024},
	month = {Jan-03-2024},
	pages = {110471},
	issn = {00063207},
	doi = {10.1016/j.biocon.2024.110471},
	url = {https://authors.elsevier.com/c/1icDh1R~eWZv6},
	author = {Lelong, Pierre and Besnard, Aur{\'e}lien and Girondot, Marc and Habold, Caroline and Priam, Fabienne and Giraudeau, Mathieu and Le Loc{\textquoteright}h, Guillaume and Le Loc{\textquoteright}h, Aur{\'e}lie and Fournier, Pascal and Fournier-Chambrillon, Christine and Bustamante, Paco and Dupont, Sophie M. and Vincze, Orsolya and Gros-Desormeaux, Jean-Rapha{\"e}l and Martin, Jordan and Bourgeois, Ouv{\'e}a and Lepori, Muriel and R{\'e}gis, Sidney and Lecerf, Nicolas and Lefebvre, Fabien and Aubert, Nathalie and Frouin, C{\'e}dric and Flora, Fr{\'e}d{\'e}ric and Pimentel, Esteban and Pimentel, Manon and Siegwalt, Flora and Jeantet, Lor{\`e}ne and Chambault, Philippine and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and Arthus, Mosiah and Louis-Jean, Laurent and Brador, Aude and Giannasi, Paul and Etienne, Denis and Lecerf, Natha{\"e}l and Chevallier, Pascale and Chevallier, Tao and Meslier, St{\'e}phane and Landreau, Anthony and Maceno, Myriane and Larcher, Eug{\`e}ne and Le Maho, Yvon and Chevallier, Damien}
}
@article {9610,
	title = {Freshwater and limno-terrestrial meiofauna of the Massane Forest Reserve in the Eastern French Pyrenees},
	journal = {Biogeographia {\textendash} The Journal of Integrative Biogeography},
	volume = {39},
	year = {2024},
	month = {Mar-02-2026},
	issn = {1594-7629},
	doi = {10.21426/B639162226},
	url = {https://escholarship.org/uc/item/36v7z1xj},
	author = {Majdi, Nabil and Araujo, Thiago Quintao and Bekkouche, Nicolas and Fontaneto, Diego and Garrigue, Joseph and Larrieu, Laurent and Kamburska, Lyudmila and Kieneke, Alexander and Minowa, Axell Kou and Laumer, Christopher and Sabatino, Raffaella and Sorel, Diane and Stec, Daniel and Traunspurger, Walter}
}
@article {9642,
	title = {Hydro-morphological features and functional structure of fish assemblages mediate species isotopic niches in estuaries},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {299},
	year = {2024},
	month = {Jan-04-2024},
	pages = {108686},
	abstract = {Despite the popularity of stable isotope analysis (Carbon and Nitrogen), the drivers of species isotopic niches and their consequences on food web functioning remained poorly described, especially in estuaries. Here, we hypothesised that species niche characteristics are influenced by ecosystem hydro-morphological features and the functional structure of fish assemblages. The trophic niches of four fish species (Dicentrarchus labrax, Pomatoschistus minutus, Sprattus\&nbsp;and\&nbsp;Platichthys flesus) and overlap between them were compared during two consecutive autumns in eight estuarine ecosystems of the northeast Atlantic Ocean. Our findings demonstrated a relative steadiness of trophic positions of fish in estuaries, despite a high level of interspecific variability. The seabass generally occupied the higher trophic position, followed by the sand goby, while the flounder and sprat were at the lowest position in the food web. Species isotopic niches and overlap were mediated by some estuarine features, including estuary size and intertidal extent, but also by biotic interactions at the intra- and inter-specific levels, as reflected by the influence of fish abundance and functional diversity metrics. Our results support the statement that the intertidal area is a pivotal factor in regulating trophic interactions, by promoting niche partitioning and diversification of trophic resources between species. Moreover, niche size and dietary divergence of species decreased with increasing regularity of trophic strategies within assemblages, suggesting that species occupied more restricted trophic niches when they were less subjected to competition for the same food resources. These findings emphasize the importance of local conditions and the functional composition of assemblages in modulating the trophic resources consumed by fish in estuarine environments.},
	keywords = {Estuary, functional diversity, Isotopic niche, stable isotope, Trophic competition},
	issn = {02727714},
	doi = {10.1016/j.ecss.2024.108686},
	url = {https://www.sciencedirect.com/science/article/pii/S0272771424000738},
	author = {Teichert, Nils and Liz{\'e}, Anne and Lepage, Mario and Cabral, Henrique and Trancart, Thomas and Acou, Anthony and Larregieu, Marie and Feunteun, Eric and Carpentier, Alexandre}
}
@article {9606,
	title = {Northeast Atlantic elasmobranch community on the move: Functional reorganization in response to climate change},
	journal = {Global Change Biology},
	volume = {30},
	year = {2024},
	month = {Jan-01-2024},
	abstract = {While spatial distribution shifts have been documented in many marine fishes under global change, the responses of elasmobranchs have rarely been studied, which may have led to an underestimation of their potential additional threats. Given their irreplaceable role in ecosystems and their high extinction risk, we used a 24-year time series (1997{\textendash}2020) of scientific bottom trawl surveys to examine the effects of climate change on the spatial distribution of nine elasmobranch species within Northeast Atlantic waters. Using a hierarchical modeling of species communities, belonging to the joint species distribution models, we found that suitable habitats for four species increased on average by a factor of 1.6 and, for six species, shifted north-eastwards and/or to deeper waters over the past two decades. By integrating species traits, we showed changes in habitat suitability led to changes in the elasmobranchs trait composition. Moreover, communities shifted to deeper waters and their mean trophic level decreased. We also note an increase in the mean community size at maturity concurrent with a decrease in fecundity. Because skates and sharks are functionally unique and dangerously vulnerable to both climate change and fishing, we advocate for urgent considerations of species traits in management measures. Their use would make it better to identify species whose loss could have irreversible impacts in face of the myriad of anthropogenic threats.},
	issn = {1354-1013},
	doi = {10.1111/gcb.v30.110.1111/gcb.17157},
	url = {https://onlinelibrary.wiley.com/toc/13652486/30/1https://onlinelibrary.wiley.com/doi/10.1111/gcb.17157https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.17157},
	author = {Coulon, No{\'e}mie and Elliott, Sophie and Teichert, Nils and Auber, Arnaud and McLean, Matthew and Barreau, Thomas and Feunteun, Eric and Carpentier, Alexandre}
}
@article {9643,
	title = {Quantifying larval dispersal portfolio in seabass nurseries using otolith chemical signatures},
	journal = {Marine Environmental Research},
	volume = {196},
	year = {2024},
	month = {Jan-04-2024},
	pages = {106426},
	abstract = {The temporal asynchronies in larvae production from different spawning areas are fundamental components for ensuring stability and resilience of marine metapopulations. Such a concept, named portfolio effect, supposes that diversifying larval dispersal histories should minimize the risk of recruitment failure by increasing the probability that at least some larvae successfully settle in nursery. Here, we used a reconstructive approach based on otolith chemistry to quantify the larval dispersal portfolio of the European seabass,\&nbsp;Dicentrarchus labrax, across six estuarine nursery areas of the northeast Atlantic Ocean. The analysis of natal and trajectory signatures indicated that larvae hatch in distinct environments and then dispersed in water masses featured by contrasting chemical signatures. While some trace elements appeared affected by temporal changes (Mn and Sr), others varied spatially during the larval stage but remained poorly affected by temporal fluctuation and fish physiology (Ba, Cu, Rb and Zn). We then proposed two diversity metrics based on richness and variations of chemical signatures among populations to reflect spatio-temporal diversity in natal origins and larval trajectories (i.e., estimates of dispersal portfolio). Along the French coast, the diversity estimates were maximum in nurseries located at proximity of offshore spawning sites and featured by complex offshore hydrodynamic contexts, such as the Mont St-Michel bay. Finally, our findings indicate that the dispersal portfolio was positively related with the local abundance of seabass juveniles, supporting the assumption that heterogeneity in dispersal history contributes to promote recruitment success in nurseries.},
	keywords = {Connectivity, dispersion, Dynamic time warping, Fish nursery, Larval life history, Otolith chemistry},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2024.106426},
	url = {https://www.sciencedirect.com/science/article/pii/S0141113624000874},
	author = {Teichert, Nils and Tabouret, H{\'e}l{\`e}ne and Liz{\'e}, Anne and Daverat, Fran{\c c}oise and Acou, Anthony and Trancart, Thomas and Virag, Laure-Sarah and Pecheyran, Christophe and Feunteun, Eric and Carpentier, Alexandre}
}
@article {9649,
	title = {Testing for concordance between predicted species richness, past prioritization, and marine protected area designations in the western Indian Ocean},
	journal = {Conservation Biology},
	year = {2024},
	month = {Apr-03-2026},
	issn = {0888-8892},
	doi = {10.1111/cobi.14256},
	url = {https://conbio.onlinelibrary.wiley.com/doi/10.1111/cobi.14256},
	author = {McClanahan, Tim R. and Friedlander, Alan M. and Wickel, Julien and Graham, Nicholas A. J. and Bruggemann, J. Henrich and Guillaume, Mireille M. M. and Chabanet, P. and Porter, Sean and Schleyer, Michael H. and Azali, M. Kodia and Muthiga, N. A.}
}
@article {9321,
	title = {Beach erosion aggravates the drastic decline in marine turtle populations in French Guiana},
	journal = {Regional Environmental Change},
	volume = {23},
	year = {2023},
	month = {Jan-09-2023},
	issn = {1436-3798},
	doi = {10.1007/s10113-023-02105-3},
	url = {https://link.springer.com/10.1007/s10113-023-02105-3},
	author = {Chevallier, Damien and Girondot, Marc and P{\'e}ron, Christina and Martin, Jordan and Bonola, Marc and Chevalier, Johan and de Thoisy, Beno{\^\i}t and Kelle, Laurent and Le Maho, Yvon and Gardel, Antoine and Anthony, Edward J.}
}
@article {9308,
	title = {Benchmarking global biodiversity of decapod crustaceans (Crustacea: Decapoda)},
	journal = {Journal of Crustacean Biology},
	volume = {43},
	year = {2023},
	month = {Aug-01-2023},
	issn = {0278-0372},
	doi = {10.1093/jcbiol/ruad042},
	url = {https://academic.oup.com/jcb/article/doi/10.1093/jcbiol/ruad042/7234762},
	author = {De Grave, Sammy and Decock, Wim and Dekeyzer, Stefanie and Davie, Peter J F and Fransen, Charles H J M and Boyko, Christopher B and Poore, Gary C B and Macpherson, Enrique and Ahyong, Shane T and Crandall, Keith A and de Mazancourt, Valentin and Osawa, Masayuki and Chan, Tin-Yam and Ng, Peter K L and Lemaitre, Rafael and van der Meij, Sancia E T and Santos, Sandro}
}
@article {9085,
	title = {Biogeographical snapshot of life-history traits of European silver eels: insights from otolith microchemistry},
	journal = {Aquatic Sciences},
	volume = {85},
	year = {2023},
	month = {Jan-04-2023},
	abstract = {Life-history traits of eels display a high level of phenotypic plasticity in response to large-scale biogeographical drivers, as well as local conditions encountered during the continental phase. Here, we provided a biogeographical snapshot of the variability of life-history traits of eels (Anguilla anguilla), across a large proportion of their natural distribution range. Silver eels (n = 99) were collected across eleven European catchments to investigate how life-history traits vary along geographical and saline habitats, as it was inferred from the Sr:Ca ratio in otoliths. Among 13 life-history traits tested, 3 of them such as total length, body or liver weight were related to geographical coordinates. Overall, eels grow faster in southern Europe and migrate earlier suggesting that the silvering process is related to the local growth conditions more than fish age. The salinity profiles revealed by the otoliths{\textquoteright} Sr:Ca ratios indicate that eels with a brackish life-history generally grow faster, reach larger size-at-age, and have a better condition than eels living in freshwater. This observation associated with the lower abundance of the sanguivorous swimbladder nematode, Anguillicola crassus, confirms the importance of brackish areas for sustaining the eel production. A large proportion of the observed variation of life-history traits remained unexplained by the biogeographical trends and salinity condition, which suggests that other drivers act at the catchment scale.<br>
},
	keywords = {Anguilla anguilla, Biogeography, Brackish habitat, otolith, phenotypic plasticity, Sr:Ca ratio},
	issn = {1015-1621},
	doi = {10.1007/s00027-023-00940-4},
	url = {https://link.springer.com/10.1007/s00027-023-00940-4},
	author = {Teichert, Nils and Bourillon, Bastien and Suzuki, Kyoko and Acou, Anthony and Alexandre Carpentier and Kuroki, Mari and Righton, David and Thomas Trancart and Virag, Laure-Sarah and Walker, Alan and Otake, Tsuguo and Eric Feunteun}
}
@article {9192,
	title = {Data quality control considerations in multivariate environmental monitoring: experience of the French coastal network SOMLIT},
	journal = {Frontiers in Marine Science},
	volume = {10},
	year = {2023},
	month = {Feb-04-2025},
	doi = {doi.org/10.3389/fmars.2023.1135446},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2023.1135446/full},
	author = {Breton, Elsa and Savoye, Nicolas and Rimmelin-Maury, Peggy and Sautour, Benoit and Goberville, Eric and Lheureux, Arnaud and Cariou, Thierry and Ferreira, Sophie and Agogue, Helene and Alliouane, Samir and Aubert, Fabien and Aubin, S{\'e}bastien and Berthebaud, Eric and Blayac, Hadrien and Blondel, Lucie and Boulart, C{\'e}dric and Bozec, Yann and Bureau, Sarah and Caillo, Arnaud and Cauvin, Arnaud and Cazes, Jean-Baptiste and Chasselin, L{\'e}o and Pascal Claquin and Conan, Pascal and Cordier, Marie-Ange and Costes, Laurence and Crec{\textquoteright}hriou, Romain and Crispi, Olivier and Crouvoisier, Muriel and David, Val{\'e}rie and Del Amo, Yolanda and De Lary, Hortense and Delebecq, Gaspard and Devesa, J{\'e}r{\'e}my and Domeau, Aur{\'e}lien and Durozier, Maria and Emery, Claire and Eric Feunteun and Juliette Fauchot and Gentilhomme, Val{\'e}rie and Geslin, Sandrine and Giraud, M{\'e}lanie and Granger{\'e}, Karine and Gr{\'e}gori, Gerald and Grossteffan, Emilie and Gueux, Aurore and Guillaudeau, Julien and Guillou, Ga{\"e}l and Harrewyn, Manon and Jolly, Orianne and Jude-Lemeilleur, Florence and Labatut, Paul and Labourdette, Nathalie and Lachauss{\'e}e, Nicolas and Lafont, Michel and Lagadec, V{\'e}ronique and Lambert, Christophe and Lamoureux, Jezebel and Lanceleur, Laurent and Lebreton, Beno{\^\i}t and Lecuyer, Eric and Lemeille, David and Leredde, Yann and Leroux, C{\'e}dric and Leynaert, Aude and L{\textquoteright}Helguen, St{\'e}phane and Li{\'e}nart, Camilla and Mac{\'e}, Eric and Maria, Eric and Marie, Barbara and Marie, Dominique and Mas, S{\'e}bastien and Mendes, Fabrice and Mornet, Line and Mostajir, Behzad and Mousseau, Laure and Nowaczyk, Antoine and Nunige, Sandra and Parra, Ren{\'e} and Paulin, Thomas and Pecqueur, David and Petit, Franck and Pineau, Philippe and Raimbault, Patrick and Rigaut-Jalabert, Fabienne and Salmeron, Christophe and Salter, Ian and Sauriau, Pierre-Guy and Seuront, Laurent and Sultan, Emmanuelle and Vald{\`e}s, R{\'e}mi and Vantrepotte, Vincent and Vidussi, Francesca and Voron, Florian and Vuillemin, Renaud and Zudaire, Laurent. and Garcia, Nicole}
}
@article {9004,
	title = {Decoupling carry-over effects from environment in fish nursery grounds},
	journal = {Science of The Total Environment},
	volume = {857},
	year = {2023},
	month = {Jan-01-2023},
	pages = {159487},
	abstract = {Life-history trait expression not only depends on the current environmental constraints, but also on the past ones that shaped traits expressed earlier in life. Such an effect, named carry-over, can occur in fish nursery grounds when juvenile performances after settlement are influenced by their larval traits in combination with conditions experienced in nurseries. To date, the impacts of environmental and human stressors on post-settlement traits have been assessed, but independently from larval traits, so that the contributions of environmental versus carry-over constraints remain unquantified. Here, we used a reconstructive approach based on otolith microstructure to investigate how carry-over and environment affect life-history traits of the European seabass,\&nbsp;Dicentrarchus labrax. In the northeast Atlantic Ocean, seabass juveniles were collected in six French estuarine nursery areas with contrasted environmental conditions (water temperature, salinity, food availability, and anthropogenic impacts), and five of their life-history traits across ontogenetic stages were measured (pelagic growth, larval duration, size at settlement, post-settlement growth and body condition). Piecewise structural equation model emphasized the strong co-variation of larval traits in response to food availability and temperature in the pelagic environment, stressing that fast growing larvae are characterized by shorter pelagic larval duration, but larger size at recruitment. However, the magnitude of carry-over effects greatly varied between traits, revealing that larval trait impacts on post-settlement traits remained minor as compared to the nursery environment. In estuarine nurseries, our findings suggest that resource allocation results from a trade-off between somatic growth and energy storage. Fish juveniles exposed to anthropogenic stress or risk of food limitation tended to predominantly invest in storage, whereas individuals in favourable conditions allocated their resources in somatic growth. These findings highlight the importance of heterogeneity in pelagic and nursery environments in understanding trait variations and population dynamic of estuarine dependent fish.},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2022.159487},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S004896972206586X},
	author = {Teichert, Nils and Liz{\'e}, Anne and Cabral, Henrique and Acou, Anthony and Trancart, Thomas and Virag, Laure-Sarah and Feunteun, Eric and Alexandre Carpentier}
}
@article {9302,
	title = {Discovery of a Digenean (Cryptogonimidae) Living in a Cleft-Lipped Goby, Sicyopterus cynocephalus (Teleostei: Gobiidae) from Ranongga Island, Solomon Islands: Analysis of Multiple Ribosomal DNA Regions},
	journal = {Pathogens},
	volume = {12},
	year = {2023},
	month = {Jan-07-2023},
	pages = {923},
	doi = {10.3390/pathogens12070923},
	url = {https://www.mdpi.com/2076-0817/12/7/923},
	author = {Mathews, Patrick D. and Nicolas Rabet and L. Espinoza, Luis and Vincent Ha{\"y} and Bonillo, C{\'e}line and Philippe Keith and Clara Lord and Audebert, Fabienne}
}
@article {9466,
	title = {An ecosystem-wide approach for assessing the spatialized cumulative effects of local and global changes on coastal ecosystem functioningAbstract},
	journal = {ICES Journal of Marine Science},
	volume = {80},
	year = {2023},
	month = {May-03-2025},
	pages = {1129 - 1142},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsad043},
	url = {https://academic.oup.com/icesjms/article/80/4/1129/7092991},
	author = {Nogues, Quentin and Bourdaud, Pierre and Araignous, Emma and Halouani, Ghassen and Ben~Rais~Lasram, Frida and Dauvin, Jean-Claude and Le~Loc{\textquoteright}h, Fran{\c c}ois and Nathalie Niquil},
	editor = {Coll, Marta}
}
@article {9296,
	title = {Effects of anthropogenic magnetic fields on the behavior of a major predator of the intertidal and subtidal zones, the velvet crab Necora puber},
	journal = {Marine Environmental Research},
	volume = {190},
	year = {2023},
	month = {Jan-09-2023},
	pages = {106106},
	abstract = {With the progress of the offshore renewable energy sector and electrical interconnection projects, a substantial rise in the number of submarine power cables is expected soon. Such cables emit either alternating or direct current magnetic fields whose impact on marine invertebrates is currently unknown and hardly studied. In this context, this study aimed to assess potential short-term exposure (30\&nbsp;min) effects of both alternating and direct magnetic fields of increasing intensity (72{\textendash}304\&nbsp;μT) on the behavior of the high-ecological value velvet crab (Necora puber). Three experiments were designed to evaluate whether the strongest magnetic field intensities induce crabs{\textquoteright} attraction or repulsion responses, and whether foraging and sheltering behaviors may be modified. We extracted from video analyses several variables as the time budgets crabs spent immobile, moving, feeding, or sheltering as well as total and maximal distance reached in the magnetic field (MF) gradient. The crabs exposed to artificial MF did not exhibit significant behavioral changes compared with those exposed to the {\textquotedblleft}natural{\textquotedblright} MF. Overall, our results suggest that, at such intensities, artificial magnetic fields do not significantly alter behaviors of N. puber. Nevertheless, future studies should be conducted to examine the effects of longer exposure periods and to detect potential habituation or resilience processes.},
	keywords = {Behavior, Crustaceans, Magnetic fields, Magneto-sensitivity, Marine renewable energy devices, Submarine power cables},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2023.106106},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0141113623002349},
	author = {Albert, Luana and Olivier, Fr{\'e}d{\'e}ric and Jolivet, Aur{\'e}lie and Chauvaud, Laurent and Chauvaud, Sylvain}
}
@book {9396,
	title = {El Observatorio permanente del Lago Titicaca (OLT) {\textendash} Investigaci{\'o}n y monitoreo de la eutrofizaci{\'o}n del Lago Menor con estaciones limnol{\'o}gicas, boya HydroMet y teledetecci{\'o}n satelital.},
	series = {IRD/BOREA, UMSA/IE \& UMSA/IIGEO.},
	year = {2023},
	pages = {370},
	publisher = {Proyecto Piloto PNUD/GEF 05-B-05 (2019-2022). Concep Trazzos - Proyectos Gr{\'a}ficos, La Paz, Bolivia},
	organization = {Proyecto Piloto PNUD/GEF 05-B-05 (2019-2022). Concep Trazzos - Proyectos Gr{\'a}ficos, La Paz, Bolivia},
	edition = {Registro de Deposito Legal de Obras Impresas},
	issn = {978-9917-0-3035-5},
	author = {Xavier Lazzaro and Viviana Edith Cruz Hern{\'a}ndez and Marcela Andrea Ormachea Rojas and William Gustavo Lanza Aguilar and Javier Alberto Maldonado Alfaro and Javier N{\'u}{\~n}ez Villalba}
}
@article {9237,
	title = {Evidence of backcross inviability and mitochondrial DNA paternal leakage in sea turtle hybrids},
	journal = {Molecular Ecology},
	volume = {32},
	year = {2023},
	month = {Jan-02-2023},
	pages = {628 - 643},
	abstract = {Hybridization is known to be part of many species{\textquoteright} evolutionary history. Sea turtles have a fascinating hybridization system in which species separated by as much as 43\&nbsp;million years are still capable of hybridizing. Indeed, the largest nesting populations in Brazil of loggerheads (Caretta caretta) and hawksbills (Eretmochelys imbricata) have a high incidence of hybrids between these two species. A third species, olive ridleys (Lepidochelys olivacea), is also known to hybridize although at a smaller scale. Here, we used restriction site-associated DNA sequencing (RAD-Seq) markers, mitogenomes, and satellite-telemetry to investigate the patterns of hybridization and introgression in the Brazilian sea turtle population and their relationship with the migratory behaviours between feeding and nesting aggregations. We also explicitly test if the mixing of two divergent genomes in sea turtle hybrids causes mitochondrial paternal leakage. We developed a new species-specific PCR-assay capable of detecting mitochondrial DNA (mtDNA) inheritance from both parental species and performed ultra-deep sequencing to estimate the abundance of each mtDNA type. Our results show that all adult hybrids are first generation (F1) and most display a loggerhead migratory behaviour. We detected paternal leakage in F1 hybrids and different proportions of mitochondria from maternal and paternal species. Although previous studies showed no significant fitness decrease in hatchlings, our results support genetically-related hybrid breakdown possibly caused by cytonuclear incompatibility. Further research on hybrids from other populations in addition to Brazil and between different species will show if backcross inviability and mitochondrial paternal leakage is observed across sea turtle species.},
	keywords = {Brazil, ddRAD, hybridization, introgression, Marine turtles, mitogenomes},
	issn = {0962-1083},
	doi = {10.1111/mec.v32.310.1111/mec.16773},
	url = {https://onlinelibrary.wiley.com/toc/1365294x/32/3},
	author = {Vila{\c c}a, Sibelle T. and Maroso, Francesco and Lara, Paulo and de Thoisy, Beno{\^\i}t and Chevallier, Damien and Arantes, Larissa Souza and Santos, Fabricio R. and Bertorelle, Giorgio and Mazzoni, Camila J.}
}
@article {9217,
	title = {Impact of vessel noise on feeding behavior and growth of zooplanktonic species},
	journal = {Frontiers in Marine Science},
	volume = {10},
	year = {2023},
	month = {Mar-05-2024},
	pages = {1111466},
	abstract = {Anthropogenic noise is a pervasive feature of the coastal ocean soundscape and is intensifying as vessel traffic activity increases. Low-frequency sounds from wave action on coastal reefs or anthropogenic noise have been shown to initiate larval settlement of marine invertebrates and accelerate metamorphosis to juvenile stages. These results suggest that some planktonic species can perceive and be impacted by anthropogenic sound. Hence, we tested the hypothesis that vessel noise has an impact on the feeding behavior of blue mussel (Mytilus edulis) veligers and of the copepod Eurytemora herdmani as well as on the growth of the rotifer Brachionus plicatilis. The results show that microalgae and feeding behavior of early life stages of mussels and copepods are not influenced by the presence of vessel noise. The growth of the rotifers was similar between the two sound treatments, but rotifers{\textquoteright} egg production in the absence of vessel noise was higher and eggs were also larger. Our results suggest that the effects of noise on plankton are complex; much more work is needed to unravel these often subtle effects.},
	keywords = {bioacoustic, clearance rate, Growth, vessel noise emission, Zooplankton},
	doi = {10.3389/fmars.2023.1111466},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2023.1111466/full},
	author = {Aspirault, Ariane and Winkler, Gesche and Jolivet, Aur{\'e}lie and Audet, C{\'e}line and Chauvaud, Laurent and Juanes, Francis and Olivier, Fr{\'e}d{\'e}ric and Tremblay, Rejean}
}
@article {9044,
	title = {Influence of Nutrient Gradient on Phytoplankton Size Structure, Primary Production and Carbon Transfer Pathway in a Highly Productive Area (SE Mediterranean)},
	journal = {Ocean Science Journal},
	volume = {58},
	year = {2023},
	month = {Jan-03-2023},
	abstract = {We assessed the spatial variability in the size structure of phytoplankton, community composition, primary production and carbon fluxes through the planktonic food web of the Gulf of Gab{\`e}s (GG; Southeastern Mediterranean Sea) in the fall of 2017 during the MERMEX-MERITE cruise. High concentrations in nutrients, chlorophyll a (~ 2{\textendash}6 μg L -1 ) and primary production (1816{\textendash}3674 mg C m -2 d -1 ) revealed an eutrophic status of the studied stations in the GG. In accordance with hydrodynamic features, inorganic nutrients showed increases in concentrations from North to South and from coast to off- shore, these nutrient gradients impacting the spatial distribution of phytoplankton community. Size-fractioned phytoplankton biomass and production were the lowest in the northernmost zone where they were mainly sustained by pico-sized fraction. Concomitantly, in this area, small aloricate ciliates were dominant leading to a high microbivory. Conversely, higher biomass and production were measured towards the South and offshore with prevalence of larger phytoplankton (nano- and/or micro- sized fractions) supported by diatoms. The herbivorous protozooplankton and metazooplankton were more abundant in these zones, resulting in an increase of the herbivory. The vertical particulate organic carbon flux followed also a north{\textendash}south and coast-offshore increasing gradient, with a higher contribution of phytoplankton, and zooplankton fecal pellets to the sink- ing organic matter in the southernmost area. Our results suggest that even in nutrient-rich and highly productive waters, a continuum of trophic pathways, ranging from microbial to multivorous and herbivorous food webs, may exist, which implies different efficiencies in carbon export and carrying capacity within the ecosystem.},
	keywords = {Phytoplankton size-structure {\textperiodcentered} Primary production {\textperiodcentered} Zooplankton grazing {\textperiodcentered} Planktonic food web {\textperiodcentered} Mediterranean gulf},
	issn = {1738-5261},
	doi = {10.1007/s12601-023-00101-6},
	url = {https://link.springer.com/10.1007/s12601-023-00101-6},
	author = {Chkili Oumayma and Meddeb Marouan and Mejri Kousri Kaouther and Melliti Ben Garali Sondes and Makhlouf Belkhahia Nouha and Tedetti Marc and Pagano Marc and Belaaj Zouari Amel and Belhassen Malika and Niquil Nathalie and Sakka Hlaili Asma}
}
@article {9641,
	title = {Isotopic niches of diadromous fishes inform on interspecific competition in an obstructed catchment},
	journal = {Frontiers in Ecology and Evolution},
	volume = {11},
	year = {2023},
	month = {Apr-11-2025},
	abstract = {Competition arises when species share a limited resource, but this can be avoided through niche partitioning. Despite the large body of literature on diadromous fishes, very few studies have focused on niche partitioning when competing for resources. Diadromous fishes are suffering a global decline throughout their range in part due to their peculiar life history traits as they migrate from the sea to freshwater to spawn or the reverse. They are particularly sensitive to river fragmentation induced by barriers. Dams for instance are expected to alter the spatial distribution and resource exploitation of diadromous fishes as well as other organisms. Here, we studied the ecological niche of six taxa of diadromous fishes, temporally co-occurring in the same land{\textendash}sea continuum obstructed by two river dams. We used Bayesian mixing models run on C and N isotopes to infer the various habitats used and the origin of the trophic carbon in muscle and scale tissues of diadromous fishes. Results showed that the sub-adults of\&nbsp;Anguilla anguilla, juveniles of\&nbsp;Petromyzon marinus, and\&nbsp;Salmo trutta\&nbsp;exploit mainly the freshwater, or marine part for adults of\&nbsp;Lampetra fluviatilis, whereas juveniles of\&nbsp;Platichthys flesus\&nbsp;and Mugilidae use all the habitats of the land{\textendash}sea continuum. In the freshwater habitat, the microphytobenthos and biofilm are the main sources of carbon used, while in the marine habitat, the basal carbon sources are more diverse. The analyses of niche overlaps between diadromous fishes demonstrate that the widest isotopic niches, observed for\&nbsp;A. anguilla\&nbsp;and\&nbsp;P. flesus, also have more impact within the community. Results are discussed in terms of intra- and interspecific competition between these diadromous fishes and their generalist/specialist strategies in an obstructed catchment.},
	doi = {10.3389/fevo.2023.124245210.3389/fevo.2023.1242452.s001},
	url = {https://www.frontiersin.org/articles/10.3389/fevo.2023.1242452/fullhttps://www.frontiersin.org/articles/10.3389/fevo.2023.1242452/fullhttps://www.frontiersin.org/articles/10.3389/fevo.2023.1242452/supplementary-material/10.3389/fevo.2023.1242452.s001},
	author = {Liz{\'e}, Anne and Teichert, Nils and Roussel, Jean-Marc and Acou, Anthony and Feunteun, Eric and Carpentier, Alexandre}
}
@article {9523,
	title = {Key issues in assessing threats to sea turtles: knowledge gaps and future directions},
	journal = {Endangered Species Research},
	volume = {52},
	year = {2023},
	month = {Feb-12-2024},
	pages = {303 - 341},
	issn = {1863-5407},
	doi = {10.3354/esr01278},
	url = {https://www.int-res.com/abstracts/esr/v52/p303-341/},
	author = {Fuentes, MMPB and McMichael, E and Kot, CY and Silver-Gorges, I and Wallace, BP and Godley, BJ and Brooks, AML and Ceriani, SA and Cort{\'e}s-G{\'o}mez, AA and Dawson, TM and Dodge, KL and Flint, M and Jensen, MP and Komoroske, LM and Kophamel, S and Lettrich, MD and Long, CA and Nelms, SE and Patr{\'\i}cio, AR and Robinson, NJ and Seminoff, JA and Ware, M and Whitman, ER and Chevallier, Damien and Clyde-Brockway, CE and Korgaonkar, SA and Mancini, A and Mello-Fonseca, J and Monsinjon, JR and Neves-Ferreira, I and Ortega, AA and Patel, SH and Pfaller, JB and Ramirez, MD and Raposo, C and Smith, CE and Abreu-Grobois, FA and Hays, GC}
}
@article {9277,
	title = {Major declines in NE Atlantic plankton contrast with more stable populations in the rapidly warming North Sea},
	journal = {Science of The Total Environment},
	year = {2023},
	month = {Jan-07-2023},
	pages = {165505},
	abstract = {Plankton form the base of marine food webs, making them important indicators of ecosystem status. Changes in the abundance of plankton functional groups, or lifeforms, can affect higher trophic levels and can indicate important shifts in ecosystem functioning. Here, we extend this knowledge by combining data from Continuous Plankton Recorder and fixed-point stations to provide the most comprehensive analysis of plankton time-series for the North-East Atlantic and North-West European shelf to date. We analysed 24 phytoplankton and zooplankton datasets from 15 research institutions to map 60-year abundance trends for 8 planktonic lifeforms. Most lifeforms decreased in abundance (e.g. dinoflagellates: -5 \%, holoplankton: -7 \% decade-1), except for meroplankton, which increased 12 \% decade-1, reflecting widespread changes in large-scale and localised processes. K-means clustering of assessment units according to abundance trends revealed largely opposing trend direction between shelf and oceanic regions for most lifeforms, with North Sea areas characterised by increasing coastal abundance, while abundance decreased in North-East Atlantic areas. Individual taxa comprising each phytoplankton lifeform exhibited similar abundance trends, whereas taxa grouped within zooplankton lifeforms were more variable. These regional contrasts are counterintuitive, since the North Sea which has undergone major warming, changes in nutrients, and past fisheries perturbation has changed far less, from phytoplankton to fish larvae, as compared to the more slowly warming North-East Atlantic with lower nutrient supply and fishing pressure. This more remote oceanic region has shown a major and worrying decline in the traditional food web. Although the causal mechanisms remain unclear, declining abundance of key planktonic lifeforms in the North-East Atlantic, including diatoms and copepods, are a cause of major concern for the future of food webs and should provide a red flag to politicians and policymakers about the prioritisation of future management and adaptation measures required to ensure future sustainable use of the marine ecosystem.},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2023.165505},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969723041281},
	author = {Holland, Matthew M. and Louchart, Arnaud and Artigas, Luis Felipe and Ostle, Clare and Atkinson, Angus and Rombouts, Isabelle and Graves, Carolyn A. and Devlin, Michelle and Heyden, Birgit and Machairopoulou, Margarita and Bresnan, Eileen and Schilder, Jos and Jakobsen, Hans H. and Llody-Hartley, Hannah and Tett, Paul and Best, Mike and Goberville, Eric and McQuatters-Gollop, Abigail}
}
@article {9108,
	title = {Marine invertebrates and noise},
	journal = {Frontiers in Marine Science},
	volume = {10},
	year = {2023},
	month = {March-07-2023},
	abstract = {Within the set of risk factors that compromise the conservation of marine biodiversity, one of the least understood concerns is the noise produced by human operations at sea and from land. Many aspects of how noise and other forms of energy may impact the natural balance of the oceans are still unstudied. Substantial attention has been devoted in the last decades to determine the sensitivity to noise of marine mammals{\textemdash}especially cetaceans and pinnipeds{\textemdash} and fish because they are known to possess hearing organs. Recent studies have revealed that a wide diversity of invertebrates are also sensitive to sounds, especially via sensory organs whose original function is to allow maintaining equilibrium in the water column and to sense gravity. Marine invertebrates not only represent the largest proportion of marine biomass and are indicators of ocean health but many species also have important socio-economic values. This review presents the current scientific knowledge on invertebrate bioacoustics (sound production, reception, sensitivity), as well as on how marine invertebrates are affected by anthropogenic noises. It also critically revisits the literature to identify gaps that will frame future research investigating the tolerance to noise of marine ecosystems.},
	keywords = {marine invertebrates, marine noise pollution, noise effects, particle motion, sound detection, sound pressure, sound production, statocyst},
	doi = {10.3389/fmars.2023.1129057},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2023.1129057/full},
	author = {Sol{\'e}, Marta and Kaifu, Kenzo and Mooney, T. Aran and Nedelec, Sophie L. and Olivier, Fr{\'e}d{\'e}ric and Radford, Andrew N. and Vazzana, Mirella and Wale, Matthew A. and Semmens, Jayson M. and Simpson, Stephen D. and Buscaino, Giuseppa and Hawkins, Anthony and Aguilar de Soto, Natacha and Akamatsu, Tomoari and Chauvaud, Laurent and Day, Ryan D. and Fitzgibbon, Quinn and McCauley, Robert D. and Andr{\'e}, Michel}
}
@article {9560,
	title = {Molecular and phenotypic effects of early exposure to an environmentally relevant pesticide mixture in the Pacific oyster, Crassostrea gigas.},
	journal = {Environmental Pollution},
	volume = {326},
	year = {2023},
	month = {Jan-06-2023},
	pages = {121472},
	issn = {02697491},
	doi = {10.1016/j.envpol.2023.121472},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0269749123004748},
	author = {Sol-Dourdin, Thomas and Guillaume Rivi{\`e}re and Cormier, Alexandre and Di Poi, Carole and Guyomard, Killian and Rabiller, Manuella and Akcha, Farida and Bah Sadialiou, Thierno and Le Monier, Pauline and Sussarellu, Rossana}
}
@article {9246,
	title = {Molecular ecology of the freshwater shrimp Caridina natalensis and comparative analysis with other amphidromous species (Decapoda, Teleostei, and Gastropoda)},
	journal = {Hydrobiologia},
	year = {2023},
	month = {Jun-26-2023},
	abstract = {Due to their life cycle shared between rivers and oceans, amphidromous organisms serve as intriguing models for studying biogeography. To investigate the implications of their unique life history, we examined the population structure of the amphidromous shrimp <em>Caridina natalensis</em> across its known range in the South Western Indian Ocean. A total of 118 specimens were collected from 7 islands (Mayotte, Moh{\'e}li, Mah{\'e}, Praslin, Silhouette, Mauritius and Madagascar) and the African mainland (South Africa), and their 16S rRNA and Cox1 mitochondrial genes were sequenced. Our findings reveal significant regional structure among archipelagos, suggesting complex patterns of dispersal involving successive events of extinction-recolonization. By conducting a comparative analysis with six other amphidromous species from the South Western Indian Ocean, based on literature sources, we were able to draw conclusions regarding the amphidromous biogeography of the area. Furthermore, we propose a novel classification of amphidromous species, considering their population structure and life history traits. We defined four categories of increasing dispersal abilities and decreasing genetic population structure: 1. Land-locked species; 2. Species with reduced or facultative amphidromy; 3. Species with common amphidromy; and 4. Super-amphidromous species. Lastly, we identified the Comoros Islands (namely Mayotte and Moh{\'e}li) as a critical area for the dispersal of amphidromous species, emphasizing the need for prioritizing conservation efforts in this region.},
	issn = {0018-8158},
	doi = {10.1007/s10750-023-05283-7},
	url = {https://link.springer.com/10.1007/s10750-023-05283-7},
	author = {de Mazancourt, Valentin and Ahmed Abdou and Castelin, Magalie and Ellien, C{\'e}line and Clara Lord and Marion Mennesson and Renneville, Cl{\'e}mentine and Marquet, G{\'e}rard and Philippe Keith}
}
@article {9117,
	title = {New insights into the diversity of cryptobenthic Cirripectes blennies in the Mascarene Archipelago sampled using Autonomous Reef Monitoring Structures (ARMS)},
	journal = {Ecology and Evolution},
	volume = {13},
	year = {2023},
	month = {Jan-03-2023},
	issn = {2045-7758},
	doi = {10.1002/ece3.v13.310.1002/ece3.9850},
	url = {https://onlinelibrary.wiley.com/toc/20457758/13/3},
	author = {Marion Cou{\"e}del and Dettai, Agn{\`e}s and Mireille M.M. Guillaume and Bruggemann, Fleur and Bureau, Sophie and Baptiste Frattini and Verde~Ferreira, Am{\'e}lie and Azie, Jean-Lindsay and Bruggemann, J. Henrich}
}
@article {9267,
	title = {Note technique : Estimation de l{\textquoteright}abondance du zooplancton g{\'e}latineux {\`a} partir de traits de chaluts},
	year = {2023},
	keywords = {campagnes optimis{\'e}es DCSMM, chalut, zooplancton g{\'e}latineux},
	doi = {10.13155/92936},
	url = {https://hal.science/hal-04003132},
	author = {Lheureux, Arnaud and Vaz, Sandrine and Antajan, Elvire and Vincent, Doroth{\'e}e and Lombard, Fabien and Goberville, Eric and Sacchi, Jacques and Morandeau, Fabien}
}
@article {9215,
	title = {Sex-specific seasonal variations in the fatty acid and carotenoid composition of sea cucumber gonads and implications for aquaculture},
	journal = {Marine Biology},
	volume = {170},
	year = {2023},
	month = {Jan-04-2023},
	issn = {0025-3162},
	doi = {10.1007/s00227-023-04198-0},
	url = {https://link.springer.com/10.1007/s00227-023-04198-0},
	author = {Frank David and Herault, Gwen and Ameziane, Nadia and Tarik Meziane and Badou, Aicha and C{\'e}dric Hubas}
}
@article {9274,
	title = {Threatened fish species in the Northeast Atlantic are functionally rare},
	journal = {Global Ecology and Biogeography},
	year = {2023},
	month = {Dec-07-2023},
	abstract = {The criteria used to define the International Union for Conservation of Nature (IUCN) Red List categories are essentially based on demographic parameters at the species level, but they do not integrate species{\textquoteright} traits or their roles in ecosystems. Consequently, current IUCN-based protection measures may not be sufficient to conserve ecosystem functioning and services. Some species may have a singular combination of traits associated with unique functions. Such functionally distinct species are increasingly recognized as a key facet of biodiversity since they are, by definition, functionally irreplaceable. The aim of this study is to investigate whether threatened species are also functionally rare and to identify which traits determine extinction risk.},
	issn = {1466-822X},
	doi = {10.1111/geb.13731},
	author = {Coulon, No{\'e}mie and Lindegren, Martin and Goberville, Eric and Toussaint, Aur{\`e}le and Receveur, Aurore and Arnaud Auber}
}
@article {9465,
	title = {The usefulness of food web models in the ecosystem services framework: Quantifying, mapping, and linking services supply},
	journal = {Ecosystem Services},
	volume = {63},
	year = {2023},
	month = {Jan-10-2023},
	pages = {101550},
	issn = {22120416},
	doi = {10.1016/j.ecoser.2023.101550},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2212041623000438},
	author = {Nogues, Quentin and Baulaz, Yoann and Clavel, Joanne and Araignous, Emma and Bourdaud, Pierre and Ben Rais Lasram, Frida and Dauvin, Jean-Claude and Girardin, Valerie and Halouani, Ghassen and Le Loc{\textquoteright}h, Francois and Loew-Turbout, Fr{\'e}d{\'e}rique and Raoux, Aurore and Nathalie Niquil}
}
@article {9006,
	title = {Anthropogenic Contaminants Shape the Fitness of the Endangered European Eel: A Machine Learning Approach},
	journal = {Fishes},
	volume = {7},
	year = {2022},
	month = {Jan-10-2022},
	pages = {274},
	abstract = {European eel is thought to be a symbol of the effects of global change on aquatic biodiversity. The species has persisted for millions of years and faced drastic environmental fluctuations thanks to its phenotypic plasticity. However, the species has recently declined to historically low levels under synergistic human pressures. Sublethal chemical contamination has been shown to alter reproductive capacity, but the impacts and required actions are not fully addressed by conservation plans. This paper proposes a modelling approach to quantify the effects of sublethal contamination by anthropogenic pollutants on the expression of life history traits and related fitness of the critically endangered European eel.\&nbsp;Material and Methods: We sampled female silver eels from eight different catchments across Europe previously shown to be representative of the spectrum of environmental variability and contamination. We measured 11 fitness-related life history traits within four main categories: fecundity, adaptability and plasticity, migratory readiness, and spawning potential. We used machine learning in models to explore the phenotypic reaction (expression of these life history traits) according to geographical parameters, parasite burdens (the introduced nematode\&nbsp;Anguillicoloides crassus) and anthropogenic contaminants (persistent organic pollutants (POPs) in muscular tissue and trace elements (TEs) in gonads, livers and muscles). Finally, we simulated, the effects of two management scenarios{\textemdash}contamination reduction and contamination increase{\textemdash}on the fecundity and recruitment.\&nbsp;Results: Contamination in our sampling was shown to have a stronger control on life history traits than do geographic and environmental factors that are currently described in the literature. We modelled different contamination scenarios to assess the benefit of mitigation: these scenarios suggest that reducing pollutants concentrations to the lowest values that occurred in our sampling design would double the fecundity of eels compared to the current situation.\&nbsp;Discussion: Remediation of contamination could represent a viable management option for increasing the resilience of eel populations, with much more effects than solely reducing fishing mortality. More broadly, our work provides an innovative way for quantitative assessment of the reaction norms of species{\textquoteright} biological traits and related fecundity to contamination by organic and inorganic pollutions thus opening new management and conservation pathways to revert the erosion of biodiversity.},
	doi = {10.3390/fishes7050274},
	url = {https://www.mdpi.com/2410-3888/7/5/274},
	author = {Bourillon, Bastien and Feunteun, Eric and Acou, Anthony and Trancart, Thomas and Teichert, Nils and Belpaire, Claude and Dufour, Sylvie and Bustamante, Paco and Aarestrup, Kim and Walker, Alan and Righton, David}
}
@article {8832,
	title = {Assessing the state of marine biodiversity in the Northeast Atlantic},
	journal = {Ecological Indicators},
	volume = {141},
	year = {2022},
	month = {Jan-08-2022},
	pages = {109148},
	issn = {1470160X},
	doi = {10.1016/j.ecolind.2022.109148},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1470160X22006203},
	author = {McQuatters-Gollop, A. and Gu{\'e}rin, L. and Arroyo, N.L. and Aubert, A. and Artigas, L.F. and Bedford, J. and Corcoran, E. and Dierschke, V. and Elliott, S.A.M. and Geelhoed, S.C.V. and Gilles, A. and Gonz{\'a}lez-Irusta, J.M. and Haelters, J. and Johansen, M. and Le Loc{\textquoteright}h, F. and Lynam, C.P. and Nathalie Niquil and Meakins, B. and Mitchell, I. and Padegimas, B. and Pesch, R. and Preciado, I. and Rombouts, I. and Safi, G. and Schmitt, P. and Sch{\"u}ckel, U. and Serrano, A. and Stebbing, P. and De la Torriente, A. and Vina-Herbon, C.}
}
@article {8759,
	title = {Bi-decadal changes in nutrient concentrations and ratios in marine coastal ecosystems: The case of the Arcachon bay, France},
	journal = {Progress in Oceanography},
	volume = {201},
	year = {2022},
	month = {Jan-02-2022},
	pages = {102740},
	issn = {00796611},
	doi = {10.1016/j.pocean.2022.102740},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0079661122000027},
	author = {Lheureux, A. and David, V. and Del Amo, Y. and Soudant, D. and Auby, I. and Ganthy, F. and Blanchet, H. and Cordier, M-A. and Costes, L. and Ferreira, S. and Mornet, L. and Nowaczyk, A. and Parra, M. and D{\textquoteright}Amico, F. and Gouriou, L. and Meteigner, C. and Oger-Jeanneret, H. and Rigouin, L. and Rumebe, M. and Tournaire, M-P. and Trut, F. and Trut, G. and Savoye, N.}
}
@article {8804,
	title = {Biologging of emperor penguins {\textendash} attachment techniques and associated deployment performance},
	journal = {PLoS ONE},
	year = {2022},
	doi = {10.1101/2021.06.08.446548},
	url = {https://hal.archives-ouvertes.fr/hal-03409952},
	author = {Houstin, Aymeric and Zitterbart, Daniel and Winterl, Alexander and Richter, Sebastian and Planas-Bielsa, V{\'\i}ctor and Chevallier, Damien and Ancel, Andr{\'e} and Fournier, J{\'e}r{\^o}me and Fabry, Ben and Le Bohec, C{\'e}line}
}
@article {8692,
	title = {Can~artificial~magnetic~fields~alter the~functional~role~of~the blue mussel, Mytilus edulis?},
	journal = {Marine Biology},
	volume = {169},
	year = {2022},
	month = {Jan-06-2022},
	abstract = {Along European coasts, the rapid expansion of marine renewable energy devices and their buried power cables, raises major societal concerns regarding the potential effects of their magnetic field emissions (MFs) on marine species and ecosystem functioning. MFs occur at a local spatial scale, which makes sessile species the primary target of chronic and high-intensity exposures. Some of them, as ecosystem engineers, have critical functions in coastal habitats whose behavioral alteration may drive profound consequences at the ecosystem level. In this context, the present experimental study explored the effects of short exposure to direct current MFs, on the feeding behavior of a widespread ecosystem engineer, the blue mussel (Mytilus edulis). A repeated measure design was carried out with adult mussels successively exposed to control treatment (ambient magnetic field of 47 μT) and artificial MF treatment (direct current of 300 μT produced by Helmholtz coils), as measured around power cables. The filtration activity was assessed through valve gap monitoring using an automated image analysis system. The clearance rate was estimated simultaneously by measuring the decrease in algal concentration using flow cytometry. Our findings revealed that mussels placed in MF treatment did not exhibit observable differences in valve activity and filtration rate, thus suggesting that, at such an intensity, artificial MFs do not significantly impair their feeding behavior. However, additional research is required to investigate the sensitivity of other life stages, the effects of mid to long-term exposure to alternative and direct current fields and to test various MF intensities.},
	keywords = {Coastal environments, Ecosystem engineers, Filter-feeders, Magnetic fields, Mytilus edulis, Submarine power cables},
	issn = {0025-3162},
	doi = {10.1007/s00227-022-04065-4},
	url = {https://link.springer.com/10.1007/s00227-022-04065-4},
	author = {Albert, Luana and Maire, Olivier and Fr{\'e}d{\'e}ric Olivier and Lambert, Christophe and Romero-Ramirez, Alicia and Jolivet, Aur{\'e}lie and Chauvaud, Laurent and Chauvaud, Sylvain}
}
@article {8409,
	title = {Carbon dynamics driven by seawater recirculation and groundwater discharge along a forest-dune-beach continuum of a high-energy meso-macro-tidal sandy coast},
	journal = {Geochimica et Cosmochimica Acta},
	volume = {317},
	year = {2022},
	month = {Jan-01-2022},
	pages = {18 - 38},
	issn = {00167037},
	doi = {10.1016/j.gca.2021.10.021},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016703721006244},
	author = {Charbonnier, C{\'e}line and Anschutz, Pierre and Gwena{\"e}l Abril and Mucci, Alfonso and Deirmendjian, Loris and Poirier, Dominique and Bujan, St{\'e}phane and Lecroart, Pascal}
}
@book {8753,
	title = {Chapter 6 - Fishes and Estuarine Environmental Health},
	year = {2022},
	pages = {332 - 379},
	publisher = {Wiley},
	organization = {Wiley},
	edition = {1},
	abstract = {This chapter addresses the use of fish as indicators of environmental health. The main anthropogenic pressures impacting estuarine fishes are reviewed, as well as the main types of responses by fishes at different levels of biological organisation. Fishes have been widely used to assess estuarine health through different methodological approaches, namely comparisons with historical data or reference conditions, experimental approaches, environmental impact or risk assessment methods, as well as qualitative or quantitative indicators and models. A large number of multi-metric indices based on fish have been proposed and are routinely used in environmental assessments, although to disentangle natural variability from anthropogenic pressures in a multi-stress context of global change is still a major challenge.},
	isbn = {9781444336672},
	doi = {10.1002/978111970534510.1002/9781119705345.ch6},
	url = {https://onlinelibrary.wiley.com/doi/book/10.1002/9781119705345},
	author = {Cabral, Henrique N. and Borja, Angel and Fonseca, Vanessa F. and Harrison, Trevor D. and Teichert, Nils and Lepage, Mario and Leal, Miguel C.},
	editor = {Whitfield, Alan K. and Able, Kenneth W. and Blaber, Stephen J.M. and Elliott, Michael}
}
@article {8534,
	title = {Chlordecone-contaminated epilithic biofilms show increased adsorption capacities},
	journal = {Science of The Total Environment},
	volume = {825},
	year = {2022},
	month = {Jan-06-2022},
	pages = {153942},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2022.153942},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969722010348},
	author = {C{\'e}dric Hubas and Monti, Dominique and Jean-Michel Mortillaro and Augagneur, Sylvie and Carbon, Anne and Duran, Robert and Karama, Solange and Tarik Meziane and Pardon, Patrick and Risser, Th{\'e}o and Tapie, Nathalie and Najet Thiney and Budzinski, H{\'e}l{\`e}ne and Lauga, B{\'e}atrice}
}
@article {8644,
	title = {Coastal ocean acidification in Brazil: a brief overview and perspectives},
	journal = {Arquivos de Ci{\^e}ncias do Mar},
	volume = {55},
	year = {2022},
	month = {Sep-03-2023},
	pages = {345 - 368},
	issn = {0374-5686},
	doi = {10.32360/acmar.v55iEspecial10.32360/acmar.v55iEspecial.78514},
	url = {http://periodicos.ufc.br/arquivosdecienciadomar/issue/view/1159},
	author = {Cotovicz Jr., Luiz C and Valente Marins, Rozane and Gwena{\"e}l Abril}
}
@article {8845,
	title = {Contrasting organic matter composition in pristine and eutrophicated mangroves revealed by fatty acids and stable isotopes (Rio de Janeiro, Brazil)},
	journal = {Estuarine, Coastal and Shelf Science},
	year = {2022},
	month = {Jan-09-2022},
	pages = {108061},
	abstract = {Mangrove sediments have a high capacity of carbon storage, as the result of larger organic matter (OM) inputs from mangrove trees (litter fall and fine roots production) than OM microbial degradation and export to coastal waters. Mangrove sediments also act as traps for suspended matter and particulate OM (POM) from surrounding water masses. Fatty acids (FAs) markers, δ13C and δ15N signatures were used here to characterize the OM composition in three mangroves located in three coastal embayments of the Rio de Janeiro state (Brazil) with increasing urbanization from a pristine mangrove M1 to a moderately impacted mangrove M2 and a highly impacted mangrove M3. In these mangroves, the δ15N signature of tree leaves and sediments increases with anthropogenic influence, consistent with a large-scale eutrophication gradient along the three regions. At mangrove M1, predominant OM inputs from mangrove trees are highlighted by high proportions of long-chain fatty acids, particularly in the inland station, where high organic carbon concentrations (126\&nbsp;{\textpm}\&nbsp;108\&nbsp;mg\&nbsp;g-1) indicate limited sedimentation of mineral particles and high carbon storage capacities. The sedimentary OM of M3 mangrove was more labile as confirmed by the higher proportions of algal fatty acids, enriched δ13C signature and the C/N ratio 1.6 times lower (p\&nbsp;\&lt;\&nbsp;0.001) than in the pristine mangrove M1. At the M2 mangrove site, high contribution of bacterial FAs (around 20\%) to sedimentary OM and high proportion of poorly biodegradable saturated fatty acids suggest that bacteria degrade algal labile OM in surface sediments but do not mineralize the most refractory fraction of OM. At the eutrophic M3 site, our findings suggest that deposition of labile POM induced an increase of fungal biomass on the sediment, apparently enhancing the microbial loop, and potentially leading to mineralization of refractory OM and carbon losses through a priming effect.},
	issn = {02727714},
	doi = {10.1016/j.ecss.2022.108061},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771422003195},
	author = {Chynel, Mathias and Rockomanovic, Sofia and Gwena{\"e}l Abril and Barroso, Glenda and Marotta, Humberto and Machado, Wilson and Sanders, Christian J. and Najet Thiney and Tarik Meziane}
}
@article {8955,
	title = {Dynamic evolution of transient receptor potential vanilloid (TRPV) ion channel family with numerous gene duplications and losses},
	journal = {Frontiers in Endocrinology},
	volume = {13},
	year = {2022},
	month = {Jan-11-2022},
	doi = {10.3389/fendo.2022.1013868},
	url = {https://www.frontiersin.org/articles/10.3389/fendo.2022.1013868/full},
	author = {Morini, Marina and Bergqvist, Christina A. and Asturiano, Juan F. and Larhammar, Dan and Sylvie Dufour}
}
@article {9003,
	title = {European flounder foraging movements in an estuarine nursery seascape inferred from otolith microchemistry and stable isotopes},
	journal = {Marine Environmental Research},
	volume = {182},
	year = {2022},
	month = {Jan-12-2022},
	pages = {105797},
	abstract = {Despite the importance of estuarine nurseries in the regulation of many fish stocks, temporal and spatial movements and habitat use patterns of juvenile fish remain poorly understood. Overall, combining several movement metrics allowed us to characterize dispersal patterns of juvenile flounder,\&nbsp;Platichthys flesus,\&nbsp;along an estuarine seascape. Specifically, we investigated otolith microchemistry signatures (Sr:Ca and Ba:Ca ratios) and stable isotope ratios (δ13C and δ15N) in muscles of these juveniles, during three consecutive years to assess inter-annual fluctuations in their home range and isotopic niches. The morphological condition and lipid content of individuals were lower in years of high as compared to low dispersal along the estuarine gradient. We discuss these results in relation to the ecosystem productivity and intra- and inter-specific competition level, which in turn affects movements and foraging behaviors of juvenile flounders.},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2022.105797},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0141113622002422},
	author = {Teichert, Nils and Liz{\'e}, Anne and Tabouret, H{\'e}l{\`e}ne and Roussel, Jean-Marc and Bareille, Gilles and Trancart, Thomas and Acou, Anthony and Virag, Laure-Sarah and Pecheyran, Christophe and Alexandre Carpentier and Feunteun, Eric}
}
@article {8736,
	title = {Expected contraction in the distribution ranges of demersal fish of high economic value in the Mediterranean and European SeasAbstract},
	journal = {Scientific Reports},
	volume = {12},
	year = {2022},
	month = {Jan-12-2022},
	abstract = {Fisheries and aquaculture are facing many challenges worldwide, especially adaptation to climate change. Investigating future distributional changes of largely harvested species has become an extensive research topic, aiming at providing realistic ecological scenarios on which to build management measures, to help fisheries and aquaculture adapt to future climate-driven changes. Here, we use an ensemble modelling approach to estimate the contemporary and future distributional range of eight demersal fish species of high economic value in the Mediterranean Sea. We identify a cardinal influence of (i) temperature on fish species distributions, all being shaped by yearly mean and seasonality in sea bottom temperature, and (ii) the primary production. By assessing the effects of changes in future climate conditions under three Representative Concentration Pathway (RCP2.6, RCP4.5 and RCP8.5) scenarios over three periods of the twenty-first century, we project a contraction of the distributional range of the eight species in the Mediterranean Sea, with a general biogeographical displacement towards the North European coasts. This will help anticipating changes in future catch potential in a warmer world, which is expected to have substantial economic consequences for Mediterranean fisheries.},
	doi = {10.1038/s41598-022-14151-8},
	url = {https://www.nature.com/articles/s41598-022-14151-8},
	author = {Ben Lamine, Emna and Schickele, Alexandre and Goberville, Eric and Beaugrand, Gr{\'e}gory and Allemand, Denis and Raybaud, Virginie}
}
@article {8713,
	title = {Fibropapillomatosis Prevalence and Distribution in Immature Green Turtles (Chelonia mydas) in Martinique Island (Lesser Antilles)},
	journal = {EcoHealth},
	year = {2022},
	month = {Mar-06-2022},
	issn = {1612-9202},
	doi = {10.1007/s10393-022-01601-y},
	url = {https://link.springer.com/10.1007/s10393-022-01601-y},
	author = {Roost, Thibaut and Schies, Jo-Ann and Girondot, Marc and Robin, Jean-Patrice and Lelong, Pierre and Martin, Jordan and Siegwalt, Flora and Jeantet, Lor{\`e}ne and Giraudeau, Mathieu and Le Loch, Guillaume and Bejarano, Manola and Bonola, Marc and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Andreani, Lucas and Jacaria, Fran{\c c}ois and Campistron, Guilhem and Lathi{\`e}re, Anthony and Martial, Fran{\c c}ois and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and R{\'e}gis, Sidney and Lecerf, Nicolas and Frouin, C{\'e}dric and Lefebvre, Fabien and Aubert, Nathalie and Flora, Fr{\'e}d{\'e}ric and Pimentel, Esteban and Lafolle, Rachelle and Thobor, Florence and Arthus, Mosiah and Etienne, Denis and Lecerf, Natha{\"e}l and All{\'e}nou, Jean-Pierre and Desigaux, Florian and Larcher, Eug{\`e}ne and Larcher, Christian and Curto, Alberto Lo and Befort, Joanne and Maceno-Panevel, Myriane and Lepori, Muriel and Chevallier, Pascale and Chevallier, Tao and Meslier, St{\'e}phane and Landreau, Anthony and Habold, Caroline and Le Maho, Yvon and Chevallier, Damien}
}
@article {8714,
	title = {Food selection and habitat use patterns of immature green turtles (Chelonia mydas) on Caribbean seagrass beds dominated by the alien species Halophila stipulacea},
	journal = {Global Ecology and Conservation},
	volume = {37},
	year = {2022},
	month = {Jan-09-2022},
	pages = {e02169},
	issn = {23519894},
	doi = {10.1016/j.gecco.2022.e02169},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2351989422001718},
	author = {Siegwalt, Flora and Jeantet, Lor{\`e}ne and Lelong, Pierre and Martin, Jordan and Girondot, Marc and Bustamante, Paco and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Andreani, Lucas and Jacaria, Fran{\c c}ois and Campistron, Guilhem and Lathi{\`e}re, Anthony and Barotin, Charl{\`e}ne and Buret-Rochas, Ga{\"e}lle and Barre, Philippe and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and R{\'e}gis, Sidney and Lecerf, Nicolas and Frouin, C{\'e}dric and Lefebvre, Fabien and Aubert, Nathalie and Arthus, Mosiah and Etienne, Denis and All{\'e}nou, Jean-Pierre and Delnatte, C{\'e}sar and Lafolle, Rachelle and Thobor, Florence and Chevallier, Pascale and Chevallier, Tao and Lepori, Muriel and Assio, Cindy and Grand, Cl{\'e}ment and Bonola, Marc and Tursi, Yannick and Varkala, Pierre-Walter and Meslier, St{\'e}phane and Landreau, Anthony and Le Maho, Yvon and Habold, Caroline and Robin, Jean-Patrice and Chevallier, Damien}
}
@article {8821,
	title = {A functional vulnerability framework for biodiversity conservation},
	journal = {Nature Communications},
	volume = {13},
	year = {2022},
	month = {Sep},
	pages = {4774},
	abstract = {Setting appropriate conservation strategies in a multi-threat world is a challenging goal, especially because of natural complexity and budget limitations that prevent effective management of all ecosystems. Safeguarding the most threatened ecosystems requires accurate and integrative quantification of their vulnerability and their functioning, particularly the potential loss of species trait diversity which imperils their functioning. However, the magnitude of threats and associated biological responses both have high uncertainties. Additionally, a major difficulty is the recurrent lack of reference conditions for a fair and operational measurement of vulnerability. Here, we present a functional vulnerability framework that incorporates uncertainty and reference conditions into a generalizable tool. Through in silico simulations of disturbances, our framework allows us to quantify the vulnerability of communities to a wide range of threats. We demonstrate the relevance and operationality of our framework, and its global, scalable and quantitative comparability, through three case studies on marine fishes and mammals. We show that functional vulnerability has marked geographic and temporal patterns. We underline contrasting contributions of species richness and functional redundancy to the level of vulnerability among case studies, indicating that our integrative assessment can also identify the drivers of vulnerability in a world where uncertainty is omnipresent.},
	issn = {2041-1723},
	doi = {10.1038/s41467-022-32331-y},
	url = {https://doi.org/10.1038/s41467-022-32331-y},
	author = {Auber, Arnaud and Waldock, Conor and Maire, Anthony and Goberville, Eric and Albouy, Camille and Algar, Adam C. and McLean, Matthew and Brind{\textquoteright}Amour, Anik and Green, Alison L. and Tupper, Mark and Vigliola, Laurent and Kaschner, Kristin and Kesner-Reyes, Kathleen and Beger, Maria and Tjiputra, Jerry and Toussaint, Aur{\`e}le and Violle, Cyrille and Mouquet, Nicolas and Thuiller, Wilfried and Mouillot, David}
}
@article {8976,
	title = {Histological study of the oral teeth and their bony support in the Mexican Jurassic gar {\textdagger}Nhanulepisosteus mexicanus (Ginglymodii, Lepisosteidae)},
	year = {2022},
	abstract = {The palaeohistology of the teeth and bony skeleton of the Late Jurassic gar {\textdagger}Nhanulepisosteus mexi-canus\&nbsp;is described in detail from thin sections. The teeth are composed of a cone of orthodentine with a pulp cavity filled with parallel canals of osteodentine as variety of eusthenodont type plicidentine. These conspicu-ous histological features differentiate {\textdagger}Nhanulepisosteus\&nbsp;from the majority of extant and fossil lepisosteids. The teeth are crowned with a small apical cap of acrodine, and are surrounded by a ridged layer of enamel. The bony tissues contain star-shaped osteocytes and canaliculi of Williamson matching exactly those in living lepisosteids, other holosteans, and some basal teleosts. Although the dental histology is distinct from that of extant gar spe-cies, we consider these differences are related to eco-morphological factors, noting that this pattern of histologi-cal arrangement is also found in other fossil gar species.},
	keywords = {Bone, Jurassic, Lepisosteidae, Palaeohistology, plicidentine, Teeth, {\textdagger}Nhanulepisosteus},
	doi = {10.26028/CYBIUM/2022-461-002},
	url = {https://www.sfi-cybium.fr/fr/histological-study-oral-teeth-and-their-bony-support-mexican-jurassic-gar-{\textdagger}nhanulepisosteus},
	author = {Brito, Paulo M. and Alvarado-Ortega, J{\'e}sus and Fran{\c c}ois J Meunier}
}
@article {8703,
	title = {Increasing numbers of killer whale individuals use fisheries as feeding opportunities within subantarctic populations},
	journal = {Biology Letters},
	volume = {18},
	year = {2022},
	month = {Jan-02-2022},
	doi = {10.1098/rsbl.2021.0328},
	url = {https://royalsocietypublishing.org/doi/10.1098/rsbl.2021.0328},
	author = {Amelot, Morgane and Plard, Floriane and Guinet, Christophe and Arnould, John P. Y. and Nicolas Gasco and Tixier, Paul}
}
@article {8448,
	title = {Insights into the behavioural responses of juvenile thornback ray},
	journal = {Journal of Fish Biology},
	year = {2022},
	month = {Apr-01-2022},
	abstract = {As part of energy transition, marine renewable energy devices (MRED) are currently expanding in developed countries inducing the deployment of dense networks of submarine power cables. Concern has thus raised about the cable magnetic emissions (direct or alternating current) because of potential interference with the sensorial environment of magneto-sensitive species, such as sharks and rays. This study sought to assess the short-term behavioural responses of juvenile thornback rays (Raja clavata) (n = 15) to direct and alternating (50 Hz) uniform 450-μT artificial magnetic fields using 1 h focal-sampling design based on a detailed ethogram. Careful control of magnetic fields{\textquoteright} temporal and spatial scales was obtained in laboratory conditions through a custom-made Helmholtz coil device. Overall, qualitative or quantitative behavioural responses of juvenile rays did not significantly vary between control vs. exposed individuals over the morning period. Nonetheless, rays under direct current magnetic field increased their activity over the midday period. Synchronisation patterns were also observed for individuals receiving alternating current exposure (chronologic and qualitative similarities) coupled with a high interindividual variance. Further studies should consider larger batches of juveniles to address the effect of long-term exposure and explore the sensitivity range of rays with dose-response designs.},
	issn = {0022-1112},
	doi = {10.1111/jfb.14978},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/jfb.14978},
	author = {Albert, Luana and Fr{\'e}d{\'e}ric Olivier and Jolivet, Aur{\'e}lie and Chauvaud, Laurent and Chauvaud, Sylvain}
}
@article {8855,
	title = {Linking eutrophication to carbon dioxide and methane emissions from exposed mangrove soils along an urban gradient},
	journal = {Science of The Total Environment},
	volume = {850},
	year = {2022},
	month = {Jan-12-2022},
	pages = {157988},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2022.157988},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969722050872},
	author = {Barroso, Glenda C. and Gwena{\"e}l Abril and Machado, Wilson and Abuchacra, Rodrigo C. and Peixoto, Roberta B. and Bernardes, Marcelo and Marques, Gabriela S. and Sanders, Christian J. and Oliveira, Gabriela B. and Oliveira Filho, Silvio R. and Amora-Nogueira, Leonardo and Marotta, Humberto}
}
@article {8356,
	title = {Macrozooplankton and micronekton diversity and associated carbon vertical patterns and fluxes under distinct productive conditions around the Kerguelen Islands},
	journal = {Journal of Marine Systems},
	volume = {226},
	year = {2022},
	month = {Jan-02-2022},
	pages = {103650},
	issn = {09247963},
	doi = {10.1016/j.jmarsys.2021.103650},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0924796321001457},
	author = {Cott{\'e}, C. and Ariza, A. and Berne, A. and Habasque, J. and Lebourges-Dhaussy, A. and Roudaut, G. and Espinasse, B. and Hunt, B.P.V. and Pakhomov, E.A. and Henschke, N. and Clara P{\'e}ron and Conchon, A. and Koedooder, C. and Izard, L. and Cherel, Y.}
}
@article {8884,
	title = {Managing biological invasions: the cost of inaction},
	journal = {Biological Invasions},
	volume = {24},
	year = {2022},
	month = {Jan-07-2022},
	pages = {1927 - 1946},
	issn = {1387-3547},
	doi = {10.1007/s10530-022-02755-0},
	url = {https://link.springer.com/10.1007/s10530-022-02755-0},
	author = {Ahmed, Danish A. and Hudgins, Emma J. and Cuthbert, Ross N. and Kourantidou, Melina and Diagne, Christophe and Haubrock, Phillip J. and Leung, Brian and Liu, Chunlong and Leroy, Boris and Petrovskii, Sergei and Beidas, Ayah and Courchamp, Franck}
}
@article {8752,
	title = {Modelling past migrations to determine efficient management rules favouring silver eel escapement from a large regulated Floodplain Lake},
	journal = {Journal for Nature Conservation},
	volume = {67},
	year = {2022},
	month = {Jan-06-2022},
	pages = {126192},
	abstract = {As human activities caused a dramatic decline of European eel population since the 1970\&nbsp;s, the European Union has set targets to ensure a 40\%\&nbsp;escapement\&nbsp;to the sea of the silver eel biomass by considerably reducing anthropogenic impact. Thus, human obstacles to fish migration like dams and hydropower plants should enable efficient management measures ensuring safe passage for eels during the migration. In order to provide a quick and efficient assessment of eel conservation measure applied to the\&nbsp;sluice gates\&nbsp;of a large\&nbsp;floodplain\&nbsp;lake, we implemented a novel evaluation method using predictions on past migration seasons when no management measure were applied. For this purpose, we collected acoustic\&nbsp;telemetry\&nbsp;monitoring data over three migration seasons and fitted a predictive model based on Boosted Regression Trees (BRTs) to describe the influence of environmental parameters on migration. The water level difference over two days proved to be decisive, along with early migration occasions in the season, as an increase of at least 10\&nbsp;cm water level was associated with a sharp increase of migration probability. We then used the BRT model to predict migration occasions at the dam over 8 past seasons and forecast the impact on escapement of management measures if they had been applied. Thanks to this original prospective assessment of dam management measures, we identified an enhanced opening decision rule, capable of increasing the eel escapement for each year of the study. The management measure is particularly efficient during the years with poor hydrological conditions (i.e. droughts), that is the periods with the lowest initial escapement rates. Finally, efficient management measures to increase silver eel escapement were based on increasing the number of\&nbsp;gate opening\&nbsp;days by only a few days per year (c.a. 15\%). However, the management measure only focused on silver eel migration, so that further investigations should consider the impacts of other threats occurring during the life cycle. This study also provides a highly operational approach for fast evaluation of conservation measures, avoiding lengthy and expensive monitoring campaigns of classical ex-post assessments.},
	keywords = {Eel conservation, fish migration, Predictive model, Reservoir management},
	issn = {16171381},
	doi = {10.1016/j.jnc.2022.126192},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1617138122000656},
	author = {Bourgeaux, Jacques and Teichert, Nils and Gillier, Jean-Marc and Danet, Valentin and Eric Feunteun and Acou, Anthony and Charrier, Fabien and Mazel, Virgile and Alexandre Carpentier and Trancart, Thomas}
}
@article {9036,
	title = {Modelling the distribution of vulnerable skate from fisheries dependent data using imperfect detection},
	journal = {Progress in Oceanography},
	volume = {206},
	year = {2022},
	month = {Jan-08-2022},
	pages = {102859},
	issn = {00796611},
	doi = {10.1016/j.pocean.2022.102859},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0079661122001185},
	author = {Bisch, Ama{\"e}lle and Elliott, Sophie A.M. and Alexandre Carpentier and Acou, Anthony}
}
@article {8599,
	title = {A multi-approach study to reveal eel life-history traits in an obstructed catchment before dam removal},
	journal = {Hydrobiologia},
	year = {2022},
	month = {Sep-03-2022},
	abstract = {River fragmentation is expected to impact not only movement patterns and distribution of eels within catchment, but also their life-history traits. Here, we used otolith multi-elemental signatures to reconstruct life sequences of European silver eels within an obstructed catchment, just before the removal of hydropower dams. Beyond providing an initial state, we hypothesized that otolith signatures can provide crucial information on the way eels use the watershed. Indeed, their spatial distribution is expected to shape life-history traits, including condition coefficient, trophic level, growth rate, or infection by metazoan parasites. While Sr:Ca and Ba:Ca ratios were complementary in tracing fish movements between freshwater and estuary, the Ba:Ca variations allowed to discriminate three freshwater sectors. The eels assigned to the midstream sector were more mobile and exhibited lower growth rates, probably in response to higher competition at the vicinity of dams. While most eels are currently produced by downstream and midstream sectors, eels assigned to upper reaches of connected tributaries generally display higher richness in native parasite and higher body condition and lipid reserve, known to promote the success of migration and reproduction. In the near future, the dam removals will represent an outstanding experimental framework for evaluating impacts of catchment reconnection.},
	keywords = {LA-ICP-MS, life-history trait, metazoan parasites, otolith microchemistry, phenotypic plasticity, river barrier},
	issn = {0018-8158},
	doi = {10.1007/s10750-022-04833-9},
	url = {https://link.springer.com/10.1007/s10750-022-04833-9},
	author = {Teichert, Nils and Liz{\'e}, Anne and Tabouret, H{\'e}l{\`e}ne and G{\'e}rard, Claudia and Bareille, Gilles and Acou, Anthony and Alexandre Carpentier and Trancart, Thomas and Virag, Laure-Sarah and Robin, Emma and Druet, Morgan and Prod{\textquoteright}Homme, Jordan and Eric Feunteun}
}
@article {8600,
	title = {Multi-method approach shows stock structure in Loligo forbesii squid},
	journal = {ICES Journal of Marine Science},
	year = {2022},
	month = {03},
	abstract = {Knowledge of stock structure is a priority for effective assessment of commercially-fished cephalopods. Loligo forbesii squid are thought to migrate inshore for breeding and offshore for feeding and long-range movements are implied from past studies showing genetic homogeneity in the entire neritic population. Only offshore populations (Faroe and Rockall Bank) were considered distinct. The present study applied mitchondrial and microsatellite markers (nine loci) to samples from Rockall Bank, north Scotland, North Sea, various shelf locations in Ireland, English Channel, northern Bay of Biscay, north Spain, and Bay of Cadiz. No statistically significant genetic sub-structure was found, although some non-significant trends involving Rockall were seen using microsatellite markers. Differences in L. forbesii statolith shape were apparent at a subset of locations, with most locations showing pairwise differences and statoliths from north Ireland being highly distinct. This suggests that (i) statolith shape is highly sensitive to local conditions and (ii) L. forbesii forms distinguishable groups (based on shape statistics), maintaining these groups over sufficiently long periods for local conditions to affect the shape of the statolith. Overall evidence suggests that L. forbesii forms separable (ecological) groups over short timescales with a semi-isolated breeding group at Rockall whose distinctiveness varies over time.},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsac039},
	url = {https://doi.org/10.1093/icesjms/fsac039},
	author = {Sheerin, Edel and Barnwall, Leigh and Abad, Esther and Larivain, Angela and Oesterwind, Daniel and Petroni, Michael and Perales-Raya, Catalina and Jean-Paul Robin and Sobrino, Ignacio and Valeiras, Julio and O{\textquoteright}Meara, Denise and Pierce, Graham J and Allcock, A Louise and Power, Anne Marie}
}
@article {8797,
	title = {New Insights Into the Evolution of Corticotropin-Releasing Hormone Family With a Special Focus on Teleosts},
	journal = {Frontiers in Endocrinology},
	volume = {13},
	year = {2022},
	pages = {937218},
	doi = {Doi: 10.3389/fendo.2022.937218},
	author = {Maugars, Gersende and Mauvois, Xavier and Martin, Patrick and Rousseau, Karine and Aroua, Salima and Sylvie Dufour}
}
@article {8739,
	title = {Passive acoustics suggest two different feeding mechanisms in the Atlantic walrus (Odobenus rosmarus rosmarus)},
	journal = {Polar Biology},
	year = {2022},
	month = {Sep-06-2023},
	abstract = {The vocal repertoire of walruses has been widely described in the bioacoustic literature. These marine mammals produce several distinct types of vocalizations for intraspecific communication during the breeding season. In this study, we provide the first evidence of walrus-generated sounds during foraging dives when they feed on bivalves. We recorded two types of sounds that we associated to different feeding mechanisms. The first sound type was brief and low in frequency that we relate to the suction of soft parts from the bivalves{\textquoteright} shells through the use of walrus powerful tongues, which is the common feeding behavior reported in the walrus literature. We also recorded a second sound type composed of multiple broadband pulse trains. We hypothesize the latter were associated with bivalve shell cracking by walruses, which would represent a new feeding mechanism in the walrus literature. This new feeding mechanism is either related to bivalves{\textquoteright} ecology or to walruses removing the sediment when searching for food. During this study, we observed bivalves lying on the seafloor instead of being buried in the sediment in walrus feeding areas while scuba diving. As a result, walruses cannot use suction to feed on soft body part of bivalves and have to use another strategy, mastication. Our findings provide a first step towards using passive acoustics to quantify walrus behavior and feeding ecology.},
	keywords = {Bioacoustics, bivalves, Feeding Behavior, Marine mammal, Young Sound fjord},
	issn = {0722-4060},
	doi = {10.1007/s00300-022-03055-y},
	url = {https://link.springer.com/10.1007/s00300-022-03055-y},
	author = {J{\'e}z{\'e}quel, Youenn and Mathias, Delphine and Fr{\'e}d{\'e}ric Olivier and Amice, Erwan and Chauvaud, Sylvain and Jolivet, Aur{\'e}lie and Bonnel, Julien and Sejr, Mikael K. and Chauvaud, Laurent}
}
@article {9005,
	title = {A possible strong impact of tidal power plant on silver eels{\textquoteright} migration},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {278},
	year = {2022},
	month = {Jan-11-2022},
	pages = {108116},
	abstract = {Very few\&nbsp;tidal power\&nbsp;plants exist in the world. The first one was built in the Rance\&nbsp;estuary\&nbsp;(Brittany, France) in 1966 and the second one in South Korea. However, with the increasing demand in renewable energy, other tidal power plant projects are being studied.<br>
<br>
These power plants are larger than unidirectional fluvial hydropower plants and strongly modify the natural\&nbsp;tidal cycle\&nbsp;in estuarine systems. As such, their effect on megafaunal movements might strongly differ from those caused by unidirectional fluvial hydropower plants and should be specifically considered and studied before the development of similar constructions.<br>
<br>
In this study, an acoustic\&nbsp;telemetry\&nbsp;array was deployed to track 25 silver eels released 16\&nbsp;km upstream of the Rance tidal power dam. Only 1/3 of the tagged eels passed the dam and reached the sea. Data suggested that eels interrupted their migration up to 5\&nbsp;km upstream of the dam. We assume that the noise and tidal disturbance generated by the dam could lead to a disruption of a high proportion of silver eels{\textquoteright} reproductive migration.},
	issn = {02727714},
	doi = {10.1016/j.ecss.2022.108116},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771422003742},
	author = {Trancart, Thomas and Teichert, Nils and Lamoureux, J{\'e}zabel and Gharnit, Elouana and Acou, Anthony and de Oliveira, Eric and Roy, Romain and Feunteun, Eric}
}
@article {8834,
	title = {Potential combined impacts of climate change and non-indigenous species arrivals on Bay of Biscay trophic network structure and functioning},
	journal = {Journal of Marine Systems},
	volume = {228},
	year = {2022},
	month = {Jan-04-2022},
	pages = {103704},
	issn = {09247963},
	doi = {10.1016/j.jmarsys.2022.103704},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0924796322000070},
	author = {Le Marchand, M. and Ben Rais Lasram, F. and Araignous, E. and Saint-B{\'e}at, B. and Lassalle, G. and Michelet, N. and Serre, S. and Safi, G. and Lejart, M. and Nathalie Niquil and Le Loc{\textquoteright}h, F.}
}
@article {8447,
	title = {Pull the trigger: interplay between benthic and pelagic cues driving the early recruitment of a natural bivalve assemblage},
	journal = {Ecosphere},
	volume = {13},
	year = {2022},
	month = {Jan-01-2022},
	abstract = {Larval settlement and recruitment are crucial phases in the benthic-pelagic life cycle of marine benthic invertebrates that controls population dynamic and habitat connectivity. Our study investigated potential triggers driving the settlement of bivalve larvae in a highly dynamic intertidal coarse sand habitat. The early recruitment rate of five dominant bivalve families and abiotic conditions, particulate (\&lt;20 {\textmu}m) organic matter and sediment organic matter, were monitored from May to October 2014. Pelagic particulate organic matter (\&lt;20 {\textmu}m) was dominated by picoplankton throughout the sampling period, with a substantial diatom bloom in spring. Sediment was characterized by fresh organic matter in spring, as suggested by the dominant contribution of polyunsaturated fatty acids, and by a higher proportion of bacterial fatty acid markers during late summer. Different dynamics were also observed in early bivalve recruitment rates, with four different patterns observed over the sampling period. Multiple regression analysis on selected bivalve families showed species-specific responses to trophic settlement triggers. Indeed, the larva recruitment rate of Mytilidae paralleled pelagic concentration of picoeucaryotes, with the peak early recruitment rate occurring in spring. Surprisingly, the early recruitment rate of Mactridae larvae showed a significant relation to bacterial concentration in the surficial sediment at the end of summer. While the Mytilidae results in such a eutrophic system confirmed those of a previous study in oligotrophic lagoons, therefore supporting the trophic settlement trigger hypothesis, more work is needed to understand the potential role of bacteria in the early recruitment of Mactridae. These results highlight for the first-time inter-specific differences in trophic cues that potentially trigger primary settlement in natural bivalve assemblages.},
	keywords = {bacteria, bivalves, Chausey Archipelago, early larval recruitment, fatty acids, picoeucaryotes, trophic settlement trigger},
	issn = {2150-8925},
	doi = {10.1002/ecs2.v13.110.1002/ecs2.3672},
	url = {https://onlinelibrary.wiley.com/toc/21508925/13/1},
	author = {Androuin, Thibault and Barbier, Pierrick and Foret, Martin and Tarik Meziane and Thomas, Mathilde and Archambault, Philippe and Winkler, Gesche and Tremblay, Rejean and Fr{\'e}d{\'e}ric Olivier}
}
@article {8835,
	title = {The Response of North Sea Ecosystem Functional Groups to Warming and Changes in Fishing},
	journal = {Frontiers in Marine Science},
	volume = {9},
	year = {2022},
	month = {Apr-04-2022},
	doi = {10.3389/fmars.2022.841909},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2022.841909/full},
	author = {Thorpe, Robert B. and Arroyo, Nina L. and Safi, Georges and Nathalie Niquil and Preciado, Izaskun and Heath, Michael and Pace, Matthew C. and Lynam, Christopher P.}
}
@article {8898,
	title = {Seasonal and diel modulation of DOM in a mangrove-dominated estuary},
	journal = {Science of The Total Environment},
	year = {2022},
	month = {Jan-09-2022},
	pages = {159045},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2022.159045},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969722061447},
	author = {Vidal, L.O. and Lambert, T. and Cotovicz Jr., L.C. and Bernardes, M.C. and Sobrinho, R. and Thompson, F. and Garcia, G.D. and Knoppers, B.A. and Gatts, P.V. and R{\'e}gis, C.R. and Abril, G. and Rezende, C.E.}
}
@article {8854,
	title = {Seasonal, Diurnal, and Tidal Variations of Dissolved Inorganic Carbon and pCO2 in Surface Waters of a Temperate Coastal Lagoon (Arcachon, SW France)},
	journal = {Estuaries and Coasts},
	year = {2022},
	month = {Apr-09-2023},
	issn = {1559-2723},
	doi = {10.1007/s12237-022-01121-6},
	url = {https://link.springer.com/10.1007/s12237-022-01121-6},
	author = {Polsenaere, Pierre and Delille, Bruno and Poirier, Dominique and Charbonnier, C{\'e}line and Deborde, Jonathan and Mouret, Aur{\'e}lia and Gwena{\"e}l Abril}
}
@article {8696,
	title = {Seasonal dynamics of marine protist communities in tidally mixed coastal waters},
	journal = {Molecular Ecology},
	year = {2022},
	month = {Aug-05-2023},
	abstract = {Major seasonal community reorganizations and associated biomass variations are landmarks of plankton ecology. However, the processes of plankton community turnover rates have not been fully elucidated so far. Here, we analyse patterns of planktonic protist community succession in temperate latitudes, based on quantitative taxonomic data from both microscopy counts (cells \&gt; 10 μm) and ribosomal DNA metabarcoding (size fraction \&gt; 3 μm, 18S rRNA gene) from plankton samples collected biweekly over 8 years (2009-2016) at the SOMLIT-Astan station (Roscoff, Western English Channel). Based on morphology, diatoms were clearly the dominating group all year round and over the study period. Metabarcoding uncovered a wider diversity spectrum and revealed the prevalence of Dinophyceae and diatoms but also of Cryptophyta, Chlorophyta, Cercozoa, Syndiniales and Ciliophora in terms of read counts and or richness. The use of morphological and molecular analyses in combination allowed improving the taxonomic resolution and to identify the sequence of the dominant species and OTUs (18S V4 rDNA-derived taxa) that drive annual plankton successions. We detected that some of these dominant OTUs were benthic as a result of the intense tidal mixing typical of the French coasts in the English Channel. Our analysis of the temporal structure of community changes point to a strong seasonality and resilience. The temporal structure of environmental variables (especially Photosynthetic Active Radiation, temperature and macronutrients) and temporal structures generated by species life cycles and or species interactions, are key drivers of the observed cyclic annual plankton turnover.},
	issn = {0962-1083},
	doi = {10.1111/mec.16539},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/mec.16539},
	author = {Caracciolo, Mariarita and Rigaut-Jalabert, Fabienne and Romac, Sarah and Mah{\'e}, Fr{\'e}d{\'e}ric and Forsans, Samuel and Gac, Jean-Philippe and Arsenieff, Laure and Manno, Maxime and Chaffron, Samuel and Cariou, Thierry and Hoebeke, Mark and Bozec, Yann and Goberville, Eric and Le Gall, Florence and Guilloux, Lo{\"\i}c and Baudoux, Anne-Claire and de Vargas, Colomban and Not, Fabrice and Thi{\'e}baut, Eric and Henry, Nicolas and Simon, Nathalie}
}
@article {8833,
	title = {Spatialized ecological network analysis for ecosystem-based management: effects of climate change, marine renewable energy, and fishing on ecosystem functioning in the Bay of SeineAbstract},
	journal = {ICES Journal of Marine Science},
	volume = {79},
	year = {2022},
	month = {Dec-02-2023},
	pages = {1098 - 1112},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsac026},
	url = {https://academic.oup.com/icesjms/article/79/4/1098/6535870},
	author = {Nogues, Quentin and Araignous, Emma and Bourdaud, Pierre and Halouani, Ghassen and Raoux, Aurore and Foucher, Eric and Loc{\textquoteright}h, Fran{\c c}ois Le and Loew-Turbout, Fr{\'e}d{\'e}rique and Ben~Rais~Lasram, Frida and Dauvin, Jean-Claude and Nathalie Niquil}
}
@article {8643,
	title = {SPREADING EUTROPHICATION AND CHANGING  CO2 FLUXES IN THE TROPICAL COASTAL OCEAN:  A FEW LESSONS FROM RIO DE JANEIRO},
	journal = {Arquivos de Ci{\^e}ncias do Mar},
	volume = {55},
	year = {2022},
	month = {Sep-03-2023},
	pages = {461 - 476},
	issn = {0374-5686},
	doi = {10.32360/acmar.v55iEspecial10.32360/acmar.v55iEspecial.78518},
	url = {http://periodicos.ufc.br/arquivosdecienciadomar/issue/view/1159},
	author = {Gwena{\"e}l Abril and C. Cotovicz Jr., Luiz and Nepomuceno, Aguinaldo and Erbas, Tha{\'\i}s and Costa, Suzan and V. Ramos, Vinicius and Moser, Gleyci and Fernandes, Alexandre and Negri, Eduardo and A. Knoppers, Bastiaan and Brandini, Nilva and Machado, Wilson and Bernardes, Marcelo and Vantrepotte, Vincent}
}
@article {8769,
	title = {Temporal variations in the level of chlordecone in seawater and marine organisms in Martinique Island (Lesser Antilles)},
	journal = {Environmental Science and Pollution Research},
	year = {2022},
	month = {Oct-06-2023},
	abstract = {The present study, conducted in the Galion Bay in Martinique, aims to highlight the temporal and seasonal variations of chlordecone contamination (an organochlorine pollutant) in the ambient environment (seawater) but also in the marine organisms in three main coastal marine habitats (mangroves, seagrass beds and coral reefs). To this end, two methodologies were used to measure and compare the chemical contamination of seawater during 13 months (spot samplings and POCIS technique). In parallel, concentrations of chlordecone and isotopic ratios (C and N) were carried out on marine organisms, collected during two contrasting climatic periods (dry and rainy), to evidence seasonal variations. The results showed that the contamination of seawater displayed significant variations over time and depended on environmental factors such as water flows, which imply dilution and dispersion phenomena. Concerning the marine organisms, the level of contamination varied considerably between the two seasons in seagrass beds with higher levels of contamination during the rainy season. Reef organisms were more moderately affected by this pollution, while mangrove organisms showed a high level of chlordecone whatever the season. Finally, isotope analyses highlighted that bioamplification along marine food-webs occurs at each season and each station.},
	keywords = {coral reef, Mangrove, organochlorine pollution, passive samplers, seagrass, Stable isotopes},
	issn = {0944-1344},
	doi = {10.1007/s11356-022-21528-9},
	url = {https://link.springer.com/10.1007/s11356-022-21528-9},
	author = {Charlotte R. Dromard and All{\'e}nou, Jean-Pierre and Tapie, Nathalie and Budzinski, H{\'e}l{\`e}ne and Cimmaterra, Nicolas and De Rock, Pauline and Arkam, Salim and Cordonnier, S{\'e}bastien and Gonzalez, Jean-Louis and Bouchon-Navaro, Yolande and Bouchon, Claude and Thouard, Emmanuel}
}
@article {8707,
	title = {Are we ready to track climate-driven shifts in marine species across international boundaries? - A global survey of scientific bottom trawl data},
	journal = {Global Change Biology},
	volume = {27},
	year = {2021},
	month = {Jan-01-2021},
	pages = {220 - 236},
	issn = {1354-1013},
	doi = {10.1111/gcb.v27.210.1111/gcb.15404},
	url = {https://onlinelibrary.wiley.com/toc/13652486/27/2},
	author = {Maureaud, Aurore and Frelat, Romain and P{\'e}cuchet, Laur{\`e}ne and Shackell, Nancy and M{\'e}rigot, Bastien and Pinsky, Malin L. and Amador, Kofi and Anderson, Sean C. and Arkhipkin, Alexander and Auber, Arnaud and Barri, I{\c c}a and Bell, Richard J. and Belmaker, Jonathan and Beukhof, Esther and Camara, Mohamed L. and Guevara-Carrasco, Renato and Choi, Junghwa and Christensen, Helle T. and Conner, Jason and Cubillos, Luis A. and Diadhiou, Hamet D. and Edelist, Dori and Emblemsv{\r a}g, Margrete and Ernst, Billy and Fairweather, Tracey P. and Fock, Heino O. and Friedland, Kevin D. and Garcia, Camilo B. and Gascuel, Didier and Gislason, Henrik and Goren, Menachem and Guitton, J{\'e}r{\^o}me and Jouffre, Didier and Hattab, Tarek and Hidalgo, Manuel and Kathena, Johannes N. and Knuckey, Ian and Kid{\'e}, Sa{\"\i}kou O. and Koen-Alonso, Mariano and Koopman, Matt and Kulik, Vladimir and Le{\'o}n, Jacqueline Palacios and Levitt-Barmats, Ya{\textquoteright}arit and Lindegren, Martin and Llope, Marcos and Massiot-Granier, F{\'e}lix and Masski, Hicham and McLean, Matthew and Meissa, Beyah and M{\'e}rillet, Laur{\`e}ne and Mihneva, Vesselina and Nunoo, Francis K. E. and O{\textquoteright}Driscoll, Richard and O{\textquoteright}Leary, Cecilia A. and Petrova, Elitsa and Ramos, Jorge E. and Refes, Wahid and Rom{\'a}n-Marcote, Esther and Siegstad, Helle and Sobrino, Ignacio and S{\'o}lmundsson, J{\'o}n and Sonin, Oren and Spies, Ingrid and Steingrund, Petur and Stephenson, Fabrice and Stern, Nir and Tserkova, Feriha and Tserpes, Georges and Tzanatos, Evangelos and Rijn, Itai and Zwieten, Paul A. M. and Vasilakopoulos, Paraskevas and Yepsen, Daniela V. and Ziegler, Philippe and Thorson, James}
}
@article {8654,
	title = {Biological invasions in France: Alarming costs and even more alarming knowledge gaps},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {191 - 224},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.59134},
	url = {https://neobiota.pensoft.net/article/59134/},
	author = {Renault, David and Manfrini, El{\'e}na and Leroy, Boris and Diagne, Christophe and Ballesteros-Mejia, Liliana and Angulo, Elena and Courchamp, Franck}
}
@article {8408,
	title = {A CO2 sink in a tropical coastal lagoon impacted by cultural eutrophication and upwelling},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {263},
	year = {2021},
	month = {Jan-12-2021},
	pages = {107633},
	issn = {02727714},
	doi = {10.1016/j.ecss.2021.107633},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771421004820},
	author = {Erbas, Tha{\'\i}s and Marques, Aguinaldo and Gwena{\"e}l Abril}
}
@article {8143,
	title = {Cumulative effects of marine renewable energy and climate change on ecosystem properties: Sensitivity of ecological network analysis},
	journal = {Ecological Indicators},
	volume = {121},
	year = {2021},
	month = {Jan-02-2021},
	pages = {107128},
	issn = {1470160X},
	doi = {10.1016/j.ecolind.2020.107128},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1470160X20310670},
	author = {Nogues, Quentin and Raoux, Aurore and Araignous, Emma and Chaalali, Aur{\'e}lie and Hattab, Tarek and Leroy, Boris and Ben Rais Lasram, Frida and David, Val{\'e}rie and Le Loc{\textquoteright}h, Francois and Dauvin, Jean-Claude and Nathalie Niquil}
}
@article {8051,
	title = {Data Curation, Fisheries and Ecosystem-based Management : The Case Study of the Pecheker Database},
	journal = {International Journal of Digital Curation},
	volume = {16},
	year = {2021},
	pages = {31},
	abstract = {The scientific monitoring of the Southern Ocean French fishing industry is based on the use the Pecheker database. Pecheker is dedicated to the digital curation of the data collected on field by scientific observers and which analysis allows the scientists of the Mus{\'e}um national d{\textquoteright}Histoire naturelle institution to provide guidelines and advice for the regulation of the fishing activity, the protection of the fish stocks and the protection of the marine ecosystems. The template of Pecheker has been developed to make the database adapted to the ecosystem-based management concept. Considering the global context of biodiversity erosion, this modern approach of management aims to take account of the environmental background of the fisheries to ensure their sustainable development. Completeness and high quality of the raw data is a key element for an ecosystem-based management database such as Pecheker. Here, we present the development of this database as a case study of fisheries data curation to be shared with the readers. Full code to deploy a database based on the Pecheker template is provided in supplementary materials. Considering the success factors we could identify, we propose a discussion about how the community could build a global fisheries information system based on a network of small databases including interoperability standards.},
	issn = {1746-8256},
	doi = {10.2218/ijdc.v16i1.674},
	url = {http://www.ijdc.net/article/view/674},
	author = {Martin Alexis and Charlotte Chazeau and Nicolas Gasco and Guy Duhamel and Patrice Pruvost}
}
@article {8886,
	title = {Detailed assessment of the reported economic costs of invasive species in Australia},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {511 - 550},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.5883410.3897/neobiota.67.58834.suppl1},
	url = {https://neobiota.pensoft.net/article/58834/},
	author = {Bradshaw, Corey J. A. and Hoskins, Andrew J. and Haubrock, Phillip J. and Cuthbert, Ross N. and Diagne, Christophe and Leroy, Boris and Andrews, Lindell and Page, Brad and Cassey, Phill and Sheppard, Andy W. and Courchamp, Franck}
}
@article {7700,
	title = {Dietary taurine improves vision in different age gilthead sea bream (Sparus aurata) larvae potentially contributing to increased prey hunting success and growth},
	journal = {Aquaculture},
	volume = {533},
	year = {2021},
	month = {Jan-02-2021},
	pages = {736129},
	issn = {00448486},
	doi = {10.1016/j.aquaculture.2020.736129},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0044848620338357},
	author = {Gaon, A. and Nixon, O. and Tandler, A. and Falcon, J. and Besseau, L. and Escande, M. and El Sadin, S. and Allon, G. and Koven, W.}
}
@article {8161,
	title = {Disentangling tropicalization and deborealization in marine ecosystems under climate change},
	journal = {Current Biology},
	year = {2021},
	abstract = {Summary As climate change accelerates, species are shifting poleward and subtropical and tropical species are colonizing temperate environments.1, 2, 3 A popular approach for characterizing such responses is the community temperature index (CTI), which tracks the mean thermal affinity of a community. Studies in marine,4 freshwater,5 and terrestrial6 ecosystems have documented increasing CTI under global warming. However, most studies have only linked increasing CTI to increases in warm-affinity species. Here, using long-term monitoring of marine fishes across the Northern Hemisphere, we decomposed CTI changes into four underlying processes{\textemdash}tropicalization (increasing warm-affinity), deborealization (decreasing cold-affinity), borealization (increasing cold-affinity), and detropicalization (decreasing warm-affinity){\textemdash}for which we examined spatial variability and drivers. CTI closely tracked changes in sea surface temperature, increasing in 72\% of locations. However, 31\% of these increases were primarily due to decreases in cold-affinity species, i.e., deborealization. Thus, increases in warm-affinity species were prevalent, but not ubiquitous. Tropicalization was stronger in areas that were initially warmer, experienced greater warming, or were deeper, while deborealization was stronger in areas that were closer to human population centers or that had higher community thermal diversity. When CTI (and temperature) increased, species that decreased were more likely to be living closer to their upper thermal limits or to be commercially fished. Additionally, warm-affinity species that increased had smaller body sizes than those that decreased. Our results show that CTI changes arise from a variety of underlying community responses that are linked to environmental conditions, human impacts, community structure, and species characteristics.},
	keywords = {bottom trawl, community temperature index, Fisheries, marine ecology, thermal affinity},
	issn = {0960-9822},
	doi = {https://doi.org/10.1016/j.cub.2021.08.034},
	url = {https://www.sciencedirect.com/science/article/pii/S0960982221011386},
	author = {Matthew McLean and David Mouillot and Aurore A. Maureaud and Tarek Hattab and M. Aaron MacNeil and Goberville, Eric and Martin Lindegren and Georg Engelhard and Malin Pinsky and Arnaud Auber}
}
@article {9116,
	title = {Do Hydrothermal Shrimp Smell Vents? },
	journal = {Insects},
	volume = {12(11)},
	year = {2021},
	pages = {1043},
	abstract = {Deep-sea species endemic to hydrothermal vents face the critical challenge of detecting active sites in a vast environment devoid of sunlight. This certainly requires specific sensory abilities, among which olfaction could be a relevant sensory modality, since chemical compounds in hydrothermal fluids or food odors could potentially serve as orientation cues. The temperature of the vent fluid might also be used for locating vent sites. The objective of this study is to observe the following key behaviors of olfaction in hydrothermal shrimp, which could provide an insight into their olfactory capacities: (1) grooming behavior; (2) attraction to environmental cues (food odors and fluid markers). We designed experiments at both deep-sea and atmospheric pressure to assess the behavior of the vent shrimp Rimicaris exoculata and Mirocaris fortunata, as well as of the coastal species Palaemon elegans and Palaemon serratus for comparison. Here, we show that hydrothermal shrimp groom their sensory appendages similarly to other crustaceans, but this does not clean the dense bacterial biofilm that covers the olfactory structures. These shrimp have previously been shown to possess functional sensory structures, and to detect the environmental olfactory signals tested, but we do not observe significant attraction behavior here. Only temperature, as a signature of vent fluids, clearly attracts vent shrimp and thus is confirmed to be a relevant signal for orientation in their environment.},
	keywords = {antennules; behavior; chemosensory perception; grooming; hydrothermal shrimp; olfaction; thermal detection},
	doi = {doi: 10.3390/insects12111043},
	author = {Ravaux, Juliette and Machon, Julia and Shillito, Bruce and Barth{\'e}l{\'e}my, Dominique and Amand, Louis and Cabral, M{\'e}lanie and Delcour, Elise and Zbinden, Magali}
}
@article {9115,
	title = {Do Hydrothermal Shrimp Smell Vents?},
	journal = {Insects},
	volume = {12},
	year = {2021},
	month = {2021 Nov 20},
	abstract = {<p>Deep-sea species endemic to hydrothermal vents face the critical challenge of detecting active sites in a vast environment devoid of sunlight. This certainly requires specific sensory abilities, among which olfaction could be a relevant sensory modality, since chemical compounds in hydrothermal fluids or food odors could potentially serve as orientation cues. The temperature of the vent fluid might also be used for locating vent sites. The objective of this study is to observe the following key behaviors of olfaction in hydrothermal shrimp, which could provide an insight into their olfactory capacities: (1) grooming behavior; (2) attraction to environmental cues (food odors and fluid markers). We designed experiments at both deep-sea and atmospheric pressure to assess the behavior of the vent shrimp and , as well as of the coastal species and for comparison. Here, we show that hydrothermal shrimp groom their sensory appendages similarly to other crustaceans, but this does not clean the dense bacterial biofilm that covers the olfactory structures. These shrimp have previously been shown to possess functional sensory structures, and to detect the environmental olfactory signals tested, but we do not observe significant attraction behavior here. Only temperature, as a signature of vent fluids, clearly attracts vent shrimp and thus is confirmed to be a relevant signal for orientation in their environment.</p>
},
	issn = {2075-4450},
	doi = {10.3390/insects12111043},
	author = {Ravaux, Juliette and Machon, Julia and Shillito, Bruce and Barth{\'e}l{\'e}my, Dominique and Amand, Louis and Cabral, M{\'e}lanie and Delcour, Elise and Zbinden, Magali}
}
@article {9057,
	title = {Do Hydrothermal Shrimp Smell Vents?},
	journal = {Insects},
	volume = {12},
	year = {2021},
	month = {Jan-11-2021},
	pages = {1043},
	doi = {10.3390/insects12111043},
	url = {https://www.mdpi.com/2075-4450/12/11/1043},
	author = {Juliette Ravaux and Machon, Julia and Shillito, Bruce and Barth{\'e}l{\'e}my, Dominique and Amand, Louis and Cabral, M{\'e}lanie and Delcour, Elise and Zbinden, Magali}
}
@article {8655,
	title = {The economic costs of biological invasions in Africa: a growing but neglected threat?},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {11 - 51},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.59132},
	url = {https://neobiota.pensoft.net/article/59132/},
	author = {Diagne, Christophe and Turbelin, Anna J. and Moodley, Desika and Novoa, Ana and Leroy, Boris and Angulo, Elena and Adamjy, Tasnime and Dia, Cheikh A.K.M. and Taheri, Ahmed and Tambo, Justice and Dobigny, Gauthier and Courchamp, Franck}
}
@article {8656,
	title = {Economic costs of biological invasions within North America},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {07/2021},
	pages = {485-510},
	author = {Crystal-Ornelas, Rob and Hudgins, Emma J and Cuthbert, Ross N. and Haubrock, Phillip J. and Fantle-Lepczyk, J and Angulo, Elena and Kramer, Andrew M. and Ballesteros-Mejia, Liliana and Leroy, Boris and Leung, Brian and L{\'o}pez-L{\'o}pez, E and Diagne, Christophe and Courchamp, Franck}
}
@article {8144,
	title = {Economic costs of invasive alien species across Europe},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {153 - 190},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.58196},
	url = {https://neobiota.pensoft.net/article/58196/},
	author = {Haubrock, Phillip J. and Turbelin, Anna J. and Cuthbert, Ross N. and Novoa, Ana and Taylor, Nigel G. and Angulo, Elena and Ballesteros-Mejia, Liliana and Bodey, Thomas W. and Capinha, C{\'e}sar and Diagne, Christophe and Essl, Franz and Golivets, Marina and Kirichenko, Natalia and Kourantidou, Melina and Leroy, Boris and Renault, David and Verbrugge, Laura and Courchamp, Franck}
}
@article {8653,
	title = {Economic costs of invasive alien species in the Mediterranean basin},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {427 - 458},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.5892610.3897/neobiota.67.58926.suppl110.3897/neobiota.67.58926.suppl2},
	url = {https://neobiota.pensoft.net/article/58926/},
	author = {Kourantidou, Melina and Cuthbert, Ross N. and Haubrock, Phillip J. and Novoa, Ana and Taylor, Nigel G. and Leroy, Boris and Capinha, C{\'e}sar and Renault, David and Angulo, Elena and Diagne, Christophe and Courchamp, Franck}
}
@article {8547,
	title = {Epizoic diatoms on sea turtles and their relationship to host species, behaviour and biogeography: a morphological approach},
	journal = {European Journal of Phycology},
	volume = {56},
	year = {2021},
	month = {Feb-10-2021},
	pages = {359 - 372},
	issn = {0967-0262},
	doi = {10.1080/09670262.2020.1843077},
	url = {https://www.tandfonline.com/doi/full/10.1080/09670262.2020.1843077},
	author = {Riaux-Gobin, Catherine and Ashworth, Matt P. and Kociolek, J.Patrick and Chevallier, Damien and Saenz-Agudelo, Pablo and Witkowski, Andrzej and Daniszewska-Kowalczyk, Genowefa and Gaspar, Cecile and Lagant, Magali and Touron, Margaux and Carpentier, Alice and Stabile, Vie and Planes, Serge}
}
@proceedings {8068,
	title = {Establishing water sample protocols for radiocarbon analysis  at LAC-UFF, Brazil},
	year = {2021},
	month = {09/2021},
	pages = {1-8},
	abstract = {Since the establishment of the first radiocarbon accelerator mass spectrometry facility in Latin America in 2009, the Radiocarbon Laboratory team of Universidade Federal Fluminense (LAC-UFF) has worked to improve sample preparation protocols and increase the range of environmental matrices to be analyzed. We now present the preliminary results for DIC sample preparation protocols. The first validation tests include background evaluation with pMC value (0.35 {\textpm} 0.04) using bicarbonate dissolved in water. We also analyzed surface seawater resulting in pMC value (101.38 {\textpm} 0.38) and a groundwater previously dated from LEMA AMS-Laboratory with pMC value (12.30 {\textpm} 0.15).},
	issn = {0033-8222},
	doi = {10.1017/RDC.2021.1},
	url = {https://www.cambridge.org/core/product/identifier/S0033822221000011/type/journal_article},
	author = {Bragan{\c c}a, Daniela and Oliveira, Fabiana and Macario, Kita and Nunes, Vinicius and Muniz, Marcelo and Lamego, Fernando and Gwena{\"e}l Abril and Nepomuceno, Aguinaldo and Sol{\'\i}s, Corina and Rodr{\'\i}guez-Ceja, Mar{\'\i}a}
}
@article {8106,
	title = {Eutrophication overcoming carbonate precipitation in a tropical hypersaline coastal lagoon acting as a CO2 sink (Araruama Lagoon, SE Brazil)},
	journal = {Biogeochemistry},
	year = {2021},
	month = {Jun-08-2022},
	issn = {0168-2563},
	doi = {10.1007/s10533-021-00842-3},
	url = {https://link.springer.com/10.1007/s10533-021-00842-3},
	author = {Cotovicz, Luiz C. and Knoppers, Bastiaan A. and R{\'e}gis, Carolina R. and Tremmel, Daniel and Costa-Santos, Suzan and Gwena{\"e}l Abril}
}
@article {8728,
	title = {Exploration of chemosensory ionotropic receptors in cephalopods: the IR25 gene is expressed in the olfactory organs, suckers, and fins of Sepia officinalis.},
	journal = {Chem Senses},
	volume = {46},
	year = {2021},
	month = {2021 01 01},
	abstract = {<p>While they are mostly renowned for their visual capacities, cephalopods are also good at olfaction for prey, predator, and conspecific detection. The olfactory organs and olfactory cells are well described but olfactory receptors-genes and proteins-are still undescribed in cephalopods. We conducted a broad phylogenetic analysis of the ionotropic glutamate receptor family in mollusks (iGluR), especially to identify IR members (Ionotropic Receptors), a variant subfamily whose involvement in chemosensory functions has been shown in most studied protostomes. A total of 312 iGluRs sequences (including 111 IRs) from gastropods, bivalves, and cephalopods were identified and annotated. One orthologue of the gene coding for the chemosensory IR25 co-receptor has been found in Sepia officinalis (Soff-IR25). We searched for Soff-IR25 expression at the cellular level by in situ hybridization in whole embryos at late stages before hatching. Expression was observed in the olfactory organs, which strongly validates the chemosensory function of this receptor in cephalopods. Soff-IR25 was also detected in the developing suckers, which suggests that the unique {\guillemotleft} taste by touch {\guillemotright} behavior that cephalopods execute with their arms and suckers share features with olfaction. Finally, Soff-IR25 positive cells were unexpectedly found in fins, the two posterior appendages of cephalopods, mostly involved in locomotory functions. This result opens new avenues of investigation to confirm fins as additional chemosensory organs in cephalopods.</p>
},
	keywords = {Animals, Cephalopoda, Phylogeny, Receptors, Ionotropic Glutamate, Receptors, Odorant, Sepia, Smell},
	issn = {1464-3553},
	doi = {10.1093/chemse/bjab047},
	author = {Aude Andouche and Valera, St{\'e}phane and S{\'e}bastien Baratte}
}
@article {8392,
	title = {Global systematic diversity, range distributions, conservation and taxonomic assessments of graylings (Teleostei: Salmonidae; Thymallus spp.)Abstract},
	journal = {Organisms Diversity \& Evolution},
	volume = {21},
	year = {2021},
	month = {Jan-03-2021},
	pages = {25 - 42},
	issn = {1439-6092},
	doi = {10.1007/s13127-020-00468-7},
	url = {http://link.springer.com/10.1007/s13127-020-00468-7},
	author = {Weiss, Steven J. and Gon{\c c}alves, Duarte V. and Secci-Petretto, Giulia and Englmaier, Gernot K. and Gomes-Dos-Santos, Andr{\'e} and Denys, Ga{\"e}l and Persat, Henri and Antonov, Alexander and Hahn, Christoph and Taylor, Eric B. and Froufe, Elsa}
}
@article {8067,
	title = {Greenhouse gas emissions (CO2 and CH4) and inorganic carbon behavior in an urban highly polluted tropical coastal lagoon (SE, Brazil)},
	journal = {Environmental Science and Pollution Research},
	year = {2021},
	month = {04/2021},
	issn = {0944-1344},
	doi = {10.1007/s11356-021-13362-2},
	url = {http://link.springer.com/10.1007/s11356-021-13362-2},
	author = {Cotovicz, Luiz C. and Ribeiro, Renato P. and R{\'e}gis, Carolina Ramos and Bernardes, Marcelo and Sobrinho, Rodrigo and Vidal, Luciana Oliveira and Tremmel, Daniel and Knoppers, Bastiaan A. and Gwena{\"e}l Abril}
}
@article {7987,
	title = {Identification of benthic egg masses and spawning grounds in commercial squid in the English Channel and Celtic Sea: Loligo vulgaris vs L. forbesii},
	journal = {Fisheries Research},
	volume = {241},
	year = {2021},
	month = {Jan-09-2021},
	pages = {106004},
	issn = {01657836},
	doi = {10.1016/j.fishres.2021.106004},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0165783621001326},
	author = {Laptikhovsky, Vladimir and Cooke, Gavan and Barrett, Christopher and Lozach, Sophie and MacLeod, Eleanor and Oesterwind, Daniel and Sheerin, Edel and Petroni, Michael and Barnwall, Leigh and Jean-Paul Robin and Allcock, Louise and Power, Anne Marie}
}
@article {8147,
	title = {Impacts of climate change on the Bay of Seine ecosystem: Forcing a spatio-temporal trophic model with predictions from an ecological niche model},
	journal = {Fisheries Oceanography},
	volume = {30},
	year = {2021},
	month = {Jan-09-2021},
	pages = {471 - 489},
	issn = {1054-6006},
	doi = {10.1111/fog.v30.510.1111/fog.12531},
	url = {https://onlinelibrary.wiley.com/toc/13652419/30/5},
	author = {Bourdaud, Pierre and Ben Rais Lasram, Frida and Araignous, Emma and Champagnat, Juliette and Grusd, Samantha and Halouani, Ghassen and Hattab, Tarek and Leroy, Boris and Nogues, Quentin and Raoux, Aurore and Safi, Georges and Nathalie Niquil}
}
@article {8741,
	title = {Kakila database: Towards a FAIR community approved database of cetacean presence in the waters of the Guadeloupe archipelago based on citizen science},
	journal = {Biodiversity Data Journal},
	volume = {9},
	year = {2021},
	month = {Oct-07-2022},
	issn = {1314-2836},
	doi = {10.3897/BDJ.9.e69022},
	url = {https://bdj.pensoft.net/article/69022/},
	author = {Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne and Le Bras, Yvan and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne and Le Bras, Yvan and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne and Le Bras, Yvan and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne and Le Bras, Yvan and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne}
}
@article {8754,
	title = {La protection des milieux aquatiques. Vuln{\'e}rabilit{\'e} et sensibilit{\'e} fonctionnelle des communaut{\'e}s de poissons},
	journal = {Sciences Eaux \& Territoires},
	volume = {N{\textdegree} 37},
	year = {2021},
	month = {Jan-12-2022},
	pages = {76 - 81},
	abstract = {Les approches en {\'e}cologie fonctionnelle ouvrent aujourd{\textquoteright}hui de nouvelles perspectives dans le domaine du diagnostic {\'e}cologique. C{\textquoteright}est le cas par exemple du crit{\`e}re de la redondance fonctionnelle que les auteurs de cet article ont appliqu{\'e} aux communaut{\'e}s de poissons pour {\'e}valuer leur sensibilit{\'e} fonctionnelle {\`a} la perte d{\textquoteright}esp{\`e}ces, et au-del{\`a}, mesurer l{\textquoteright}influence d{\textquoteright}un d{\'e}clin potentiel de diversit{\'e} sur le fonctionnement de l{\textquoteright}{\'e}cosyst{\`e}me. L{\textquoteright}int{\'e}gration de ce type d{\textquoteright}indice, en compl{\'e}ment des crit{\`e}res habituels, est utile pour d{\'e}finir des plans de gestion ou des sites prioritaires {\`a} prot{\'e}ger face {\`a} des perturbations environnementales, en se concentrant sur les processus {\'e}cosyst{\'e}miques.},
	issn = {2109-3016},
	doi = {10.3917/set.037.0076},
	url = {https://www.cairn.info/revue-sciences-eaux-et-territoires-2021-3-page-76.htm?ref=doi},
	author = {Teichert, Nils and Lepage, Mario and Hette-Tronquart, Nicolas and Argillier, Christine}
}
@article {8094,
	title = {Long term relationship between farming damselfish, predators, competitors and benthic habitat on coral reefs of Moorea Island},
	journal = {Scientific Reports},
	volume = {11},
	year = {2021},
	month = {07/2021},
	pages = {14548},
	doi = {10.1038/s41598-021-94010-0},
	url = {http://www.nature.com/articles/s41598-021-94010-0},
	author = {Feeney, William E. and Fr{\'e}d{\'e}ric Bertucci and Gairin, Emma and Siu, Gilles and Waqalevu, Viliame and Antoine, Morgan and Lison de Loma, Thierry and Planes, Serge and Galzin, Ren{\'e} and Lecchini, David}
}
@article {9257,
	title = {Morphostructural data and phylogenetic relationships of a new cnidarian myxosporean infecting spleen of an economic and ecological important bryconid fish from Brazil},
	journal = {Microbial Pathogenesis},
	volume = {150},
	year = {2021},
	month = {Jan-01-2021},
	pages = {104718},
	issn = {08824010},
	doi = {10.1016/j.micpath.2020.104718},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0882401020310846},
	author = {Milanin, Tiago and Mathews, Patrick D. and Morandini, Andr{\'e} C. and Mertins, Omar and Audebert, Fabienne and Pereira, Jose O.L. and Maia, Antonio A.M.}
}
@article {7724,
	title = {New taxonomic and phylogeographic data on three nominal species of the genus Septaria F{\'e}russac, 1807 (Gastropoda: Cycloneritida: Neritidae)},
	journal = {Zootaxa},
	volume = {4915},
	year = {2021},
	month = {Jan-20-2021},
	pages = {28 - 40},
	abstract = {Due to superficial morphological similarities, there is often confusion in the identification of some species of the genus <em>Septaria</em>. A combined analysis of the genital anatomy, morphometric and DNA, based on a portion of the COI gene, applied to three nominal species of this genus, confirmed the validity of <em>Septaria tahitian</em>a Eichhorst, 2016, and suggested that <em>Septaria borbonica</em> (Bory de Saint Vincent, 1804) is a subspecies of <em>Septaria porcellana</em> (Linnaeus, 1758), both taxa with disjunct distribution areas: <em>Septaria borbonica</em> in the western Indian Ocean and<em> Septaria porcellana</em> the western Pacific and eastern Indian Oceans. The possible presence of <em>Septaria tesselata</em> (Lamarck, 1816) in Mayotte (Comoros Archipelago) needs to be confirmed.},
	keywords = {Indo-Pacific, mitochondrial DNA, mollusc, Phylogeny, shell morphometrics, taxonomy},
	issn = {1175-5326},
	doi = {10.11646/zootaxa.4915.110.11646/zootaxa.4915.1.2},
	url = {https://www.biotaxa.org/Zootaxa/issue/view/zootaxa.4915.1},
	author = {Ahmed Abdou}
}
@article {8002,
	title = {North Atlantic warming over six decades drives decreases in krill abundance with no associated range shiftAbstract},
	journal = {Communications Biology},
	volume = {4},
	year = {2021},
	month = {Jan-12-2021},
	abstract = {In the North Atlantic, euphausiids (krill) form a major link between primary production and predators including commercially exploited fish. This basin is warming very rapidly, with species expected to shift northwards following their thermal tolerances. Here we show, however, that there has been a 50\% decline in surface krill abundance over the last 60 years that occurred in situ, with no associated range shift. While we relate these changes to the warming climate, our study is the first to document an in situ squeeze on living space within this system. The warmer isotherms are shifting measurably northwards but cooler isotherms have remained relatively static, stalled by the subpolar fronts in the NW Atlantic. Consequently the two temperatures defining the core of krill distribution (7{\textendash}13 {\textdegree}C) were 8{\textdegree} of latitude apart 60 years ago but are presently only 4{\textdegree} apart. Over the 60 year period the core latitudinal distribution of euphausiids has remained relatively stable so a {\textquoteleft}habitat squeeze{\textquoteright}, with loss of 4{\textdegree} of latitude in living space, could explain the decline in krill. This highlights that, as the temperature warms, not all species can track isotherms and shift northward at the same rate with both losers and winners emerging under the {\textquoteleft}Atlantification{\textquoteright} of the sub-Arctic.},
	doi = {10.1038/s42003-021-02159-1},
	url = {http://www.nature.com/articles/s42003-021-02159-1},
	author = {Martin Edwards and Pierre H{\'e}laou{\"e}t and Goberville, Eric and Lindley, Alistair and Tarling, Geraint A. and Burrows, Michael T. and Angus Atkinson}
}
@article {8059,
	title = {Pelagic habitats under the MSFD D1: scientific advice of policy relevance : recommendations to frame problems and solutions for the pelagic habitats{\textquoteright} assessment.},
	year = {2021},
	institution = {Publications Office of the European Union},
	abstract = {Pelagic habitats are a policy priority below Descriptor 1 (Biodiversity) of the Marine Strategy Framework Directive (MSFD). They are addressed under the D1C6 criterion, stating {\textquotedblleft}the condition of the habitat type, including its biotic and abiotic structure and its functions{\textellipsis}, is not adversely affected due to anthropogenic pressures{\textquotedblright}. The evaluation of pelagic habitats status is challenged by the functional and structural characteristics of pelagic habitat diversity and processes. To date, pelagic habitats assessments are lacking in common criteria and methodologies that characterize the habitat while accounting for the effects of anthropogenic pressures to achieve the Good Environmental Status (GES). It is therefore necessary to prioritise communication between scientific and policy communities and frame pelagic research to agree on common methods and approaches at regional or EU scale. This is key for achieving harmonised and comparable pelagic assessments for the MSFD. This report summarizes the outcomes on the assessment workflow of pelagic habitats of the JRC {\textquotedblleft}MSFD pelagic habitats{\textquotedblright} workshop (9th and 10th March 2021), and the need for coordinated evaluations of the scientific challenges of policy relevance. Recommendations on the MSFD implementation of D1C6, that were generated from the experts during the workshop, will be communicated to the MSFD policy groups and the EU Member States competent authorities to support future harmonised assessment of pelagic habitats.},
	doi = {10.2760/081368},
	url = {https://data.europa.eu/doi/10.2760/081368},
	author = {Magliozzi, Chiara and Druon, Jean-Noel and Palialexis, Andreas and Aguzzi, Laura and Alexande, Brittany and Antoniadis, Konstantinos and Artigas, Luis Felipe and Azzellino, Arianna and Bisinicu, Elena and Boicenco, Laura and Bojanic, Natalia and Borrello, Patrizia and Boschetti, Simona and Carmo, Vanda and Cervantes, Pablo and Coll, Marta and Curmi, Marta and Del Amo, Yolanda and Dutz, Joerg and Franc{\'e}, Janja and Garces, Esther and Gea, Guillermo and Giannakourou, Antonia and Goberville, Eric and Goffart, Anne and Gomes Pereira, Jose Nuno and Gonzalez-Quiros, Rafael and Gorokhova, Elena and Guglielmo, Letterio and Pierre H{\'e}laou{\"e}t and Henriques, Filipe and Heyden, Birgit and Jaanus, Andres and Jakobsen, Hans and Johansen, Marie and Jurgensone, Iveta and Korpinen, Samuli and Kremp, Anke and Kuosa, Harri and Labayle, Lucille and Lazar, Luminita and Abigail McQuatters-Gollop and Nincevic, Zivana and Pagou, Popi and Penna, Antonella and Pettersson, Karin and Ruiter, Hans and Skejic, Sanda and Spada, Emanuela and Spinu, Alina and Tew-Kai, Emilie and Totti, Cecilia and Tunesi, Leonardo and Vadrucci, Maria Rosaria and Valavanis, Vasilis and Varkitzi, Ioanna and Vasiliades, Lavrendios and Veldeki, Georgia and Vidjak, Olja and Vincent, Doroth{\'e}e and Zervoudaki, Soultana}
}
@article {8128,
	title = {Phylogenetic analysis and characterization of a new parasitic cnidarian (Myxosporea: Myxobolidae) parasitizing skin of the giant mottled eel from the Solomon Islands},
	journal = {Infection, Genetics and Evolution},
	volume = {94},
	year = {2021},
	month = {Jan-10-2021},
	pages = {104986},
	issn = {15671348},
	doi = {10.1016/j.meegid.2021.104986},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1567134821002835},
	author = {Mathews, Patrick D. and Bonillo, C{\'e}line and Rabet, Nicolas and Clara Lord and Causse, Romain and Philippe Keith and Audebert, Fabienne}
}
@article {8430,
	title = {Pituitary Hormones mRNA Abundance in the Mediterranean Sea Bass Dicentrarchus labrax: Seasonal Rhythms, Effects of Melatonin and Water Salinity},
	journal = {Frontiers in Physiology},
	volume = {12},
	year = {2021},
	month = {12/15/2021},
	pages = {774975},
	type = {Research article},
	abstract = {In fish, most hormonal productions of the pituitary gland display daily and/or seasonal<br>
rhythmic patterns under control by upstream regulators, including internal biological<br>
clocks. The pineal hormone melatonin, one main output of the clocks, acts at different<br>
levels of the neuroendocrine axis. Melatonin rhythmic production is synchronized mainly<br>
by photoperiod and temperature. Here we aimed at better understanding the role<br>
melatonin plays in regulating the pituitary hormonal productions in a species of scientific<br>
and economical interest, the euryhaline European sea bass Dicentrarchus labrax. We<br>
investigated the seasonal variations in mRNA abundance of pituitary hormones in two<br>
groups of fish raised one in sea water (SW fish), and one in brackish water (BW fish). The<br>
mRNA abundance of three melatonin receptors was also studied in the SW fish. Finally,<br>
we investigated the in vitro effects of melatonin or analogs on the mRNA abundance of<br>
pituitary hormones at two times of the year and after adaptation to different salinities.<br>
We found that (1) the reproductive hormones displayed similar mRNA seasonal profiles<br>
regardless of the fish origin, while (2) the other hormones exhibited different patterns<br>
in the SW vs. the BW fish. (3) The melatonin receptors mRNA abundance displayed<br>
seasonal variations in the SW fish. (4) Melatonin affected mRNA abundance of most<br>
of the pituitary hormones in vitro; (5) the responses to melatonin depended on its<br>
concentration, the month investigated and the salinity at which the fish were previously<br>
adapted. Our results suggest that the productions of the pituitary are a response to<br>
multiple factors from internal and external origin including melatonin. The variety of the<br>
responses described might reflect a high plasticity of the pituitary in a fish that faces<br>
multiple external conditions along its life characterized by marked daily and seasonal<br>
changes in photoperiod, temperature and salinity.},
	keywords = {annual variations, hormones, melatonin, photoperiod, pituitary, salinity, sea bass},
	doi = {10.3389/fphys.2021.774975},
	url = {https://www.frontiersin.org/articles/10.3389/fphys.2021.774975/full?\&utm_source=Email_to_authors_\&utm_medium=Email\&utm_content=T1_11.5e1_author\&utm_campaign=Email_publication\&field=\&journalName=Frontiers_in_Physiology\&id=774975},
	author = {Jack Falcon},
	editor = {Maria-Jesus Herrero and Laura-Gabriela Nisembaum}
}
@article {8420,
	title = {Quantifying Cyanothece growth under DIC limitation},
	journal = {Computational and Structural Biotechnology Journal},
	year = {2021},
	month = {Jan-11-2021},
	issn = {20010370},
	doi = {10.1016/j.csbj.2021.11.036},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2001037021005018},
	author = {Inomura, Keisuke and Masuda, Takako and Eichner, Meri and Rabouille, Sophie and Zav{\v r}el, Tomas and {\v C}erven{\'y}, Jan and Vancov{\'a}, Marie and Bern{\'a}t, Gabor and Armin, Gabrielle and Pascal Claquin and Kotabov{\'a}, Eva and Stephan, Susanne and Suggett, David J. and Deutsch, Curtis and Pr{\'a}{\v s}il, Ondrej}
}
@article {9176,
	title = {Short communication: Amphidromous goby postlarvae (penja) migration seasons and fisheries in West Sulawesi, Indonesia},
	journal = {Biodiversitas Journal of Biological Diversity},
	volume = {23},
	year = {2021},
	month = {Jan-12-2022},
	issn = {1412-033X},
	doi = {10.13057/biodiv/d230138},
	url = {https://smujo.id/biodiv/article/view/9789},
	author = {Nurjirana, Nurjirana and Burhanuddin, Andi I and Philippe Keith and Haris, Abdul and Afrisal, Muhammad}
}
@article {8066,
	title = {Thermodynamic uptake of atmospheric CO2 in the oligotrophic and semiarid S{\~a}o Francisco estuary (NE Brazil)},
	journal = {Marine Chemistry},
	volume = {233},
	year = {2021},
	month = {01/2021},
	pages = {103983},
	issn = {03044203},
	doi = {10.1016/j.marchem.2021.103983},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0304420321000682},
	author = {Gwena{\"e}l Abril and Libardoni, Bruno G. and Brandini, Nilva and Cotovicz, Luiz C. and Medeiros, Paulo R.P. and Cavalcante, Ge{\'o}rgenes H. and Knoppers, Bastiaan A.}
}
@article {7215,
	title = {Trophic niche of the invasive gregarious species Crepidula fornicata, in relation to ontogenic changes},
	journal = {bioRxiv},
	year = {2021},
	pages = {2020.07.30.229021},
	type = {ver. 4 peer-reviewed and recommended by Peer Community In Ecology},
	abstract = {Crepidula fornicata\&nbsp;is a common and widespread invasive gregarious species along the European coast. Among its life-history traits, well documented ontogenic changes in behavior (i.e., motile male to sessile female) suggest a potential shift in feeding strategy across its life stages. Considering the ecological significance of this species in colonized areas, understanding how conspecifics share the trophic resource is crucial. Using fatty acids (FA) and stable isotopes (SI) as complementary trophic markers, we conducted a field survey between late winter and spring to investigate the trophic niche of three ontogenic stages of\&nbsp;C. fornicata\&nbsp;that bear different sexual (male/female) and motility (motile/sessile) traits. Potential trophic sources were characterized by their pigment, FA and SI compositions and showed well discriminated compositions over the studied period. We showed that the biofilm covering\&nbsp;C. fornicata\&nbsp;shells harbored a higher biomass of primary producers (i.e., chlorophytes and diatoms) than the surrounding sediment. Over the studied period, we observed a covariation between the three ontogenic stages for both FA and SI compositions which suggest that the trophic niche of\&nbsp;C. fornicata\&nbsp;does not change significantly across its benthic life. During periods of low food availability, slipper limpets displayed an opportunistic suspension-feeding behaviour, relying on both fresh and detrital organic matter, likely coming from superficial sedimentary organic matter. However, during high food availability (i.e., spring phytoplankton bloom), all ontogenic stages largely benefited from this fresh supply of organic matter (pelagic diatoms in this case). The three ontogenic stages showed consistent differences in FA composition, and to a lesser extent in SI composition. These differences persist over time, as they originate from ontogenic physiological changes (differential growth rates, metabolic rate or gametogenesis) rather than diet discrepancies. This study revealed that multiple trophic markers allow high complementary to characterize organic matter as well as food partitioning between conspecific organisms.<br>
Recommended by PCI Ecology : https://ecology.peercommunityin.org/articles/rec?id=140},
	doi = {10.1101/2020.07.30.229021},
	url = {https://www.biorxiv.org/content/10.1101/2020.07.30.229021v1.abstract},
	author = {Androuin, Thibault and Stanislas Dubois and C{\'e}dric Hubas and Lefebvre, Gwendoline and Le Grand, Fabienne and Gauthier Schaal and Carlier, Antoine}
}
@article {6975,
	title = {Advances in the use of Paris-Edinburgh presses for high pressure neutron scattering},
	journal = {Journal of Neutron Research},
	volume = {21},
	year = {2020},
	month = {May-01-2022},
	pages = {117 - 124},
	issn = {10238166},
	doi = {10.3233/JNR-190120},
	url = {https://content.iospress.com/articles/journal-of-neutron-research/jnr190120},
	author = {Klotz, S and Hansen, Th and Leli{\`e}vre-Berna, E and Amand, Louis and Maurice, J and Payre, C}
}
@article {7202,
	title = {Anthropogenic boat noise reduces feeding success in winter flounder larvae (Pseudopleuronectes americanus)},
	journal = {Environmental Biology of Fishes},
	volume = {103},
	year = {2020},
	month = {Jan-09-2020},
	pages = {1079 - 1090},
	abstract = {The aim of this study was to explore an emerging discipline addressing the impact of anthropogenic noise on larval stages of marine organisms. We assessed the influence of boat noise on the feeding behaviour of the pelagic larvae of winter flounder (Pseudopleuronectes americanus, Walbaum, 1792). The hypothesis was that boat noise influences the feeding behaviour of P. americanus flounder larvae independently of prey\&nbsp; density. Aquaria containing P. americanus larvae were placed in water baths in which boat noise was diffused for the {\textquotedblleft}noise{\textquotedblright} treatment and compared to control aquaria with no sound emissions. Larvae were filmed\&nbsp; using cameras placed above the aquaria and their behaviour was recorded. Larvae exposed to anthropogenic noise displayed significantly fewer hunting events than controls, and their stomach volumes were\&nbsp; significantly smaller. This noise effect was the same at all prey densities used, suggesting that larval feeding behaviour is negatively impaired by anthropogenic noise.},
	keywords = {Feeding behaviour},
	issn = {0378-1909},
	doi = {10.1007/s10641-020-01005-3},
	url = {http://link.springer.com/10.1007/s10641-020-01005-3},
	author = {Gendron, Gilberte and Tremblay, Rejean and Jolivet, Aur{\'e}lie and Fr{\'e}d{\'e}ric Olivier and Chauvaud, Laurent and Winkler, Gesche and Audet, C{\'e}line}
}
@article {6654,
	title = {Assessing the impact of toothed whale depredation on socio-ecosystems and fishery management in wide-ranging subantarctic fisheries},
	journal = {Reviews in Fish Biology and Fisheries},
	volume = {30},
	year = {2020},
	pages = {203-217},
	abstract = {Marine predators feeding on fisheries catches directly on the fishing gear, a behaviour termed {\textquotedblleft}depredation{\textquotedblright}, has emerged as a major human-wildlife conflict globally, often resulting in substantial socio-economic and ecological impacts. This study investigated the extent of this conflict in commercial Patagonian toothfish (Dissostichus eleginoides) fisheries across subantarctic waters where both killer whales (Orcinus orca) and sperm whales (Physeter macrocephalus) feed on toothfish caught on longline hooks. Using long-term datasets from six major fishing areas, from southern Chile to the Indian Ocean sector of the Southern Ocean, statistical models were developed to quantify the catch removals due to whale depredation interactions. The results indicated that these removals were large, totalling more than 6600 t of toothfish between 2009 and 2016 with an annual mean of 837 t [95\% CI 480{\textendash}1195 t], comprised of 317 t [232{\textendash}403 t] and 518 t [247{\textendash}790 t] removed by killer whales and sperm whales, respectively. Catch removals greatly varied between areas, with the largest estimates found at Crozet, where on average 279 t [179{\textendash}379 t] of toothfish per year, equivalent to 30\% [21{\textendash}37\%] of the total catches. Together, these findings provide metrics to assess the impacts of depredation interactions on the fishing industry, whale populations, fish stocks and associated ecosystems. With an estimated $15\&nbsp;M USD worth of fish depredated every year, this study highlights the large geographic scale and economic significance of the depredation issue and its potential to compromise the viability of some toothfish fisheries which are the primary socio-economic activity in subantarctic regions.},
	doi = {10.1007/s11160-020-09597-w},
	url = {https://link.springer.com/article/10.1007/s11160-020-09597-w},
	author = {Tixier, Paul and Burch, Paul and Massiot-Granier, F{\'e}lix and Ziegler, Philippe and Welsford, Dirk and Lea, Mary-Anne and Hindell, Mark A and Guinet, Christophe and Wotherspoon, Simon and Nicolas Gasco and Clara P{\'e}ron and Guy Duhamel and Arangio, Rhys and Tascheri, Renzo and Somhlaba, Sobahle and Arnould, John P. Y.}
}
@article {7773,
	title = {Assessment of the quality of European silver eels and tentative approach to trace the origin of contaminants {\textendash} A European overview},
	journal = {Science of The Total Environment},
	volume = {743},
	year = {2020},
	month = {Jan-11-2020},
	pages = {140675},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2020.140675},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969720341978},
	author = {Bourillon, Bastien and Anthony Acou and Thomas Trancart and Belpaire, Claude and Covaci, Adrian and Bustamante, Paco and Faliex, Elisabeth and Amilhat, Elsa and Malarvannan, Govindan and Virag, Laure and Aarestrup, Kim and Bervoets, Lieven and Boisneau, Catherine and Boulenger, Clarisse and Gargan, Paddy and Becerra-Jurado, Gustavo and Lob{\'o}n-Cervi{\'a}, Javier and Maes, Gregory E. and Pedersen, Michael Ingemann and Poole, Russell and Sj{\"o}berg, Niklas and Wickstr{\"o}m, H{\r a}kan and Walker, Alan and Righton, David and Eric Feunteun}
}
@article {8551,
	title = {Behavioural inference from signal processing using animal-borne multi-sensor loggers: a novel solution to extend the knowledge of sea turtle ecology},
	journal = {Royal Society Open Science},
	volume = {7},
	year = {2020},
	month = {Jan-05-2020},
	pages = {200139},
	doi = {10.1098/rsos.200139},
	url = {https://royalsocietypublishing.org/doi/10.1098/rsos.200139},
	author = {Jeantet, Lor{\`e}ne and Planas-Bielsa, V{\'\i}ctor and Benhamou, Simon and Geiger, S{\'e}bastien and Martin, Jordan and Siegwalt, Flora and Lelong, Pierre and Gresser, Julie and Etienne, Denis and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and R{\'e}gis, Sidney and Lecerf, Nicolas and Frouin, C{\'e}dric and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Maillet, Thomas and Andreani, Lucas and Campistron, Guilhem and Delvaux, H{\'e}l{\`e}ne and Guyon, Christelle and Richard, Sandrine and Lefebvre, Fabien and Aubert, Nathalie and Habold, Caroline and Le Maho, Yvon and Chevallier, Damien}
}
@article {7203,
	title = {Carbon dioxide sources and sinks in the delta of the Para{\'\i}ba do Sul River (Southeastern Brazil) modulated by carbonate thermodynamics, gas exchange and ecosystem metabolism during estuarine mixing},
	journal = {Marine Chemistry},
	volume = {226},
	year = {2020},
	month = {Jan-10-2020},
	pages = {103869},
	issn = {03044203},
	doi = {10.1016/j.marchem.2020.103869},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0304420320301237},
	author = {Cotovicz, Luiz C. and Vidal, Luciana O. and de Rezende, Carlos Eduardo and Bernardes, Marcelo C. and Knoppers, Bastiaan A. and Sobrinho, Rodrigo L. and Cardoso, Renan P. and Muniz, Marcelo and dos Anjos, Roberto Meigikos and Biehler, Antoine and Gwena{\"e}l Abril}
}
@article {6866,
	title = {A current synthesis on the effects of electric and magnetic fields emitted by submarine power cables on invertebrates},
	journal = {Marine Environmental Research},
	volume = {159},
	year = {2020},
	pages = {104958},
	abstract = {The goal of clean renewable energy production has promoted the large-scale deployment of marine renewable energy devices, and their associated submarine cable network. Power cables produce both electric and magnetic fields that raise environmental concerns as many marine organisms have magneto and electroreception abilities used for vital purposes. Magnetic and electric fields{\quotesinglbase}{\"A}{\^o} intensities decrease with distance away from the cable. Accordingly, the benthic and the sedimentary compartments are exposed to the highest field values. Although marine invertebrate species are the major fauna of these potentially exposed areas, they have so far received little attention. We provide extensive background knowledge on natural and anthropogenic marine sources of magnetic and electric fields. We then compile evidence for magneto- and electro-sensitivity in marine invertebrates and further highlight what is currently known about their interactions with artificial sources of magnetic and electric fields. Finally we discuss the main gaps and future challenges that require further investigation.},
	issn = {0141-1136},
	doi = {https://doi.org/10.1016/j.marenvres.2020.104958},
	url = {http://www.sciencedirect.com/science/article/pii/S0141113619307706},
	author = {Luana Albert and Fran{\c c}ois Deschamps and Aur{\'e}lie Jolivet and Fr{\'e}d{\'e}ric Olivier and Laurent Chauvaud and Sylvain Chauvaud}
}
@article {7101,
	title = {A database of freshwater fish species of the Amazon Basin},
	journal = {Scientific data},
	volume = {7},
	year = {2020},
	pages = {1{\textendash}9},
	url = {https://www.nature.com/articles/s41597-020-0436-4},
	author = {J{\'e}z{\'e}quel, C{\'e}line and Tedesco, Pablo A and Bigorne, Remy and Maldonado-Ocampo, Javier A and Ortega, Hernan and Hidalgo, Max and Martens, Koen and Torrente-Vilara, Gislene and Zuanon, Jansen and Acosta, Astrid and others}
}
@article {7164,
	title = {Deciphering mollusc shell production: the roles of genetic mechanisms through to ecology, aquaculture and biomimetics.},
	journal = {Biol Rev Camb Philos Soc},
	year = {2020},
	month = {2020 Jul 31},
	abstract = {<p>Most molluscs possess shells, constructed from a vast array of microstructures and architectures. The fully formed shell is composed of calcite or aragonite. These CaCO crystals form complex biocomposites with proteins, which although typically less than 5\% of total shell mass, play significant roles in determining shell microstructure. Despite much research effort, large knowledge gaps remain in how molluscs construct and maintain their shells, and how they produce such a great diversity of forms. Here we synthesize results on how shell shape, microstructure, composition and organic content vary among, and within, species in response to numerous biotic and abiotic factors. At the local level, temperature, food supply and predation cues significantly affect shell morphology, whilst salinity has a much stronger influence across latitudes. Moreover, we emphasize how advances in genomic technologies [e.g. restriction site-associated DNA sequencing (RAD-Seq) and epigenetics] allow detailed examinations of whether morphological changes result from phenotypic plasticity or genetic adaptation, or a combination of these. RAD-Seq has already identified single nucleotide polymorphisms associated with temperature and aquaculture practices, whilst epigenetic processes have been shown significantly to modify shell construction to local conditions in, for example, Antarctica and New Zealand. We also synthesize results on the costs of shell construction and explore how these affect energetic trade-offs in animal metabolism. The cellular costs are still debated, with CaCO precipitation estimates ranging from 1-2 J/mg to 17-55 J/mg depending on experimental and environmental conditions. However, organic components are more expensive (~29 J/mg) and recent data indicate transmembrane calcium ion transporters can involve considerable costs. This review emphasizes the role that molecular analyses have played in demonstrating multiple evolutionary origins of biomineralization genes. Although these are characterized by lineage-specific proteins and unique combinations of co-opted genes, a small set of protein domains have been identified as a conserved biomineralization tool box. We further highlight the use of sequence data sets in providing candidate genes for in situ localization and protein function studies. The former has elucidated gene expression modularity in mantle tissue, improving understanding of the diversity of shell morphology synthesis. RNA interference (RNAi) and clustered regularly interspersed short palindromic repeats - CRISPR-associated protein 9 (CRISPR-Cas9) experiments have provided proof of concept for use in the functional investigation of mollusc gene sequences, showing for example that Pif (aragonite-binding) protein plays a significant role in structured nacre crystal growth and that the Lsdia1 gene sets shell chirality in Lymnaea stagnalis. Much research has focused on the impacts of ocean acidification on molluscs. Initial studies were predominantly pessimistic for future molluscan biodiversity. However, more sophisticated experiments incorporating selective breeding and multiple generations are identifying subtle effects and that variability within mollusc genomes has potential for adaption to future conditions. Furthermore, we highlight recent historical studies based on museum collections that demonstrate a greater resilience of molluscs to climate change compared with experimental data. The future of mollusc research lies not solely with ecological investigations into biodiversity, and this review synthesizes knowledge across disciplines to understand biomineralization. It spans research ranging from evolution and development, through predictions of biodiversity prospects and future-proofing of aquaculture to identifying new biomimetic opportunities and societal benefits from recycling shell products.</p>
},
	issn = {1469-185X},
	doi = {10.1111/brv.12640},
	author = {Clark, Melody S and Peck, Lloyd S and Arivalagan, Jaison and Backeljau, Thierry and Berland, Sophie and Cardoso, Joao C R and Caurcel, Carlos and Chapelle, Gauthier and De Noia, Michele and Dupont, Sam and Gharbi, Karim and Hoffman, Joseph I and Last, Kim S and Marie, Arul and Melzner, Frank and Michalek, Kati and Morris, James and Power, Deborah M and Ramesh, Kirti and Sanders, Trystan and Sillanp{\"a}{\"a}, Kirsikka and Sleight, Victoria A and Stewart-Sinclair, Phoebe J and Sundell, Kristina and Telesca, Luca and Vendrami, David L J and Ventura, Alexander and Wilding, Thomas A and Yarra, Tejaswi and Harper, Elizabeth M}
}
@article {8124,
	title = {Deciphering shell proteome within different Baltic populations of mytilid mussels illustrates important local variability and potential consequences in the context of changing marine conditions},
	journal = {Science of The Total Environment},
	volume = {745},
	year = {2020},
	month = {Jan-11-2020},
	pages = {140878},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2020.140878},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969720344077},
	author = {Arivalagan, Jaison and Marie, Benjamin and Chiappetta, Giovanni and Vinh, Jo{\"e}lle and Gallet, Xavier and Lebon, Matthieu and M{\textquoteright}Zoudi, Saloua and Dubois, Philippe and Berland, Sophie and Marie, Arul}
}
@article {7204,
	title = {Denitrification and associated nitrous oxide and carbon dioxide emissions from the Amazonian wetlands},
	journal = {Biogeosciences},
	volume = {17},
	year = {2020},
	month = {Jan-01-2020},
	pages = {4297 - 4311},
	doi = {10.5194/bg-17-4297-2020},
	url = {https://bg.copernicus.org/articles/17/4297/2020/},
	author = {Guilhen, J{\'e}r{\'e}my and Al Bitar, Ahmad and Sauvage, Sabine and Parrens, Marie and Martinez, Jean-Michel and Gwena{\"e}l Abril and Moreira-Turcq, Patricia and S{\'a}nchez-P{\'e}rez, Jos{\'e}-Miguel}
}
@article {7534,
	title = {Dietary taurine improves vision in different age gilthead sea bream (Sparus aurata) larvae potentially contributing to increased prey hunting success and growth},
	journal = {Aquaculture},
	year = {2020},
	month = {Jan-11-2020},
	pages = {736129},
	issn = {00448486},
	doi = {10.1016/j.aquaculture.2020.736129},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0044848620338357},
	author = {Gaon, A. and Nixon, O. and Tandler, A. and Falcon, J. and Besseau, L. and Escande, M. and El Sadin, S. and Allon, G. and Koven, W.}
}
@article {7046,
	title = {Disentangling the taxonomy of the subfamily Rasborinae (Cypriniformes, Danionidae) in Sundaland using DNA barcodes},
	journal = {Scientific Reports},
	volume = {10},
	year = {2020},
	month = {Jan-12-2020},
	abstract = {iodiversity hotspots have provided useful geographic proxies for conservation efforts. Delineated from a few groups of animals and plants, biodiversity hotspots do not reflect the conservation status of freshwater fishes. With hundreds of new species described on a yearly basis, fishes constitute the most poorly known group of vertebrates. This situation urges for an acceleration of the fish species inventory through fast and reliable molecular tools such as DNA barcoding. The present study focuses on the freshwater fishes diversity in the Sundaland biodiversity hotspot in Southeast Asia. Recent studies evidenced large taxonomic gaps as well as unexpectedly high levels of cryptic diversity, particularly so in the islands of Java and Bali. The Cypriniformes genera Rasbora and Nemacheilus account for most of the endemic species in Java and Bali, however their taxonomy is plagued by confusion about species identity and distribution. This study examines the taxonomic status of the Rasbora and Nemacheilus species in Java, Bali and Lombok islands through DNA barcodes, with the objective to resolve taxonomic confusion and identify trends in genetic diversity that can be further used for conservation matters. Several species delimitation methods based on DNA sequences were used and confirmed the status of most species, however several cases of taxonomic confusion and two new taxa are detected. Mitochondrial sequences argue that most species range distributions currently reported in the literature are inflated due to erroneous population assignments to the species level, and further highlight the sensitive conservation status of most Rasbora and Nemacheilus species on the islands of Java, Bali and Lombok.},
	keywords = {Conservation genetics, Cryptic diversity, Population fragmentation, Southeast Asia, taxonomy},
	doi = {10.1038/s41598-020-59544-9},
	url = {http://www.nature.com/articles/s41598-020-59544-9},
	author = {Sholihah, Arni and Delrieu-Trottin, Erwan and Sukmono, Tedjo and Dahruddin, Hadi and Risdawati, Renny and Elvyra, Roza and Wibowo, Arif and Kustiati, Kustiati and Busson, Frederic and Sauri, Sopian and Nurhaman, Ujang and Dounias, Edmond and Zein, Muhamad Syamsul Arifin and Fitriana, Yuli and Utama, Ilham Vemendra and Muchlisin, Zainal Abidin and Agn{\`e}se, Jean-Fran{\c c}ois and Hanner, Robert and Wowor, Daisy and Steinke, Dirk and Philippe Keith and R{\"u}ber, Lukas and Hubert, Nicolas}
}
@article {7533,
	title = {Exposure to Artificial Light at Night and the Consequences for Flora, Fauna, and Ecosystems},
	journal = {Frontiers in Neuroscience},
	volume = {14},
	year = {2020},
	month = {Apr-11-2021},
	doi = {10.3389/fnins.2020.602796},
	url = {https://www.frontiersin.org/articles/10.3389/fnins.2020.602796/full},
	author = {Falc{\'o}n, Jack and Torriglia, Alicia and Attia, Dina and Vi{\'e}not, Fran{\c c}oise and Gronfier, Claude and Behar-Cohen, Francine and Martinsons, Christophe and Hicks, David}
}
@article {7185,
	title = {Food sources, digestive efficiency and resource allocation in the sea cucumber Holothuria forskali (Echinodermata: Holothuroidea): Insights from pigments and fatty acids},
	journal = {Aquaculture Nutrition},
	volume = {26},
	year = {2020},
	month = {Apr-08-2022},
	pages = {1568-1583},
	abstract = {Various research projects in Europe and North Africa have recently intended to breed temperate holothurians to alleviate fishing pressure on natural populations. However, to date little is known about the nutritional requirements of East Atlantic and Mediterranean species. In this study, we propose a {\textquotedblleft}natural population{\textquotedblright}-oriented approach to characterize food sources, digestive efficiency and resources allocation based on the composition of pigments and fatty acids (FA) in gut contents and tis- sues (muscles, gonads and digestive tract walls) of wild individuals of the species Holothuria (Panningothuria) forskali (Delle Chiaje, 1823) sampled in Brittany (France). Our study reveals that neither green nor red algae enter the diet of H. forskali in spring and that the only fresh vegetal material found in gut contents is brown algae (very likely diatoms). The high nutritional quality of gut contents however contrasts with the detrital nature of the ingested food sources, suggesting that a trophic up- grading of organic matter occurs before digestion. In addition, unusual FA (i.e. only present in a few groups of living species) such as long-chain monounsaturated FA (especially the FA 23:1ω9) were found in large proportions in muscles and gonad and their effect on sea cucumber fitness needs further investigation.},
	keywords = {echinoderms, fatty acids, gut contents, Holothuria forskali, pigments, sea cucumbers},
	issn = {1353-5773},
	doi = {10.1111/anu.13103},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/anu.13103},
	author = {Frank David and C{\'e}dric Hubas and Laguerre, Hel{\`e}ne and Badou, Aicha and Herault, Gwen and Bordelet, Th{\'e}o and Ameziane, Nadia}
}
@article {7134,
	title = {Gonadotropin-inhibitory hormone in teleosts: New insights from a basal representative, the eel},
	journal = {General and Comparative Endocrinology},
	volume = {287},
	year = {2020},
	month = {Jan-02-2020},
	pages = {113350},
	issn = {00166480},
	doi = {10.1016/j.ygcen.2019.113350},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016648019303296},
	author = {Maugars, G. and Pasquier, J. and Atkinson, C. and Lafont, A.-G. and Campo, A. and Kamech, Nedia and Lefranc, B. and Leprince, J. and Sylvie Dufour and Rousseau, K.}
}
@article {7886,
	title = {Hi{\'e}rarchisation de la valeur de pr{\'e}servation des oiseaux nicheurs {\`a} enjeux : application d{\textquoteright}un indice int{\'e}grateur pour le d{\'e}partement d{\textquoteright}Ille-et-Vilaine},
	journal = {Naturae},
	year = {2020},
	month = {Jun-11-2021},
	doi = {10.5852/naturae2020a13},
	url = {http://sciencepress.mnhn.fr/fr/periodiques/naturae/2020/13},
	author = {Fr{\'e}d{\'e}ric Ysnel and Morel, Lo{\"\i}s and DEVOGEL, Pierre and ALTHERR, Thomas and Dugravot, S{\'e}bastien and MOREL, R{\'e}gis and LEBAS, Jean-Fran{\c c}ois}
}
@article {8548,
	title = {High fidelity of sea turtles to their foraging grounds revealed by satellite tracking and capture-mark-recapture: New insights for the establishment of key marine conservation areas},
	journal = {Biological Conservation},
	volume = {250},
	year = {2020},
	month = {Jan-10-2020},
	pages = {108742},
	issn = {00063207},
	doi = {10.1016/j.biocon.2020.108742},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0006320720308004},
	author = {Siegwalt, Flora and Benhamou, Simon and Girondot, Marc and Jeantet, Lor{\`e}ne and Martin, Jordan and Bonola, Marc and Lelong, Pierre and Grand, Cl{\'e}ment and Chambault, Philippine and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Maillet, Thomas and Andreani, Lucas and Campistron, Guilhem and Jacaria, Fran{\c c}ois and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and Etienne, Denis and Gresser, Julie and R{\'e}gis, Sidney and Lecerf, Nicolas and Frouin, C{\'e}dric and Lefebvre, Fabien and Aubert, Nathalie and Vedie, Fabien and Barnerias, Cyrille and Thieulle, Laurent and Guimera, Christelle and Bouaziz, Myriam and Pinson, Adrien and Flora, Fr{\'e}d{\'e}ric and George, Francis and Eggenspieler, Joffrey and Woignier, Thierry and All{\'e}nou, Jean-Pierre and Louis-Jean, Laurent and Chanteur, B{\'e}n{\'e}dicte and B{\'e}ranger, Christelle and Crillon, Jessica and Brador, Aude and Habold, Caroline and Le Maho, Yvon and Robin, Jean-Patrice and Chevallier, Damien}
}
@article {7469,
	title = {Highly variable taxa-specific coral bleaching responses to thermal stresses},
	journal = {Marine Ecology Progress Series},
	volume = {648},
	year = {2020},
	month = {27-08-2020},
	pages = {135 - 151},
	abstract = {Complex histories of chronic and acute sea surface temperature (SST) stresses are expected to trigger taxon- and location-specific responses that will ultimately lead to novel coral communities. The 2016 El Ni{\~n}o-Southern Oscillation provided an opportunity to examine largescale and recent environmental histories on emerging patterns in 226 coral communities distributed across 12 countries from East Africa to Fiji. Six main coral communities were identified that largely varied across a gradient of Acropora to massive Porites dominance. Bleaching intensity was taxon-specific and was associated with complex interactions among the 20 environmental variables that we examined. Coral community structure was better aligned with the historical temperature patterns between 1985 and 2015 than the 2016 extreme temperature event. Additionally, bleaching responses observed during 2016 differed from historical reports during past warm years. Consequently, coral communities present in 2016 are likely to have been reorganized by both long-term community change and acclimation mechanisms. For example, less disturbed sites with cooler baseline temperatures, higher mean historical SST background variability, and infrequent extreme warm temperature stresses were associated with Acropora-dominated communities, while more disturbed sites with lower historical SST background variability and frequent acute warm stress were dominated by stress-resistant massive Porites corals. Overall, the combination of taxon-specific responses, community-level reorganization over time, geographic variation, and multiple environmental stressors suggest complex responses and a diversity of future coral communities that can help contextualize management priorities and activities.},
	keywords = {acclimation, Adaptation, Climate Change, community structure, Geography, Stress responses},
	issn = {0171-8630},
	doi = {10.3354/meps13402},
	url = {https://www.int-res.com/abstracts/meps/v648/p135-151/},
	author = {McClanahan, T.R. and Darling, E.S. and Maina, J.M. and Muthiga, NA and D{\textquoteright}agata, S. and Leblond, J. and Arthur, R. and Jupiter, S.D. and Wilson, S.K. and Mangubhai, S. and Ussi, A.M. and Mireille M.M. Guillaume and Humphries, A.T. and Patankar, V. and Shedrawi, G. and Pagu, J. and Grimsditch, G.}
}
@article {6900,
	title = {Histamine and histidine decarboxylase in the olfactory system and brain of the common cuttlefish Sepia officinalis         (Linnaeus, 1758)},
	journal = {Journal of Comparative Neurology},
	volume = {528},
	year = {2020},
	month = {Feb-05-2020},
	pages = {1095 - 1112},
	issn = {0021-9967},
	doi = {10.1002/cne.v528.710.1002/cne.24809},
	url = {https://onlinelibrary.wiley.com/toc/10969861/528/7},
	author = {Scaros, Alexia T. and Aude Andouche and S{\'e}bastien Baratte and Croll, Roger P.}
}
@article {7105,
	title = {How good is the evidence that light at night can affect human health?},
	journal = {Graefe{\textquoteright}s Archive for Clinical and Experimental Ophthalmology},
	volume = {258},
	year = {2020},
	month = {Jan-02-2020},
	pages = {231 - 232},
	issn = {0721-832X},
	doi = {10.1007/s00417-019-04579-6},
	url = {http://link.springer.com/10.1007/s00417-019-04579-6},
	author = {Hicks, David and Attia, Dina and Behar-Cohen, Francine and Carr{\'e}, Samuel and Enouf, Olivier and Jack Falcon and Gronfier, Claude and Martinsons, Christophe and Metlaine, Arnaud and Tahkamo, Leena and Torriglia, Alicia and Fran{\c c}oiseVi{\'e}not}
}
@article {7131,
	title = {Identification and stable expression of vitellogenin receptor through vitellogenesis in the European eel},
	journal = {animal},
	volume = {14},
	year = {2020},
	month = {Jan-06-2020},
	pages = {1213 - 1222},
	issn = {1751-7311},
	doi = {10.1017/S1751731119003355},
	url = {https://www.cambridge.org/core/product/identifier/S1751731119003355/type/journal_article},
	author = {Morini, M. and Lafont, A. G. and Maugars, G. and Baloche, S. and Sylvie Dufour and Asturiano, J. F. and P{\'e}rez, L.}
}
@article {6916,
	title = {An integrated investigation of the effects of ocean acidification on adult abalone (Haliotis tuberculata)},
	journal = {ICES Journal of Marine Science},
	volume = {77},
	year = {2020},
	month = {Sep-01-2020},
	pages = {757 - 772},
	type = {research article},
	abstract = {Ocean acidification (OA) and its subsequent changes in seawater carbonate chemistry are threatening the survival of calcifying organisms.Due to their use of calcium carbonate to build their shells, marine molluscs are particularly vulnerable. This study investigated the effect of CO2-induced OA on adult European abalone (Haliotis tuberculata) using a multi-parameter approach. Biological (survival, growth), physiological (pHT of haemolymph, phagocytosis, metabolism, gene expression), and structural responses (shell strength, nano-indentation measurements,Scanning electron microscopy imaging of microstructure) were evaluated throughout a 5-month exposure to ambient (8.0) and low (7.7) pH conditions. During the first 2 months, the haemolymph pH was reduced, indicating that abalone do not compensate for the pH decrease of their internal fluid. Overall metabolism and immune status were not affected, suggesting that abalone maintain their vital functions when facing OA. However, after 4 months of exposure, adverse effects on shell growth, calcification, microstructure, and resistance were highlighted, whereas the haemolymph pH was compensated. Significant reduction in shell mechanical properties was revealed at pH 7.7, suggesting that OA altered the biomineral architecture leading to a more fragile shell. It is concluded that under lower pH, abalone metabolism is maintained at a cost to growth and shell integrity. This may impact both abalone ecology and aquaculture.},
	keywords = {Abalone, calcification, Gene Expression, Growth, mechanical properties, Ocean acidification, Physiology, shell microstructure},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsz257},
	url = {https://academic.oup.com/icesjms/article/77/2/757/5699268},
	author = {Avignon, Sol{\`e}ne and St{\'e}phanie Auzoux-Bordenave and Martin, Sophie and Dubois, Philippe and Badou, Aicha and Coheleach, Manon and Richard, Nicolas and Di Giglio, Sarah and Malet, Lo{\"\i}c and Servili, Arianna and Gaillard, Fanny and Huchette, Sylvain and Roussel, Sabine}
}
@article {8140,
	title = {InvaCost, a public database of the economic costs of biological invasions worldwideAbstract},
	journal = {Scientific Data},
	volume = {7},
	year = {2020},
	month = {Jan-12-2020},
	doi = {10.1038/s41597-020-00586-z},
	url = {http://www.nature.com/articles/s41597-020-00586-z},
	author = {Diagne, C. and Leroy, B. and Gozlan, R. E. and Vaissi{\`e}re, A.-C. and Assailly, C. and Nuninger, L. and Roiz, D. and Jourdain, F. and Jari{\'c}, I. and Courchamp, F.}
}
@article {8652,
	title = {InvaCost, a public database of the economic costs of biological invasions worldwide},
	journal = {Scientific Data},
	volume = {7},
	year = {2020},
	month = {Jan-12-2020},
	doi = {10.1038/s41597-020-00586-z},
	url = {https://www.nature.com/articles/s41597-020-00586-z},
	author = {Diagne, C. and Leroy, B. and Gozlan, R. E. and Vaissi{\`e}re, A.-C. and Assailly, C. and Nuninger, L. and Roiz, D. and Jourdain, F. and Jari{\'c}, I. and Courchamp, F.}
}
@article {7470,
	title = {Large geographic variability in the resistance of corals to thermal stress},
	journal = {Global Ecology and Biogeography},
	year = {2020},
	month = {May-10-2020},
	abstract = {<strong>Aim</strong>: Predictions for the future of coral reefs are largely based on thermal exposure and poorly account for potential geographic variation in biological sensitivity to thermal stress. Without accounting for complex sensitivity responses, simple climate exposure models and associated predictions may lead to poor estimates of future coral survival and lead to policies that fail to identify and implement the most appropriate interventions. To begin filling this gap, we evaluated a number of attributes of coral taxa and communities that are predicted to influence coral resistance to thermal stress over a large geographic range.<br>
<strong>Location</strong>:\&nbsp;Western Indo-Pacific and Central Indo-Pacific Ocean Realms.<br>
<strong>Major taxa studied</strong>:\&nbsp;Zooxanthellate Scleractinia {\textendash} hard corals.<br>
<strong>Methods</strong>:\&nbsp;We evaluated the geographic variability of coral resistance to thermal stress as the ratio of thermal exposure and sensitivity in 12 countries during the 2016 global-bleaching event. Thermal exposure was estimated by two metrics: (a) historical excess summer heat (cumulative thermal anomaly, CTA), and (b) a multivariate index of sea-surface temperature (SST), light, and water flow (climate exposure, CE). Sensitivity was estimated for 226 sites using coordinated bleaching observations and underwater surveys of coral communities. We then evaluated coral resistance to thermal stress using 48 generalized linear mixed models (GLMMs) to compare the potential influences of geography, historical SST variation, coral cover and coral richness.<br>
<strong>Results</strong>:\&nbsp;Geographic faunal provinces and ecoregions were the strongest predictors of coral resistance to thermal stress, with sites in the Australian, Indonesian and Fiji-Caroline Islands coral provinces having higher resistance to thermal stress than Africa-India and Japan-Vietnam provinces. Ecoregions also showed strong gradients in resistance with highest resistance to thermal stress in the western Pacific and Coral Triangle and lower resistance in the surrounding ecoregions. A more detailed evaluation of Coral Triangle and non-Coral Triangle sites found higher resistance to thermal stress within the Coral Triangle, associated with\&nbsp;c.\&nbsp;2.5 times more recent historical thermal anomalies and more centralized, warmer, and cool-water skew SST distributions, than in non-Coral Triangle sites. Our findings identify the importance of environmental history and geographic context in future predictions of bleaching, and identify some potential drivers of coral resistance to thermal stress.<br>
<strong>Main conclusions</strong>:\&nbsp;Simple threshold models of heat stress and coral acclimation are commonly used to predict the future of coral reefs. Here and elsewhere we show that large-scale responses of coral communities to heat stress are geographically variable and associated with differential environmental stresses and histories.},
	issn = {1466-822X},
	doi = {10.1111/geb.13191},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/geb.13191},
	author = {McClanahan, Timothy R. and Maina, Joseph M. and Darling, Emily S. and Mireille M.M. Guillaume and Muthiga, Nyawira A. and D{\textquoteright}agata, Stephanie and Leblond, Julien and Arthur, Rohan and Jupiter, Stacy D. and Wilson, Shaun K. and Mangubhai, Sangeeta and Ussi, Ali M. and Humphries, Austin T. and Patankar, Vardhan and Shedrawi, George and Julius, Pagu and Ndagala, January and Grimsditch, Gabriel}
}
@article {6724,
	title = {Microbial functional structure and stable isotopic variation of leptocephali across three current zones in the western South Pacific},
	journal = {Progress in Oceanography},
	volume = {182},
	year = {2020},
	pages = {102264},
	abstract = {The ecology of leptocephali remains poorly known but they appear to feed on marine snow that can vary spatially and temporally according to the food web dynamics. This study provided new information about the position of leptocephali within the functional structure of microbial plankton and other food web components of the western South Pacific (WSP) region at a large geographic scale including the New Caledonia, Fiji, and Samoa islands. The hydrographic structure varied with latitude, and nutrient levels were generally low but somewhat variable. Stable isotopic signatures were examined in relation to the 3 current zones of the eastward flowing South Equatorial Countercurrent (SECC; north), the westward South Equatorial Current (SEC; mid-latitudes), and the eastward South Tropical Countercurrent (STCC; south), and all zones were found to be primarily based on a heterotrophic planktonic functioning that were co-limited by inorganic nitrogen and phosphorus, with biomasses of planktonic groups varying with depth. Isotopic signatures of leptocephali were compared to the signatures of other mesozoplankton, micronekton, and Trichodesmium components of the food web, and in relation to the signatures of particulate organic matter (POM) that varied among the 3 collection depths. The isotopic signatures of six taxa of leptocephali, other taxonomic groups and POM showed interesting variability according to latitude and among some stations. The presence of Trichodesmium at the surface in the STCC zone influenced the isotopic signatures of POM and thus the signatures of leptocephali. The signatures of leptocephali were therefore linked with the overall food web and were consistent with the larvae feeding on marine snow components of POM. The two apparent groups of leptocephali with different isotopic signatures that have also been observed in other oceanic areas may be explained by feeding behavior at different depths or on different types of marine snow.},
	keywords = {Isotopic signature, Leptocephali, Meso-macro-zooplankton, Microbial loop, Micronekton, POM, Western South Pacific},
	issn = {0079-6611},
	doi = {10.1016/j.pocean.2020.102264},
	url = {http://www.sciencedirect.com/science/article/pii/S0079661120300021},
	author = {Leopold Ghinter and Christine Dupuy and Michael J. Miller and Alexandre Carpentier and Christel Lefran{\c c}ois and Anthony Acou and Jun Aoyama and Mari Kuroki and Li{\'e}nart, Camilla and Shun Watanabe and Katsumi Tsukamoto and Tsuguo Otake and Eric Feunteun}
}
@article {6915,
	title = {Ocean acidification impacts growth and shell mineralization in juvenile abalone (Haliotis tuberculata)},
	journal = {Marine Biology},
	volume = {167},
	year = {2020},
	month = {Jan-01-2020},
	type = {research article},
	abstract = {Ocean acidification is a major global driver that leads to substantial changes in seawater carbonate chemistry, with potentially serious consequences for calcifying organisms. Marine shelled molluscs are ecologically and economically important species, providing essential ecosystem services and food sources for other species. Due to their physiological characteristics and their use of calcium carbonate (CaCO3) to build their shells, molluscs are among the most vulnerable invertebrates with regard to ocean acidification, with early developmental stages being particularly sensitive to pH changes. This study investigated the effects of CO2-induced ocean acidification on juveniles of the European abalone Haliotis tuberculata, a commercially important gastropod species. Six-month-old juvenile abalones were cultured for 3 months at four pH levels (8.1, 7.8, 7.7, 7.6) representing current and predicted near-future conditions. Survival, growth, shell microstructure, thickness and strength were compared across the four pH treatments. After three months of exposure, significant reductions in juvenile shell length, weight and strength were revealed in the pH 7.6 treatment. SEM observations also revealed modified texture and porosity of the shell mineral layers as well as alterations of the periostracum at pH 7.6 which was the only treatment with an aragonite saturation state below 1. It is concluded that low pH induces both general effects on growth mechanisms and corrosion of deposited shell in H. tuberculata.<br>
This will impact both the ecological role of this species and the costs of its aquaculture.},
	keywords = {Abalone, Growth, Juvenile, Ocean acidification, Shell mineralization},
	issn = {0025-3162},
	doi = {10.1007/s00227-019-3623-0},
	url = {http://link.springer.com/10.1007/s00227-019-3623-0},
	author = {St{\'e}phanie Auzoux-Bordenave and Wessel, Nathalie and Badou, Aicha and Martin, Sophie and M{\textquoteright}Zoudi, Saloua and Avignon, Sol{\`e}ne and Roussel, Sabine and Huchette, Sylvain and Dubois, Philippe}
}
@article {7545,
	title = {Public Perceptions of Mangrove Forests Matter for Their Conservation},
	journal = {Frontiers in Marine Science},
	volume = {7},
	year = {2020},
	month = {Jul-11-2021},
	abstract = {Iconic species and landscapes attract public attention to help reverse the degradation of ecosystems and their biodiversity (Thompson and Rog, 2019); sharing their images on social media can act as a powerful way to influence perceptions and drive positive actions by the public (Wu et al., 2018). Social media platforms such as Twitter, Facebook and Instagram have been used to great effect to communicate the urgency required to halt and reverse tropical forest loss (Lamb et al., 2005) and the plight of coral reefs (Curnock et al., 2019). Ecosystems such as seagrass meadows, mudflats, and mangrove forests receive substantially less media exposure (Duarte et al., 2008). Yet these under-recognized ecosystems are hugely important for local and global societies, providing benefits such as shoreline protection (Barbier, 2016), fisheries (Carrasquilla-Henao and Juanes, 2017), carbon capture and storage (Duarte et al., 2013), alongside supporting rich marine and terrestrial biodiversity (Sievers et al., 2019;\&nbsp;Thompson and Rog, 2019) (Figure 1). Apart from these important ecosystem functions, goods and services, mangrove forests are home to a huge diversity of organisms with ecologically and evolutionarily unique adaptations to life in the intertidal zone, including vivipary and salt tolerance in trees, air-breathing in crabs and amphibious behavior in fish (mudskippers); this makes mangrove forests a dynamic and fascinating evolutionary laboratory.},
	doi = {10.3389/fmars.2020.60365110.3389/fmars.2020.603651.s001},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2020.603651/full},
	author = {Dahdouh-Guebas, Farid and Ajonina, Gordon N. and Amir, A. Aldrie and Andradi-Brown, Dominic A. and Aziz, Irfan and Balke, Thorsten and Barbier, Edward B. and Cannicci, Stefano and Cragg, Simon M. and Cunha-Lignon, Mar{\'\i}lia and Curnick, David J. and Duarte, Carlos M. and Duke, Norman C. and Endsor, Charlie and Fratini, Sara and Feller, Ilka C. and Fromard, Fran{\c c}ois and Hug{\'e}, Jean and Huxham, Mark and Kairo, James G. and Kajita, Tadashi and Kathiresan, Kandasamy and Koedam, Nico and Lee, Shing Yip and Lin, Hsing-Juh and Mackenzie, Jock R. and Mangora, Mwita M. and Marchand, Cyril and Tarik Meziane and Minchinton, Todd E. and Pettorelli, Nathalie and Polan{\'\i}a, Jaime and Polgar, Gianluca and Poti, Meenakshi and Primavera, Jurgenne and Quarto, Alfredo and Rog, Stefanie M. and Satyanarayana, Behara and Schaeffer-Novelli, Yara and Spalding, Mark and Van der Stocken, Tom and Wodehouse, Dominic and Yong, Jean W. H. and Zimmer, Martin and Friess, Daniel A.}
}
@article {7088,
	title = {Quantitative food web modeling unravels the importance of the microphytobenthos-meiofauna pathway for a high trophic transfer by meiofauna in soft-bottom intertidal food webs.},
	journal = {Ecological Modelling},
	volume = {430},
	year = {2020},
	abstract = {Meiofauna are known to have an important role on many ecological processes, although, their role in food web dynamics is often poorly understood, partially as they have been an overlooked and under sampled organism group. Here, we used quantitative food web modeling to evaluate the trophic relationship between meiofauna and their food sources and how meiofauna can mediate the carbon flow to higher trophic levels in five contrasting soft-bottom intertidal habitats (including seagrass beds, mudflats and sandflats). Carbon flow networks were constructed using the linear inverse model-Markov chain Monte Carlo technique, with increased resolution of the meiofauna compartments (i.e. biomass and feeding ecology of the different trophic groups of meiofauna) compared to most previous modeling studies. These models highlighted that the flows between the highly productive microphytobenthos and the meiofauna compartments play an important role in transferring carbon to the higher trophic levels, typically more efficiently so than macrofauna. The pathway from microphytobenthos to meiofauna represented the largest flow in all habitats and resulted in high production of meiofauna independent of habitat. All trophic groups of meiofauna, except for selective deposit feeders, had a very high dependency on microphytobenthos. Selective deposit feeders relied instead on a wider range of food sources, with varying contributions of bacteria, microphytobenthos and sediment organic matter. Ecological network analyses (e.g. cycling, throughput and ascendency) of the modeled systems highlighted the close positive relationship between the food web efficiency and the assimilation of high-quality food sources by primary consumers, e.g. meiofauna and macrofauna. Large proportions of these flows can be attributed to trophic groups of meiofauna. The sensitivity of the network properties to the representation of meiofauna in the models leads to recommending a greater attention in ecological data monitoring and integrating meiofauna into food web models. {\textcopyright} 2020 Elsevier B.V.},
	keywords = {Carbon, Carbon flow networks, deposit feeder, Deposits, Ecological network analysis, Ecological process, Ecosystems, Feeding, Feeding ecology, food web, Food web model, intertidal community, intertidal habitats, Inverse problems, linear inverse model, Linear inverse models, Markov chain Monte Carlo techniques, Markov chains, Meiofauna, Microphytobenthos, Monte Carlo methods, Phytobenthos, quantitative analysis, Sediment organic matters, soft-bottom environment, stable isotope mixing models, trophic level, Trophic relationships, Trophic structure},
	issn = {03043800 (ISSN)},
	doi = {10.1016/j.ecolmodel.2020.109129},
	author = {van der Heijden, L.H. and Nathalie Niquil and Haraldsson, M. and Asmus, R.M. and Pacella, S.R. and Graeve, M. and Rzeznik-Orignac, J. and Asmus, H. and Saint-B{\'e}at, B. and Lebreton, B.}
}
@article {6469,
	title = {Realistic environmental exposure to microplastics does not induce biological effects in the Pacific oyster Crassostrea gigas},
	journal = {Marine Pollution Bulletin},
	volume = {150},
	year = {2020},
	month = {Jan-01-2020},
	pages = {110627},
	abstract = {The aim of the present study was to evaluate the presence and potential toxic effects of plastic fragments(\&lt; 400μm) of polyethylene and polypropylene on the Pacific oysterCrassostrea gigas.Oysters were exposed toenvironmentally relevant concentrations (0, 0.008, 10, 100μg of particles/L) during 10 days, followed by adepuration period of 10 days in clean seawater. Effects of microplastics were evaluated on the clearance rate oforganisms, tissue alteration, antioxidant defense, immune alteration and DNA damage. Detection and quanti-fication of microplastics in oyster{\textquoteright}s tissues (digestive gland, gills and other tissues) and biodeposits using infraredmicroscopy were also conducted. Microplastics were detected in oyster{\textquoteright}s biodeposits following exposure to alltested concentrations: 0.003, 0.006 and 0.05 particles/mg of biodeposits in oysters exposed to 0.008, 10 and100μg of particles/L, respectively. No significant modulation of biological markers was measured in organismsexposed to microplastics in environmentally relevant conditions.},
	keywords = {biodeposits, biomarkers, bivalves, Crassostrea gigas, microplastics},
	issn = {0025326X},
	doi = {10.1016/j.marpolbul.2019.110627},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0025326X19307751},
	author = {Revel, Messika and Ch{\^a}tel, Am{\'e}lie and Perrein-Ettajani, Hanane and Bruneau, M{\'e}lanie and Akcha, Farida and Sussarellu, Rossana and Rouxel, Julien and Katherine Costil and Decottignies, Priscilla and Cognie, Bruno and Lagarde, Fabienne and Mouneyrac, Catherine}
}
@article {7777,
	title = {Resolving the trade-off between silver eel escapement and hydropower generation with simple decision rules for turbine shutdown},
	journal = {Journal of Environmental Management},
	volume = {261},
	year = {2020},
	month = {Jan-05-2020},
	pages = {110212},
	issn = {03014797},
	doi = {10.1016/j.jenvman.2020.110212},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S030147972030147X},
	author = {Teichert, Nils and T{\'e}tard, St{\'e}phane and Thomas Trancart and Eric Feunteun and Anthony Acou and de Oliveira, Eric}
}
@article {6736,
	title = {Resolving the trade-off between silver eel escapement and hydropower generation with simple decision rules for turbine shutdown},
	journal = {Journal of Environmental Management},
	volume = {261},
	year = {2020},
	pages = {110212},
	abstract = {Hydropower plants are commonly reported as a major cause of the worldwide decline of freshwater eels (Anguillidae), so that management solutions are urgently needed to mitigate their impacts. Where downstream passage solutions are complex to develop, turbine shutdown appears as an effective management solution to protect silver eels during their river migration toward spawning areas. However, the definition of operational decision rules for turbine shutdown is challenging due to the duality between the benefit for eel conservation and the concomitant cost in term of hydropower production. Here, we proposed a decision framework for turbine shutdown based on simple hydrological criteria to guide negotiations between stakeholders toward a trade-off between silver eel escapement and hydropower generation. Eel migration was assumed to be triggered by a minimum river flow associated with a minimum discharge pulse, so that threshold values can be directly implemented as decision rules for turbine shutdown. To estimate relevant thresholds, a generic methodological framework was developed to generate alternative decision rules from data collected at hydropower plants, which can include telemetry surveys and estimates of eel abundance. A multiple-criteria decision analysis was then conducted to rank alternatives and to determine the best compromise between promoting silver eel escapement and limiting turbine shutdown duration. Graphic outputs can help stakeholders to understand the competitive interests between eel conservation and hydropower production, while visually identifying a range of consensual alternatives to support negotiations in the choice of operational thresholds. The method was illustrated for three river systems in Europe featured by distinct hydrological conditions and can be applied in other areas, providing that eel monitoring surveys and flow data are available.},
	keywords = {Conservation policy, Decision rules, Multiple-criteria decision, Turbine shutdown},
	issn = {0301-4797},
	doi = {https://doi.org/10.1016/j.jenvman.2020.110212},
	url = {http://www.sciencedirect.com/science/article/pii/S030147972030147X},
	author = {Teichert, Nils and St{\'e}phane T{\'e}tard and Thomas Trancart and Eric Feunteun and Anthony Acou and Eric de Oliveira}
}
@article {8151,
	title = {Seasonal variations of phytoplankton assemblages in relation to environmental factors in Mediterranean coastal waters of Morocco, a focus on HABs species},
	journal = {Harmful Algae},
	volume = {96},
	year = {2020},
	pages = {101819},
	abstract = {Studies on phytoplankton and in particular Harmful Algal Blooms (HABs) species in southern Mediterranean waters are scarce. We performed from April 2008 to June 2009 weekly investigations on microphytoplankton community structure and abundance in two contrasted marine ecosystems located in the western Moroccan Mediterranean coast, M{\textquoteright}diq Bay and Oued Laou Estuary. Simultaneously, we measured the main physico-che- mical parameters. Globally, the two studied areas showed comparable values of the assessed abiotic environ- mental factors. Temperature and salinity followed seasonal variation with values ranging from 13.5 {\textdegree}C to 21.4 {\textdegree}C and 31 to 36.8, respectively. Average nutrient values in surface water ranged from 0.7 to 45.76\&nbsp;μM for dissolved inorganic nitrogen, 0.02{\textendash}2.10\&nbsp;μM for PO4\&nbsp;and 0.23{\textendash}17.46\&nbsp;μM for SiO4\&nbsp;in the study areas. A total of 92 taxa belonging to 8 taxonomic classes were found. The highest number of microphytoplankton abundance reached 1.2\&nbsp;{\texttimes}\&nbsp;106\&nbsp;cells L-1\&nbsp;with diatoms being the most abundant taxa. Factorial Discriminant Analysis (FDA) and Spearman correlation test showed a significant seasonal discrimination of dominant microphytoplankton spe- cies. These micro-organisms were associated with different environmental variables, in particular temperature and salinity. Numerous HABs species were encountered regularly along the year. Although\&nbsp;Dinophysis\&nbsp;species and\&nbsp;Prorocentrum lima\&nbsp;were present in both sites, no Lipophilic Shellfish Poisoning was detected for the analyzed bivalve mollusks. Domoic acid (DA), produced by toxic species of\&nbsp;Pseudo-nitzschia\&nbsp;was found with concentrations up to 18 μg DA g-1\&nbsp;in the smooth clam\&nbsp;Callista chione. Data showed that the observed persistent and dramatic Paralytic Shellfish Poisoning (PSP) intoxication of mollusks resulted probably of\&nbsp;Gymnodinium catenatum\&nbsp;pro- liferations in both studied areas. Contrary to\&nbsp;C. chione, the cockle\&nbsp;Achanthocardia tuberculatum\&nbsp;showed a per- manent and extremely high toxicity level during the 15 months survey with up to 7545 μg Equivalent Saxitoxin kg-1\&nbsp;flesh (ten times higher than the sanitary threshold of 800 μg eqSTX Kg-1flesh). The present work high- lights for the first time the dynamic of microphytoplankton including HABs species and their associated toxin accumulation in the commercially exploited shellfish in the southern western Mediterranean waters of Morocco. Furthermore, the acquired data will help us to improve the monitoring of HABs species and related toxins in these coastal marine systems.},
	author = {Benlahcen Rijal Leblad and Rachid Amnhir and Sagou Reqia and Ferdaous Sitel and Mohamed Marhraoui and Mohamed Karim Ouelad Abdellah and Beno{\^\i}t V{\'e}ron and Hassan Er-Raioui and Mohamed Laabir}
}
@article {8116,
	title = {Seasonal variations of phytoplankton assemblages in relation to environmental factors in Mediterranean coastal waters of Morocco, a focus on HABs species},
	journal = {Harmful Algae},
	volume = {96},
	year = {2020},
	month = {Jan-06-2020},
	pages = {101819},
	issn = {15689883},
	doi = {10.1016/j.hal.2020.101819},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1568988320300986},
	author = {Rijal Leblad, Benlahcen and Amnhir, Rachid and Reqia, Sagou and Sitel, Ferdaous and Daoudi, Mouna and Marhraoui, Mohamed and Ouelad Abdellah, Mohamed Karim and Beno{\^\i}t V{\'e}ron and Er-Raioui, Hassan and Laabir, Mohamed}
}
@article {7187,
	title = {Shells of the bivalve <i>Astarte moerchi</i>               give new evidence of a strong pelagic-benthic coupling shift occurring since the late 1970s in the North Water polynya},
	journal = {Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
	volume = {378},
	year = {2020},
	month = {Feb-10-2020},
	pages = {20190353},
	abstract = {Climate changes in the Arctic may weaken the currently tight pelagic-benthic coupling. In response to decreasing sea ice cover, arctic marine systems are expected to shift from a {\textquoteleft}sea-ice algae{\textendash}benthos{\textquoteright} to a {\textquoteleft}phytoplankton-zooplankton{\textquoteright} dominance. We used mollusc shells as bioarchives and fatty acid trophic markers to estimate the effects of the reduction of sea ice cover on the food exported to the seafloor. Bathyal bivalve\&nbsp;Astarte moerchi\&nbsp;living at 600 m depth in northern Baffin Bay reveals a clear shift in growth variations and Ba/Ca ratios since the late 1970s, which we relate to a change in food availability. Tissue fatty acid compositions show that this species feeds mainly on microalgae exported from the euphotic zone to the seabed. We, therefore, suggest that changes in pelagic-benthic coupling are likely due either to local changes in sea ice dynamics, mediated through bottom-up regulation exerted by sea ice on phytoplankton production, or to a mismatch between phytoplankton bloom and zooplankton grazing due to phenological change. Both possibilities allow a more regular and increased transfer of food to the seabed.<br>
<br>
This article is part of the theme issue {\textquoteleft}The changing Arctic Ocean: consequences for biological communities, biogeochemical processes and ecosystem functioning{\textquoteright}.},
	issn = {1364-503X},
	doi = {10.1098/rsta.2019.0353},
	url = {https://royalsocietypublishing.org/doi/10.1098/rsta.2019.0353},
	author = {Fr{\'e}d{\'e}ric Olivier and Gaillard, Blandine and Thebault, Julien and Tarik Meziane and Tremblay, Rejean and Dumont, Dany and B{\'e}langer, Simon and Gosselin, Michel and Jolivet, Aur{\'e}lie and Chauvaud, Laurent and Martel, Andr{\'e} L. and Rysgaard, S{\o}ren and Olivier, Anne-H{\'e}l{\`e}ne and Pettr{\'e}, Julien and Mars, J{\'e}r{\^o}me and Gerber, Silvain and Archambault, Philippe}
}
@article {7990,
	title = {A spatial food web model to investigate potential spillover effects of a fishery closure in an offshore wind farm},
	journal = {Journal of Marine Systems},
	volume = {212},
	year = {2020},
	month = {Jan-12-2020},
	pages = {103434},
	issn = {09247963},
	doi = {10.1016/j.jmarsys.2020.103434},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0924796320301305},
	author = {Halouani, Ghassen and Villanueva, Ching-Maria and Raoux, Aurore and Dauvin, Jean Claude and Ben Rais Lasram, Frida and Foucher, Eric and Le Loc{\textquoteright}h, Francois and Safi, Georges and Araignous, Emma and Jean-Paul Robin and Nathalie Niquil}
}
@article {7988,
	title = {Stock assessment and management of cephalopods: advances and challenges for short-lived fishery resourcesAbstract},
	journal = {ICES Journal of Marine Science},
	year = {2020},
	month = {Mar-05-2020},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsaa038},
	url = {https://academic.oup.com/icesjms/advance-article/doi/10.1093/icesjms/fsaa038/5828442},
	author = {Arkhipkin, Alexander I and Hendrickson, Lisa C and Pay{\'a}, Ignacio and Pierce, Graham J and Roa-Ureta, Ruben H and Jean-Paul Robin and Winter, Andreas},
	editor = {Browman, Howard}
}
@article {9258,
	title = {Taxonomy and 18S rDNA-based phylogeny of Henneguya multiradiatus n. sp. (Cnidaria: Myxobolidae) a parasite of Brochis multiradiatus from Peruvian Amazon},
	journal = {Microbial Pathogenesis},
	volume = {147},
	year = {2020},
	month = {Jan-10-2020},
	pages = {104372},
	issn = {08824010},
	doi = {10.1016/j.micpath.2020.104372},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0882401020307385},
	author = {Mathews, Patrick D. and Mertins, Omar and Espinoza, Luis L. and Milanin, Tiago and Alama-Bermejo, Gema and Audebert, Fabienne and Morandini, Andr{\'e} C.}
}
@article {7565,
	title = {Time-Dynamic Food Web Modeling to Explore Environmental Drivers of Ecosystem Change on the Kerguelen Plateau},
	journal = {Frontiers in Marine Science},
	volume = {7},
	year = {2020},
	pages = {641},
	abstract = {Understanding the impacts of climate and fishing on marine systems is important for ecosystem-based management in the Southern Ocean, but can be difficult to evaluate due to patchy data in space and time. We developed the first time-dynamic food web model for the Kerguelen Plateau using Ecopath with Ecosim to explore likely drivers of change in this relatively data-poor region. The Kerguelen Plateau is located at the centre of intersecting frontal systems and is inhabited by one of the largest populations of the commercially important Patagonian toothfish. We used this model to evaluate the environmental and human drivers of food web dynamics in the region by calibrating it with French and Australian fisheries data from 1997{\textendash}2018 and biomass data for the period 1986{\textendash}2018. Fishing was not identified as a driver of food web dynamics within this model, which could indicate that current management strategies are sustainable. A correlation analysis with environmental parameters likely to drive food web dynamics (sea surface temperature, zonal wind, Southern Annular Mode and chlorophyll a concentration) highlighted cool sea surface temperature, higher zonal wind speeds and negative phases of the Southern Annular Mode as important drivers of change, particularly during the summer. As the Southern Ocean is predicted to warm and winds are expected to intensify under future climate change, our study illustrates the importance of considering environmental change in ecosystem management.},
	issn = {2296-7745},
	doi = {10.3389/fmars.2020.00641},
	url = {https://www.frontiersin.org/article/10.3389/fmars.2020.00641},
	author = {Subramaniam, Roshni C. and Melbourne-Thomas, Jessica and Corney, Stuart P. and Alexander, Karen and Clara P{\'e}ron and Ziegler, Philippe and Swadling, Kerrie M.}
}
@article {7026,
	title = {Towards transferability in fish migration models: A generic operational tool for predicting silver eel migration in rivers},
	journal = {Science of The Total Environment},
	volume = {739},
	year = {2020},
	month = {Jan-10-2020},
	pages = {140069},
	abstract = {In the global context of river fragmentation, predicting fish migration is urgent to implement management actions aimed at protecting and promoting the free movement of diadromous fish. However, large-scale applicability of conservation measures requires transferable models that enable prediction of migration even in data-poor regions. Here, we surveyed 12 contrasted European river sites to predict the activity peaks of silver eels (Anguilla anguilla) during river migration towards spawning areas through an ensemble modelling approach. Site-specific Boosted Regression Tree (BRT) models were adjusted using standardized hydrological variables to predict migration probability, which were aggregated in consensus predictions. Results of independent cross-validations demonstrated that silver eel migration runs were accurately predicted in response to changes in river discharge. Transferability and predictive performance were improved by considering catchment-size dissimilarity between river sites (85 to 109 930 km{\texttwosuperior}) when combining the site-specific predictions. Nevertheless, we provided two examples for which the effects of human actions on flow conditions were so high that they prevented reliable predictions of migration runs. Further contributions should thus take advantage of the flexibility of our approach for updating model collection with new sites to extend the predictive performance under a larger range of ecological conditions. Our transferable hydrological-based modelling framework offers an opportunity to implement large-scale management strategies for eel conservation, even in rivers where eel monitoring data lack. The BRT models and prediction functions were compiled in an R package named {\textquoteleft}silvRpeak{\textquoteright} to facilitate operational implementation by end-user managers, which can determine when mitigation measures should be implemented to improve river continuity (e.g. turbine shutdown and sluice gate opening) and balance their economic activity towards eel conservation. The only input required is discharge records that are widely available across European hydrological stations.},
	keywords = {eel runs prediction, ensemble modelling, European eel management, fish migration, model transferability, river obstacle},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2020.140069},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969720335890},
	author = {Teichert, Nils and T{\'e}tard, St{\'e}phane and Thomas Trancart and de Oliveira, Eric and Anthony Acou and Alexandre Carpentier and Bourillon, Bastien and Eric Feunteun}
}
@article {7273,
	title = {Unidirectional response to bidirectional selection on body size. I. Phenotypic, life-history, and endocrine responses},
	journal = {Ecology and Evolution},
	year = {2020},
	month = {Jan-09-2021},
	issn = {2045-7758},
	doi = {10.1002/ece3.6713},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/ece3.6713},
	author = {Renneville, Cl{\'e}mentine and Millot, Alexis and Agostini, Simon and Carmignac, David and Maugars, Gersende and Sylvie Dufour and Le Rouzic, Arnaud and Edeline, Eric}
}
@article {7163,
	title = {Using Modern Conservation Tools for Innovative Management of Coral Reefs: The MANACO ConsortiumVideo_1.MP4},
	journal = {Frontiers in Marine Science},
	volume = {7},
	year = {2020},
	month = {Sep-07-2021},
	doi = {10.3389/fmars.2020.0060910.3389/fmars.2020.00609.s001},
	url = {https://www.frontiersin.org/article/10.3389/fmars.2020.00609/full},
	author = {Selmoni, Oliver and Lecellier, Ga{\"e}l and Ainley, Lara and Collin, Antoine and Doucet, Raimana and Dubousquet, Vaimiti and Feremaito, Hudson and Ito Waia, Edouard and Kininmonth, Stuart and Magalon, H{\'e}l{\`e}ne and Malimali, Siola{\textquoteright}a and Maugateau, Ateliana and Meibom, Anders and Mosese, Stephen and Ren{\'e}-Trouillefou, Malika and Satoh, Noriyuki and van Oppen, Madeleine J. H. and Xozam{\'e}, Andr{\'e} and Y{\'e}kawene, Maxime and Joost, St{\'e}phane and Berteaux-Lecellier, V{\'e}ronique}
}
@article {6730,
	title = {When {\textquotedblleft}safe{\textquotedblright} dams kill: Analyzing combination of impacts of overflow dams on the migration of silver eels},
	journal = {Ecological Engineering},
	volume = {145},
	year = {2020},
	pages = {105741},
	abstract = {1. The drastic decline in European eel\&nbsp;Anguilla anguilla\&nbsp;stock is now widely recognized. However, while various causes for this decline have been identified, the relative importance of each cause remains unclear.<br />
<br />
2. During the catadromous migration of silver eels, the negative impact of dams is frequently highlighted, but mainly for powered dams (with turbines) or where connectivity is completely ruptured. Mechanical impact due to turbine blades is often considered the most important cause of mortality of silver eels during downstream migration. Consequently, non-powered dams equipped with spillways are often considered safe for the passage of migrating silver eels.<br />
<br />
3. We hypothesized that, to understand the negative impacts of dams, a much wider context must be considered than turbine mortality alone. Using an acoustic telemetry survey of silver eels, we demonstrated the negative effects of non-powered dams on downstream migration.<br />
<br />
4. Five main impacts on eel populations were highlighted: (i) the attenuation or loss of triggering factors, leading to an absence of or delay in migration; (ii) extra delays and extra distances travelled when crossing the dam; (iii) extra energetic costs of the additional distance travelled as result of exploring the dam and the reservoir to find other escape passages; (iv) the selection of a more risky behavioral phenotype, i.e., bold eels; and (v) direct blocking once migration has started. Mortality was evaluated as a supplementary impact. Some of these effects (attenuation of triggers, extra delays to cross the dam) might be more important than the same effect from powered dams, probably due to the constant high water discharge required for turbines that facilitate the passage of eels.<br />
<br />
5. As these {\textquotedblleft}safe{\textquotedblright} dams are very widespread, they must be considered a potential threat to effective eel conservation.},
	keywords = {Acoustic telemetry, Migration, mortality, Non-powered dams, Silver eels, Turbines drinking water intake},
	issn = {0925-8574},
	doi = {https://doi.org/10.1016/j.ecoleng.2020.105741},
	url = {http://www.sciencedirect.com/science/article/pii/S092585742030029X},
	author = {Thomas Trancart and Alexandre Carpentier and Anthony Acou and Fabien Charrier and Virgile Mazel and Valentin Danet and Eric Feunteun}
}
@article {6879,
	title = {Are shallow-water shrimps proxies for hydrothermal-vent shrimps to assess the impact of deep-sea mining?},
	journal = {Marine Environmental Research},
	volume = {151},
	year = {2019},
	month = {Jan-10-2019},
	pages = {104771},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2019.104771},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0141113619303216},
	author = {Mestre, N.C. and Auguste, M. and de S{\'a}, L.C. and Fonseca, T.G. and Cardoso, C. and Brown, A. and Barthelemy, D. and Charlemagne, N. and Hauton, C. and Machon, J. and Juliette Ravaux and Bruce Shillito and Thatje, S. and Bebianno, M.J.}
}
@article {7110,
	title = {AVIS et RAPPORT de l{\textquoteright}Anses relatif aux effets sur la sant{\'e} humaine et sur l{\textquoteright}environnement (faune et flore)  des syst{\`e}mes utilisant des diodes {\'e}lectroluninescentes (LED)},
	year = {2019},
	institution = {ANSES},
	address = {Maisons-Alfort},
	keywords = {Fauna, Flora, health, LED, Light-at-night, pollution},
	issn = {Saisine n{\textdegree} {\guillemotleft} 2014-SA-0253 {\guillemotright}},
	url = {https://www.anses.fr/fr/search/site/LED?iso1=fr\&iso2=en},
	author = {Attia, Dina and Behard-Cohen Francine and Carr{\'e}, Samuel and Enouf, Olivier and Jack Falcon and Gronfier, Claude and Hicks, David and Martinsons, Christophe and Metlaine, Arnaud and Tahkamo, Leena and Torriglia, Alicia and Vi{\'e}not, Fran{\c c}oise}
}
@article {6859,
	title = {Beaches seasonal and paroxysmal morphosedimentary dynamics. results of 10 years Martinique coastal observation network. },
	journal = {Journal of Coastal Research},
	volume = {SI 88},
	year = {2019},
	pages = {172-184},
	author = {Franck Dolique and Sedrati, M. and Charpentier, J. and Jeanson, Matthieu and Cohen, O. and Dupuy, L. and Alami, S.}
}
@article {6742,
	title = {Behaviour of endangered European eels in proximity to a dam during downstream migration: Novel insights using high accuracy 3D acoustic telemetry},
	journal = {Ecology of Freshwater Fish},
	volume = {29},
	year = {2019},
	pages = {266-279},
	abstract = {River infrastructures such as weirs, hydropower stations or water reservoirs represent obstructions to migration for diadromous fish. Knowledge of accurate behaviour of fish in front of such structures is required to protect migrants from hazardous areas, guide them towards safe passage or adapt structure to improve the escapement. We developed and made available a method to process acoustic telemetry data based on Time Difference Of Arrival analysis to accurately locate tagged fish. Improved accuracy allows the detection of escape routes and description of dam-crossing tactics. Sixteen tagged eels were tracked with high accuracy (1{\textendash}2\&nbsp;m) and 1 location min-1 frequency during their exploration period on reaching the dam. Two migration routes (spillways and bottom compensation flow pipe) were used by 77\% and 23\% of eels respectively. Spillways were the preferred route, but a median of 16\&nbsp;days were required to pass the dam versus 1.1\&nbsp;days via the compensation pipe. A minimal water crest of 40\&nbsp;cm was required for passage via spillways. Eels passing through the compensation pipe were exclusively nocturnal and mainly explored the bottom of the dam. Eels passing through spillways explored the whole dam area by night and day, and were not attracted to the compensation pipe entrance. With global warming, more frequent drought periods are expected, potentially leading to decreased opportunities for eels to migrate across safer dams by spillways. To conserve this endangered species, dam management strategies that account for expected hydrologic conditions and distinct exploration behaviours are needed.},
	keywords = {3D acoustic telemetry, dam, diadromous fish, downstream migration, European eel},
	doi = {10.1111/eff.12512},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12512},
	author = {Thomas Trancart and Alexandre Carpentier and Anthony Acou and Danet, Valentin and Elliott, Sophie and Eric Feunteun}
}
@article {6741,
	title = {Changes in marine phytoplankton diversity: Assessment under the Marine Strategy Framework Directive},
	journal = {Ecological Indicators},
	volume = {102},
	year = {2019},
	pages = {265 - 277},
	abstract = {The Marine Strategy Framework Directive requires EU Member States to assess the Good Environmental Status (GES) of their marine waters in a coherent and strategic manner. For the regional assessment of biodiversity, the OSPAR Intersessional Coordination Group of Biodiversity Assessment and Monitoring (ICG-COBAM) provides substantial advice. Through expert working groups, phytoplankton indicators are currently being developed to measure the state and the change in pelagic diversity, to quantify food web dynamics and to measure the extent of eutrophication impacts. We developed a multi-metric indicator that is compliant with the common OSPAR indicator {\textquotedblleft}Changes in plankton diversity{\textquotedblright} (PH3). The aim was to describe the structure of the phytoplankton community (alpha diversity) and to detect significant temporal changes (beta diversity) to evaluate the health of pelagic habitats. In this pilot study, we used three coastal time-series in the Western Channel and the north of the Bay of Biscay (North Atlantic, France) to test the efficiency and the performance of several existing diversity indices. We validated two alpha diversity indices, namely the Menhinick Index (D) and the Hulburt Index (δ), based on their complementary ecological information, their strong relationship with habitat characteristics, and their relative ease of interpretation for stakeholders. Temporal shifts or rate of change in community structure were detected by the Local Contributions to Beta Diversity index (LCBD; a beta diversity measure). For the years where significantly high LCBD values were found, the Importance Value Index (IVI) was calculated to potentially identify the taxa (genus) responsible for the {\textquotedblleft}unusual{\textquotedblright} community structure. For example, at the Ouest Loscolo site in 2008, an elevated LCBD (0.45) coincided with a high dominance value (Hulburt{\textquoteright}s Index) caused by the occurrence of a monospecific bloom of Leptocylindrus spp. (IVI = 73\%) in July (2.22 {\texttimes} 106 cells L-1) and October (8 {\texttimes} 106 cells L-1). In this way, PH3 informs on different aspects of phytoplankton diversity from a community to a genus level. At the current stage of development, however, PH3 acts as a {\textquotedblleft}surveillance{\textquotedblright} rather than an operational indicator since the relationship to GES is not directly tracked. In the future, by additional testing of PH3 and extending the geographical scope, the robustness of the assessment could be further determined across the OSPAR Maritime Area.},
	keywords = {community composition, Good environmental status, Indicators, Marine policy, MSFD, OSPAR, Pelagic habitat, Plankton},
	issn = {1470-160X},
	doi = {https://doi.org/10.1016/j.ecolind.2019.02.009},
	url = {http://www.sciencedirect.com/science/article/pii/S1470160X19301190},
	author = {Rombouts, I. and Nathalie Simon and Anais Aubert and T. Cariou and Eric Feunteun and Laurent Guerin and M. Hoebeke and A. McQuatters-Gollop and F. Rigaut-Jalabert and Luis Felipe Artigas}
}
@article {6579,
	title = {Comparing the efficiency of hypoxia mitigation strategies in an urban, turbid tidal river via a coupled hydro-sedimentary biogeochemical model},
	journal = {Natural Hazards and Earth System Sciences},
	volume = {19},
	year = {2019},
	month = {Jan-01-2019},
	pages = {2551 - 2564},
	doi = {10.5194/nhess-19-2551-2019},
	url = {https://www.nat-hazards-earth-syst-sci.net/19/2551/2019/https://www.nat-hazards-earth-syst-sci.net/19/2551/2019/nhess-19-2551-2019.pdf},
	author = {Lajaunie-Salla, Katixa and Sottolichio, Aldo and Schmidt, Sabine and Litrico, Xavier and Binet, Guillaume and Gwena{\"e}l Abril}
}
@article {6014,
	title = {Contrasting biodiversity of eel larvae across the central Indian Ocean subtropical gyre},
	journal = {Deep Sea Research Part II: Tropical Studies in Oceanography},
	volume = {161},
	year = {2019},
	pages = {120{\textendash}131},
	abstract = {The unique semi-enclosed Indian Ocean basin includes large Mascarene\&nbsp;Plateau\&nbsp;banks, offshore\&nbsp;coral-reef\&nbsp;islands, seasonal equatorial current jets, and cross-basin westward South Equatorial Current (SEC) flow, making it interesting for studying long larval-duration eel larvae (leptocephali) and regional eel biodiversity. Three surveys for\&nbsp;leptocephali\&nbsp;(in 2003, 2006, 2010) included sampling west of the Mascarene Plateau (west), a major survey and other stations off Sumatra and Java (east), and 2 cross-basin transects across the SEC. The highest numbers of leptocephali species were observed along Sumatra (2003: ~143 species; 2006: 72 species) and south of Java (2010: 69), with intermediate numbers being collected in the western Indian Ocean (2006: 71; 2010: 53) compared to low numbers in the hydrographically variable offshore zones (2006, 2010: 3{\textendash}27). The larger\&nbsp;continental shelf\&nbsp;areas along Sumatra including the Mentawai Islands provide more coral reef and other habitats for species such as congrid, muraenid, ophichthid, and chlopsid eels compared to the Mascarene Plateau banks. Some larvae in these areas get transported offshore, but the majority of offshore larvae were of Nemichthyidae and Serrivomeridae mesopelagic eels that were spawning across the basin. Habitat differences between the southern Mascarene Plateau and Sumatra and southern Indonesia along the edge of the high biodiversity Coral Triangle likely explain the higher biodiversity of eel larvae observed along the western side of the basin, which for the Congridae and Ophichthidae included more species than observed previously within the central Indonesian Seas. In addition to local spawning, seasonal currents likely transport larger larvae towards Sumatra from the north or west and larvae may enter the basin from the Indonesian\&nbsp;Throughflow\&nbsp;in the east, but it is unknown if equatorial jets or the SEC can transport larvae across the whole basin.},
	doi = {doi.org/10.1016/j.dsr2.2018.02.012},
	url = {https://www.sciencedirect.com/science/article/pii/S0967064517304393},
	author = {Miller, Michael J and Wouthuyzen, Sam and Eric Feunteun and Aoyama, Jun and Watanabe, Shun and Syahailatua, Augy and Kuroki, Mari and Robinet, Tony and Hagihara, Seishi and Otake, Tsuguo and others}
}
@article {7106,
	title = {Correspondence: An appraisal of the effects on human health and the environment of using light-emitting diodes},
	journal = {Lighting Research \& Technology},
	volume = {51},
	year = {2019},
	month = {Jan-12-2019},
	pages = {1275 - 1276},
	issn = {1477-1535},
	doi = {10.1177/1477153519891878},
	url = {http://journals.sagepub.com/doi/10.1177/1477153519891878},
	author = {Martinsons, Christophe and Attia, Dina and Behar-Cohen, Francine and Carr{\'e}, Samuel and Enouf, Olivier and Jack Falcon and Gronfier, Claude and Hicks, David and Metlaine, Arnaud and Tahkamo, Leena and Torriglia, Alicia and Vi{\'e}not, Fran{\c c}oise}
}
@article {6858,
	title = {decadal scale dynamics and morphological evolution of mangroves and beaches in a reef-lagoon complex, Mayotte island.},
	journal = {Journal of Coastal Research},
	volume = {SI 88},
	year = {2019},
	author = {Jeanson, Matthieu and Franck Dolique and Anthony, Edward J.}
}
@article {6737,
	title = {Distribution of anguillid leptocephali and possible spawning areas in the South Pacific Ocean},
	journal = {Progress in Oceanography},
	volume = {180},
	year = {2019},
	pages = {102234},
	abstract = {Seven South Pacific anguillid eel species live from New Guinea to French Polynesia, but their spawning areas and life histories are mostly unknown despite previous sampling surveys. A July{\textendash}October 2016 research cruise was conducted to study the spawning areas and times, and larval distributions of South Pacific anguillid eels, which included a short 155{\textdegree}E station-line northeast of New Guinea and five long transects (5{\textendash}25{\textdegree}S, 160{\textdegree}E{\textendash}140{\textdegree}W) crossing the South Equatorial (SEC) and other currents. This survey collected nearly 4000 anguilliform leptocephali at 179 stations using an Isaacs-Kidd Midwater Trawl accompanied by 104 CTD casts. Based on morphometric observations and DNA sequencing, 74 anguillid leptocephali were collected, which in the southern areas included 29 larvae of six species: Anguilla bicolor pacifica, A. marmorata, A. australis, A. reinhardtii, A. megastoma,and A. obscura (all anguillid species of the region were caught except A. dieffenbachii). Small A. australis (9.0{\textendash}16.8\&nbsp;mm) and A. reinhardtii (12.4, 12.5\&nbsp;mm) leptocephali were collected south of the Solomon Islands, other A. australis (10.8{\textendash}12.0\&nbsp;mm) larvae were caught northwest of Fiji along with an A. obscura (20.0\&nbsp;mm) larva, and an A. marmorata (7.8\&nbsp;mm) larva was collected near Samoa. Considering collection sites, larval ages from otolith analysis, and westward SEC drift, multiple spawning locations occurred from south of the Solomon Islands and the Fiji area (16{\textendash}20\&nbsp;days old larvae) to near Samoa (19\&nbsp;days old larva) during June and July in areas where high-salinity Subtropical Underwater (STUW, 150\&nbsp;m depth) and the warm, low-salinity surface Fresh Pool were present. Five long hydrographic sections showed the strong Fresh Pool in the west and the STUW formation area in the east.},
	keywords = {Early life history, Freshwater eels, Migration, otolith, South Pacific, Spawning},
	issn = {0079-6611},
	doi = {https://doi.org/10.1016/j.pocean.2019.102234},
	url = {http://www.sciencedirect.com/science/article/pii/S0079661119304148},
	author = {Mari Kuroki and Michael J. Miller and Eric Feunteun and Pierre Sasal and Timothy Pikering and Yu-San Han and Elisabeth Faliex and Anthony Acou and Aur{\'e}lie Dessier and Robert Schabetsberger and Shun Watanabe and Tatsuya Kawakami and Hiroaki Onda and Takatoshi Higuchi and Aya Takeuchi and Madoka Shimizu and Chinthaka A. Hewavitharane and Seishi Hagihara and Terumasa Taka and Shingo Kimura and Noritaka Mochioka and Tsuguo Otake and Katsumi Tsukamoto}
}
@article {Fath20191,
	title = {Ecological network analysis metrics: The need for an entire ecosystem approach in management and policy},
	journal = {Ocean and Coastal Management},
	volume = {174},
	year = {2019},
	note = {cited By 8},
	pages = {1-14},
	publisher = {Elsevier Ltd},
	abstract = {In this paper, we identified seven ecological network analysis (ENA) metrics that, in our opinion, have high potential to provide useful and practical information for environmental decision-makers and stakeholders. Measurement and quantification of the network indicators requires that an ecosystem level assessment is implemented. The ENA metrics convey the status of the ecological system state variables, and mostly, the flows and relations between the various nodes of the network. The seven metrics are: 1) Average Path Length (APL), 2) Finn Cycling Index (FCI), 3) Mean Trophic level (MTL), 4) Detritivory to Herbivory ratio (D:H), 5) Keystoneness, 6) Structural Information (SI), and 7) Flow-based Information indices. The procedure for calculating each metric is detailed along with a short evaluation of their potential assessment of environmental status. {\textcopyright} 2019 Elsevier Ltd},
	keywords = {coastal zone, Cycling, Decision making, ecological approach, Ecological network analysis, ecosystem approach, ecosystem management, Ecosystems, environmental policy, food web, Food webs, Marine and coastal environments, Marine environment, network analysis, policy implementation, stakeholder, Trophic length},
	issn = {09645691},
	doi = {10.1016/j.ocecoaman.2019.03.007},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0964569118305969},
	author = {Fath, B.D. and H Asmus and R. Asmus and Baird, D. and Borrett, S.R. and de Jonge, V.N. and Ludovisi, A. and Nathalie Niquil and Scharler, U.M. and Sch{\"u}ckel, U. and Wolff, M.}
}
@proceedings {6079,
	title = {Ecoregionalisation and conservation of benthic communities in the French exclusive economic zone of Kerguelen},
	volume = {1},
	year = {2019},
	month = {11/06/2019},
	pages = {pp 413},
	publisher = {Australian Antarctic Division},
	edition = {Australian Antarctic Division, Kingston, Tasmania, Australia},
	address = {Kingston, Tasmania, Australia},
	abstract = {<p>The deep-sea benthic ecosystems of the French Kerguelen exclusive economic zone remain poorly understood. To address benthic conservation issues, the authors recently contributed expert knowledge to guide the recent extension of the Marine Reserve of the {\textquoteleft}Terres australes fran{\c c}aises{\textquoteright}. In this new study, we propose a benthic ecoregionalisation of the northern Kerguelen Plateau based on a measurable and repeatable methodology that relies on the generalised dissimilarity modelling technique. Data of macro-epibenthic invertebrate species from the POKER 2 (2010) fish stock assessment survey have been used to compute the models. Our results allow us (i) to characterise and map benthic landscape units based on assemblages of marine invertebrates pooled by taxa and life-history traits, (ii) to highlight the environmental drivers of the spatial distribution of benthic assemblages, (iii) to assess the relevance of the CCAMLR{\textquoteright}s vulnerable marine ecosystems bioindicator taxa, and (iv) to assess the effectiveness of {\textquoteleft}strictly protected areas{\textquoteright} of the new Marine Reserve for the conservation of deep-sea benthic ecosystems.</p>
},
	keywords = {benthic ecosystems, benthos, deep-sea, ecoregionalisation, kerguelen, poker},
	url = {http://heardisland.antarctica.gov.au/__data/assets/pdf_file/0009/229158/34-Martin-FullMS.pdf},
	author = {Martin, Alexis},
	editor = {Trouslard, Emmanuelle and Hautecoeur, M{\'e}lyne and Blettery, Jonathan and Moreau, Camille and Sauc{\`e}de, Thomas and Ameziane, Nadia and Guy Duhamel and Eleaume, Marc}
}
@article {6934,
	title = {Environmental fate of chlordecone in coastal habitats: recent studies conducted in Guadeloupe and Martinique (Lesser Antilles)},
	journal = {Environmental Science and Pollution Research},
	year = {2019},
	month = {Feb-03-2019},
	issn = {0944-1344},
	doi = {10.1007/s11356-019-04661-w},
	url = {http://link.springer.com/10.1007/s11356-019-04661-w},
	author = {Charlotte R. Dromard and Devault, Damien A. and Bouchon-Navaro, Yolande and All{\'e}nou, Jean-Pierre and Budzinski, H{\'e}l{\`e}ne and Cordonnier, S{\'e}bastien and Tapie, Nathalie and Reynal, Lionel and Lemoine, Soazig and Thom{\'e}, Jean-Pierre and Thouard, Emmanuel and Monti, Dominique and Bouchon, Claude}
}
@book {Prouzet201969,
	title = {The European eel (Anguilla anguilla) in France: An example of close cooperation among researchers and fishers to study and manage an endangered species},
	series = {Oceanography Challenges to Future Earth: Human and Natural Impacts on our Seas},
	year = {2019},
	note = {cited By 0},
	pages = {69-93},
	doi = {10.1007/978-3-030-00138-4_7},
	url = {https://www.springerprofessional.de/en/the-european-eel-anguilla-anguilla-in-france-an-example-of-close/16484968},
	author = {Prouzet, P. and Amilhat, E. and Boisneau, C. and Boisneau, P. and Eric Feunteun and Michelet, N.}
}
@article {8554,
	title = {Fine scale geographic residence and annual primary production drive body condition of wild immature green turtles ( <i>Chelonia mydas</i>               ) in Martinique Island (Lesser Antilles)},
	journal = {Biology Open},
	year = {2019},
	month = {Jan-01-2019},
	doi = {10.1242/bio.048058},
	url = {https://journals.biologists.com/bio/article/doi/10.1242/bio.048058/266150/Fine-scale-geographic-residence-and-annual-primary},
	author = {Bonola, Marc and Girondot, Marc and Robin, Jean-Patrice and Martin, Jordan and Siegwalt, Flora and Jeantet, Lor{\`e}ne and Lelong, Pierre and Grand, Cl{\'e}ment and Chambault, Philippine and Etienne, Denis and Gresser, Julie and Hielard, Ga{\"e}lle and Alexandre, Arqu{\'e} and R{\'e}gis, Sidney and Nicolas, Lecerf and Frouin, C{\'e}dric and Lefebvre, Fabien and Sutter, Emmanuel and Vedie, Fabien and Barnerias, Cyrille and Laurent, Thieulle and Bordes, Robinson and Guimera, Christelle and Aubert, Nathalie and Bouaziz, Myriam and Pinson, Adrien and Fr{\'e}d{\'e}ric, Flora and Matthieu, Duru and Benhalilou, Abdelwahab and C{\'e}line, Murgale and Maillet, Thomas and Andreani, Lucas and Campistron, Guilhem and Sikora, Maxym and Rateau, Fabian and Francis, George and Joffrey, Eggenspieler and Woignier, Thierry and All{\'e}nou, Jean-Pierre and Louis-Jean, Laurent and Chanteur, B{\'e}n{\'e}dicte and B{\'e}ranger, Christelle and Crillon, Jessica and Brador, Aude and Habold, Caroline and Le Maho, Yvon and Chevallier, Damien}
}
@article {5844,
	title = {Functional traits unravel temporal changes in fish biomass production on artificial reefs},
	journal = {Marine Environmental Research},
	volume = {145},
	year = {2019},
	pages = {137-146},
	abstract = {<p>Artificial reefs (ARs) are deployed worldwide as they are expected to support fisheries management. While the underlying mechanisms remain widely debated, production was recently determined as the most probable cause of increases in fish biomass. Changes in fish biomass in a temperate AR system were investigated from December 2008 to November 2015 by considering seven distinct functional groups, and isotopic functional indices were used to identify how these changes may have affected organic matter (OM) fluxes. Contrasting patterns of change were observed between functional trophic groups, highlighting that combining the biomass of all species present in a community is inappropriate for assessing AR-induced effects. Benthic sedentary species predominated (\&gt;75\% of the total biomass) through massive production, with a 68-fold increase in mean biomass over the study period. Mobile species tended to vary seasonally, suggesting only a slight influence of AR. Zooplanktivores biomass decreased over the 6-year period, as a possible result of changes in environmental conditions. Isotopic indices helped to reveal both the community maturation and the importance of local OM sources not only in supporting fish biomass production but also in attracting pelagic species. Our results corroborate that production and attraction are two extremes of a range of contrasting patterns and highlight the importance of considering the specific responses of functional components of fish communities to accurately describe changes in AR functioning. Functional attributes such as trophic traits, habitat use and dispersal abilities must not be overlooked as they modulate fish species responses to the deployment of man-made rocky substrates.</p>
},
	keywords = {Artificial reefs, Fish biomass production, Isotopic functional indices, Mediterranean sea},
	issn = {0141-1136},
	doi = {https://doi.org/10.1016/j.marenvres.2019.02.018},
	url = {http://www.sciencedirect.com/science/article/pii/S0141113618307979},
	author = {Cresson, Pierre and Le Direach, Laurence and Rouanet, Elodie and Goberville, Eric and Astruch, Patrick and Ourgaud, M{\'e}lanie and Mireille Harmelin-Vivien}
}
@article {6745,
	title = {High genetic diversity and lack of pronounced population structure in five species of sympatric Pacific eels},
	journal = {Fisheries Management and Ecology},
	volume = {26},
	year = {2019},
	pages = {31-41},
	abstract = {Understanding the population structure of tropical anguillids residing in the Pacific is vital for their conservation management. Here, the population genetic structure of five sympatric freshwater eels (Anguilla marmorata Quoy \&amp; Gaimard, A.\&nbsp;megastoma Kaup, A.\&nbsp;obscura Steindachner, A.\&nbsp;reinhardtii G{\"u}nther and A.\&nbsp;australis Richardson) across 11 western South Pacific (WSP) islands was investigated based on partial nucleotide sequences of the mtDNA control region and the nuclear GTH2b genes of 288 newly collected samples jointly with existing sequences. WSP anguillids are characterised by overall high levels of genetic diversity. Both mtDNA and nuclear sequences provided no evidence for distinct geographic clines or barriers in any of the species across the WSP. The occurrence of admixed individuals between A.\&nbsp;marmorata and A.\&nbsp;megastoma was confirmed, and a new possible occurrence of a further species was revealed (A.\&nbsp;interioris Whitley on Bougainville Island). All species showed evidence for demographic population growth in the Pleistocene, and a subsequent population reduction for A.\&nbsp;megastoma. Common spawning grounds and mixing of larvae by ocean currents could promote the lack of pronounced isolation by distance, a finding that has significant implications for the future management of anguillids in the area.},
	keywords = {genetic homogeneity, hybridisation, recruitment, Spawning, Sympatry, tropical eels},
	doi = {10.1111/fme.12287},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/fme.12287},
	author = {Gubili, Chrysoula and Robert Schabetsberger and Poellabauer, Christine and Bates, Becky and Wagstaff, Rosa M. and Woodward, Lewis M. and Sichrowsky, Ursula and Scheck, Alexander and Boseto, David T. and Eric Feunteun and Anthony Acou and Jehle, Robert}
}
@article {6887,
	title = {High rates of apoptosis visualized in the symbiont-bearing gills of deep-sea Bathymodiolus mussels},
	journal = {PLOS ONE},
	volume = {14},
	year = {2019},
	month = {Apr-02-2019},
	pages = {e0211499},
	doi = {10.1371/journal.pone.021149910.1371},
	url = {http://dx.plos.org/10.1371/journal.pone.0211499},
	author = {Piquet, B{\'e}r{\'e}nice and Bruce Shillito and Lallier, Fran{\c c}ois H. and Duperron, S{\'e}bastien and Andersen, Ann C.},
	editor = {Rodrigues, Clara F.}
}
@article {5861,
	title = {Ideas and perspectives: Carbon leaks from flooded land: do we need to replumb the inland water active pipe?},
	journal = {Biogeosciences},
	volume = {16},
	year = {2019},
	month = {feb},
	pages = {769{\textendash}784},
	doi = {10.5194/bg-16-769-2019},
	url = {https://doi.org/10.5194/bg-16-769-2019},
	author = {Gwena{\"e}l Abril and Alberto V. Borges}
}
@article {5858,
	title = {Importance of the vegetation-groundwater-stream continuum to understand transformation of biogenic carbon in aquatic systems {\textendash} A case study based on a pine-maize comparison in a lowland sandy watershed (Landes de Gascogne, {SW} France)},
	journal = {Science of The Total Environment},
	volume = {661},
	year = {2019},
	month = {apr},
	pages = {613{\textendash}629},
	doi = {10.1016/j.scitotenv.2019.01.152},
	url = {https://doi.org/10.1016/j.scitotenv.2019.01.152},
	author = {Loris Deirmendjian and Pierre Anschutz and Christian Morel and Alain Mollier and Laurent Augusto and Denis Loustau and Luiz Carlos Cotovicz and Damien Buquet and Katixa Lajaunie and Gwena{\"e}lle Chaillou and Baptiste Voltz and C{\'e}line Charbonnier and Dominique Poirier and Gwena{\"e}l Abril}
}
@article {5998,
	title = {In vitro simulation of oscillatory redox conditions in intertidal sediments: N, Mn, Fe, and P coupling},
	journal = {Continental Shelf Research},
	year = {2019},
	author = {Pierre Anschutz and Bouchet, Sylvain and Gwena{\"e}l Abril and Bridou, Romain and Tessier, Emmanuel and Amouroux, David}
}
@article {6888,
	title = {Is It First the Egg or the Shrimp? {\textendash} Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development},
	journal = {Frontiers in Microbiology},
	volume = {10},
	year = {2019},
	month = {May-04-2020},
	doi = {10.3389/fmicb.2019.00808},
	url = {https://www.frontiersin.org/article/10.3389/fmicb.2019.00808/full},
	author = {Methou, Pierre and Hern{\'a}ndez-{\'A}vila, Ivan and Aube, Johanne and Cueff-Gauchard, Val{\'e}rie and Gayet, Nicolas and Amand, Louis and Bruce Shillito and Pradillon, Florence and Cambon-Bonavita, Marie-Anne}
}
@article {6626,
	title = {K092A and K092B, Two Peptides Isolated from the Dogfish (Scyliorhinus canicula L.), with Potential Antineoplastic Activity Against Human Prostate and Breast Cancer Cells},
	journal = {Marine Drugs},
	volume = {17},
	year = {2019},
	month = {Jan-12-2019},
	pages = {672},
	doi = {10.3390/md17120672},
	url = {https://www.mdpi.com/1660-3397/17/12/672},
	author = {Bosseboeuf, Adrien and Baron, Amandine and Duval, Elise and Aude Gautier and Pascal Sourdaine and Auvray, Pierr{\"\i}ck}
}
@article {8114,
	title = {Low-diversity bacterial microbiota in Southern Ocean representatives of lanternfish genera Electrona, Protomyctophum and Gymnoscopelus (family Myctophidae)},
	journal = {PLOS ONE},
	volume = {14},
	year = {2019},
	month = {Nov-12-2019},
	pages = {e0226159},
	doi = {10.1371/journal.pone.0226159},
	url = {https://dx.plos.org/10.1371/journal.pone.0226159},
	author = {Gallet, Alison and Koubbi, Philippe and L{\'e}ger, Nelly and Scheifler, Mathilde and Ruiz-Rodriguez, Magdalena and Suzuki, Marcelino T. and Desdevises, Yves and Duperron, S{\'e}bastien},
	editor = {Achal, Varenyam}
}
@article {6805,
	title = {Modern drought conditions in western Sahel unprecedented in the past 1600~years},
	journal = {Climate Dynamics},
	volume = {52},
	year = {2019},
	month = {Jan-02-2019},
	pages = {1949 - 1964},
	abstract = {As climate model uncertainties remain very large for future rainfall in the Sahel, a multi-centennial perspective is required to assess the situation of current Sahel climate in the context of global warming. We present here the first record of hydroclimatic variability over the past 1600\&nbsp;years in Senegal, obtained from stable oxygen isotope analyses (δ18O) in archaeological shell middens from the Saloum Delta. During the preindustrial period, the region was relatively humid, with maximum humidity reached during the period from AD 1500 to AD 1800, referred to as the Little Ice Age. A significant negative link is observed at the centennial scale between global temperature and humidity in the Sahel that is at odds with the expected effects of latitudinal shifts of the intertropical convergence zone during the last millennium. In the context of the past 1600\&nbsp;years, the Western Sahel appears to be experiencing today unprecedented drought conditions. The rapid aridification that started ca. AD 1800 and the recent emergence of Sahel drought from the natural variability point to an anthropogenic forcing of Sahel drying trend. This new long-term perspective suggests that the recovery of Sahel rainfall in the last decade may only result from short-term internal variability, and supports climate models that predict an increase of Sahel drought under future greenhouse climate.},
	issn = {0930-7575},
	doi = {10.1007/s00382-018-4311-3},
	url = {https://hal.archives-ouvertes.fr/hal-02349321},
	author = {Carr{\'e}, Matthieu and Azzoug, Moufok and Zaharias, Paul and Camara, Abdoulaye and Cheddadi, Rachid and Chevalier, Manuel and Fiorillo, Denis and Gaye, Amadou T. and Janicot, Serge and Khodri, Myriam and Lazar, Alban and Claire E. Lazareth and Mignot, Juliette and Mitma Garc{\'\i}a, Nancy and Patris, Nicolas and Perrot, Oc{\'e}ane and Wade, Malick}
}
@article {5782,
	title = {Molecular evolution and functional characterisation of insulin related peptides in molluscs: Contributions of Crassostrea gigas genomic and transcriptomic-wide screening},
	journal = {Journal of Comparative Endocrinology},
	volume = {271},
	year = {2019},
	pages = {15-29},
	type = {research},
	abstract = {<p>Insulin Related Peptides (IRPs) belong to the insulin superfamily and possess a typical structure with two chains,<br />
B and A, linked by disulphide bonds. As the sequence conservation is usually low between members, IRPs are<br />
classified according to the number and position of their disulphide bonds. In molluscan species, the first IRPs<br />
identified, named Molluscan Insulin-related Peptides (MIPs), exhibit four disulphide bonds. The genomic and<br />
transcriptomic data screening in the Pacific oyster Crassostrea gigas (Mollusc, Bivalvia) allowed us to identify six<br />
IRP sequences belonging to three structural groups. Cg-MIP1 to 4 have the typical structure of MIPs with four<br />
disulphide bonds. Cg-ILP has three disulphide bonds like vertebrate Insulin-Like Peptides (ILPs). The last one,<br />
Cg-MILP7 has a significant homology with Drosophila ILP7 (DILP7) associated with two additional cysteines<br />
allowing the formation of a fourth disulphide bond. The phylogenetic analysis points out that ILPs may be the<br />
most ancestral form. Moreover, it appears that ILP7 orthologs are probably anterior to lophotrochozoa and<br />
ecdysozoa segregation. In order to investigate the diversity of physiological functions of the oyster IRPs, we<br />
combine in silico expression data, qPCR measurements and in situ hybridization. The Cg-ilp transcript, mainly<br />
detected in the digestive gland and in the gonadal area, is potentially involved in the control of digestion and<br />
gametogenesis. The expression of Cg-mip4 is mainly associated with the larval development. The Cg-mip<br />
transcript shared by the Cg-MIP1, 2 and 3, is mainly expressed in visceral ganglia but its expression was also<br />
observed in the gonads of mature males. This pattern suggested the key roles of IRPs in the control of sexual<br />
reproduction in molluscan species.</p>
},
	author = {Ma{\"e}va Cherif{\textendash}Feildel and Clothilde Berthelin and B{\'e}atrice Adeline and Guillaume Rivi{\`e}re and Pascal Favrel and Kristell Kellner-Cousin}
}
@article {8135,
	title = {Morphological and molecular criteria allow the identification of putative germ stem cells in a lophotrochozoan, the Pacific oyster Crassostrea gigas},
	journal = {Histochemistry and Cell Biology},
	volume = {151},
	year = {2019},
	month = {Jan-05-2019},
	pages = {419 - 433},
	issn = {0948-6143},
	doi = {10.1007/s00418-018-1740-3},
	url = {http://link.springer.com/10.1007/s00418-018-1740-3},
	author = {Cherif-Feildel, Ma{\"e}va and Kellner, Kristell and Goux, Didier and Elie, Nicolas and Adeline, B{\'e}atrice and Lelong, Christophe and Clothilde Berthelin}
}
@article {6043,
	title = {A new species of Sicyopus (Teleostei: Gobiidae) from New Britain (Papua New Guinea)},
	journal = {Cybium},
	volume = {43},
	year = {2019},
	pages = {163-167},
	abstract = {<p class="rtejustify">A new species of <em>Sicyopus</em>, a sicydiine goby, is described from specimens collected in streams of New Britain (Papua New Guinea). It differs from other species of this amphidromous genus by a combination of characters including a second dorsal fin with one spine and ten segmented rays, fewer scales in lateral series and transverse back series, and smaller predorsal and caudal peduncle lengths.</p>
},
	keywords = {Freshwater, Gobiidae, New Britain, New species, Papua New Guinea, Sicyopus},
	author = {Philippe Keith and Pita Amick and Toko P. and Clara Lord}
}
@article {6664,
	title = {Patterns of at-sea behaviour at a hybrid zone between two threatened seabirds},
	journal = {Scientific Reports},
	volume = {9},
	year = {2019},
	month = {Jan-12-2019},
	doi = {10.1038/s41598-019-51188-8},
	url = {http://www.nature.com/articles/s41598-019-51188-8},
	author = {Austin, Rhiannon E. and Wynn, Russell B. and Votier, Stephen C. and Trueman, Clive and McMinn, Miguel and Rodr{\'\i}guez, Ana and Suberg, Lavinia and Maurice, Louise and Newton, Jason and Genovart, Meritxell and Clara P{\'e}ron and Gr{\'e}millet, David and Guilford, Tim}
}
@article {6041,
	title = {Phylog{\'e}ographie de Neritina stumpffi Boettger, 1890 et Neritina canalis Sowerby, 1825 (Gastropoda, Cycloneritida, Neritidae)},
	journal = {Zoosystema},
	volume = {41},
	year = {2019},
	pages = {237-248},
	abstract = {<p class="rtejustify">The population genetic structure of <em>Neritina stumpffi</em> Boettger, 1890 in the Indo-Pacific and <em>Neritina canalis</em> Sowerby, 1825 in the Pacific Ocean were investigated using a fragment of the mitochondrial COI gene. The haplotype network of <em>N. stumpffi</em> showed a genetic structuration between the two oceans, with shared haplotypes. Concerning <em>N. canalis</em>, western Pacific and central Pacific populations are genetically structured, without shared haplotypes. The Coral Triangle appears to have played a filtering barrier role for <em>N. stumpffi</em>, whose presence in both oceans could be explained by the flow of the south-equatorial current. A barrier to the dispersal of <em>N. canalis</em> between the western and the central Pacific may also exist.</p>
},
	keywords = {COI gene, Indian Ocean, larval dispersion, Pacific Ocean, Phylogeography},
	author = {Ahmed Abdou and Clara Lord and Philippe Keith and Ren{\'e} Galzin}
}
@article {6635,
	title = {A Potential Antineoplastic Peptide of Human Prostate Cancer Cells Derived from the Lesser Spotted Dogfish (Scyliorhinus canicula L.)},
	journal = {Marine Drugs},
	volume = {17},
	year = {2019},
	month = {Jan-10-2019},
	pages = {585},
	doi = {10.3390/md17100585},
	url = {https://www.mdpi.com/1660-3397/17/10/585},
	author = {Bosseboeuf, Adrien and Baron, Amandine and Duval, Elise and Aude Gautier and Pascal Sourdaine and Auvray, Pierr{\"\i}ck}
}
@article {5833,
	title = {{Prediction of unprecedented biological shifts in the global ocean}},
	journal = {Nature Climate Change},
	volume = {9},
	year = {2019},
	month = {mar},
	pages = {237{\textendash}243},
	abstract = {<p>Impermanence is an ecological principle<sup>1</sup> but there are times when changes occur nonlinearly as abrupt community shifts (ACSs) that transform the ecosystem state and the goods and services it provides<sup>2</sup>. Here, we present a model based on niche theory<sup>3</sup> to explain and predict ACSs at the global scale. We test our model using 14 multi-decadal time series of marine metazoans from zooplankton to fish, spanning all latitudes and the shelf to the open ocean. Predicted and observed fluctuations correspond, with both identifying ACSs at the end of the 1980s<sup>4,5,6,7</sup> and 1990s<sup>5,8</sup>. We show that these ACSs coincide with changes in climate that alter local thermal regimes, which in turn interact with the thermal niche of species to trigger long-term and sometimes abrupt shifts at the community level. A large-scale ACS is predicted after 2014{\textemdash}unprecedented in magnitude and extent{\textemdash}coinciding with a strong El Ni{\~n}o event and major shifts in Northern Hemisphere climate. Our results underline the sensitivity of the Arctic Ocean, where unprecedented melting may reorganize biological communities<sup>5,9</sup>, and suggest an increase in the size and consequences of ACS events in a warming world.</p>
},
	issn = {1758-678X},
	doi = {10.1038/s41558-019-0420-1},
	url = {http://www.nature.com/articles/s41558-019-0420-1},
	author = {Gr{\'e}gory Beaugrand and Alessandra Conversi and Angus Atkinson and Jim E. Cloern and Sanae Chiba and Serena Fonda-Umani and Richard R Kirby and Greene, C. H. and Goberville, Eric and Otto, S. A. and Philip Chris Reid and Stemmann, L. and Martin Edwards}
}
@article {6884,
	title = {Protein expression profiles in Bathymodiolus azoricus exposed to cadmium},
	journal = {Ecotoxicology and Environmental Safety},
	volume = {171},
	year = {2019},
	month = {Jan-04-2019},
	pages = {621 - 630},
	issn = {01476513},
	doi = {10.1016/j.ecoenv.2019.01.031},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0147651319300399},
	author = {Company, Rui and Ant{\'u}nez, Oreto and Cosson, Richard P. and Serafim, Angela and Bruce Shillito and Cajaraville, Miren and Bebianno, Maria Jo{\~a}o and Torreblanca, Amparo}
}
@article {5868,
	title = {Sources and sinks of dissolved inorganic carbon in an urban tropical coastal bay revealed by δ13C-DIC signals},
	journal = {Estuarine, Coastal and Shelf Science},
	year = {2019},
	author = {L.C. CotoviczJr and Knoppers, Bastiaan A and Deirmendjian, Loris and Gwena{\"e}l Abril}
}
@article {6662,
	title = {Temperature patterns and mechanisms influencing coral bleaching during the 2016 El Ni{\~n}o},
	journal = {Nature Climate Change},
	volume = {9},
	year = {2019},
	pages = {845-851},
	abstract = {Under extreme heat stress, corals expel their symbiotic algae and colour (that is, {\textquoteleft}bleaching{\textquoteright}), which often leads to widespread mortality. Predicting the large-scale environmental conditions that reinforce or mitigate coral bleaching remains unresolved and limits strategic conservation actions1,2. Here we assessed coral bleaching at 226 sites and 26 environmental variables that represent different mechanisms of stress responses from East Africa to Fiji through a coordinated effort to evaluate the coral response to the 2014{\textendash}2016 El Ni{\~n}o/Southern Oscillation thermal anomaly. We applied common time-series methods to study the temporal patterning of acute thermal stress and evaluated the effectiveness of conventional and new sea surface temperature metrics and mechanisms in predicting bleaching severity. The best models indicated the importance of peak hot temperatures, the duration of cool temperatures and temperature bimodality, which explained 50\% of the variance, compared to the common degree-heating week temperature index that explained only 9\%. Our findings suggest that the threshold concept as a mechanism to explain bleaching alone was not as powerful as the multidimensional interactions of stresses, which include the duration and temporal patterning of hot and cold temperature extremes relative to average local conditions. {\textcopyright} 2019, The Author(s), under exclusive licence to Springer Nature Limited.},
	keywords = {Algae, Anthozoa},
	issn = {1758678X},
	doi = {10.1038/s41558-019-0576-8},
	url = {https://www.nature.com/articles/s41558-019-0576-8},
	author = {McClanahan, T.R. and Darling, E.S. and Maina, J.M. and Muthiga, N.A. and D{\textquoteright}agata, S. and Jupiter, S.D. and Arthur, R. and Wilson, S.K. and Mangubhai, S. and Nand, Y. and Ussi, A.M. and Humphries, A.T. and Patankar, V.J. and Mireille M.M. Guillaume and Philippe Keith and Shedrawi, G. and Julius, P. and Grimsditch, G. and Ndagala, J. and Leblond, J.}
}
@article {6470,
	title = {Tissue-Specific Biomarker Responses in the Blue Mussel Mytilus spp. Exposed to a Mixture of Microplastics at Environmentally Relevant Concentrations},
	journal = {Frontiers in Environmental Science},
	volume = {7},
	year = {2019},
	month = {Sep-03-2020},
	abstract = {The impact of a microplastic (MP) mixture composed of polyethylene (PE) and polypropylene (PP) plastic particles, prepared from commercially available products, was evaluated in blue mussels Mytilus spp. exposed to three environmentally relevant concentrations: 0.008 μg L-1 (low), 10 μg L-1 (medium), and 100 μg L-1 (high). Organisms were exposed for 10 days followed by 10 days of depuration in clean seawater under controlled laboratory conditions. The evaluation of MP effects on mussel clearance rate, tissue structure, antioxidant defenses, immune and digestive parameters, and DNA integrity were investigated while the identification of plastic particles in mussel tissues (gills, digestive gland, and remaining tissues), and biodeposits (feces and pseudofaeces) was performed using infrared microscopy (μFT-IR). Results showed the presence of MPs only in the digestive gland of mussels exposed to the highest tested concentration of MPs with a mean of 0.75 particle/mussel (after the 10 days of exposure). In biodeposits, PE and PP particles were detected following exposure to all tested concentrations confirming the ingestion of MPs by the organisms. A differential response of antioxidant enzyme activities between digestive gland and gills was observed. Significant increases in superoxide dismutase (SOD) and catalase (CAT) activities were measured in the digestive gland of mussels exposed to the low (0.008 μg L-1) and medium (10 μg L-1) concentrations ofMPs and in the gills frommussels exposed to the highest concentration (100 μg L-1) of MPs that could be indicative of a change in the redox balance. Moreover, an increase in acid phosphatase activity was measured in hemolymph of mussels exposed to 0.008 and 10 μg L-1 concentrations. No significant difference was observed in the clearance rate, and histopathological parameters between control and exposed mussels. This study brings new insights on the potential sublethal impacts of MPs at environmentally relevant concentrations in marine bivalves.},
	keywords = {biomarkers, microplastics, Mytilus, oxidative stress, polyethylene, polypropylene},
	doi = {10.3389/fenvs.2019.00033},
	url = {https://www.frontiersin.org/article/10.3389/fenvs.2019.00033},
	author = {Revel, Messika and Lagarde, Fabienne and Perrein-Ettajani, Hanane and Bruneau, M{\'e}lanie and Akcha, Farida and Sussarellu, Rossana and Rouxel, Julien and Katherine Costil and Decottignies, Priscilla and Cognie, Bruno and Ch{\^a}tel, Am{\'e}lie and Mouneyrac, Catherine}
}
@article {Arroyo20191543,
	title = {Towards coherent GES assessments at sub-regional level: Signs of fisheries expansion processes in the Bay of Biscay using an OSPAR food web indicator, the mean trophic level},
	journal = {ICES Journal of Marine Science},
	volume = {76},
	number = {6},
	year = {2019},
	note = {cited By 1},
	pages = {1543-1553},
	publisher = {Oxford University Press},
	abstract = {Using the Bay of Biscay (BoB) as a case study, we conducted a transnational assessment of the mean trophic level (MTL, Ospar FW4) indicator at sub-regional level, over the last three decades. Our results confirm the apparent recovery of BoB{\textquoteright}s bentho-demersal system, as shown by trends in the MTL indicator based on survey data. However, they also point at a concomitant "fishing through" process where the apparent stability revealed by the MTL indicator based on landed catch data may be masking the expansion of demersal fisheries to deeper waters, and an over-exploitation of resources (particularly abundant pelagic species). Moreover, they show how the combined examination of independent surveys and fishery landings allows the identification of ecological trends in ecosystem studies. In addition, our results confirm that analysing MTL at various threshold levels helps discerning the causality of trends in this indicator, especially if analyses for pelagic and demersal species are run independently. Further studies, at smaller (i.e. local) spatial scales, need to be conducted to ascertain our results and suggest appropriate management strategies aimed at regulating fisheries expansions in the area. {\textcopyright} 2019 International Council for the Exploration of the Sea 2019. All rights reserved.},
	keywords = {Atlantic Ocean, Bay of Biscay, catch statistics, demersal fishery, food web, pelagic fishery, range expansion, trophic level, trophic status},
	issn = {10543139},
	doi = {10.1093/icesjms/fsz023},
	url = {https://academic.oup.com/icesjms/article-abstract/76/6/1543/5369193},
	author = {Arroyo, N.-L. and Safi, Georges and Vouriot, P. and L{\'o}pez-L{\'o}pez, L. and Nathalie Niquil and Le Loc{\textquoteright}h, Francois and Hattab, Tarek and Preciado, I and Coll, M.}
}
@article {5860,
	title = {The transformation of macrophyte-derived organic matter to methane relates to plant water and nutrient contents},
	journal = {Limnology and Oceanography},
	year = {2019},
	month = {mar},
	doi = {10.1002/lno.11148},
	url = {https://doi.org/10.1002/lno.11148},
	author = {Charlotte Grasset and Gwena{\"e}l Abril and Raquel Mendon{\c c}a and Fabio Roland and Sebastian Sobek}
}
@article {vanderHeijden201950,
	title = {Trophic importance of microphytobenthos and bacteria to meiofauna in soft-bottom intertidal habitats: A combined trophic marker approach},
	journal = {Marine Environmental Research},
	volume = {149},
	year = {2019},
	note = {cited By 2},
	pages = {50-66},
	publisher = {Elsevier Ltd},
	abstract = {Meiofauna can play an important role in the carbon fluxes of soft-bottom coastal habitats. Investigation of their feeding behavior and trophic position remains challenging due to their small size. In this study, we determine and compare the food sources used by nematodes and benthic copepods by using stable isotope compositions, fatty acid profiles and compound specific isotope analyses of fatty acids in the mudflats, seagrass beds and a sandflat of the Marennes-Ol{\'e}ron Bay, France, and the Sylt-R{\o}m{\o} Bight, Germany. Suspended particulate organic matter was much more 13C-depleted than other food sources and meiofauna, highlighting its poor role in the different studied habitats. The very low proportions of vascular plant fatty acid markers in meiofauna demonstrated that these consumers did not rely on this food source, either fresh or detrital, even in seagrass beds. The combined use of stable isotopes and fatty acids emphasized microphytobenthos and benthic bacteria as the major food sources of nematodes and benthic copepods. Compound specific analyses of a bacteria marker confirmed that bacteria mostly used microphytobenthos as a substrate. {\textcopyright} 2019 Elsevier Ltd},
	keywords = {Article, Bacillariophyta, bacteria, bacterium, Benthic copepods, Benthic diatoms, Biological materials, biomarker, Biomass, carbon 13, coastal zone, controlled study, Copepoda, delta carbon 13, delta nitrogen 15, Diatom, Ecosystems, fatty acids, Feeding Behavior, food supply, France, Free livings, Freeze Drying, Frisian Islands, Germany, high performance liquid chromatography, intertidal environment, isotope analysis, Isotopes, lipid composition, Marennes-Oleron Bay, Meiofauna, microbial activity, Microphytobenthos, mudflat, Mudflats, Nematoda, nitrogen 15, nonhuman, North Frisian Islands, Nouvelle-Aquitaine, Organic matter, Phytobenthos, Plants (botany), Sandflats, seagrass, Seagrass beds, Sediment, soft-bottom environment, species habitat, substrate, suspended particulate organic matter, Sylt-Romo Bight, trophic environment, Trophic markers, Trophic structure, unclassified drug},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2019.05.014},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0141113618304744},
	author = {van der Heijden, L.H. and Graeve, M. and R. Asmus and Rzeznik-Orignac, J. and Nathalie Niquil and Bernier, Q. and Guillou, G. and H Asmus and Lebreton, B.}
}
@article {Safi2019116,
	title = {Vitamine ENA: A framework for the development of ecosystem-based indicators for decision makers},
	journal = {Ocean and Coastal Management},
	volume = {174},
	year = {2019},
	note = {cited By 5},
	pages = {116-130},
	publisher = {Elsevier Ltd},
	abstract = {The Water Framework Directive (article 2, paragraph 21) as well as the Marine Strategy Framework Directive (MSFD, Descriptor 4) stress the need for assessing the quality of the structure and the functioning of ecosystems. The MSFD also underlines the urgent need for development, testing, and validation of ecosystem state indicators. Holistic function-based criteria and indicators as provided by Ecological Network Analysis (ENA) could be used to define and assess the {\textquoteleft}Good Environmental Status{\textquoteright} of marine ecosystems. This approach also feeds Ecosystem Based Management (EBM). ENA generally analyses the fluxes{\textquoteright} quality of a single medium such as here the carbon fluxes in a food web and produces a number of useful metrics that indicate, inter alia, the total carbon flow through the system, the quality of the functioning of the system or the trophic efficiency of system. A short list of indices [i.e. Detritivory over Herbivory ratio (D/H), Connectance Index (CI), Transfer Efficiency (TE) over trophic levels, System Omnivory Index (SOI), Finn{\textquoteright}s Cycling Index (FCI), relative Redundancy (R/DC), Average Mutual Information (AMI) and Interaction Strength (IS)] is proposed for practical use. This paper presents a first framework for OSPAR Regional Sea Convention food web indicators based on ENA. These are presented here focusing on their applicability and what is needed for implementation, illustrating their potential use by case studies. {\textcopyright} 2019 Elsevier Ltd},
	keywords = {Average mutual information, Carbon, Carbon flux, Criteria and indicators, Decision making, Ecological network analysis, ecosystem function, ecosystem management, ecosystem structure, Ecosystem-based management, Ecosystems, Efficiency, environmental indicator, Environmental management, Environmental regulations, food web, Good environmental status, holistic approach, Interaction strength, marine ecosystem, Marine pollution, Marine strategy framework directives, Water conservation, Water Framework Directives},
	issn = {09645691},
	doi = {10.1016/j.ocecoaman.2019.03.005},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S096456911830591X},
	author = {Safi, Georges and Giebels, D. and Arroyo, N.-L. and Heymans, J.J. and Preciado, I and Raoux, Aurore and Sch{\"u}ckel, U. and Samuele Tecchio and de Jonge, V.N. and Nathalie Niquil}
}
@article {5630,
	title = {Age and growth of the Amazonian migratory catfish Brachyplatystoma rousseauxii in the Madeira River basin before the construction of dams},
	journal = {Neotropical Ichthyology},
	volume = {16},
	year = {2018},
	pages = {e170130, 2018},
	abstract = {<p class="rtejustify">The goliath catfish <em>Brachyplatystoma rousseauxii</em> has crucial economical and ecological functions in the Amazon basin. Although its life history characteristics have been studied in the Amazon, there is little information in the Madeira River basin, which holds genetically distinct populations and where dams were recently built. Using fish collected in Bolivia, Brazil and Peru, this study provides a validation of growth rings deposition and details the growth patterns of <em>B. rousseauxii</em> in the Madeira before the dams{\textquoteright} construction. Age structure and growth parameters were determined from 497 otolith readings. The species exhibits two growth rings per year and sampled fish were between 0 and 16 years old. In the Brazilian portion of the basin, mainly young individuals below 5 years old were found, whereas older fish (\&gt; 5 years) were caught only in the Bolivian and Peruvian stretches, indicating that after migrating upstream to reproduce, adults remain in the headwaters of the Madeira River. Comparing with previous publications, <em>B. rousseauxii</em> had a slower growth and 20 cm lower maximum standard length in the Madeira River than in the Amazon River. This study provides a baseline for future evaluation of changes in population dynamics of the species following dams closure.</p>

<p class="rtejustify">Palabras clave:\&nbsp;Amazon; Biannual rings; Goliath catfish; Life cycle; Otolith</p>
},
	doi = {10.1590/1982-0224-20170130},
	author = {Hauser, Marilia and Doria, C R C and Melo, L and Santos, A and Ayala, D and Nogueira, L and Amadio, S. A. and Fabr{\'e}, N and Torrente-Vilara, Gislene and Garc{\'\i}a V{\'a}squez, A and Renno, Jean-Francois and Carvajal-Vallejos, F M and Alonso, J-C and N{\'u}{\~n}ez-Rodr{\'\i}guez, Jes{\'u}s and Fabrice Duponchelle}
}
@article {5754,
	title = {Algal Bloom Exacerbates Hydrogen Sulfide and Methylmercury Contamination in the Emblematic High-Altitude Lake Titicaca},
	journal = {Geosciences},
	volume = {8},
	year = {2018},
	abstract = {<p>Algal blooms occurrence is increasing around the globe. However, algal blooms are uncommon in dominantly oligotrophic high-altitude lakes. Lake Titicaca, the largest freshwater lake in South America, located at 3809 m above the sea level, experienced its first recorded algal bloom covering a large fraction of its southern shallow basin in March{\textendash}April 2015. The dominant algae involved in the bloom was Carteria sp. Water geochemistry changed during the bloom with a simultaneous alkalinization in heterotrophic parts of the lake and acidification in eutrophic shallow areas. A decrease in oxygen saturation (from 105 to 51\%), and a dramatic increase in hydrogen sulfide (H2S) concentrations (from \&lt;0.02 to up to 155 {\textmu}g.L-1) resulted in the massive death of pelagic organisms. Such changes were brought by the exacerbated activity of sulfate-reducing bacteria (SRB) in this sulfate-rich lake. Although levels in total mercury remained stable during the event, MMHg \% rose, highlighting higher conservation of produced MMHg in the water. Such an increase on MMHg \% has the potential to produce exponential changes on MMHg concentrations at the end food web due to the biomagnification process. Our physicochemical and climatological data suggest that unusually intense rain events released large amounts of nutrients from the watershed and triggered the bloom. The observed bloom offers a hint for possible scenarios for the lake if pollution and climate change continue to follow the same trend. Such a scenario may have significant impacts on the most valuable fish source in the Andean region and the largest freshwater Lake in South America. Furthermore, the event illustrates a possible fate of high altitude environments subjected to eutrophication.</p>
},
	issn = {2076-3263},
	doi = {10.3390/geosciences8120438},
	url = {http://www.mdpi.com/2076-3263/8/12/438},
	author = {Dar{\'\i}o Ach{\'a} and Gu{\'e}dron, Stephane and Amouroux, David and Point, David and Lazzaro, Xavier and Fernandez, Pablo Edgar and Sarret, G{\'e}raldine}
}
@article {5918,
	title = {Aragonite saturation state in a tropical coastal embayment dominated by phytoplankton blooms (Guanabara Bay - Brazil)},
	journal = {Marine Pollution Bulletin},
	volume = {129},
	year = {2018},
	pages = {729{\textendash}739},
	doi = {10.1016/j.marpolbul.2017.10.064},
	url = {https://doi.org/10.1016/j.marpolbul.2017.10.064},
	author = {Luiz C. Cotovicz and Bastiaan A. Knoppers and Nilva Brandini and Dominique Poirier and Suzan J. Costa Santos and Gwena{\"e}l Abril}
}
@article {5920,
	title = {Carbon dioxide degassing at the groundwater-stream-atmosphere interface: isotopic equilibration and hydrological mass balance in a sandy watershed},
	journal = {Journal of Hydrology},
	volume = {558},
	year = {2018},
	pages = {129{\textendash}143},
	doi = {10.1016/j.jhydrol.2018.01.003},
	url = {https://doi.org/10.1016/j.jhydrol.2018.01.003},
	author = {Loris Deirmendjian and Gwena{\"e}l Abril}
}
@article {5920,
	title = {Carbon dioxide degassing at the groundwater-stream-atmosphere interface: isotopic equilibration and hydrological mass balance in a sandy watershed},
	journal = {Journal of Hydrology},
	volume = {558},
	year = {2018},
	pages = {129{\textendash}143},
	doi = {10.1016/j.jhydrol.2018.01.003},
	url = {https://doi.org/10.1016/j.jhydrol.2018.01.003},
	author = {Loris Deirmendjian and Gwena{\"e}l Abril}
}
@article {5917,
	title = {Carbon dynamics and CO2 and CH4 outgassing in the Mekong delta},
	journal = {Biogeosciences},
	volume = {15},
	year = {2018},
	pages = {1093{\textendash}1114},
	doi = {10.5194/bg-15-1093-2018},
	url = {https://doi.org/10.5194/bg-15-1093-2018},
	author = {Alberto V. Borges and Gwena{\"e}l Abril and Steven Bouillon}
}
@article {8557,
	title = {Connecting paths between juvenile and adult habitats in the Atlantic green turtle using genetics and satellite tracking},
	journal = {Ecology and Evolution},
	volume = {8},
	year = {2018},
	month = {Jan-12-2018},
	pages = {12790 - 12802},
	issn = {2045-7758},
	doi = {10.1002/ece3.2018.8.issue-2410.1002/ece3.4708},
	url = {https://onlinelibrary.wiley.com/toc/20457758/8/24},
	author = {Chambault, Philippine and de Thoisy, Beno{\^\i}t and Huguin, Ma{\"\i}lis and Martin, Jordan and Bonola, Marc and Etienne, Denis and Gresser, Julie and Hielard, Ga{\"e}lle and Mailles, Julien and Vedie, Fabien and Barnerias, Cyrille and Sutter, Emmanuel and Guillemot, Blandine and Dumont-Dayot, {\'E}milie and R{\'e}gis, Sidney and Lecerf, Nicolas and Lefebvre, Fabien and Frouin, C{\'e}dric and Aubert, Nathalie and Guimera, Christelle and Bordes, Robinson and Thieulle, Laurent and Duru, Matthieu and Bouaziz, Myriam and Pinson, Adrien and Flora, Fr{\'e}d{\'e}ric and Queneherve, Patrick and Woignier, Thierry and Allenou, Jean-Pierre and Cimiterra, Nicolas and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Maillet, Thomas and Rangon, Luc and Chanteux, No{\'e}mie and Chanteur, B{\'e}n{\'e}dicte and B{\'e}ranger, Christelle and Le Maho, Yvon and Petit, Odile and Chevallier, Damien}
}
@article {8113,
	title = {Cryptic frenulates are the dominant chemosymbiotrophic fauna at Arctic and high latitude Atlantic cold seeps},
	journal = {PLOS ONE},
	volume = {13},
	year = {2018},
	month = {Apr-12-2020},
	pages = {e0209273},
	doi = {10.1371/journal.pone.0209273},
	url = {https://dx.plos.org/10.1371/journal.pone.0209273},
	author = {Sen, Arunima and Duperron, S{\'e}bastien and Hourdez, St{\'e}phane and Piquet, B{\'e}r{\'e}nice and L{\'e}ger, Nelly and Gebruk, Andrey and Le Port, Anne-Sophie and Svenning, Mette Marianne and Andersen, Ann C.},
	editor = {Kiel, Steffen}
}
@article {5025,
	title = {Diel Rhythm Does Not Shape the Vertical Distribution of Bacterial and Archaeal 16S rRNA Transcript Diversity in Intertidal Sediments: a Mesocosm Study},
	journal = {Microbial Ecology},
	volume = {75},
	year = {2018},
	month = {Aug},
	pages = {364-374.},
	abstract = {<p class="rtejustify">In intertidal sediments, circadian oscillations (i.e., tidal and diel rhythms) and/or depth may affect prokaryotic activity. However, it is difficult to distinguish the effect of each single force on active community changes in these natural and complex intertidal ecosystems. Therefore, we developed a tidal mesocosm to control the tidal rhythm and test whether diel fluctuation or sediment depth influence active prokaryotes in the top 10\&nbsp;cm of sediment. Day- and nighttime emersions were compared as they are expected to display contrasting conditions through microphytobenthic activity in five different sediment layers. A multiple factor analysis revealed that bacterial and archaeal 16S ribosomal RNA (rRNA) transcript diversity assessed by pyrosequencing was similar between day and night emersions. Potentially active benthic Bacteria were highly diverse and influenced by chlorophyll a and phosphate concentrations. While in oxic and suboxic sediments, Thaumarchaeota Marine Group I (MGI) was the most active archaeal phylum, suggesting the importance of the nitrogen cycle in muddy sediments, in anoxic sediments, the mysterious archaeal C3 group dominated the community. This work highlighted that active prokaryotes organize themselves vertically within sediments independently of diel fluctuations suggesting adaptation to physicochemical-specific conditions associated with sediment depth.</p>
},
	issn = {1432-184X},
	doi = {10.1007/s00248-017-1048-1},
	url = {https://doi.org/10.1007/s00248-017-1048-1},
	author = {Lavergne, C. and Hugoni, M. and C{\'e}dric Hubas and Debroas, D. and Christine Dupuy and Agogu{\'e}, H.}
}
@article {5499,
	title = {Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets},
	journal = {BMC Genomics},
	volume = {19},
	year = {2018},
	abstract = {<p class="rtejustify">Aquaculture production is expected to double by 2030, and demands for aquafeeds and raw materials are expected to increase accordingly. Sustainable growth of aquaculture will require the development of highly nutritive and functional raw materials to efficiently replace fish meal. Enzymatic hydrolysis of marine and aquaculture raw materials could bring new functionalities to finished products. The aim of this study was to determine the zootechnical and transcriptomic performances of protein hydrolysates of different origins (tilapia, shrimp, and a combination of the two) in European seabass (Dicentrarchux labrax) fed a low fish meal diet (5\%), for 65\&nbsp;days.</p>

<p><strong>Results</strong></p>

<p class="rtejustify">Results were compared to a positive control fed with 20\% of fish meal. Growth performances, anterior intestine histological organization and transcriptomic responses were monitored and analyzed. Dietary inclusion of protein hydrolysates in the low fish meal diet restored similar growth performances to those of the positive control. Inclusion of dietary shrimp hydrolysate resulted in larger villi and more goblet cells, even better than the positive control. Transcriptomic analysis of the anterior intestine showed that dietary hydrolysate inclusion restored a pattern of intestinal gene expression very close to the pattern of the positive control. However, as compared to the low fish meal diet and depending on their origin, the different hydrolysates did not modulate metabolic pathways in the same way. Dietary shrimp hydrolysate inclusion modulated more metabolic pathways related to immunity, while nutritional metabolism was more impacted by dietary tilapia hydrolysate. Interestingly, the combination of the two hydrolysates enhanced the benefits of hydrolysate inclusion in diets: more genes and metabolic pathways were regulated by the combined hydrolysates than by each hydrolysate tested independently.</p>

<p><strong>Conclusions</strong></p>

<p class="rtejustify">Protein hydrolysates manufactured from aquaculture by-products are promising candidates to help replace fish meal in aquaculture feeds without disrupting animal metabolism and performances.</p>
},
	keywords = {Aquaculture, Aquafeed, By-products, European seabass, Fishmeal replacement, Hydrolysate, Illumina RNA-sequencing, Intestinal organization, Metabolic pathways},
	doi = {doi.org/10.1186/s12864-018-4780-0},
	author = {Leduc, Alexandre and C{\'e}line Zatylny-Gaudin and Robert, Marie and Corre, Erwan and Le Corguill{\'e}, Gildas and Castel, H{\'e}l{\`e}ne and Lefevre-Scelles, Antoine and Fournier, Vincent and Gisbert, Enric and Andree, Karl B. and Jo{\"e}l Henry}
}
@article {6744,
	title = {Dynamics of particulate organic matter composition in coastal systems: Forcing of spatio-temporal variability at multi-systems scale},
	journal = {Progress in Oceanography},
	volume = {162},
	year = {2018},
	month = {Jan-03-2018},
	pages = {271 - 289},
	issn = {00796611},
	doi = {10.1016/j.pocean.2018.02.026},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0079661117302100},
	author = {Li{\'e}nart, Camilla and Savoye, Nicolas and David, Val{\'e}rie and Ramond, Pierre and Rodriguez Tress, Paco and Hanquiez, Vincent and Marieu, Vincent and Aubert, Fabien and Aubin, S{\'e}bastien and Bichon, Sabrina and Boinet, Christophe and Bourasseau, Line and Bozec, Yann and Br{\'e}ret, Martine and Elsa Breton and Caparros, Jocelyne and Cariou, Thierry and Claquin, Pascal and Conan, Pascal and Corre, Anne-Marie and Costes, Laurence and Muriel Crouvoisier and Del Amo, Yolanda and Derriennic, Herv{\'e} and Dindinaud, Fran{\c c}ois and Duran, Robert and Durozier, Ma{\"\i}a and Devesa, J{\'e}r{\'e}my and Ferreira, Sophie and Eric Feunteun and Garcia, Nicole and Geslin, Sandrine and Emilie Grossteffan and Gueux, Aurore and Guillaudeau, Julien and Guillou, Ga{\"e}l and Jolly, Orianne and Lachauss{\'e}e, Nicolas and Lafont, Michel and Lagadec, V{\'e}ronique and Lamoureux, J{\'e}zabel and Lauga, B{\'e}atrice and Lebreton, Beno{\^\i}t and Lecuyer, Eric and Lehodey, Jean-Paul and Leroux, C{\'e}dric and St{\'e}phane L{\textquoteright}Helguen and Mac{\'e}, Eric and Maria, Eric and Mousseau, Laure and Antoine Nowaczyk and Pineau, Philippe and Petit, Franck and Pujo-Pay, Mireille and Raimbault, Patrick and Rimmelin-Maury, Peggy and Rouaud, Vanessa and Sauriau, Pierre-Guy and Sultan, Emmanuelle and Susperregui, Nicolas}
}
@article {5619,
	title = {Effect of CO2{\textendash}induced ocean acidification on the early development and shell mineralization of the European abalone (Haliotis tuberculata)},
	journal = {Journal of Experimental Marine Biology and Ecology},
	volume = {508},
	year = {2018},
	pages = {52 - 63},
	abstract = {<p>Ocean acidification is a major global stressor that leads to substantial changes in seawater carbonate chemistry, with potentially significant consequences for calcifying organisms. Marine shelled mollusks are ecologically and economically important species providing essential ecosystem services and food sources for other species. Because they use calcium carbonate (CaCO3) to produce their shells, mollusks are among the most vulnerable invertebrates to ocean acidification, with early developmental stages being particularly sensitive to pH changes. This study investigated the effects of CO2-induced ocean acidification on larval development of the European abalone Haliotis tuberculata, a commercially important gastropod species. Abalone larvae were exposed to a range of reduced pHs (8.0, 7.7 and 7.6) over the course of their development cycle, from early-hatched trochophore to pre-metamorphic veliger. Biological responses were evaluated by measuring the survival rate, morphology and development, growth rate and shell calcification. Larval survival was significantly lower in acidified conditions than in control conditions. Similarly, larval size was consistently smaller under low pH conditions. Larval development was also affected, with evidence of a developmental delay and an increase in the proportion of malformed or unshelled larvae. In shelled larvae, the intensity of birefringence decreased under low pH conditions, suggesting a reduction in shell mineralization. Since these biological effects were observed for pH values expected by 2100, ocean acidification may have potentially negative consequences for larval recruitment and persistence of abalone populations in the near future.</p>
},
	keywords = {Abalone, larval development, Ocean acidification, Shell mineralization},
	issn = {0022-0981},
	doi = {https://doi.org/10.1016/j.jembe.2018.08.005},
	url = {http://www.sciencedirect.com/science/article/pii/S0022098117304070},
	author = {Nathalie Wessel and Sophie Martin and Badou, Aicha and Philippe Dubois and Sylvain Huchette and Vivien Julia and Flavia Nunes and Ewan Harney and Christine Paillard and St{\'e}phanie Auzoux-Bordenave}
}
@article {7108,
	title = {The effect of dietary DHA and taurine on rotifer capture success, growth, survival and vision in the larvae of Atlantic bluefin tuna ( Thunnus thynnus )},
	journal = {Aquaculture},
	volume = {482},
	year = {2018},
	month = {Jan-01-2018},
	pages = {137 - 145},
	issn = {00448486},
	doi = {10.1016/j.aquaculture.2017.09.039},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0044848617303976},
	author = {Koven, W. and Nixon, O. and Allon, G. and Gaon, A. and El Sadin, S. and Jack Falcon and Besseau, L. and Escande, M. and Vassallo Agius, R. and Gordin, H. and Tandler, A.}
}
@article {5559,
	title = {Effect of sediment, salinity, and velocity on the behavior of juvenile winter flounder (Pseudopleuronectes americanus)},
	journal = {Environmental Biology of Fishes},
	year = {2018},
	month = {07/2018},
	pages = {1-10},
	abstract = {<p>Winter flounder (Pseudopleuronectes americanus) is a benthic flatfish that is economically important for recreational and commercial fishing in North America. In the last twenty years, the species has undergone a drastic decline, mainly due to anthropic influence. The goal of this study was to gain knowledge on habitat preferences and behavior of juvenile winter flounder to improve the management of natural stocks and optimize release sites of juveniles produced for stock enhancement. Three abiotic factors (sediment, current, and salinity) potentially influencing the distribution of flatfish species were tested in a recircurlating flume with juvenile winter flounder. Time budgets of observed behaviors including swimming, orientation, and burying capacity were analyzed. Sediment texture was the only factor that significantly influenced the burying behavior of winter flounder juveniles; shear velocity, salinity, and sediment had no effect on the orientation of juveniles.</p>
},
	keywords = {Current, salinity, Sediment, Swimming behavior, Winter flounder},
	issn = {0378-1909},
	doi = {https://doi.org/10.1007/s10641-018-0793-4},
	url = {https://link.springer.com/article/10.1007\%2Fs10641-018-0793-4},
	author = {Provencher, T and Fr{\'e}d{\'e}ric Olivier and Audet, C and R{\'e}jean Tremblay}
}
@article {5863,
	title = {Future intensification of summer hypoxia in the tidal Garonne River ({SW} France) simulated by a coupled hydro sedimentary-biogeochemical model},
	journal = {Environmental Science and Pollution Research},
	volume = {25},
	year = {2018},
	month = {sep},
	pages = {31957{\textendash}31970},
	doi = {10.1007/s11356-018-3035-6},
	url = {https://doi.org/10.1007/s11356-018-3035-6},
	author = {Katixa Lajaunie-Salla and Aldo Sottolichio and Sabine Schmidt and Xavier Litrico and Guillaume Binet and Gwena{\"e}l Abril}
}
@article {6817,
	title = {Gill chamber and gut microbial communities of the hydrothermal shrimp Rimicaris chacei Williams and Rona 1986: A possible symbiosis},
	journal = {PLOS ONE},
	volume = {13},
	year = {2018},
	month = {Feb-11-2018},
	pages = {e0206084},
	abstract = {<div class="rtejustify"><em>Rimicaris chacei </em>Williams and Rona 1986, formerly named as <em>Chorocaris chacei</em>, is a caridean<br />
shrimp living in deep-sea hydrothermal ecosystems. This shrimp is endemic to the Mid<br />
Atlantic Ridge (MAR) and lives at the periphery of aggregates of its well-known congeneric<br />
<em>R. exoculata</em> Williams and Rona 1986. Contrasting with the very dense and mobile clusters</div>

<div class="rtejustify">formed by <em>R. exoculata</em>, <em>R. chacei</em> lives in small groups of several individuals that are not</div>

<div class="rtejustify">very mobile. Although devoid of the characteristic hypertrophied cephalothorax of <em>R. exoculata</em>,<br />
which harbors the ectosymbionts, a microbial community has also been reported in the<br />
cephalothorax of <em>R. chacei</em>. Previous data on morphology, behavior and isotopic values indicate<br />
a diet based on a combination of feeding on its epibiotic bacteria and scavenging or<br />
occasional predation. In this study, our objective was to describe, for the first time, the distribution,<br />
morphology and phylogeny of the microbial communities associated with <em>R. chacei</em>.<br />
This species is significantly less studied than <em>R. exoculata</em>, but nevertheless represents the<br />
only other known example of symbiosis in crustaceans of MAR hydrothermal vent sites.<br />
Microbial communities have been observed at the same locations as in <em>R. exoculata</em><br />
(mouthparts, branchiostegites and digestive tract). However, in <em>R. chacei</em>, the surfaces<br />
occupied by the bacteria are smaller. The main lineages are affiliated to Epsilon and Gammaproteobacteria<br />
in the cephalothorax and to Deferribacteres, Mollicutes, Epsilon and<br />
Gammaproteobacteria in the digestive tract. Comparison with the well-described bacterial<br />
communities of <em>R. exoculata</em> and hypotheses about the role of these communities in <em>R. chacei</em><br />
are discussed.</div>
},
	doi = {10.1371/journal.pone.0206084},
	url = {http://dx.plos.org/10.1371/journal.pone.0206084},
	author = {Apremont, Vincent and Cambon-Bonavita, Marie-Anne and Cueff-Gauchard, Val{\'e}rie and Fran{\c c}ois, David and Pradillon, Florence and Laure Corbari and Magali Zbinden},
	editor = {Kuo, Chih-Horng}
}
@article {8704,
	title = {How do fishing practices influence sperm whale (Physeter macrocephalus) depredation on demersal longline fisheries?},
	journal = {Fisheries Research},
	volume = {206},
	year = {2018},
	month = {Jan-10-2018},
	pages = {14 - 26},
	issn = {01657836},
	doi = {10.1016/j.fishres.2018.04.019},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0165783618301255},
	author = {Janc, Ana{\"\i}s and Richard, Ga{\"e}tan and Guinet, Christophe and Arnould, John P.Y. and Villanueva, Maria Ching and Guy Duhamel and Nicolas Gasco and Tixier, Paul}
}
@article {5921,
	title = {Hydro-ecological controls on dissolved carbon dynamics in groundwater and export to streams in a temperate pine forest},
	journal = {Biogeosciences},
	volume = {15},
	year = {2018},
	pages = {669{\textendash}691},
	doi = {10.5194/bg-15-669-2018},
	url = {https://doi.org/10.5194/bg-15-669-2018},
	author = {Loris Deirmendjian and Denis Loustau and Laurent Augusto and S{\'e}bastien Lafont and Christophe Chipeaux and Dominique Poirier and Gwena{\"e}l Abril}
}
@article {5921,
	title = {Hydro-ecological controls on dissolved carbon dynamics in groundwater and export to streams in a temperate pine forest},
	journal = {Biogeosciences},
	volume = {15},
	year = {2018},
	pages = {669{\textendash}691},
	doi = {10.5194/bg-15-669-2018},
	url = {https://doi.org/10.5194/bg-15-669-2018},
	author = {Loris Deirmendjian and Denis Loustau and Laurent Augusto and S{\'e}bastien Lafont and Christophe Chipeaux and Dominique Poirier and Gwena{\"e}l Abril}
}
@article {5862,
	title = {Invasive Aquatic Plants as Ecosystem Engineers in an Oligo-Mesotrophic Shallow Lake},
	journal = {Frontiers in Plant Science},
	volume = {9},
	year = {2018},
	month = {dec},
	doi = {10.3389/fpls.2018.01781},
	url = {https://doi.org/10.3389/fpls.2018.01781},
	author = {Cristina Ribaudo and Juliette Tison-Rosebery and Damien Buquet and Gwilherm Jan and Aur{\'e}lien Jamoneau and Gwena{\"e}l Abril and Pierre Anschutz and Vincent Bertrin}
}
@article {5364,
	title = {Latitudinal Patterns in European Seagrass Carbon Reserves: Influence of Seasonal Fluctuations versus Short-Term Stress and Disturbance Events},
	journal = {Frontiers in Plant Science},
	volume = {9},
	year = {2018},
	abstract = {<p>Seagrass meadows form highly productive and valuable ecosystems in the marine environment. Throughout the year, seagrass meadows are exposed to abiotic and biotic variations linked to (i) seasonal fluctuations, (ii) short-term stress events such as, e.g., local nutrient enrichment, and (iii) small-scale disturbances such as, e.g., biomass removal by grazing. We hypothesized that short-term stress events and smallscale disturbances may affect seagrass chance for survival in temperate latitudes. To test this hypothesis we focused on seagrass carbon reserves in the form of starch stored seasonally in rhizomes, as these have been defined as a good indicator for winter survival. Twelve Zostera noltei meadows were monitored along a latitudinal<br />
gradient in Western Europe to firstly assess the seasonal change of their rhizomal starch content. Secondly, we tested the effects of nutrient enrichment and/or biomass removal on the corresponding starch content by using a short-term manipulative field experiment at a single latitude in the Netherlands. At the end of the growing season, we observed a weak but significant linear increase of starch content along the latitudinal gradient from south to north. This agrees with the contention that such reserves are essential for regrowth after winter, which is more severe in the north. In addition, we also observed a weak but significant positive relationship between starch content at the beginning of the growing season and past winter temperatures. This implies a lower regrowth potential after severe winters, due to diminished starch content at the beginning of the growing season. Short-term stress and disturbances<br />
may intensify these patterns, because our manipulative experiments show that when nutrient enrichment and biomass loss co-occurred at the end of the growing season, Z. noltei starch content declined. In temperate zones, the capacity of seagrasses to accumulate carbon reserves is expected to determine carbon-based regrowth after winter. Therefore, processes affecting those reserves might affect seagrass resilience. With increasing human pressure on coastal systems, short- and small-scale stress events are expected to become more frequent, threatening the resilience of seagrass ecosystems, particularly at higher latitudes, where populations tend to have an annual cycle highly dependent on their storage capacity.</p>
},
	doi = {doi: 10.3389/fpls.2018.00088},
	author = {L.M. Soissons and E.P. Haanstra and M.M. van Katwijk and R. Asmus and I. Auby and L. Barill{\'e} and F.G. Brun and P.G. Cardoso and Nicolas Desroy and J{\'e}r{\^o}me Fournier and F. Ganthy and J.M. Garmendia and Laurent Godet and T.F. Grilo and P. Kadel and B. Ondiviela and G. Peralta and A. Puente and M. Recio and L. Rigouin and M. Valle and P.M.J. Herman and T.J. Bouma}
}
@article {6751,
	title = {Migration behaviour and escapement of European silver eels from a large lake and wetland system subject to water level management (Grand-Lieu Lake, France): New insights from regulated acoustic telemetry data},
	journal = {Ecology of Freshwater Fish},
	volume = {27},
	year = {2018},
	pages = {570-579},
	abstract = {Current knowledge about the downstream migration of sexually mature European eels (Anguilla\&nbsp;anguilla) remains incomplete, particularly in still water habitats such as lakes and wetlands subject to water level management. However, for the management of this endangered species, it is important to understand migration dynamics, and contribution to the breeding stock. This study aimed to assess the parameters that trigger and guide the migration of silver eels in the largest floodplain lake and associated wetlands in France (the sluice regulated Grand-Lieu Lake). A telemetry survey of 50 acoustic and PIT-tagged female silver eels was performed during the 2015{\textendash}2016 migration period. We deployed a novel telemetric approach, using receivers to delimit several restricted virtual boxes to determine the instantaneous location of individuals and to transform simple discrete telemetric data into presence/absence data. The low numbers leaving the lake centre are probably explained by the lack of orienting water flows or other environmental clues, but whilst the fate of 34\% (17/50) of the tagged eels is unknown, 18\% (9/50) were caught by commercial fishermen. Modelling showed that detections were not clearly associated with environmental factors typically involved in riverine migrations (e.g. current velocity, atmospheric pressure and temperature) but they were particularly associated with higher and increasing water levels and, for eels exiting the lake, a sharp increase when sluice gates were opened to an effective gap of \&gt;75\&nbsp;cm. It is concluded that management of water levels and sluice gate opening during the migration period might aid escapement of silver eels.},
	keywords = {Anguilla~anguilla, cues, silver eel migration, triggers},
	doi = {10.1111/eff.12371},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12371},
	author = {Thomas Trancart and Eric Feunteun and Danet, Valentin and Alexandre Carpentier and Mazel, Virgile and Charrier, Fabien and Druet, Morgan and Anthony Acou}
}
@article {6634,
	title = {The nanos1 gene was duplicated in early Vertebrates and the two paralogs show different gonadal expression profiles in a shark},
	journal = {Scientific Reports},
	volume = {8},
	year = {2018},
	month = {Jan-12-2018},
	doi = {10.1038/s41598-018-24643-1},
	url = {http://www.nature.com/articles/s41598-018-24643-1},
	author = {Gribouval, Laura and Pascal Sourdaine and Lareyre, Jean-Jacques and Bellaiche, Johanna and Le Gac, Florence and Mazan, Sylvie and Guiardiere, C{\'e}cile and Auvray, Pierr{\"\i}ck and Aude Gautier}
}
@article {5864,
	title = {{OZCAR}: The French Network of Critical Zone Observatories},
	journal = {Vadose Zone Journal},
	volume = {17},
	year = {2018},
	doi = {10.2136/vzj2018.04.0067},
	url = {https://doi.org/10.2136/vzj2018.04.0067},
	author = {J. Gaillardet and I. Braud and F. Hankard and S. Anquetin and O. Bour and N. Dorfliger and J.R. de Dreuzy and S. Galle and C. Galy and S. Gogo and L. Gourcy and F. Habets and F. Laggoun and L. Longuevergne and T. Le Borgne and F. Naaim-Bouvet and G. Nord and V. Simonneaux and D. Six and T. Tallec and C. Valentin and Gwena{\"e}l Abril and P. Allemand and A. Ar{\`e}nes and B. Arfib and L. Arnaud and N. Arnaud and P. Arnaud and S. Audry and V. Bailly Comte and C. Batiot and A. Battais and H. Bellot and E. Bernard and C. Bertrand and H. Bessi{\`e}re and S. Binet and J. Bodin and X. Bodin and L. Boithias and J. Bouchez and B. Boudevillain and I. Bouzou Moussa and F. Branger and J. J. Braun and P. Brunet and B. Caceres and D. Calmels and B. Cappelaere and H. Celle-Jeanton and F. Chabaux and K. Chalikakis and C. Champollion and Y. Copard and C. Cotel and P. Davy and P. Deline and G. Delrieu and J. Demarty and C. Dessert and M. Dumont and C. Emblanch and J. Ezzahar and M. Est{\`e}ves and V. Favier and M. Faucheux and N. Filizola and P. Flammarion and P. Floury and O. Fovet and M. Fournier and A. J. Francez and L. Gandois and C. Gascuel and E. Gayer and C. Genthon and M. F. G{\'e}rard and D. Gilbert and I. Gouttevin and M. Grippa and G. Gruau and A. Jardani and L. Jeanneau and J. L. Join and H. Jourde and F. Karbou and D. Labat and Yvan Lagadeuc and E. Lajeunesse and R. Lastennet and W. Lavado and E. Lawin and T. Lebel and C. Le Bouteiller and C. Legout and Y. Lejeune and E. Le Meur and N. Le Moigne and J. Lions and A. Lucas and J. P. Malet and C. Marais-Sicre and J. C. Mar{\'e}chal and C. Marlin and P. Martin and J. Martins and J. M. Martinez and N. Massei and A. Mauclerc and N. Mazzilli and J. Mol{\'e}nat and P. Moreira-Turcq and E. Mougin and S. Morin and J. Ndam Ngoupayou and G. Panthou and C. Peugeot and G. Picard and M. C. Pierret and G. Porel and A. Probst and J. L. Probst and A. Rabatel and D. Raclot and L. Ravanel and F. Rejiba and P. Ren{\'e} and O. Ribolzi and J. Riotte and A. Rivi{\`e}re and H. Robain and L. Ruiz and J. M. Sanchez-Perez and W. Santini and S. Sauvage and P. Schoeneich and J. L. Seidel and M. Sekhar and O. Sengtaheuanghoung and N. Silvera and M. Steinmann and A. Soruco and G. Tallec and E. Thibert and D. Valdes Lao and C. Vincent and D. Viville and P. Wagnon and R. Zitouna}
}
@book {5650,
	title = {Peces de consumo de la Amazon{\'\i}a Peruana},
	year = {2018},
	pages = {218},
	edition = {Instituto de Investigaciones de la Amazon{\'\i}a Peruana (IIAP), Iquitos, Per{\'u}},
	author = {Garc{\'\i}a-D{\'a}vila, C and Sanchez, H. and Flores, M and Mejia, J. and Angulo, C. and Castro-Ruiz, D. and Estivals, G. and Garcia, Aurea and Vargas, G. and Nolorbe, C. and Jesus Nu{\~n}ez-Rodriguez and Mariac, C{\'e}dric and Fabrice Duponchelle and Renno, Jean-Francois}
}
@article {5919,
	title = {Predominance of phytoplankton-derived dissolved and particulate organic carbon in a highly eutrophic tropical coastal embayment (Guanabara Bay, Rio de Janeiro, Brazil)},
	journal = {Biogeochemistry},
	volume = {137},
	year = {2018},
	pages = {1{\textendash}14},
	doi = {10.1007/s10533-017-0405-y},
	url = {https://doi.org/10.1007/s10533-017-0405-y},
	author = {Luiz C. Cotovicz and Bastiaan A. Knoppers and Nilva Brandini and Dominique Poirier and Suzan J. Costa Santos and Renato C. Cordeiro and Gwena{\"e}l Abril}
}
@article {8407,
	title = {Presence of larvae of lampreys, Lampetra sp. (Cephalaspidomorphi, Petromyzontiformes), in a French Catalan basin},
	journal = {Cybium},
	volume = {42},
	year = {2018},
	pages = {216-218},
	abstract = {Des ammoc{\`e}tes de lamproies ont {\'e}t{\'e} r{\'e}cemment captur{\'e}es pour la premi{\`e}re fois dans un cours d{\textquoteright}eau de Catalogne fran{\c c}aise, la T{\^e}t. Les identifications morphologique et mol{\'e}culaire ont d{\'e}montr{\'e} que ces ammoc{\`e}tes appartiennent au complexe [Lampetra fluviatilis / Lampetra planeri]. Les lamproies et leurs fray{\`e}res {\'e}tant prot{\'e}g{\'e}es en France, cette {\'e}tude aura une incidence sur la gestion du cours d{\textquoteright}eau de la T{\^e}t.},
	author = {Arsento, R{\'e}my and Richarte, K{\'e}vin and Fonteneau, Andr{\'e} and Denys, Ga{\"e}l}
}
@article {6857,
	title = {Processus morphodynamiques et s{\'e}dimentaires dans les mangroves en {\'e}rosion de Mayotte, oc{\'e}an Indien},
	journal = {VertigO},
	year = {2018},
	month = {May-09-2018},
	doi = {10.4000/vertigo10.4000/vertigo.2039110.4000/vertigo.20531},
	url = {http://journals.openedition.org/vertigo},
	author = {Jeanson, Matthieu and Franck Dolique and Anthony, Edward~J.}
}
@article {6752,
	title = {Silver eel downstream migration in the River Rhine, route choice, and its impacts on escapement: A 6-year telemetry study in a highly anthropized system},
	journal = {Ecological Engineering},
	volume = {123},
	year = {2018},
	pages = {202 - 211},
	abstract = {Several routes are available for the downstream migration of silver eels in the river Rhine system. Very different effects on migration success can result from this choice, such as speed and migration duration or escapement rate. We studied the downstream migration of silver eels in a river section with two different routes. The first route is the initial and old riverbed, with two dams equipped with two rather small or medium sized hydropower plants (HPPs) located at the beginning and at the exit of the bypass stretch. Both HPPs have small bar spacing (10 mm and 20 mm, respectively) and the second HPP has two downstream bypasses. The second route is a power canal, supplying four major HPPs (maximum discharge capacity = 1400 m3 s-1) and a nuclear power plant with cooling water. Firstly, this study focused on highlighting the factors influencing route choice. Secondly, we focused on the consequences of this choice. We demonstrate that water current management in the old riverbed at the study site had a 40\% higher negative effect on eel survival than that by a consecutive passage in four turbines.},
	keywords = {Escapement, Migration, Path selection, Rhine river, Silver-eel, Telemetry},
	issn = {0925-8574},
	doi = {https://doi.org/10.1016/j.ecoleng.2018.09.002},
	url = {http://www.sciencedirect.com/science/article/pii/S0925857418303318},
	author = {Thomas Trancart and St{\'e}phane T{\'e}tard and Anthony Acou and Eric Feunteun and Fr{\'e}d{\'e}ric Schaeffer and Eric de Oliveira}
}
@article {5964,
	title = {Some histological data of bone and teeth in the Rift Eelpout, Thermarces cerberus (Zoarcidae)},
	journal = {Cybium},
	volume = {42},
	year = {2018},
	pages = {083-086},
	doi = {10.26028/cybium/2018-421-007},
	url = {http://sfi-cybium.fr/fr/some-histological-data-bone-and-teeth-rift-eelpout-thermarces-cerberus-zoarcidae},
	author = {Meunier, Francois J. and Arnulf, Isabelle}
}
@article {7180,
	title = {Subtidal Microphytobenthos: A Secret Garden Stimulated by the Engineer Species Crepidula fornicata},
	journal = {Frontiers in Marine Science},
	volume = {5},
	year = {2018},
	month = {Jun-12-2019},
	doi = {10.3389/fmars.2018.00475},
	url = {https://www.frontiersin.org/article/10.3389/fmars.2018.00475/full},
	author = {Androuin, Thibault and Polerecky, Lubos and Decottignies, Priscilla and Dubois, Stanislas F. and Dupuy, Christine and C{\'e}dric Hubas and Jesus, Bruno and Le Gall, Erwan and Marzloff, Martin P. and Carlier, Antoine}
}
@article {6797,
	title = {Testing the transferability of track-based habitat models for sound marine spatial planning},
	journal = {Diversity and Distribution},
	volume = {24},
	year = {2018},
	month = {12/2018},
	pages = {1772-1787},
	abstract = {Aim<br />
<br />
Species distribution models (SDMs) are statistical tools aiming at mapping and predicting species distributions across landscapes. Data acquisition being limited in space and time, SDM are commonly used to predict species distribution in unsampled areas or years, with the expectation that modelled habitat{\textendash}species relationships will hold across spatial or temporal contexts (i.e., model transferability). This key aspect of habitat modelling has major implications for spatial management, yet it has received limited attention, especially in the dynamic marine realm. Our aims were to test geographical and temporal habitat model transferability and to make recommendations for future population-scale habitat modelling.<br />
<br />
Location<br />
<br />
Two contrasted regions of the North Western Mediterranean Sea: the cold and productive waters of the Gulf of Lion, and the warm and oligotrophic waters of Corsica.<br />
<br />
Methods<br />
<br />
We GPS-tracked 189 Scopoli{\textquoteright}s shearwaters, Calonectris diomedea, at four breeding sites during the chick-rearing period in 2011 and 2012 (418 foraging trips), and analysed their fine-scale foraging behaviour. We then built colony-specific habitat models (GAMMs) to test SDM geographical and temporal transferability and investigated the effect of extrinsic (environmental extrapolation) and intrinsic (trip characteristics) factors on transferability.<br />
<br />
Results<br />
<br />
Scopoli{\textquoteright}s shearwaters from our four study sites had comparable foraging strategies (as assessed from trip characteristics and isotopic diet tracers). Despite such similarities, SDMs revealed colony-specific habitat associations. Geographical and temporal model transferability was better within than between regions.<br />
<br />
Main conclusions<br />
<br />
Crucially, our study illustrates how habitat{\textendash}species relationships can vary between colonies located \&lt;200\&nbsp;km apart, and underlines the effect of spatio-temporal extrapolation in habitat modelling. We therefore warn that defining adequate spatial scales for model predictions is critical to sound marine spatial planning and conservation.},
	keywords = {biologging, habitat modelling; transferability;central place foragers},
	doi = {10.1111/ddi.12832},
	url = {https://onlinelibrary.wiley.com/doi/full/10.1111/ddi.12832},
	author = {Clara P{\'e}ron and Authier, Matthieu and Gr{\'e}millet, David}
}
@article {5922,
	title = {Trophic ecology of speckled peacock bass Cichla temensis Humboldt 1821 in the middle Negro River, Amazon, Brazil},
	journal = {Ecology of Freshwater Fish},
	volume = {27},
	year = {2018},
	pages = {1076{\textendash}1086},
	doi = {10.1111/eff.12416},
	url = {https://doi.org/10.1111/eff.12416},
	author = {Jamerson Aguiar-Santos and Pieter A. P. deHart and Marc Pouilly and Carlos E.C. Freitas and Fl{\'a}via K. Siqueira-Souza}
}
@article {5923,
	title = {The unique functioning of a pre-Columbian Amazonian floodplain fishery},
	journal = {Scientific Reports},
	volume = {8},
	year = {2018},
	doi = {10.1038/s41598-018-24454-4},
	url = {https://doi.org/10.1038/s41598-018-24454-4},
	author = {Rumsa{\"\i}s Blatrix and Bruno Roux and Philippe B{\'e}arez and Gabriela Prestes-Carneiro and Marcelo Amaya and Jose Luis Aramayo and Leonor Rodrigues and Umberto Lombardo and Jose Iriarte and Jonas Gregorio de Souza and Mark Robinson and Cyril Bernard and Marc Pouilly and M{\'e}lisse Dur{\'e}cu and Carl F. Huchzermeyer and Mashuta Kalebe and Alex Ovando and Doyle McKey}
}
@article {7034,
	title = {Use of an acoustic telemetry array for fine scale fish behaviour assessment of captive Paiche, <i>Arapaima gigas,</i>               breeders},
	journal = {Aquaculture Research},
	volume = {49},
	year = {2018},
	month = {Jan-06-2018},
	pages = {2296 - 2304},
	doi = {10.1111/are.2018.49.issue-610.1111/are.13692},
	url = {http://doi.wiley.com/10.1111/are.2018.49.issue-6},
	author = {Jesus Nu{\~n}ez-Rodriguez and Vela D{\'\i}az, Antonia and Bazan-Albitez, Roger and Rebaza Alfaro, Carmela and Koua, Daniel and N{\'u}{\~n}ez, Lucie and Testi, Baptiste and Renno, Jean-Francois and Duponchelle, Fabrice and Pella, Herv{\'e}}
}
@article {5916,
	title = {Variation of the isotopic composition of dissolved organic carbon during the runoff cycle in the Amazon River and the floodplains},
	journal = {Comptes Rendus Geoscience},
	volume = {350},
	year = {2018},
	pages = {65{\textendash}75},
	doi = {10.1016/j.crte.2017.11.001},
	url = {https://doi.org/10.1016/j.crte.2017.11.001},
	author = {Patrick Alb{\'e}ric and Marcela A.P. P{\'e}rez and Patricia Moreira-Turcq and Marc F Benedetti and Steven Bouillon and Gwena{\"e}l Abril}
}
@article {6666,
	title = {A Bayesian two-stage biomass model for stock assessment of data-limited species: An application to cuttlefish (Sepia officinalis) in the English Channel},
	journal = {Fisheries Research},
	volume = {191},
	year = {2017},
	pages = {131-143},
	abstract = {Cuttlefish is a key commercial species in the English Channel fishery in terms of landings and value. Age-based assessment methods are limited by time-consuming age determination with statoliths and the lack of stock assessment models tailored to this data-limited species. A two-stage biomass model is developed in the Bayesian state-space modelling framework that allows inferences to be made on the stock biomass at the start, middle and end of each fishing seasons between 1992 and 2014, while accounting for both process and measurement errors and to assimilate various sources of information. A method that uses ancillary length-frequency data is developed to provide an informative prior distribution for the biomass growth rate parameter g (E\&nbsp;=\&nbsp;0.89) and its annual variability (CV\&nbsp;=\&nbsp;0.1). The new model is a substantial improvement on the existing stock assessment method used by the International Council for the Exploration of the Seas. Taking into consideration a time-varying g parameter provides a more ecologically meaningful model with regard to the sensitivity of the cuttlefish population dynamics to environmental fluctuations and improves model fit. The model also provides predictions of the unexploited biomass in winter, which is based on survey data, and helps manage the stock in the event of strong depletion. {\textcopyright} 2017 Elsevier B.V.},
	issn = {01657836},
	doi = {10.1016/j.fishres.2017.03.010},
	url = {http://www.sciencedirect.com/science/article/pii/S0165783617300772},
	author = {Juliette Alemany and Etienne Rivot and Foucher, Eric and Jo{\"e}l Vigneau and Jean-Paul Robin}
}
@article {8152,
	title = {Contamination and depuration of Paralytic Shellfish Poisoning by Acanthocardia tuberculata cockles and Callista chione clams in Moroccan waters},
	journal = {Journal of Materials and Environmental Sciences},
	volume = {8},
	year = {2017},
	pages = {4634-4641},
	abstract = {This study of\&nbsp;Gymnodinium catenatum\&nbsp;was conducted across two sampling stations; M{\textquoteright}diq bay and Oued Laou estuary during the period from July 2007 to May 2009.\&nbsp;Gymnodinium catenatum\&nbsp;blooms occurred after a rainfall event in autumn and early winter. Statically analyses showed a positive correlation with rainfall. During January 2008, the\&nbsp;G. catenatum\&nbsp;bloom resulted in contamination of tuberculate cockles and sweet clam by Paralytic Shellfish Poisoning (PSP) toxins. In the Oued Laou estuary, the levels of these toxins in shellfish went beyond the normative threshold for consumption of shellfish, (80\&nbsp;μg SXTeq. /100g of meat) and reached (710 {\textpm} 82.07) and (198 {\textpm} 6.56)\&nbsp;μg SXTeq. /100g of meat in cockles and sweet clam respectively. In M{\textquoteright}diq bay, concentrations of PSP toxins in the meat of these two shellfish were lower (256.57 {\textpm} 12.22\&nbsp;μg SXTeq. /100g and 80.66 {\textpm} 8.14\&nbsp;μg SXTeq. /100g of meat in tuberculate cockles and sweet clam respectively. An experimental test of depuration of tuberculate cockles and sweet clam contaminated by the PSP toxins was conducted in laboratory conditions in the first week of January 2008. The results showed partial and progressive elimination of PSP toxins in two shellfish species over time. In the tuberculate cockle, the elimination of PSP appears to be slower compared with the sweet clam; it took 120 days to reach levels of 80\&nbsp;μg SXTeq. /100g of meat, on the other hand only 3 days were needed to reach this safe concentration in the sweet clam.},
	author = {B. Rijal Leblad and H. Nhhala and M. Daoudi and M. Marhraoui and M. K. Ouelad Abdellah and Beno{\^\i}t V{\'e}ron and H. Er-Raioui}
}
@article {6894,
	title = {Cross-linking plankton indicators to better define GES of pelagic habitats - EcApRHA Deliverable WP1.4},
	year = {2017},
	abstract = {The multimetric approach is a methodological tool which can be used to study a range of systems, including GES assessment of marine waters. Three indicators (PH1, PH2 and PH3) are currently being developed in the frame of the OSPAR convention for the pelagic habitat component. The three PH indicators provide information on different and complementary aspects of the plankton community that, only when considered altogether, provide a holistic vision of the ecosystem which is central to GES assessment. The present document aims at combining their information for the first time, following a multimetric approach. For this purpose, it was decided that the Plymouth Marine Laboratory L4 station would be the focus of this deliverable for the period 2000-2014.<br>
<br>
Different results were obtained from PH1, PH2 and PH3 regarding dates characterized by atypical plankton community structures, stressing their complementarity. However, similar results were also found for some sampling dates, suggesting that the complementary information conveyed by the three PH indicators shows potential for generating a higher-level indicator.<br>
<br>
This work has also evidenced a number of gaps and issues in the integration of the three PH indicators that we address with guidelines. In particular, efforts should be devoted to overcome technical difficulties in the integration the PH3 indicators, especially regarding differences in temporal resolution. Future development of the indicators could involve complementary techniques to classical methods to overcome taxonomic constraints. In the frame of this project, the access to data in certain format was identified also found problematic. Creating a central database of pre-formatted data managed by a group of experts could also benefit the regional calibration of the indicators for areas where appropriate data are available. Establishing a clear and easily accessible report which details all the monitoring guidelines concerning the metrics used for the OSPAR PH indicators could also be beneficial for homogenising the monitoring and inter-comparability of data among contracting parties in the goal of regional marine management.},
	author = {Budria, Alexandre and Anais Aubert and Rombouts, Isabelle and Ostle, Clare and Angus Atkinson and Widdicombe, Claire and Goberville, Eric and Luis Felipe Artigas and Johns, David and Padegimas, Bernardas and Corcoran, Emily and McQuatters-Gollop, Abigail}
}
@article {4728,
	title = {Deep conservation of bivalve nacre proteins highlighted by shell matrix proteomics of the Unionoida Elliptio complanata and Villosa lienosa},
	journal = {Journal of The Royal Society Interface},
	volume = {14},
	year = {2017},
	abstract = {<p>The formation of the molluscan shell nacre is regulated to a large extent by a matrix of extracellular macromolecules that are secreted by the shell-forming tissue, the mantle. This so-called {\textquoteleft}calcifying matrix{\textquoteright} is a complex mixture of proteins, glycoproteins and polysaccharides that is assembled and occluded within the mineral phase during the calcification process. Better molecular-level characterization of the substances that regulate nacre formation is still required. Notable advances in expressed tag sequencing of freshwater mussels, such as Elliptio complanata and Villosa lienosa, provide a pre-requisite to further characterize bivalve nacre proteins by a proteomic approach. In this study, we have identified a total of 48 different proteins from the insoluble matrices of the nacre, 31 of which are common to both E. complanata and V. lienosa. A few of these proteins, such as PIF, MSI60, CA, shematrin-like, Kunitz-like, LamG, chitin-binding-containing proteins, together with A-, D-, G-, M- and Q-rich proteins, appear to be analogues, if not true homologues, of proteins previously described from the pearl oyster or the edible mussel nacre matrices, thus forming a remarkable list of deeply conserved nacre proteins. This work constitutes a comprehensive nacre proteomic study of non-pteriomorphid bivalves that has enabled us to describe the molecular basis of a deeply conserved biomineralization toolkit among nacreous shell-bearing bivalves, with regard to proteins associated with other shell microstructures, with those of other mollusc classes (gastropods, cephalopods) and, finally, with other lophotrochozoans (brachiopods).</p>
},
	issn = {1742-5689},
	doi = {10.1098/rsif.2016.0846},
	url = {http://rsif.royalsocietypublishing.org/content/14/126/20160846},
	author = {Marie, Benjamin and Arivalagan, Jaison and Math{\'e}ron, Lucr{\`e}ce and Bolbach, G{\'e}rard and Berland, Sophie and Marie, Arul and Marin, Fr{\'e}d{\'e}ric}
}
@article {6667,
	title = {Dynamics of particulate organic matter composition in coastal systems: A spatio-temporal study at multi-systems scale},
	journal = {Progress in Oceanography},
	volume = {156},
	year = {2017},
	pages = {221-239},
	abstract = {In coastal systems, the multiplicity of sources fueling the pool of particulate organic matter (POM) leads to divergent estimations of POM composition. Eleven systems (two littoral systems, eight embayments and semi-enclosed systems and one estuary) distributed along the three maritime fa{\c c}ades of France were studied for two to eight years in order to quantify the relative contribution of organic matter sources to the surface-water POM pool in coastal systems. This study was based on carbon and nitrogen elemental and isotopic ratios, used for running mixing models. The POM of the estuary is dominated by terrestrial material (93\% on average), whereas the POM of the other systems is dominated by phytoplankton (84\% on average). Nevertheless, for the latter systems, the POM composition varies in space, with (1) systems where POM is highly composed of phytoplankton (>=93\%), (2) systems characterized by a non-negligible contribution of benthic (8{\textendash}19\%) and/or river (7{\textendash}19\%) POM sources, and (3) the Mediterranean systems characterized by the contribution of diazotroph organisms (ca. 14\%). A continent-to-ocean gradient of river and/or benthic POM contribution is observed. Finally, time series reveal (1) seasonal variations of POM composition, (2) differences in seasonality between systems, and (3) an inshore-offshore gradient of seasonality within each system that were sampled at several stations. Spatial and seasonal patterns of POM composition are mainly due to local to regional processes such as hydrodynamics and sedimentary hydrodynamic (e.g. resuspension processes, changes in river flows, wind patterns influencing along-shore currents) but also due to the geomorphology of the systems (depth of the water column, distance to the shore). Future studies investigating the link between these forcings and POM composition would help to better understand the dynamics of POM composition in coastal systems. {\textcopyright} 2017 Elsevier Ltd},
	keywords = {bacterium, benthos, biogeochemistry, Biological materials, C and n stable isotopes, C:N ratio, Carbon, carbon isotope, Coastal systems, coastal zone, Fluid dynamics, France, geomorphology, Hydrodynamics, Isotopes, isotopic ratio, Mediterranean sea, Meta analysis, meta-analysis, Mixing, Mixing models, nitrogen isotope, Organic compounds, particulate organic matter, Particulate organic matters, Phytoplankton, prokaryote, Rivers, seasonality, spatiotemporal analysis, stable isotope, Surface water, Surface waters, terrestrial deposit, Time series},
	issn = {00796611},
	doi = {10.1016/j.pocean.2017.03.001},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0079661116301914},
	author = {Li{\'e}nart, Camilla and Savoye, Nicolas and Bozec, Yann and Elsa Breton and Conan, Pascal and David, Val{\'e}rie and Eric Feunteun and Karine Granger{\'e} and Kerherv{\'e}, P. and Lebreton, B. and S{\'e}bastien Lefebvre and St{\'e}phane L{\textquoteright}Helguen and Mousseau, Laure and Raimbault, P and Richard, P. and Riera, P. and Sauriau, P.-G. and Gauthier Schaal and Aubert, F. and Aubin, S. and Bichon, S. and Boinet, C. and Bourasseau, L. and Br{\'e}ret, M. and Caparros, J. and Cariou, T. and Charlier, K. and Claquin, P. and Vincent Cornille and Corre, A.-M. and Costes, L. and Crispi, O. and Muriel Crouvoisier and Czamanski, M. and Del Amo, Y. and Derriennic, H. and Dindinaud, F. and Durozier, M. and Hanquiez, V. and Antoine Nowaczyk and Devesa, J. and Ferreira, S. and Fornier, M. and Garcia, F. and Garcia, N. and Geslin, S. and Emilie Grossteffan and Gueux, A. and Guillaudeau, J. and Guillou, G. and Joly, O. and Lachauss{\'e}e, N. and Lafont, M. and Lamoureux, J. and Lecuyer, E. and Lehodey, J.-P. and Lemeille, D. and Leroux, C. and Mac{\'e}, E. and Maria, E. and Pineau, P. and Petit, F. and Pujo-Pay, M. and Rimelin-Maury, P. and Sultan, E.}
}
@article {5967,
	title = {Earliest known lepisosteoid extends the range of anatomically modern gars to the Late Jurassic},
	journal = {Scientific reports},
	volume = {7},
	year = {2017},
	pages = {17830},
	author = {Brito, Paulo M. and Alvarado-Ortega, J and Meunier, Francois J.}
}
@article {4755,
	title = {The expression of nuclear and membrane estradiol receptors in the European eel throughout spermatogenesis.},
	journal = {Comparative Biochemistry and Physiology, Part A},
	volume = {203},
	year = {2017},
	pages = {91-99},
	author = {Morini, Marina and Penaranda, David S and V{\'\i}lchez, M C and Tveiten, Helge and Anne-Gaelle Lafont and Sylvie Dufour and P{\'e}rez, L and Asturiano, J F}
}
@article {5103,
	title = {Eye Development in Sepia officinalis Embryo: What the Uncommon Gene Expression Profiles Tell Us about Eye Evolution},
	journal = {Front. Physiol.},
	year = {2017},
	month = {08/2017},
	abstract = {<p class="rtejustify">In metazoans, there is a remarkable diversity of photosensitive structures; their shapes, physiology, optical properties, and development are different. To approach the evolution of photosensitive structures and visual function, cephalopods are particularly interesting organisms due to their most highly centralized nervous system and their camerular eyes which constitute a convergence with those of vertebrates. The eye morphogenesis in numerous metazoans is controlled mainly by a conserved Retinal Determination Gene Network (RDGN) including pax, six, eya, and dac playing also key developmental roles in non-retinal structures and tissues of vertebrates and Drosophila. Here we have identified and explored the role of Sof-dac, Sof-six1/2, Sof-eya in eye morphogenesis, and nervous structures controlling the visual function in Sepia officinalis. We compare that with the already shown expressions in eye development of Sof-otx and Sof-pax genes. Rhodopsin is the pigment responsible for light sensitivity in metazoan, which correlate to correlate visual function and eye development. We studied Sof-rhodopsin expression during retina differentiation. By in situ hybridization, we show that (1) all of the RDGN genes, including Sof-pax6, are expressed in the eye area during the early developmental stages but they are not expressed in the retina, unlike Sof-otx, which could have a role in retina differentiation; (2) Sof-rhodopsin is expressed in the retina just before vision gets functional, from stage 23 to hatching. Our results evidence a role of Sof-six1/2, Sof-eya, and Sof-dac in eye development. However, the gene network involved in the retinal photoreceptor differentiation remains to be determined. Moreover, for the first time, Sof-rhodopsin expression is shown in the embryonic retina of cuttlefish suggesting the evolutionary conservation of the role of rhodopsin in visual phototransduction within metazoans. These findings are correlated with the physiological and behavioral observations suggesting that S. officinalis is able to react to light stimuli from stage 25 of organogenesis on, as soon as the first retinal pigments appear.</p>
},
	keywords = {dac, eya, eye development, rhodopsin, Sepia officinalis, six},
	doi = {10.3389/fphys.2017.00613},
	author = {Imarazen, Boudjema and Aude Andouche and Yann Bassaglia and Pascal Jean Lopez and Laure Bonnaud-Ponticelli}
}
@article {4800,
	title = {Food resources of the bivalve Astarte elliptica in a sub-Arctic fjord: a multi-biomarker approach},
	journal = {Marine Ecology Progress Series},
	volume = {567},
	year = {2017},
	pages = {139-156},
	abstract = {<p>ABSTRACT: It is generally agreed that pelagic-benthic coupling is tight on Arctic shelves, i.e. that organic matter produced in the surface layers supports the seafloor and benthos. However, this paradigm is mainly based on the assumption that phytoplankton and ice algae are the main sources of carbon for the benthic communities. Climate change is expected to alter the relative contribution of food sources for benthic organisms. Macroalgal biomass is predicted to increase in near-shore systems in response to increased temperature and reduced sea ice cover. Thus, a better understanding of the relative contribution of benthic and pelagic components in benthic food webs in the Arctic is needed. In this study, a multi-biomarker approach (stable isotopes, fatty acid trophic markers, and compound-specific stable isotope analysis) was applied to link potential sources of carbon, including particulate organic matter from subsurface and bottom waters, sediment organic matter, and 6 macroalgal species to the diet of the bivalve <em>Astarte elliptica</em> collected below the euphotic zone in a sub-Arctic fjord (Kobbefjord, Greenland). Results showed that <em>A. elliptica</em> feeds on particulate and sediment organic matter and that brown macroalgae significantly support the Arctic benthic food web. Multi-biomarker approaches can be used to determine the diet of benthic organisms and track temporal variability in sources of food. It therefore appears to be an interesting method to study food regime strategies in response to changing primary production dynamics.</p>
},
	author = {Gaillard, B and Tarik Meziane and R{\'e}jean Tremblay and P Archambault and Blicher, M E and Laurent Chauvaud and Rysgaard, S and Fr{\'e}d{\'e}ric Olivier}
}
@article {8571,
	title = {Marine Mammals Exploring the Oceans Pole to Pole: A Review of the MEOP Consortium},
	journal = {Oceanography},
	volume = {30},
	year = {2017},
	month = {Jan-06-2017},
	pages = {132 - 138},
	issn = {10428275},
	doi = {10.5670/oceanog10.5670/oceanog.2017.234},
	url = {https://tos.org/oceanography/},
	author = {Treasure, Anne and Roquet, Fabien and Ansorge, Isabelle and Bester, Marth{\'a}n and Boehme, Lars and Bornemann, Horst and Charrassin, Jean-Beno{\^\i}t and Chevallier, Damien and Costa, Daniel and Fedak, Mike and Guinet, Christophe and Hammill, Mike and Harcourt, Robert and Hindell, Mark and Kovacs, Kit and Lea, Mary-Anne and Lovell, Phil and Lowther, Andrew and Lydersen, Christian and McIntyre, Trevor and McMahon, Clive and Muelbert, M{\^o}nica and Nicholls, Keith and Picard, Baptiste and Reverdin, Gilles and Trites, Andrew and Williams, Guy and de Bruyn, P.J. Nico}
}
@article {5231,
	title = {Mercury contamination level and speciation inventory in Lakes Titicaca and Uru-Uru (Bolivia): Current status and future trends},
	journal = {Environmental Pollution},
	volume = {231, Part 1},
	year = {2017},
	pages = {262 - 270},
	abstract = {<p>Aquatic ecosystems of the Bolivian Altiplano (\~{}3800 m a.s.l.) are characterized by extreme hydro-climatic constrains (e.g., high UV-radiations and low oxygen) and are under the pressure of increasing anthropogenic activities, unregulated mining, agricultural and urban development. We report here a complete inventory of mercury (Hg) levels and speciation in the water column, atmosphere, sediment and key sentinel organisms (i.e., plankton, fish and birds) of two endorheic Lakes of the same watershed differing with respect to their size, eutrophication and contamination levels. Total Hg (THg) and monomethylmercury (MMHg) concentrations in filtered water and sediment of Lake Titicaca are in the lowest range of reported levels in other large lakes worldwide. Downstream, Hg levels are 3-10 times higher in the shallow eutrophic Lake Uru-Uru than in Lake Titicaca due to high Hg inputs from the surrounding mining region. High percentages of MMHg were found in the filtered and unfiltered water rising up from \&lt;1 to \~{}50\% THg from the oligo/hetero-trophic Lake Titicaca to the eutrophic Lake Uru-Uru. Such high \%MMHg is explained by a high in situ MMHg production in relation to the sulfate rich substrate, the low oxygen levels of the water column, and the stabilization of MMHg due to abundant ligands present in these alkaline waters. Differences in MMHg concentrations in water and sediments compartments between Lake Titicaca and Uru-Uru were found to mirror the offset in MMHg levels that also exist in their respective food webs. This suggests that in situ MMHg baseline production is likely the main factor controlling MMHg levels in fish species consumed by the local population. Finally, the increase of anthropogenic pressure in Lake Titicaca may probably enhance eutrophication processes which favor MMHg production and thus accumulation in water and biota.</p>
},
	keywords = {Titicaca},
	issn = {0269-7491},
	doi = {https://doi.org/10.1016/j.envpol.2017.08.009},
	url = {https://www.sciencedirect.com/science/article/pii/S0269749117320572},
	author = {S. Gu{\'e}dron and D. Point and D. Acha and S. Bouchet and P.A. Baya and E. Tessier and M. Monperrus and C.I. Molina and A. Groleau and Laurent Chauvaud and J. Thebault and E. Amice and L. Alanoca and C. Duwig and G. Uzu and Lazzaro, Xavier and A. Bertrand and S. Bertrand and C. Barbraud and K. Delord and Gibon, Francois-Marie and C. Ibanez and M. Flores and P. Fernandez Saavedra and M.E. Ezpinoza and C. Heredia and F. Rocha and C. Zepita and D. Amouroux}
}
@article {G{\'e}rard20172211,
	title = {Metazoan parasite communities in Alosa alosa (Linnaeus, 1758) and Alosa fallax (Lac{\'e}p{\`e}de, 1803) (Clupeidae) from North-East Atlantic coastal waters and connected rivers},
	journal = {Parasitology Research},
	volume = {116},
	number = {8},
	year = {2017},
	note = {cited By 1},
	pages = {2211-2230},
	doi = {10.1007/s00436-017-5525-8},
	url = {https://link.springer.com/article/10.1007\%2Fs00436-017-5525-8},
	author = {G{\'e}rard, C. and Herv{\'e}, M. and Gay, M. and Bourgau, O. and Eric Feunteun and Anthony Acou and R{\'e}veillac, E.}
}
@article {5560,
	title = {Morphodynamics of an eroding beach and foredune in the Mekong River delta: Implications for deltaic shoreline change},
	journal = {Continental Shelf Research},
	volume = {147},
	year = {2017},
	pages = {155 - 164},
	abstract = {<p>River delta shorelines composed of sand may be characterized by complex spatial and temporal patterns of erosion and accretion even when sand supply is readily available. This is especially the case for deltas with multiple mouths subject to significant wave and tide influence. High-resolution topographical and wave and current measurements were conducted from 2010 to 2012 at Ba D{\^o}ng beach, a popular resort located on the largest of the multiple inter-distributary plains of the Mekong River delta. Ba D{\^o}ng beach is a mesotidal, multiple bar-trough system. The upper beach corresponds to the current active beach ridge in the sequence of ridges that have marked the progradation of the inter-distributary delta plains, and is capped by a low foredune that protects villages and agricultural land from marine flooding. During the low river-flow season, the beach is characterized by Northeast monsoon waves and strong longshore currents that transport sediment towards the southwest. Weaker longshore currents towards the northeast are generated by Southwest monsoon waves during the high river-flow season. Ba D{\^o}ng beach underwent strong erosion between 2010 and 2012, following a phase of massive accretion. In 2012, this erosion resulted in breaching of the foredune, contributing to concerns that the Mekong delta had become vulnerable to retreat. The local erosion at Ba D{\^o}ng needs to be considered, however, in the broader context of delta shoreline morphodynamics, which involves space- and time-varying patterns of beach accretion and erosion. These patterns are the present expressions of plan-view beach-ridge morphology in the delta, which is characterized by flaring and truncations that reflect changing beach morphodynamics in the course of deltaic progradation. We surmise that these patterns are related to complex interactions involving river water and sediment discharge, waves and wave-generated longshore currents, tidal currents, and shoreline orientation.</p>
},
	keywords = {Asian monsoon waves, Beach morphodynamics, Beach ridges, Delta erosion and accretion, Mekong delta},
	issn = {0278-4343},
	doi = {https://doi.org/10.1016/j.csr.2017.06.018},
	url = {http://www.sciencedirect.com/science/article/pii/S0278434316305271},
	author = {E.J. Anthony and P. Dussouillez and Franck Dolique and M. Besset and G. Brunier and V.L. Nguyen and M. Goichot}
}
@article {4724,
	title = {Multi-approach analysis to assess diet of harbour porpoises Phocoena phocoena in the southern North Sea},
	journal = {Marine Ecology and Progress Series},
	volume = {563},
	year = {2017},
	month = {01/2017},
	pages = {249-259},
	abstract = {<p>Over the past decade, the distribution of harbour porpoises Phocoena phocoena has undergone a southward shift in the North Sea, which has led to an increase in the number of stranded porpoises in its southern part. Since the changes in distribution and relative abundance of porpoises may be linked to the changes in prey availability, the aim of the present work was to investigate whether any changes in the feeding habits of harbour porpoises along the North Sea occurred in the past decade. The diet of harbour porpoises stranded along the southern North Sea (northern France and Belgian coast) was assessed through 3 complementary methods: stomach content analysis, stable isotopes (carbon and nitrogen) analysis determined from muscle samples, and fatty acids analysis determined from blubber samples. Fatty acid patterns and stable isotope values from 52 porpoises were compared to 14 potential prey species collected from the southern North Sea. Our results showed that the diet of porpoises along the southern North Sea comprises fish species that are among the most abundant and widely distributed in the area, except for the sardine Sardina pilchardus that appeared to be a new potential prey. Moreover, our results suggested that the decline in sandeel (Ammodytidae) in the northern parts of the North Sea along with the re-invasion of the southern North Sea by sardine species might affect the distribution of harbour porpoises.</p>
},
	author = {Mahfouz, C and Tarik Meziane and Henry, F and Abi-Ghanem, C and Spitz, J and Jauniaux, T and Bouveroux, T and Khalef, G}
}
@article {4756,
	title = {Nuclear and membrane progestin receptors in the European eel: characterization and expression in vivo through spermatogenesis},
	journal = {Comparative Biochemistry and Physiology, Part A},
	volume = {207},
	year = {2017},
	pages = {79-92},
	author = {Morini, Marina and Penaranda, David S and V{\'\i}lchez, M C and Nourizadeh-Lillabadi, R and Anne-Gaelle Lafont and Sylvie Dufour and Asturiano, J F and Weltzien, Finn-Arne and Perez, Luz}
}
@article {6902,
	title = {The Pax gene family: Highlights from cephalopods},
	journal = {PLOS ONE},
	volume = {12},
	year = {2017},
	month = {Feb-03-2017},
	pages = {e0172719},
	doi = {10.1371/journal.pone.017271910.1371},
	url = {https://dx.plos.org/10.1371/journal.pone.0172719},
	author = {Navet, Sandra and Buresi, Auxane and S{\'e}bastien Baratte and Aude Andouche and Laure Bonnaud-Ponticelli and Yann Bassaglia},
	editor = {Schubert, Michael}
}
@article {5175,
	title = {Pollution at Cohana Bay, Lake Titicaca (Bolivia): challenges and opportunities to promote its recovery},
	journal = {Ecología en Bolivia},
	volume = {52},
	year = {2017},
	month = {September 2017},
	pages = {65-76},
	issn = {1605-2528},
	author = {Molina, Carlos I and Lazzaro, Xavier and Gu{\'e}dron, S and Dar{\'\i}o Ach{\'a}}
}
@article {7512,
	title = {Revision of the species complex{\textquoteright}Neritina pulligera{\textquoteright}(Gastropoda, Cyclonetimorpha: Neritidae) using taxonomy and barcoding},
	journal = {Vie et Milieu / Life \& Environment},
	volume = {67},
	year = {2017},
	month = {2017},
	pages = {149-161},
	author = {Ahmed Abdou and Ren{\'e} Galzin and Clara Lord and Denys, Ga{\"e}l PJ and Philippe Keith}
}
@article {6811,
	title = {Saving Our Marine Archives},
	journal = {Eos},
	year = {2017},
	month = {Dec-02-2018},
	doi = {10.1029/2017EO068159},
	url = {https://eos.org/project-updates/saving-our-marine-archives},
	author = {Dassi{\'e}, Emilie and DeLong, Kristine and Kilbourne, Hali and Williams, Branwen and Abram, Nerilie and Brenner, Logan and Brahmi, Chlo{\'e} and Cobb, Kim and Corr{\`e}ge, Thierry and Dissard, Delphine and Emile-Geay, Julien and Evangelista, Heitor and Evans, Michael and Farmer, Jesse and Felis, Thomas and Gagan, Michael and Gillikin, David and Goodkin, Nathalie and Khodri, Myriam and Lavagnino, Ana and LaVigne, Mich{\`e}le and Claire E. Lazareth and Linsley, Braddock and Lough, Janice and McGregor, Helen and Nurhati, Intan and Ouellette, Gilman and Perrin, Laura and Raymo, Maureen and Rosenheim, Brad and Sandstrom, Michael and Sch{\"o}ne, Bernd and Sifeddine, Abdelfettah and Stevenson, Samantha and Thompson, Diane and Waite, Amanda and Wanamaker, Alan and Wu, Henry}
}
@article {5000,
	title = {Seasonal and latitudinal variation in seagrass mechanical traits across Europe: The influence of local nutrient status and morphometric plasticity},
	journal = {Limnology and Oceanography},
	year = {2017},
	abstract = {<p>Seagrasses are marine flowering plants distributed worldwide. They are however threatened, mostly due to the increase of human activities. Seagrasses have the capacity to adapt their morphological, physiological, and mechanical traits to their local conditions. Mechanical traits have been identified as a good tool to investigate a plant-species capacity to withstand physical forces or disturbances but are still sparsely studied in seagrasses. With this study, we aimed to assess how the mechanical traits of a broadly spread seagrass species vary along a latitudinal gradient in relation to its morphometric plasticity and nutrient status. We found that seagrasses acclimate their mechanical traits in relation to their physiological or morphological traits, both over the growing season and across a latitudinal range: leaves were weaker and thinner in northern areas, particularly at the end of the growing season. Besides the influence of the latitudinal gradient, leaf mechanical strength and stiffness were both strongly affected by their morphometric plasticity. Moreover, we showed that leaves mechanical traits change depending on their nutrient status: leaves were stronger and stiffer in oligotrophic conditions as compared to more eutrophic conditions. Thus, our results imply that, under eutrophication, leaves become weaker and thus more vulnerable to physical forces. This vulnerability is higher in the north at the end of the growing season. The latter is consistent with the more ephemeral character of northern seagrass meadows, in contrast to the more evergreen southern meadows.</p>
},
	doi = {10.1002/lno.10611},
	url = {http://onlinelibrary.wiley.com/doi/10.1002/lno.10611/full},
	author = {L.M. Soissons and M.M. van Katwijk and G. Peralta and F.G. Brun and P.G. Cardoso and T.F. Grilo and B. Ondiviela and M. Recio and M. Valle and J.M. Garmendia and F. Ganthy and I. Auby and L. Rigouin and Laurent Godet and J{\'e}r{\^o}me Fournier and Nicolas Desroy and L. Barill{\'e} and P. Kadel and R. Asmus and P.M.J. Herman and T.J. Bouma}
}
@article {5968,
	title = {{\textdagger}Sorbinicharax verraesi: An unexpected case of a benthic fish outside Acanthomorpha in the Upper Cretaceous of the Tethyan Sea},
	journal = {PLOS ONE},
	volume = {12},
	year = {2017},
	month = {08},
	pages = {1-15},
	abstract = {<p>{\textdagger}Sorbinicharax verraesi is a marine teleostean fish from the Upper Cretaceous of Nard{\`o} (Italy). It was first attributed to the otophysan order Characiformes, which represents potential evidence for the controversial marine origin of the clade. Through a review of all the available material, we demonstrate that this species is not an otophysan since it lacks key structures that would allow for its inclusion in this group. {\textdagger}Sorbinicharax has a body shape that recalls ground fishes classically assigned to Acanthomorpha. However, no unambiguous feature allows us to relate it to this clade. In fact, the presence of cellular bony tissue supports its exclusion from Eurypterygii. Since no feature permits the definitive attribution of {\textdagger}Sorbinicharax to any teleost group, it remains as Teleostei incertae sedis. We infer that the morphology of {\textdagger}Sorbinicharax indicates a benthic ecology. It displays: an anteriorly wide body with enlarged ribs; large pectoral fins, while anal and dorsal fins are reduced; a large head measuring {\textonequarter} of the total body length; and a mouth opening dorsally in a high position. Such morphology was so far undescribed in Nardo. It is surprisingly displayed by a non-eurypterygian teleost fish which means by a fish which does not belong to the clades that diversify since the upper Cretaceous and include the extant families that show ground ecomorphologies.</p>
},
	doi = {10.1371/journal.pone.0183879},
	url = {https://doi.org/10.1371/journal.pone.0183879},
	author = {Mayrinck, D. and Brito, Paulo M. and Meunier, Francois J. and Alvarado-Ortega, J. and Otero, Olga}
}
@article {6827,
	title = {Spatial overlaps of foraging and resting areas of black-legged kittiwakes breeding in the English Channel with existing marine protected areas},
	journal = {Marine biology},
	volume = {164},
	year = {2017},
	pages = {119},
	doi = {https://doi.org/10.1007/s00227-017-3151-8},
	url = {https://link.springer.com/article/10.1007/s00227-017-3151-8$\#$citeas},
	author = {Ponchon, Aurore and Aulert, Christophe and Le Guillou, Gilles and Gallien, Fabrice and Clara P{\'e}ron and Gr{\'e}millet, David}
}
@article {4718,
	title = {Synchronism of naupliar development of Sacculina carcini Thompson, 1836 (Pancrustacea, Rhizocephala) revealed by precise monitoring},
	journal = {Helgoland Marine Research},
	volume = {70},
	year = {2017},
	month = {dec 2016},
	pages = {1-11},
	abstract = {<p>Sacculina carcini is member of a highly-specialized group of parasitic cirripeds (Rhizocephala) that use crabs (Carcinus maenas) as hosts to carry out the reproductive phase of their life cycle. We describe the naupliar development of S. carcini Thompson, 1836 from a very precise monitoring of three different broods from three specimens. Nauplii were sampled every 4 h, from the release of the larvae until the cypris stage. Larval development, from naupliar instar 1 to the cypris stage, lasts 108 h at 18 {\textdegree}C. A rigorous sampling allowed us to describe an additional intermediate naupliar instar, not described previously. Naupliar instars are renumbered from 1 to 5. Nauplius 1 (N1) larvae hatch in the interna; N2 are released from the interna and last between 12 and 16 h; N3 appear between 12 and 16 h after release; N4 appear between 28 and 32 h; and N5 appear between 44 and 48 h. The cypris stage appears between 108 and 112 h. The redescribed morphologies allowed us to identify new characters. Antennular setation discriminates naupliar instars 3, 4 and 5. Telson and furca morphologies discriminate all naupliar instars. Furthermore, we demonstrate that the speed of larval development is similar within a single brood and between broods from different specimens, suggesting synchronization of larval development. From precise monitoring of broods every 4 h, we demonstrate that the life cycle of S. carcini includes five instars of naupliar larvae instead of four. The morphological characters of the larvae discriminate these naupliar instars and allow the identification of S. carcini from other Rhizocephala species. S. carcini larvae develop synchronously. Consequently, they might be an informative model to study larval development in crustaceans.</p>
},
	author = {Tredez, Fabien and Nicolas Rabet and Bellec, L and Audebert, Fabienne}
}
@article {Houssard201749,
	title = {Trophic position increases with thermocline depth in yellowfin and bigeye tuna across the Western and Central Pacific Ocean},
	journal = {Progress in Oceanography},
	volume = {154},
	year = {2017},
	note = {cited By 12},
	pages = {49-63},
	doi = {10.1016/j.pocean.2017.04.008},
	url = {https://www.sciencedirect.com/science/article/pii/S007966111630177X},
	author = {Houssard, P. and Lorrain, A. and Tremblay-Boyer, L. and Allain, V. and Graham, B.S. and Menkes, C.E. and Pethybridge, H. and Couturier, L.I.E. and Point, D. and Leroy, Bruno and Receveur, A. and Hunt, B.P.V. and Vourey, E. and Bonnet, S. and Rodier, M. and Raimbault, P. and Eric Feunteun and Kuhnert, P.M. and Munaron, J.-M. and Lebreton, B. and Otake, T. and Letourneur, Y.}
}
@article {6800,
	title = {Variable selection and accurate predictions in habitat modelling: a shrinkage approach},
	journal = {Ecography},
	volume = {40},
	year = {2017},
	pages = {549-560},
	abstract = {Habitat modelling is increasingly relevant in biodiversity and conservation studies. A typical application is to predict potential zones of specific conservation interest. With many environmental covariates, a large number of models can be investigated but multi-model inference may become impractical. Shrinkage regression overcomes this issue by dealing with the identification and accurate estimation of effect size for prediction. In a Bayesian framework we investigated the use of a shrinkage prior, the Horseshoe, for variable selection in spatial generalized linear models (GLM). As study cases, we considered 5 datasets on small pelagic fish abundance in the Gulf of Lion (Mediterranean Sea, France) and 9 environmental inputs. We compared the predictive performances of a simple kriging model, a full spatial GLM model with independent normal priors for regression coefficients, a full spatial GLM model with a Horseshoe prior for regression coefficients and 2 zero-inflated models (spatial and non-spatial) with a Horseshoe prior. Predictive performances were evaluated by cross-validation on a hold-out subset of the data: models with a Horseshoe prior performed best, and the full model with independent normal priors worst. With an increasing number of inputs, extrapolation quickly became pervasive as we tried to predict from novel combinations of covariate values. By shrinking regression coefficients with a Horseshoe prior, only one model needed to be fitted to the data in order to obtain reasonable and accurate predictions, including extrapolations.},
	doi = {10.1111/ecog.01633},
	url = {https://onlinelibrary.wiley.com/doi/full/10.1111/ecog.01633},
	author = {Authier, Matthieu and Saraux, Claire and Clara P{\'e}ron}
}
@article {5022,
	title = {Visual census, photographic records and the trial of a video network provide first evidence of the elusive Sicyopterus cynocephalus in Australia},
	journal = {Cybium},
	volume = {41},
	year = {2017},
	month = {06/2017},
	pages = {117-125},
	abstract = {<p>Opportunistic encounters with an elusive large-bodied sicydiine goby in a single plunge pool led us to photograph and deploy three video cameras to detect individuals in that pool. Subsequently, a catchment-wide search indicated that the species, eventually identified as Sicyopterus cynocephalus, was confined to the single pool where it was originally detected. A network of ten video cameras was then deployed to estimate the number of individuals of that species and of a congener, S. lagocephalus, by non-destructive means. This study provides the first record of S. cynocephalus in Australia, and showcases the synergy of active snorkel searches and a remote camera network in counting individuals of two sympatric species of Sicyopterus.</p>
},
	keywords = {Australia, Coastal stream, Elusive species, First record, Gobiidae, Sicyopterus cynocephalus, Underwater video, Visual census},
	author = {Ebner, Brendan C and Donaldson, James and Allen, Gerald and Philippe Keith}
}
@article {5045,
	title = {What Is Marine Biodiversity? Towards Common Concepts and Their Implications for Assessing Biodiversity Status. Front},
	journal = {Bridging the Gap Between Policy and Science in Assessing the Health Status of Marine Ecosystems},
	volume = {3},
	year = {2017},
	pages = {377},
	author = {Cochrane, SKJ and Andersen, JH and Berg, T and Hugues Blanchet and Borja, A and Carstensen, J and Elliott, M and Hummel, H and Nathalie Niquil and Renaud, PE}
}
@article {4627,
	title = {Association of a Specific Algal Group with Methylmercury Accumulation in Periphyton of a Tropical High-Altitude Andean Lake},
	journal = {Archives of Environmental Contamination and Toxicology},
	year = {2016},
	pages = {1{\textendash}10},
	abstract = {<p>Periphyton relevance for methylmercury (MeHg) production and accumulation are now well known in aquatic ecosystems. Sulfate-reducing bacteria and other microbial groups were identified as the main MeHg producers, but the effect of periphyton algae on the accumulation and transfer of MeHg to the food web remains little studied. Here we investigated the role of specific groups of algae on MeHg accumulation in the periphyton of Schoenoplectus californicus ssp. (Totora) and Myriophyllum sp. in Uru Uru, a tropical high-altitude Bolivian lake with substantial fishing and mining activities accruing around it. MeHg concentrations were most strongly related to the cell abundance of the Chlorophyte genus Oedogonium (r 2\&nbsp;=\&nbsp;0.783, p\&nbsp;=\&nbsp;0.0126) and to no other specific genus despite the presence of other 34 genera identified. MeHg was also related to total chlorophyll-a (total algae) (r 2\&nbsp;=\&nbsp;0.675, p\&nbsp;=\&nbsp;0.0459), but relations were more significant with chlorophyte cell numbers, chlorophyll-b (chlorophytes), and chlorophyll-c (diatoms and dinoflagellates) (r 2\&nbsp;=\&nbsp;0.72, p\&nbsp;=\&nbsp;0.028, r 2\&nbsp;=\&nbsp;0.744, p\&nbsp;=\&nbsp;0.0214, and r 2\&nbsp;=\&nbsp;0.766, p\&nbsp;=\&nbsp;0.0161 respectively). However, Oedogonium explains most variability of chlorophytes and chlorophyll-c (r 2\&nbsp;=\&nbsp;0.856, p\&nbsp;=\&nbsp;\&lt;\&nbsp;0.001 and r 2\&nbsp;=\&nbsp;0.619, p\&nbsp;=\&nbsp;0.002, respectively), suggesting it is the most influential group for MeHg accumulation and periphyton algae composition at this particular location and given time.</p>
},
	issn = {1432-0703},
	doi = {10.1007/s00244-016-0324-2},
	url = {http://dx.doi.org/10.1007/s00244-016-0324-2},
	author = {Lanza, William G. and Dar{\'\i}o Ach{\'a} and Point, David and Masbou, Jeremy and Alanoca, Lucia and Amouroux, David and Lazzaro, Xavier}
}
@article {4246,
	title = {Calcium Deposits in the Crayfish, Cherax quadricarinatus: Microstructure Versus Elemental Distribution},
	journal = {Microscopy and Microanalysis},
	volume = {22},
	year = {2016},
	pages = {22-38},
	type = {Journal Article},
	author = {Gilles Luquet and Yannicke Dauphin and Aline Percot and Murielle Salom{\'e} and Andreas Ziegler and Maria S. Fernandez and Jos{\'e} L. Arias}
}
@article {4041,
	title = {The Channel ecosystem, a cross-roads of anthropogenic pressures and scientific studies: Lessons learned from the European \{INTERREG\} \{IV\} projects (2009{\textendash}2015)},
	journal = {Marine Policy},
	volume = {63},
	year = {2016},
	month = {11/2015},
	pages = {158 - 165},
	author = {L Evariste and Pascal Claquin and Jean-Paul Robin and Arnaud Auber and Abigail McQuatters-Gollop and Jean-Claude Dauvin}
}
@article {4377,
	title = {Characterisation of the mantle transcriptome and biomineralisation genes in the blunt-gaper clam, Mya truncata},
	journal = {Marine Genomics},
	volume = {27},
	year = {2016},
	pages = {47 - 55},
	abstract = {<p>Abstract Members of the Myidae family are ecologically and economically important, but there is currently very little molecular data on these species. The present study sequenced and assembled the mantle transcriptome of Mya truncata from the North West coast of Scotland and identified candidate biomineralisation genes. RNA-Seq reads were assembled to create 20,106 contigs in a de novo transciptome, 18.81\% of which were assigned putative functions using \{BLAST\} sequence similarity searching (cuttoff E-value 1E {\quotesinglbase}{\`a}{\'\i} 10). The most highly expressed genes were compared to the Antarctic clam (Laternula elliptica) and showed that many of the dominant biological functions (muscle contraction, energy production, biomineralisation) in the mantle were conserved. There were however, differences in the constitutive expression of heat shock proteins, which were possibly due to the M. truncata sampling location being at a relatively low latitude, and hence relatively warm, in terms of the global distribution of the species. Phylogenetic analyses of the Tyrosinase proteins from M. truncata showed a gene expansion which was absent in L. elliptica. The tissue distribution expression patterns of putative biomineralisation genes were investigated using quantitative PCR, all genes showed a mantle specific expression pattern supporting their hypothesised role in shell secretion. The present study provides some preliminary insights into how clams from different environments {\quotesinglbase}{\"A}{\`\i} temperate versus polar {\quotesinglbase}{\"A}{\`\i} build their shells. In addition, the transcriptome data provides a valuable resource for future comparative studies investigating biomineralisation.</p>
},
	keywords = {shell},
	issn = {1874-7787},
	doi = {http://dx.doi.org/10.1016/j.margen.2016.01.003},
	url = {http://www.sciencedirect.com/science/article/pii/S1874778716300034},
	author = {Victoria A. Sleight and Michael A.S. Thorne and Lloyd S. Peck and Arivalagan, Jaison and Berland, Sophie and Marie, Arul and Melody S. Clark}
}
@article {4494,
	title = {Coleoid cephalopod color patterns: Adult skin structures and their emergence during development in sepia officinalis},
	journal = {Vie et Milieu},
	volume = {66},
	year = {2016},
	month = {May 2016},
	pages = {43-55},
	abstract = {<p class="rtejustify">The skin of coleo{\"\i}d cephalopods is a complex tissue that allows the rapid display of numerous changing or static patterns for communication and camouflage. Chromatophores, iridophores, and leucophores are responsible for these properties. Chromatophores are pigmentary neuromuscular organs, directly controlled by the brain. Iridophores are iridescent cells that use platelets of proteins that are arranged into repetitive structures (iridosomes) to produce iridescence; and leucophores are perfect reflectors. The same family of protein (reflectins), initially characterized in iridophores, have been detected (at different levels) in the three structures. Here we review the current knowledge of adult skin and its nervous control and describe the establishment of chromatophores and iridophores during embryonic development in <em>Sepia officinalis</em>.</p>
},
	keywords = {Cephalopods, Chromatophores, color pattern, Development, iridophores},
	author = {Aude Andouche and Yann Bassaglia}
}
@article {4509,
	title = {A comparison of techniques for studying oogenesis in the European eel Anguilla anguilla.},
	journal = {J Fish Biol},
	year = {2016},
	month = {2016 Aug 8},
	abstract = {<p>A multi-technique approach was used to study the changes occurring in European eel Anguilla anguilla ovaries during hormonally-induced vitellogenesis. Aside from classic techniques used to monitor the vitellogenic process, such as ovary histology, fat content analysis, sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and vitellogenin enzyme linked immunosorbent assay (ELISA), a new technique, Fourier-transform infrared (FT-IR) microspectroscopy, was used to analyse A. anguilla ovaries. The results from the different techniques provided different ways of approaching the same process. Although it is considered a time consuming approach, of all the employed techniques, histology provided the most direct evidences about vitellogenesis. SDS-PAGE and ELISA were also useful for studying vitellogenesis, whereas fat analysis cannot be used for this purpose. The FT-IR analysis provided a representative IR spectrum for each ovarian stage (previtellogenic stage, early vitellogenic stage, mid-vitellogenic stage and late vitellogenic stage), demonstrating that it is a valid method able to illustrate the distribution of the oocytes within the ovary slices. The chemical maps obtained confirmed changes in lipid concentrations and revealed their distribution within the oocytes at different maturational stages. When the results and the accuracy of the FT-IR analysis were compared with those of the traditional techniques commonly used to establish the vitellogenic stage, it became evident that FT-IR is a useful and reliable tool, with many advantages, including the fact that it requires little biological material, the costs involved are low, analysis times are short and last but not least, the fact that it offers the possibility of simultaneously analysing various biocomponents of the same oocyte.</p>
},
	issn = {1095-8649},
	doi = {10.1111/jfb.13103},
	author = {Mazzeo, I and Giorgini, E and Gioacchini, G and Maradonna, F and V{\'\i}lchez, M C and Sylvie Baloche and Sylvie Dufour and P{\'e}rez, L and Carnevali, O and Asturiano, J F}
}
@article {5740,
	title = {Development of an ecotoxicological protocol for the deep-sea fauna using the hydrothermal vent shrimp Rimicaris exoculata},
	journal = {Aquatic Biology},
	volume = {175},
	year = {2016},
	pages = {277-285},
	doi = {https://doi.org/10.1016/j.aquatox.2016.03.024},
	author = {Auguste, M and Mestre, N and Rocha, T and Cardoso, C and Cueff-Gauchard, V and Le Bloa, S and Cambon-Bonavita, M-A and Bruce Shillito and Magali Zbinden and Juliette Ravaux and Bebianno, M}
}
@article {6812,
	title = {Development of laser ablation multi-collector inductively coupled plasma mass spectrometry for boron isotopic measurement in marine biocarbonates: new improvements and application to a modern <i>Porites</i>               coral},
	journal = {Rapid Communications in Mass Spectrometry},
	volume = {30},
	year = {2016},
	month = {Mar-02-2017},
	pages = {359 - 371},
	abstract = {RATIONALE: Laser Ablation coupled to Multi-Collector Inductively Coupled Plasma Mass Spectrometry (LA-MCICPMS)<br />
is a powerful tool for the high-precision measurement of the isotopic ratios of many elements in geological<br />
samples, with the isotope ratio (11B/10B) of boron being used as an indicator of the pH of oceanic waters. Most geological<br />
samples or standards are polished and ablation occurs on flat surfaces. However, the shape and the irregularities of<br />
marine biocarbonates (e.g., corals, foraminifera) can make precise isotopic measurements of boron difficult. Even after<br />
polishing, the porosity properties and the presence of holes or micro-fractures affect the signal and the isotopic ratio<br />
when ablating the material, especially in raster mode.<br />
METHODS: The effect of porosity and of the crater itself on the 11B signal and the isotopic ratio acquired by LA-MCICPMS<br />
in both raster and spot mode was studied. Characterization of the craters was then performed with an optical<br />
profilometer to determine their shapes and depths. Surface state effects were examined by analyzing the isotopic<br />
fractionation of boron in silicate (NIST-SRM 612 and 610 standards) and in carbonate (corals).<br />
RESULTS: Surface irregularities led to a considerable loss of signal when the crater depth exceeded 20 μm. The stability<br />
and precision were degraded when ablation occurred in a deep cavity. The effect of laser focusing and of blank correction<br />
was also highlighted and our observations indicate that the accuracy of the boron isotopic ratio does not depend on the<br />
shape of the surface. After validation of the analytical protocol for boron isotopes, a raster application on a Porites coral,<br />
which grew for 18 months in an aquarium after field sampling, was carried out.<br />
CONCLUSIONS: This original LA-MC-ICPMS study revealed a well-marked boron isotope ratio temporal variability,<br />
probably related to growth rate and density changes, irrespective of the pH of the surrounding seawater.},
	doi = {10.1002/rcm.7448},
	url = {http://doi.wiley.com/10.1002/rcm.7448},
	author = {Thil, Fran{\c c}ois and Blamart, Dominique and Assailly, Caroline and Claire E. Lazareth and Leblanc, Thierry and Butsher, John and Douville, Eric}
}
@article {4493,
	title = {A developmental table of embryogenesis in Sepia officinalis},
	journal = {Vie et Milieu},
	volume = {66},
	year = {2016},
	month = {May 2016},
	pages = {11-23},
	abstract = {<p>The development of several cephalopods among them Sepia officinalis (Linnaeus, 1758) has been very carefully described by Naef in the early 20th century. Here an illustrated developmental table of Sepia officinalis is proposed with a morphological description of each stage. The 30 stages are grouped into five steps of development: cleavage (stages 1 to 9), gastrulation (stages 10 to 13), organogenesis, plane phase (stages 14 to 18), organogenesis, extension phase (stages 19 to 22) and organogenesis, growth phase (stages 23 to 30), when the embryo has acquired the general adult conformation. For each stage, morphological identification criteria are proposed in order that this table is used as a lab tool for cephalopod researchers interested in development.</p>
},
	keywords = {Cephalopoda, Development, Embryology, Sepia officinalis},
	issn = {02408759},
	author = {Boletzky, S.V and Aude Andouche and Laure Bonnaud-Ponticelli}
}
@article {Boulenger2016281,
	title = {Difference in factors explaining growth rate variability in European eel subpopulations: The possible role of habitat carrying capacity},
	journal = {Ecology of Freshwater Fish},
	volume = {25},
	number = {2},
	year = {2016},
	note = {cited By 1},
	pages = {281-294},
	doi = {10.1111/eff.12209},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12209},
	author = {Boulenger, C. and Crivelli, A.J. and Charrier, F. and Roussel, J.-M. and Eric Feunteun and Anthony Acou}
}
@article {Trancart20169,
	title = {Difference in responses of two coastal species to fluctuating salinities and temperatures: Potential modification of specific distribution areas in the context of global change},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {173},
	year = {2016},
	note = {cited By 3},
	pages = {9-15},
	doi = {10.1016/j.ecss.2016.02.012},
	url = {https://www.sciencedirect.com/science/article/pii/S0272771416300555},
	author = {Thomas Trancart and Eric Feunteun and Lefran{\c c}ois, C. and Anthony Acou and Boinet, C. and Alexandre Carpentier}
}
@article {4530,
	title = {Differential protein expression during sperm maturation and capacitation in an hermaphroditic bivalve, Pecten maximus (Linnaeus, 1758)},
	journal = {Journal of Molluscan Studies},
	year = {2016},
	month = {09/2016},
	pages = {1-10},
	author = {Boonmee, A and Clothilde Heude-Berthelin and Kingtong, S and Pauletto, M and Bernay, B and Adeline, B and Suquet, M and Pascal Sourdaine and Kristell Kellner-Cousin}
}
@article {Besson2016779,
	title = {Disrupted downstream migration behaviour of European silver eels (Anguilla anguilla, L.) in an obstructed river},
	journal = {Environmental Biology of Fishes},
	volume = {99},
	number = {10},
	year = {2016},
	note = {cited By 13},
	pages = {779-791},
	doi = {10.1007/s10641-016-0522-9},
	url = {https://link.springer.com/article/10.1007/s10641-016-0522-9},
	author = {Besson, M.L. and Thomas Trancart and Anthony Acou and Charrier, F. and Mazel, V. and Legault, A. and Eric Feunteun}
}
@article {4413,
	title = {Effects of an environmentally relevant concentration of diuron on oyster genitors during gametogenesis: responses of early molecular and cellular markers and physiological impacts.},
	journal = {Environ Sci Pollut Res Int},
	volume = {23},
	year = {2016},
	month = {2016 Apr},
	pages = {8008-20},
	abstract = {<p>Genitors of the Pacific oyster Crassostrea gigas were submitted during gametogenesis to a short pulse exposure to the herbicide diuron at a realistic environmental concentration. Histological analysis showed no effect of diuron on gametogenesis course, sex ratio and reproductive effort. A non-significant increase in testosterone and progesterone levels was observed in genitors exposed to the herbicide. At cell level, diuron exposure was shown to modulate the phagocytic activity of circulating hemocytes. The results of a transcriptional analysis showed that diuron affected the expression of genes belonging to functions known to play a major role during oyster gametogenesis such as gene transcription regulation, DNA replication and repair, DNA methylation and cytokinesis. Taking into account the results we previously obtained on the same genitors, this study showed a negative effect of diuron on oyster reproduction by inducing both structural and functional modifications of the DNA.</p>
},
	issn = {1614-7499},
	doi = {10.1007/s11356-015-5969-2},
	author = {Akcha, F and Barranger, A and Bach{\`e}re, E and Clothilde Heude-Berthelin and Piquemal, D and Alonso, P and Sallan, R Rondon and Dimastrogiovanni, G and Porte, C and Menard, D and Szczybelski, A and Benabdelmouna, A and Auffret, M and Rouxel, J and Burgeot, T}
}
@article {4803,
	title = {Empirical observations of the spawning migration of European eels: The long and dangerous road to the Sargasso Sea.},
	journal = {Science Advances},
	year = {2016},
	abstract = {The spawning migration of the European eel (Anguilla anguilla\&nbsp;L.) to the Sargasso Sea is one of the greatest animal migrations. However, the duration and route of the migration remain uncertain. Using fishery data from 20 rivers across Europe, we show that most eels begin their oceanic migration between August and December. We used electronic tagging techniques to map the oceanic migration from eels released from four regions in Europe. Of 707 eels tagged, we received 206 data sets. Many migrations ended soon after release because of predation events, but we were able to reconstruct in detail the migration routes of \&gt;80 eels. The route extended from western mainland Europe to the Azores region, more than 5000 km toward the Sargasso Sea. All eels exhibited diel vertical migrations, moving from deeper water during the day into shallower water at night. The range of migration speeds was 3 to 47 km day-1. Using data from larval surveys in the Sargasso Sea, we show that spawning likely begins in December and peaks in February. Synthesizing these results, we show that the timing of autumn escapement and the rate of migration are inconsistent with the century-long held assumption that eels spawn as a single reproductive cohort in the springtime following their escapement. Instead, we suggest that European eels adopt a mixed migratory strategy, with some individuals able to achieve a rapid migration, whereas others arrive only in time for the following spawning season. Our results have consequences for eel management.},
	doi = {10.1126/sciadv.1501694},
	url = {https://advances.sciencemag.org/content/2/10/e1501694},
	author = {D. Righton and H. Westerberg and Eric Feunteun and F. Okland and P. Gargan and E. Amilhat and J. Metcalfe and J. Lobon-Cervia and N. Sj{\"o}berg and J. Simon and Anthony Acou and M. Vedor and A. Walker and Thomas Trancart and U Br{\"a}mick and K. Aarestrup}
}
@article {Boulenger2016947,
	title = {Factors determining survival of European eels in two unexploited sub-populations},
	journal = {Freshwater Biology},
	volume = {61},
	number = {6},
	year = {2016},
	note = {cited By 3},
	pages = {947-962},
	doi = {10.1111/fwb.12759},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/fwb.12759},
	author = {Boulenger, C. and Anthony Acou and Gimenez, O. and Charrier, F. and Tremblay, J. and Eric Feunteun}
}
@article {4340,
	title = {The fate of C4 and C3 macrophyte carbon in central Amazon floodplain waters: Insights from a batch experiment},
	journal = {Limnologica - Ecology and Management of Inland Waters},
	volume = {59},
	year = {2016},
	pages = {90-98},
	abstract = {<p>The central Amazon floodplains are particularly productive ecosystems, where a large diversity of organic carbon sources are available for aquatic organisms. Despite the fact that C4 macrophytes generally produce larger biomasses than C3 macrophytes, food webs in the central Amazon floodplains appear dominantly based on a C3 carbon source.</p>

<p>In order to investigate the respective fate and degradation patterns of C4 and C3 aquatic plant-derived material in central Amazon floodplains, we developed a 23-days batch experiment. Fatty acid and carbon concentrations as well as stable isotope compositions were monitored over time in 60\&nbsp;L tanks. These tanks contained Amazon water, with different biomasses of C3 and C4 macrophyte, representative of in situ densities occurring in central Amazon floodplains.</p>

<p>In the C4Paspalum repens treatments, organic (POC, DOC) and inorganic carbon (DIC) got rapidly enriched in 13C, whereas in the C3Salvinia auriculata treatments, POC and DOC showed little change in concentration and isotopic composition, and DIC got depleted in 13C. The contribution of P. repens to POC and DOC was estimated to reach up to 94.2 and 70.7\%, respectively. In contrast, no differences were reported between the C3S. auriculata and control treatments, an observation attributed to the lower C3 biomass encountered in the field, to a slower degradation rate of C3 compared to C4 compounds, and to similar isotopic compositions for river POC and DOC, and C3 compounds.</p>

<p>The 13C enrichments of POC, DOC, and DIC from P. repens treatments were attributed to an enhanced bacterially-mediated hydrolysis and mineralization of C4 material. Evolutions of bacterial abundance and branched fatty acid concentrations confirmed the role of heterotrophic microbial communities in the high P. repens decomposition rate. Our experiment highlights the predominant role of C4 aquatic plants, as a large source of almost entirely biodegradable organic matter available for heterotrophic activity and CO2 outgassing to the atmosphere.</p>
},
	keywords = {Central amazon, Degradation, fatty acids, Floodplains, Macrophytes, Stables isotopes},
	doi = {doi:10.1016/j.limno.2016.03.008},
	author = {Jean-Michel Mortillaro and Passarelli, C and Gwena{\"e}l Abril and C{\'e}dric Hubas and Luis Felipe Artigas and Marc F Benedetti and Najet Thiney and Moreira-Turcq, P and P{\'e}rez, M A and Vidal, L and Tarik Meziane}
}
@article {4226,
	title = {Geographic variation in stable isotopic and fatty acid composition of anguilliform leptocephali and particulate organic matter in the South Pacific},
	journal = {Marine Ecology and Progress Series},
	volume = {544},
	year = {2016},
	pages = {225-241},
	abstract = {<p>The feeding ecology of leptocephali has remained poorly understood because they apparently feed on particulate organic matter (POM), which varies in composition, and it is unclear which components of the POM they assimilate. The δ13C and δ15N stable isotope (SI) and fatty acid (FA) compositions of 3 families of leptocephali and POM were compared in 3 latitudinal current zones of the western South Pacific. The δ15N signatures of leptocephali and POM overlapped, with both having their lowest values in the southern current zone. POM in general (across all zones) contained 38 FAs and was rich in saturated FAs (SFA) (16:0, 18:0, 14:0), while leptocephali contained 50 FAs, with high proportions of 16:0, and higher contributions of 22:6ω3, 20:5ω3, 18:1ω9, 16:1ω7 and other FAs than found in the POM. Serrivomeridae leptocephali in the north had higher δ15N signatures and were also distinguished from Nemichthyidae and Muraenidae larvae by their FA compositions (higher SFAs, lower 22:6ω3 and 20:5ω3). Although SI signatures of the Serrivomeridae larvae did not clearly vary with size, 16:0 and 18:0 FA proportions decreased with increasing larval size, and 22:6ω3 and 16:1ω7 increased in larger larvae. Correspondences between the latitudinal variations in nitrogen SI signatures and FA compositions of POM with those of leptocephali and the presence of FA markers of both autotrophic and heterotrophic organisms were consistent with leptocephali feeding on POM. POM can contain various materials from primary producers and heterotrophic microorganisms, but differences in the SI signatures and FA compositions in leptocephali remain to be explained through further research.</p>
},
	keywords = {Leptocephali {\textperiodcentered} Fatty acids {\textperiodcentered} Stable isotopes {\textperiodcentered} Biomarkers {\textperiodcentered} Trophic ecology {\textperiodcentered} Oceanic currents},
	isbn = {doi:10.3354/meps11575 },
	author = {Li{\'e}nart, Camilla and Eric Feunteun and Miller, M J and Aoyama, J and Jean-Michel Mortillaro and C{\'e}dric Hubas and Kuroki, M and Watanabe, S and Christine Dupuy and Alexandre Carpentier and Otake, T and Tsukamoto, K and Tarik Meziane}
}
@article {5813,
	title = {{Global impacts of the 1980s regime shift}},
	journal = {Global Change Biology},
	volume = {22},
	year = {2016},
	abstract = {<p>{\textcopyright} 2016 John Wiley {\&amp;} Sons Ltd. Despite evidence from a number of Earth systems that abrupt temporal changes known as regime shifts are important, their nature, scale and mechanisms remain poorly documented and understood. Applying principal component analysis, change-point analysis and a sequential t-test analysis of regime shifts to 72 time series, we confirm that the 1980s regime shift represented a major change in the Earth{\textquoteright}s biophysical systems from the upper atmosphere to the depths of the ocean and from the Arctic to the Antarctic, and occurred at slightly different times around the world. Using historical climate model simulations from the Coupled Model Intercomparison Project Phase 5 (CMIP5) and statistical modelling of historical temperatures, we then demonstrate that this event was triggered by rapid global warming from anthropogenic plus natural forcing, the latter associated with the recovery from the El Chich{\'o}n volcanic eruption. The shift in temperature that occurred at this time is hypothesized as the main forcing for a cascade of abrupt environmental changes. Within the context of the last century or more, the 1980s event was unique in terms of its global scope and scale; our observed consequences imply that if unavoidable natural events such as major volcanic eruptions interact with anthropogenic warming unforeseen multiplier effects may occur.</p>
},
	keywords = {Climate, Earth systems, Global change, Regime shift, Statistical analysis, Time series, Volcanic forcing},
	issn = {13652486},
	doi = {10.1111/gcb.13106},
	author = {Philip Chris Reid and Renata E. Hari and Gr{\'e}gory Beaugrand and David M. Livingstone and Christoph Marty and Dietmar Straile and Jonathan Barichivich and Goberville, Eric and Rita Adrian and Yasuyuki Aono and Ross Brown and James Foster and Pavel Groisman and Pierre H{\'e}laou{\"e}t and Huang-Hsiung Hsu and Richard R Kirby and Jeff Knight and Alexandra Kraberg and Jianping Li and Tzu-Ting Lo and Ranga B. Myneni and Ryan P. North and Alan J. Pounds and Tim Sparks and Ren{\'e} St{\"u}bi and Yongjun Tian and Karen H. Wiltshire and Dong Xiao and Zaichun Zhu}
}
@article {4417,
	title = {Image analysis-based classification of pigmentation patterns in fish: A case study of pseudo-albinism in Senegalese sole},
	journal = {Aquaculture},
	volume = {464},
	year = {2016},
	pages = {303 - 308},
	keywords = {Pseudo-albinism},
	issn = {0044-8486},
	doi = {http://dx.doi.org/10.1016/j.aquaculture.2016.06.040},
	url = {http://www.sciencedirect.com/science/article/pii/S0044848616303441},
	author = {Wishkerman, A and Boglino, A and Darias, Maria and Andree, K B and Est{\'e}vez, A and Gisbert, E}
}
@article {4269,
	title = {Influence of intertidal recreational fisheries and {\textquoteleft}bouchot{\textquoteright} mussel culture on bivalve recruitment},
	journal = {Marine Environmental Research},
	volume = {117},
	year = {2016},
	pages = {1 - 12},
	abstract = {<p>Abstract In coastal environments, fishing and aquaculture may be important sources of disturbance to ecosystem functioning, the quantification of which must be assessed to make them more sustainable. In the Chausey Archipelago, France, recreational fishing and commercial shellfish farming are the only two evident anthropogenic activities, dominated by bivalve hand-raking and {\textquoteleft}bouchot{\textquoteright} mussel culture, respectively. This study evaluates the impact of both activities on bivalve recruitment dynamics by comparing primary recruitment intensity (short-term effect) and recruitment efficiency (medium-term effect) by sampling bivalves in reference (undisturbed) and disturbed (i.e. subjected to hand-raking or in {\textquoteleft}bouchot{\textquoteright} mussel culture areas) parcels throughout and at the end of the recruitment season, respectively. Specific hypotheses evaluated were that (H1) bivalve hand-raking negatively affects bivalve recruitment and that (H2) {\textquoteleft}bouchot{\textquoteright} mussel culture promotes bivalve recruitment. Patterns in bivalve community structure in reference parcels (i.e. natural pattern) differed between initial and final recruitment, underlining the great importance of early post-settlement processes, particularly secondary dispersal. Primary recruitment intensity was inhibited in hand-raking parcels whereas it was promoted in {\textquoteleft}bouchot{\textquoteright} mussel culture parcels, but the effect on recruitment efficiency was muted for both activities due to post-settlement processes. Nevertheless, the importance of effects that occur during the first step of recruitment should not be ignored as they may affect bivalve communities and induce immediate consequences on the trophic web through a cascade effect. Finally, it is highlighted that hand-raking damages all life stages of the common cockle Cerastoderma edule, one of the major target species, suggesting that this activity should be managed with greater caution than is currently done.</p>
},
	keywords = {{\textquoteleft}Bouchot{\textquoteright}},
	issn = {0141-1136},
	doi = {http://dx.doi.org/10.1016/j.marenvres.2016.03.006},
	url = {http://www.sciencedirect.com/science/article/pii/S0141113616300319},
	author = {Nicolas Toupoint and Pierrick Barbier and R{\'e}jean Tremblay and P Archambault and Christopher W. McKindsey and Gesche Winkler and Tarik Meziane and Fr{\'e}d{\'e}ric Olivier}
}
@article {4575,
	title = {Insights from the shell proteome: biomineralization to adaptation.},
	journal = {Mol Biol Evol},
	year = {2016},
	month = {2016 Oct 15},
	abstract = {<p>Bivalves have evolved a range of complex shell forming mechanisms that are reflected by their incredible diversity in shell mineralogy and microstructures. A suite of proteins exported to the shell matrix space plays a significant role in controlling these features, in addition to underpinning some of the physical properties of the shell itself. Although, there is a general consensus that a minimum basic protein tool kit is required for shell construction, to date, this remains undefined. In this study the shell matrix proteins (SMPs) of four highly divergent bivalves (The Pacific oyster, Crassostrea gigas; the blue mussel, Mytilus edulis; the clam, Mya truncata and the king scallop, Pecten maximus) were analyzed in an identical fashion using proteomics pipeline. This enabled us to identify the critical elements of a "basic tool kit" for calcification processes, which were conserved across the taxa irrespective of the shell morphology and arrangement of the crystal surfaces. In addition, protein domains controlling the crystal layers specific to aragonite and calcite were also identified. Intriguingly, a significant number of the identified SMPs contained domains related to immune functions. These were often are unique to each species implying their involvement not only in immunity, but also environmental adaptation. This suggests that the SMPs are selectively exported in a complex mix to endow the shell with both mechanical protection and biochemical defense.</p>
},
	issn = {1537-1719},
	doi = {10.1093/molbev/msw219},
	author = {Arivalagan, Jaison and Yarra Teja and Marie, Benjamin and Sleight, Victoria A and Duvernois-Berthet, Evelyne and Clark, Melody S and Marie, Arul and Berland, Sophie}
}
@article {4547,
	title = {Massive yet grossly underestimated global costs of invasive insects},
	journal = {Nature Communications},
	volume = {7},
	year = {2016},
	month = {10/2016},
	pages = {12986},
	abstract = {Insects have presented human society with some of its greatest development challenges by spreading diseases, consuming crops and damaging infrastructure. Despite the massive human and financial toll of invasive insects, cost estimates of their impacts remain sporadic, spatially incomplete and of questionable quality. Here we compile a comprehensive database of economic costs of invasive insects. Taking all reported goods and service estimates, invasive insects cost a minimum of US$70.0 billion per year globally, while associated health costs exceed US$6.9 billion per year. Total costs rise as the number of estimate increases, although many of the worst costs have already been estimated (especially those related to human health). A lack of dedicated studies, especially for reproducible goods and service estimates, implies gross underestimation of global costs. Global warming as a consequence of climate change, rising human population densities and intensifying international trade will allow these costly insects to spread into new areas, but substantial savings could be achieved by increasing surveillance, containment and public awareness.},
	doi = {10.1038/ncomms12986},
	url = {http://www.nature.com/ncomms/2016/161004/ncomms12986/full/ncomms12986.html},
	author = {Bradshaw, Corey J.A. and Leroy, Boris and Bellard, C{\'e}line and Roiz, David and Albert, C{\'e}line and Fournier, Alice and Barbet-Massin, Morgane and Salles, Jean-Michel and Simard, Fr{\'e}d{\'e}ric and Courchamp, Franck}
}
@article {4594,
	title = {Morphological review of the freshwater fairy shrimp Dendrocephalus brasiliensis Pesta, 1921 (Anostraca: Thamnocephalidae)},
	journal = {Nauplius},
	volume = {24},
	year = {2016},
	month = {08/2016},
	pages = {1-10},
	abstract = {<p>Information concerning the morphology of Dendrocephalus brasiliensis Pesta, 1921 is currently fragmented. This study reviewed the morphological structures described previously and new features (e.g., antenna-like structures and gonopod). We review the distribution of this species and also expand the geographic distribution of D. brasiliensis in the state of Alagoas. The specimens were obtained from fish-breeding tanks in Porto Real do Col{\'e}gio, Alagoas, Brazil, in November 2012. Several morphological structures of D. brasiliensis are described in greater detail, including all branches and sub-branches from the frontal appendage and thoracopods from one population and compared to other species.</p>
},
	doi = {10.1590/2358-2936e2016008},
	author = {Samara de Paiva Barros-Alves and Douglas Fernandes Rodrigues Alves and Eduardo Ant{\^o}nio Bolla Jr and Nicolas Rabet and Gustavo Luis Hirose}
}
@article {4491,
	title = {Nervous system development in cephalopods: How egg yolk-richness modifies the topology of the mediolateral patterning system.},
	journal = {Dev Biol},
	volume = {415},
	year = {2016},
	month = {2016 Jul 1},
	pages = {143-56},
	abstract = {<p>Cephalopods possess the most complex centralized nervous system among molluscs and the molecular determinants of its development have only begun to be explored. To better understand how evolved their brain and body axes, we studied Sepia officinalis embryos and investigated the expression patterns of neural regionalization genes involved in the mediolateral patterning of the neuroectoderm in model species. SoxB1 expression reveals that the embryonic neuroectoderm is made of several distinct territories that constitute a large part of the animal pole disc. Concentric nkx2.1, pax6/gsx, and pax3/7/msx/pax2/5/8 positive domains subdivide this neuroectoderm. Looking from dorsal to ventral sides, the sequence of these expressions is reminiscent of the mediolateral subdivision in model species, which provides good evidence for "mediolateral patterning" conservation in cephalopods. A specific feature of cephalopod development, however, includes an unconventional orientation to this mediolateral sequence: median markers (like nkx2.1) are unexpectedly expressed at the periphery of the cuttlefish embryo and lateral markers (like Pax3/7) are expressed centrally. As the egg is rich with yolk, the lips of the blastopore (that classically organizes the neural midline) remain unclosed at the lateral side of the animal pole until late stages of organogenesis, therefore reversing the whole embryo topology. These findings confirm - by means of molecular tools - the location of both ventral and dorsal poles in cephalopod embryos.</p>
},
	issn = {1095-564X},
	doi = {10.1016/j.ydbio.2016.04.027},
	author = {Buresi, Auxane and Aude Andouche and Navet, S and Yann Bassaglia and Laure Bonnaud-Ponticelli and S{\'e}bastien Baratte}
}
@article {4676,
	title = {A new species and four new records of sedentary polychaetes from the Canadian High Arctic},
	journal = {Journal of the Marine Biological Association of the United Kingdom},
	year = {2016},
	month = {007},
	pages = {1-10},
	abstract = {<p>During ArcticNet surveys aboard {\textquoteleft}CCGS Amundsen{\textquoteright} in 2011, several subtidal stations located in Canadian Archipelago were sampled in order to study the composition of their benthic communities. Among the abundant material sampled, several specimens of rare polychaete species were found. Examination of this material showed four species not previously recorded in the area, and a new species described herein. Descriptions of these specimens are given in this work. Ophelina brattegardi Kongsrud et al., 2011 is characterized by a body composed of 27{\textendash}28 chaetigers, by having the parapodia of the last four chaetigers shifted to the ventral side of the body, and by lacking branchiae in mid-body chaetigers. Macrochaeta polyonix Eliason, 1962 is unique within the genus in having several (instead of one or two) compound neurochaetae in anterior parapodia. Chaetozone acuta Banse \&amp; Hobson, 1968 is characterized by having spines from anterior third of the body and arranged in bundles composed of " $\#$ "just a few chaetae. Chaetozone jubata Chambers \&amp; Woodham, 2003 can be distinguished from similar species by having very long capillary chaetae from chaetiger 2 or 3. Finally, Dialychone hervyae n. sp. is characterized by bearing four pairs of radioles with narrow flanges, by the bilobed tip of its first peristomial ring that projects beyond the collar, and by the paleate thoracic notochaetae bearing long mucros.</p>
},
	doi = {10.1017/S0025315416000953},
	url = {https://www.cambridge.org/core/article/div-class-title-a-new-species-and-four-new-records-of-sedentary-polychaetes-from-the-canadian-high-arctic-div/3950848DE7205A141D2159F4FA91FDA2},
	author = {Eduardo Lopez and Fr{\'e}d{\'e}ric Olivier and Cindy Grant and P Archambault}
}
@article {4372,
	title = {Pollen limitation may be a common Allee effect in marine  hydrophilous plants: implications for decline and recovery  in seagrasses},
	journal = {Oecologia},
	year = {2016},
	pages = {1-15},
	doi = {10.1007/s00442-016-3665-7},
	author = {B.I. Van Tussenbroek and L.M. Soissons and T.J. Bouma and R. Asmus and I. Auby and F.G. Brun and P.G. Cardoso and Nicolas Desroy and J{\'e}r{\^o}me Fournier and F. Ganthy and J.M. Garmendia and Laurent Godet and T.F. Grilo and P. Kadel and B. Ondiviela and G. Peralta and M. Recio and M. Valle and T. Van der Heide and van Katwijk, M M}
}
@article {6828,
	title = {Seeing the ocean through the eyes of seabirds: a new path for marine conservation?},
	journal = {Marine Policy},
	volume = {68},
	year = {2016},
	pages = {212{\textendash}220},
	doi = {https://doi.org/10.1016/j.marpol.2016.02.015},
	url = {https://www.sciencedirect.com/science/article/pii/S0308597X16000671},
	author = {Lescro{\"e}l, Am{\'e}lie and Mathevet, Rapha{\"e}l and Clara P{\'e}ron and Authier, Matthieu and Provost, Pascal and Takahashi, Akinori and Gr{\'e}millet, David}
}
@article {4270,
	title = {Shell matrix proteins of the clam, Mya truncata: Roles beyond shell formation through proteomic study},
	journal = {Marine Genomics},
	volume = {27},
	year = {2016},
	month = {06/2016},
	pages = {69-74},
	abstract = {<p>Abstract Mya truncata, a soft shell clam, is presented as a new model to study biomineralization through a proteomics approach. In this study, the shell and mantle tissue were analysed in order to retrieve knowledge about the secretion of shell matrix proteins (SMPs). Out of 67 and 127 shell and mantle proteins respectively, 16 were found in both shell and mantle. Bioinformatic analysis of \{SMP\} sequences for domain prediction revealed the presence of several new domains such as fucolectin tachylectin-4 pentraxin-1 (FTP), scavenger receptor, alpha-2-macroglobulin ({\OE}{\textpm}2 M), lipocalin and myosin tail along with previously reported \{SMP\} domains such as chitinase, carbonic anhydrase, tyrosinase, sushi, and chitin binding. Interestingly, these newly predicted domains are attributed with molecular functions other than biomineralization. These findings suggest that shells may not only act as protective armour from predatory action, but could also actively be related to other functions such as immunity. In this context, the roles of \{SMPs\} in biomineralization need to be looked in a new perspective.</p>
},
	keywords = {biomineralization},
	issn = {1874-7787},
	doi = {http://dx.doi.org/10.1016/j.margen.2016.03.005},
	url = {http://www.sciencedirect.com/science/article/pii/S1874778716300186},
	author = {Arivalagan, Jaison and Marie, Benjamin and Victoria A. Sleight and Melody S. Clark and Berland, Sophie and Marie, Arul}
}
@article {4176,
	title = {Spatial and seasonal contrasts of sedimentary organic matter in floodplain lakes of the central Amazon basin},
	journal = {Biogeosciences},
	volume = {13},
	year = {2016},
	type = {original},
	abstract = {<p><br />
In this study, we investigated the seasonal and spatial pattern of sedimentary organic matter (SOM) in five floodplain lakes of the central Amazon basin (Cabaliana, Janauaca, Cana{\c c}ari, Mirituba and Curuai) which have different morphologies, hydrodynamics and vegetation coverages. Surface sediments were collected in four hydrological seasons: low water (LW), rising water (RW), high water (HW) and falling water (FW) in 2009 and 2010. We inves-tigated commonly used bulk geochemical tracers such as the C/N ratio and the stable isotopic composition of organic carbon (13Cor). These results were compared with lignin phenol parameters as an indicator of vascular plant detritus and branched glycerol dialkyl glycerol tetraethers (brGDGTs) to trace the input of soil organic matter (OM) from land to the aquatic settings. We also applied the crenarchaeol as an indi- cator of aquatic (rivers and lakes) OM. Our data showed that during the RW and FW seasons, the surface sediments were enriched in lignin and brGDGTs in comparison to other seasons. Our study also indicated that floodplain lake sediments primarily consisted of allochthonous, C3 plant-derived OM. However, a downstream increase in C4 macrophyte-derivedOM contribution was observed along the gradient of increas-ing open waters {\textendash} i.e., from upstream to downstream. Accordingly, we attribute the temporal and spatial difference in SOM composition to the hydrological dynamics between the floodplain lakes and the surrounding flooded forests.<br />
\&nbsp;</p>
},
	author = {Sobrinho, R L and Bernardes, Marcelo C and Gwena{\"e}l Abril and Kim, J-H and Zell, C and Jean-Michel Mortillaro and Tarik Meziane and Moreira-Turcq, P and J S Sinningh Damst{\'e}}
}
@article {6829,
	title = {Starving seabirds: unprofitable foraging and its fitness consequences in Cape gannets competing with fisheries in the Benguela upwelling ecosystem},
	journal = {Marine biology},
	volume = {163},
	year = {2016},
	pages = {35},
	author = {Gr{\'e}millet, David and Clara P{\'e}ron and Kato, Akiko and Am{\'e}lineau, Fran{\c c}oise and Ropert-Coudert, Yan and Ryan, Peter G and Pichergru, Lorien}
}
@article {4215,
	title = {Which factors determine the altitudinal distribution of tropical Andean riverine fishes?},
	journal = {Revista de Biologia Tropical},
	volume = {64},
	year = {2016},
	month = {03/2016},
	pages = {173-192},
	abstract = {<p>Abstract: Which factors determine the altitudinal distribution of tropical Andean riverine fishes?</p>

<p>Altitudinal gradients represent an appropriate system to assess whether there is a relationship between richness patterns, environmental variables, and the ecological processes that determine the species type and number inhabiting a given area. In mountain streams freshwater fishes, the most prevalent relationship is a monotonic decrease in species richness with elevation. The objective of this study was to evaluate four hypotheses that can explain the negative relationship between local fish species richness and altitude, 1) the hypothesis of decreasing energy availability, 2) the hypothesis of increasing climate severity, 3) the hypothesis of habitat diversity, and 4) the hypothesis of isolation by physical severity of the environment. Fish and macro-invertebrates were col- lected following standard methods from 83 sites (between 200-4 000 meters) of two river basins in the Bolivian Amazon. The first hypothesis was tested by analyzing relationships between the density of macro-invertebrates, the richness of invertivorous fish species and altitude; while the second and third hypotheses were assessed by a multiple regression analysis (GLM) between fish species richness and several local and regional factors. Besides, assemblage dissimilarity between sites along the altitudinal gradient was analyzed using βsim and βness indices. Fish richness decreases linearly with increasing altitude. The density of macro-invertebrates tends to increase at higher altitudes, contrary to invertivorous fish species richness, suggesting that energy availability is not a limiting factor for fish species colonization. The GLM explained 86 \% of the variation in fish species richness, with a significant contribution of water temperature, maximum slope in the river mainstem, and stream width. There is a higher species turnover (βsim) between sites at low elevation. Inversely, βness shows higher values in the upper parts, corresponding to change in assemblages mainly due to species loss. Taken together, these results suggest that climatic and physical severities create strong barriers to colonization, further explaining the decrease in fish richness along the altitudinal gradient.</p>
},
	issn = {ISSN-0034-7744},
	author = {E. De La Barra and J. Zubieta and G. Aguilera and M. Maldonado and Marc Pouilly and Thierry Oberdorff}
}
@article {4197,
	title = {Age, growth, and mortality of the Atlantic goliath grouper Epinephelus itajara in French Guiana. },
	journal = {Endangered Species Research},
	volume = {28},
	year = {2015},
	month = {2015},
	pages = {275-287},
	author = {C. Artero and D.J. Murie and C.C. Koenig and R. Berzins and C. Bouchon and L. Lampert}
}
@article {Miller201584,
	title = {Biodiversity and distribution of leptocephali west of the Mascarene Plateau in the southwestern Indian Ocean},
	journal = {Progress in Oceanography},
	volume = {137},
	year = {2015},
	note = {cited By 10},
	pages = {84-102},
	doi = {10.1016/j.pocean.2015.05.026},
	url = {https://www.sciencedirect.com/science/article/pii/S0079661115001317},
	author = {Miller, M.J. and Eric Feunteun and Aoyama, J. and Watanabe, S. and Kuroki, M. and Lecomte-Finiger, R. and Minegishi, Y. and Robinet, T. and R{\'e}veillac, E. and Gagnaire, P.-A. and Berrebi, P. and Tsukamoto, K. and Otake, T.}
}
@article {4165,
	title = {Biogeographical distribution of Rimicaris exoculata resident gut epibiont communities along the Mid-Atlantic Ridge hydrothermal vent sites.},
	journal = {FEMS Microbiol Ecol},
	volume = {91},
	year = {2015},
	month = {2015 Oct},
	abstract = {<p>Rimicaris exoculata is a deep-sea hydrothermal vent shrimp whose enlarged gill chamber houses a complex trophic epibiotic community. Its gut harbours an autochthonous and distinct microbial community. This species dominates hydrothermal ecosystem megafauna along the Mid-Atlantic Ridge, regardless of contrasting geochemical conditions prevailing in them. Here, the resident gut epibiont community at four contrasted hydrothermal vent sites (Rainbow, TAG, Logatchev and Ashadze) was analysed and compiled with previous data to evaluate the possible influence of site location, using 16S rRNA surveys and microscopic observations (transmission electron microscopy, scanning electron microscopy and fluorescence in situ hybridization analyses). Filamentous epibionts inserted between the epithelial cell microvilli were observed on all examined samples. Results confirmed resident gut community affiliation to Deferribacteres, Mollicutes, Epsilonproteobacteria and to a lesser extent Gammaproteobacteria lineages. Still a single Deferribacteres phylotype was retrieved at all sites. Four Mollicutes-related operational taxonomic units were distinguished, one being only identified on Rainbow specimens. The topology of ribotype median-joining networks illustrated a community diversification possibly following demographic expansions, suggesting a more ancient evolutionary history and/or a larger effective population size at Rainbow. Finally, the gill chamber community distribution was also analysed through ribotype networks based on sequences from R. exoculata collected at the Rainbow, Snake Pit, TAG, Logatchev and Ashadze sites. Results allow the refining of hypotheses on the epibiont role and transmission pathways.</p>
},
	issn = {1574-6941},
	doi = {10.1093/femsec/fiv101},
	author = {Durand, Lucile and Roumagnac, Marie and Cueff-Gauchard, Val{\'e}rie and Jan, Cyrielle and Guri, Mathieu and Tessier, Claire and Haond, Marine and Crassous, Philippe and Magali Zbinden and Arnaud-Haond, Sophie and Cambon-Bonavita, Marie-Anne}
}
@article {3448,
	title = {Bushmeat genetics: setting up a reference framework for the DNA typing of African forest bushmeat.},
	journal = {Mol Ecol Resour},
	volume = {15},
	year = {2015},
	month = {2014 Sep 26},
	pages = {633-651},
	abstract = {<p>The bushmeat trade in tropical Africa represents illegal, unsustainable off-takes of millions of tons of wild game - mostly mammals - per year. We sequenced four mitochondrial gene fragments (cyt b, COI, 12S, 16S) in \&gt;300 bushmeat items representing nine mammalian orders and 59 morphological species from five western and central African countries (Guinea, Ghana, Nigeria, Cameroon and Equatorial Guinea). Our objectives were to assess the efficiency of cross-species PCR amplification and to evaluate the usefulness of our multilocus approach for reliable bushmeat species identification. We provide a straightforward amplification protocol using a single {\textquoteright}universal{\textquoteright} primer pair per gene that generally yielded \&gt;90\% PCR success rates across orders and was robust to different types of meat preprocessing and DNA extraction protocols. For taxonomic identification, we set up a decision pipeline combining similarity- and tree-based approaches with an assessment of taxonomic expertise and coverage of the GENBANK database. Our multilocus approach permitted us to: (i) adjust for existing taxonomic gaps in GENBANK databases, (ii) assign to the species level 67\% of the morphological species hypotheses and (iii) successfully identify samples with uncertain taxonomic attribution (preprocessed carcasses and cryptic lineages). High levels of genetic polymorphism across genes and taxa, together with the excellent resolution observed among species-level clusters (neighbour-joining trees and Klee diagrams) advocate the usefulness of our markers for bushmeat DNA typing. We formalize our DNA typing decision pipeline through an expert-curated query database - DNAbushmeat - that shall permit the automated identification of African forest bushmeat items.</p>
},
	issn = {1755-0998},
	doi = {10.1111/1755-0998.12334},
	author = {Gaubert, Philippe and Njiokou, Flobert and Olayemi, Ayodeji and Pagani, Paolo and Dufour, Sylvain and Danquah, Emmanuel and Nutsuakor, Mac Elikem K and Ngua, Gabriel and Missoup, Alain-Didier and Pablo Tedesco and Dernat, R{\'e}my and Antunes, Agostinho}
}
@article {4823,
	title = {Comparative environmental performance of artisanal and commercial feed use in Peruvian freshwater aquaculture},
	journal = {Aquaculture},
	volume = {435},
	year = {2015},
	pages = {52-66},
	type = {Journal Article},
	issn = {0044-8486},
	doi = {http://dx.doi.org/10.1016/j.aquaculture.2014.08.001},
	url = {http://www.sciencedirect.com/science/article/pii/S0044848614003925},
	author = {Avad{\'\i}, Angel and Pelletier, Nathan and Aubin, Jo{\"e}l and Ralite, St{\'e}phane and Jesus Nu{\~n}ez-Rodriguez and Fr{\'e}on, Pierre}
}
@article {3982,
	title = {Dietary tracers in  Bathyarca glacialis from  contrasting trophic regions in the Canadian Arctic},
	journal = {Marine Ecology Progress Series},
	volume = {536},
	year = {2015},
	month = {09/2015},
	pages = {175-186},
	keywords = {Bathyarca glacialis, Bivalve, Canadian Arctic Archipelago, FATMs, Fatty acid trophic markers, Non-methylene-interrupted fatty acid, Pelagic {\textendash} benthic coupling},
	author = {Gaillard, B and Tarik Meziane and R{\'e}jean Tremblay and P Archambault and Layton, KKS and Martel, AL and Fr{\'e}d{\'e}ric Olivier}
}
@article {Martin2015991,
	title = {Dispersal capacities of anadromous Allis shad population inferred from a coupled genetic and otolith approach},
	journal = {Canadian Journal of Fisheries and Aquatic Sciences},
	volume = {72},
	number = {7},
	year = {2015},
	note = {cited By 13},
	pages = {991-1003},
	doi = {10.1139/cjfas-2014-0510},
	url = {https://www.nrcresearchpress.com/doi/abs/10.1139/cjfas-2014-0510?journalCode=cjfas},
	author = {Martin, J. and Rougemont, Q. and Drouineau, H. and Launey, S. and Jatteau, P. and Bareille, G. and Berail, S. and P{\'e}cheyran, C. and Eric Feunteun and Roques, S. and Clav{\'e}, D. and Nach{\'o}n, D.J. and Antunes, C. and Mota, M. and R{\'e}veillac, E. and Daverat, F.}
}
@article {4102,
	title = {DNA Barcoding Indonesian freshwater fishes: challenges and prospects.},
	journal = {DNA barcode},
	volume = {3},
	year = {2015},
	pages = {144-169},
	keywords = {Checklist, DNA barcoding, Southeast Asia},
	author = {Hubert, Nicolas and Kadarusman and Wibowo, A and Fr{\'e}d{\'e}ric Busson and Caruso, D. and Sulandari, S. and Nafiqoh, N and R{\"u}ber, L and Pouyaud, L and Avarre, JC and Herder, F and Hanner, R and Philippe Keith and Hadiaty, Renny}
}
@article {3773,
	title = {The Dopaminergic Neurons Controlling Anterior Pituitary Functions: Anatomy and Ontogenesis in Zebrafish.},
	journal = {Endocrinology},
	year = {2015},
	month = {2015 May 12},
	pages = {en20151091},
	abstract = {<p>Dopaminergic (DA) neurons located in the preoptico-hypothalamic region of the brain exert a major neuroendocrine control on reproduction, growth and homeostasis by regulating the secretion of anterior pituitary (or adenohypophysis) hormones. Here, using a retrograde tract tracing experiment, we identified the neurons playing this role in the zebrafish. The DA cells projecting directly to the anterior pituitary are localized in the most anteroventral part of the preoptic area, and we named them preoptico-hypophyseal DA (POHDA) neurons. During development, these neurons do not appear before 72 hours post fertilization (hpf) and are the last dopaminergic cell group to differentiate. We found that the number of neurons in this cell population continues to increase life-long, proportionally to the growth of the fish. BrdU incorporation analysis suggested that this increase is due to continuous neurogenesis and not due to a phenotypic change in already existing neurons. Finally, expression profiles of several genes (foxg1a, dlx2a and nr4a2a/b) were different in the POHDA compared to the adjacent suprachiasmatic DA neurons, suggesting that POHDA neurons develop as a distinct DA cell population in the preoptic area. This study offers some insights into the regional identity of the preoptic area and provides the first bases for future functional genetic studies on the development of DA neurons controlling anterior pituitary functions.</p>
},
	issn = {1945-7170},
	doi = {10.1210/en.2015-1091},
	author = {Fontaine, Romain and Affaticati, Pierre and Bureau, Charlotte and Colin, Ingrid and Demarque, Micha{\"e}l and Sylvie Dufour and Vernier, Philippe and Yamamoto, Kei and Pasqualini, Catherine}
}
@article {Trancart2015168,
	title = {The effect of thermal shock during diel vertical migration on the energy required for oceanic migration of the European silver eel},
	journal = {Journal of Experimental Marine Biology and Ecology},
	volume = {463},
	year = {2015},
	note = {cited By 2},
	pages = {168-172},
	doi = {10.1016/j.jembe.2014.12.004},
	url = {https://www.sciencedirect.com/science/article/pii/S0022098114003190},
	author = {Thomas Trancart and Tudorache, C. and van den Thillart, G.E.E.J.M. and Anthony Acou and Alexandre Carpentier and Boinet, C. and Gouchet, G. and Eric Feunteun}
}
@article {3663,
	title = {Foraminiferal assemblages as bioindicators to assess potential pollution in mangroves used as a natural biofilter for shrimp farm effluents (New Caledonia)},
	journal = {Marine Pollution Bulletin},
	volume = {93},
	year = {2015},
	month = {15 April 2015},
	pages = {103-120},
	type = {Research},
	abstract = {<p>In New Caledonia, semi-intensive shrimp farms release untreated effluents into the mangrove. Foraminiferal assemblages were analyzed for assessing the impact of effluent release on the benthic compartment. Comparison was made between samples collected (1) in an effluent receiving mangrove before and after the rearing cycle, and (2) for one-year monitoring an effluent receiving and a control mangrove. The distribution of foraminiferal assemblages was primarily driven by the gradient between\&nbsp;Rhizophora\&nbsp;stands and salt-flats, related to salinity and tidal elevation, and by seasonal cycles. The potential impact of effluent release was due to the combined effects of normal-saline effluents on surface salinity, and of nutrient input and microbial stimulation on food availability. Foraminiferal assemblages did not indicate a substantial impact of farm effluents and suggest that semi-intensive shrimp farming using mangrove for effluent discharge may appear as a sustainable solution in New Caledonia, when considering only the impact on the mangrove itself.</p>
},
	keywords = {Effluents, fatty acids, Foraminifera, Mangrove, Shrimp farming, SW Pacific},
	doi = {10.1016/j.marpolbul.2015.02.009},
	author = {Debenay,  J-P and Cyril Marchand and Nathalie Molnar and Ad{\'e}laide Aschenbroich and Tarik Meziane}
}
@article {4355,
	title = {Freshwater neritids (Mollusca: Gastropoda) of tropical islands, amphidromy as a life cycle, a review},
	journal = {Revue d{\textquoteright}{\'e}cologie (Terre et Vie)},
	volume = {70},
	year = {2015},
	pages = {387-397},
	author = {Ahmed Abdou and Philippe Keith and Ren{\'e} Galzin}
}
@article {3743,
	title = {An improved taxonomic sampling is a necessary but not sufficient condition for resolving inter-families relationships in Caridean decapods.},
	journal = {Genetica},
	volume = {143},
	year = {2015},
	month = {2015 Apr},
	pages = {195-205},
	abstract = {<p>During the past decade, a large number of multi-gene analyses aimed at resolving the phylogenetic relationships within Decapoda. However relationships among families, and even among sub-families, remain poorly defined. Most analyses used an incomplete and opportunistic sampling of species, but also an incomplete and opportunistic gene selection among those available for Decapoda. Here we test in the Caridea if improving the taxonomic coverage following the hierarchical scheme of the classification, as it is currently accepted, provides a better phylogenetic resolution for the inter-families relationships. The rich collections of the Mus{\'e}um National d{\textquoteright}Histoire Naturelle de Paris are used for sampling as far as possible at least two species of two different genera for each family or subfamily. All potential markers are tested over this sampling. For some coding genes the amplification success varies greatly among taxa and the phylogenetic signal is highly saturated. This result probably explains the taxon-heterogeneity among previously published studies. The analysis is thus restricted to the genes homogeneously amplified over the whole sampling. Thanks to the taxonomic sampling scheme the monophyly of most families is confirmed. However the genes commonly used in Decapoda appear non-adapted for clarifying inter-families relationships, which remain poorly resolved. Genome-wide analyses, like transcriptome-based exon capture facilitated by the new generation sequencing methods might provide a sounder approach to resolve deep and rapid radiations like the Caridea.</p>
},
	issn = {1573-6857},
	doi = {10.1007/s10709-014-9807-0},
	author = {Aznar-Cormano, L and Brisset, J and Chan, T-Y and Laure Corbari and Puillandre, N and Utge, J and Magali Zbinden and Zuccon, D and Samadi, S}
}
@article {3848,
	title = {INVENTAIRES ET ATLAS NATIONAUX DE DISTRIBUTION : POUR UNE APPROCHE PLUS IT{\'E}RATIVE ET UN R{\'E}{\'E}QUILIBRAGE TAXINOMIQUE},
	journal = {Revue d{\textquoteright}Ecologie (Terre et Vie)},
	volume = {70},
	year = {2015},
	pages = {97-120},
	author = {Julien Touroult and Laurent PONCET and Philippe Keith and Vincent Boullet and G{\'e}rard ARNAL and Herv{\'e} Brustel and Jean-Philippe SIBLET}
}
@article {Boulenger2015427,
	title = {Length-weight relationships of the silver European eel, Anguilla anguilla (Linnaeus, 1758), across its geographic range},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	number = {2},
	year = {2015},
	note = {cited By 3},
	pages = {427-430},
	doi = {10.1111/jai.12685},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/jai.12685},
	author = {Boulenger, C. and Anthony Acou and Thomas Trancart and Crivelli, A.J. and Eric Feunteun}
}
@article {4196,
	title = {Ontogenetic dietary and habitat shifts in Goliath grouper, Epinephelus itajara, from French Guiana.},
	journal = {Endangered species Research},
	volume = {27},
	year = {2015},
	month = {2015},
	pages = {155-168},
	author = {C Artero and C.C. Koenig and P. Richard and R. Berzins and G. Guillou and C. Bouchon and L. Lampert}
}
@article {4056,
	title = {Parental exposure to the herbicide diuron results in oxidative DNA damage to germinal cells of the Pacific oyster Crassostrea gigas.},
	journal = {Comp Biochem Physiol C Toxicol Pharmacol},
	year = {2015},
	month = {2015 Nov 21},
	abstract = {<p>Chemical pollution by pesticides has been identified as a possible contributing factor to the massive mortality outbreaks observed in Crassostrea gigas for several years. A previous study demonstrated the vertical transmission of DNA damage by subjecting oyster genitors to the herbicide diuron at environmental concentrations during gametogenesis. This trans-generational effect occurs through damage to genitor-exposed gametes, as measured by the comet-assay. The presence of DNA damage in gametes could be linked to the formation of DNA damage in other germ cells. In order to explore this question, the levels and cell distribution of the oxidized base lesion 8-oxodGuo were studied in the gonads of exposed genitors. High-performance liquid chromatography coupled with UV and electrochemical detection analysis showed an increase in 8-oxodGuo levels in both male and female gonads after exposure to diuron. Immunohistochemistry analysis showed the presence of 8-oxodGuo at all stages of male germ cells, from early to mature stages. Conversely, the oxidized base was only present in early germ cell stages in female gonads. These results indicate that male and female genitors underwent oxidative stress following exposure to diuron, resulting in DNA oxidation in both early germ cells and gametes, such as spermatozoa, which could explain the transmission of diuron-induced DNA damage to offspring. Furthermore, immunostaining of early germ cells seems indicates that damages caused by exposure to diuron on germ line not only affect the current sexual cycle but also could affect future gametogenesis.</p>
},
	issn = {1532-0456},
	doi = {10.1016/j.cbpc.2015.11.002},
	author = {Barranger, Audrey and Clothilde Heude-Berthelin and Rouxel, Julien and Adeline, B{\'e}atrice and Benabdelmouna, Abdellah and Burgeot, Thierry and Akcha, Farida}
}
@article {Josset2015150,
	title = {Pre-release processes influencing short-term mortality of glass eels in the French eel (Anguilla anguilla, Linnaeus 1758) stocking programme},
	journal = {ICES Journal of Marine Science},
	volume = {73},
	number = {1},
	year = {2015},
	note = {cited By 6},
	pages = {150-157},
	doi = {10.1093/icesjms/fsv074},
	url = {https://academic.oup.com/icesjms/article/73/1/150/2458188},
	author = {Josset, Q. and Thomas Trancart and Mazel, V. and Charrier, F. and Frott, L. and Anthony Acou and Eric Feunteun}
}
@article {3385,
	title = {Relationships between biodiversity and the stability of marine ecosystems: Comparisons at a European scale using meta-analysis},
	journal = {Journal of Sea Research},
	volume = {98},
	year = {2015},
	pages = {5-14},
	abstract = {<p>Abstract The relationship between biodiversity and stability of marine benthic assemblages was investigated through meta-analyses using existing data sets (n\&nbsp;=\&nbsp;28) covering various spatial (m{\textendash}km) and temporal (1973{\textendash}2006; ranging from 5 to \&gt;\&nbsp;250\&nbsp;months) scales in different benthic habitats (emergent rock, rock pools and sedimentary habitats) over different European marine systems (North Atlantic and western Mediterranean). Stability was measured by a lower variability in time, and variability was estimated as temporal variance of species richness, total abundance (density or \% cover) and community structure (using Bray{\textendash}Curtis dissimilarities on species composition and abundance). Stability generally decreased with species richness. Temporal variability in species richness increased with the number of species at both quadrat (\&lt;\&nbsp;1\&nbsp;m2) and site (\&nbsp;\&nbsp;100\&nbsp;m2) scales, while no relationship was observed by multivariate analyses. Positive relationships were also observed at the scale of site between temporal variability in species richness and variability in community structure with evenness estimates. This implies that the relationship between species richness or evenness and species richness variability is slightly positive and depends on the scale of observation. Thus, species richness does not stabilize temporal fluctuations in species number, rather species rich assemblages are those most likely to undergo the largest fluctuations in species numbers and abundance from time to time. Changes within community assemblages in terms of structure are, however, generally independent of biodiversity. Except for sedimentary and rock pool habitats, no relationship was observed between temporal variation of total abundances and diversity at either scale. Overall, our results emphasize that the relation between species richness and species-level measures of temporal variability depends on scale of measurements, type of habitats and the marine system (North Atlantic and Mediterranean) considered.</p>
},
	keywords = {Benthic Marine Coastal Habitats, Biodiversity Ecosystem Functioning, Community Variability, Diversity{\textendash}Stability Relationships, Temporal Variability},
	issn = {1385-1101},
	doi = {http://dx.doi.org/10.1016/j.seares.2014.08.004},
	url = {http://www.sciencedirect.com/science/article/pii/S1385110114001609},
	author = {Cusson, Mathieu and Tasman P. Crowe and Rita Ara{\'u}jo and Francisco Arenas and Rebbecca Aspden and Fabio Bulleri and Dominique Davoult and Kirstie Dyson and Simonetta Fraschetti and Kristjan Herk{\"u}l and C{\'e}dric Hubas and Stuart Jenkins and Jonne Kotta and Patrik Kraufvelin and Migne, A and Markus Molis and Olwyen Mulholland and Laure M.-L.J. No{\"e}l and Paterson, David M and James Saunders and Paul J. Somerfield and Isabel Sousa-Pinto and Nicolas Spilmont and Antonio Terlizzi and Lisandro Benedetti-Cecchi}
}
@article {4201,
	title = {The Research Network on Amazonian Ichthyofauna},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {1{\textendash}3},
	issn = {1439-0426},
	doi = {10.1111/jai.12986},
	url = {http://dx.doi.org/10.1111/jai.12986},
	author = {Darias, Maria and Amadio, S. A. and Rosenthal, H.}
}
@article {4362,
	title = {Revision of vernacular names for the freshwater fish of French Guiana.},
	journal = {Cybium},
	volume = {39},
	year = {2015},
	pages = {279-300},
	author = {Grenand, Pierre and Chapuis, Jean and Cognat Andr{\'e} and Cristinoi Antonia and Davy Damien and Grenand Fran{\c c}oise and Michel J{\'e}gu and Philippe Keith and Martin, Emmanuel and Nemo Fran{\c c}ois and Pagezy H{\'e}l{\`e}ne and Le Bail, Pierre-Yves}
}
@article {3764,
	title = {The role of female cephalopod researchers: past and present},
	journal = {Journal of Natural History},
	volume = {49},
	year = {2015},
	pages = {1235{\textendash}1266},
	issn = {0022-2933},
	doi = {10.1080/00222933.2015.1037088},
	url = {http://dx.doi.org/10.1080/00222933.2015.1037088},
	author = {Allcock, A. Louise and von Boletzky, Sigurd and Laure Bonnaud-Ponticelli and Brunetti, Norma E. and Cazzaniga, N{\'e}stor J. and Hochberg, Eric and Ivanovic, Marcela and Lipinski, Marek and Marian, Jos{\'e} E. A. R. and Nigmatullin, Chingis and Nixon, Marion and Jean-Paul Robin and Rodhouse, Paul G. K. and Vidal, Erica A. G.}
}
@article {4554,
	title = {Shell growth, microstructure and composition over the development cycle of the European abalone Haliotis tuberculata},
	journal = {Marine Biology},
	volume = {162},
	year = {2015},
	pages = {687{\textendash}697},
	abstract = {<p>The shell of the European abalone Haliotis tuberculata is a model for studying mechanisms of mollusc shell formation, but the early steps of shell formation and calcification remain poorly documented. The microstructure and the mineralogical and geochemical composition of larval and juvenile shells were investigated by scanning electron microscopy, infrared spectroscopy and ion microprobe analyses (NanoSIMS). Analyses were performed on shells obtained from controlled fertilisations at the hatchery France-Haliotis (Plouguerneau, France) in July 2009 and 2010 using abalone from Roscoff. Shell cross sections revealed the microstructural arrangement of the developing shell, showing progressive biomineral organisation into two differentiated layers, i.e. the outer granular and the internal nacreous layer. Infrared analysis confirmed that the European abalone shell, at every stage of development, was mostly composed of CaCO3 in the form of aragonite. Variations in trace element composition, i.e. Sr/Ca, were measured in the different stages and correlated with micro-structural changes in the shells. Experimental manganese labelling of live abalones produced cathodoluminescence marks in the growing shell sections. The increase in shell thickness can be used to determine the growth rate of an early adult abalone shell.</p>
},
	issn = {1432-1793},
	doi = {10.1007/s00227-015-2615-y},
	url = {http://dx.doi.org/10.1007/s00227-015-2615-y},
	author = {St{\'e}phanie Auzoux-Bordenave and Brahmi, C. and Badou, Aicha and de Raf{\'e}lis, M. and Huchette, S.}
}
@article {3522,
	title = {Spatio-temporal variations in the composition of organic matter in surface sediments of a mangrove receiving shrimp farm effluents (New Caledonia)},
	journal = {Science of The Total Environment},
	volume = {512{\textendash}513},
	year = {2015},
	pages = {296 - 307},
	abstract = {<p>In order to investigate spatio-temporal variations in the composition and origin of the benthic organic matter (OM) at the sediment surface in mangrove receiving shrimp farm effluents, fatty acid (FA) biomarkers, natural stable isotopes (δ13C and δ15N), C:N ratios and chlorophyll-a (chl-a) concentrations were determined during the active and the non-active period of the farm. Fatty acid compositions in surface sediments within the mangrove forest indicated that organic matter inputs varied along the year as a result of farm activity. Effluents were the source of fresh particulate organic matter for the mangrove, as evidenced by the unsaturated fatty acid (UFA) distribution. The anthropogenic \{MUFA\} 18:1ω9 was not only accumulated at the sediment surface in some parts of the mangrove, but was also exported to the seafront. Direct release of bacteria and enhanced in situ production of fungi, as revealed by specific FAs, stimulated mangrove litter decomposition under effluent runoff condition. Also, microalgae released from ponds contributed to maintain high benthic chl-a concentrations in mangrove sediments in winter and to a shift in microphytobenthic community assemblage. Primary production was high whether the farm released effluent or not which questioned the temporary effect of shrimp farm effluent on benthic microalgae dynamic. This study outlined that mangrove benthic organic matter was qualitatively and quantitatively affected by shrimp farm effluent release and that responses to environmental condition changes likely depended on mangrove stand characteristics.</p>
},
	keywords = {Chlorophyll-a, fatty acids, Mangrove, Organic matter, Shrimp farming, Stable isotopes},
	issn = {0048-9697},
	doi = {http://dx.doi.org/10.1016/j.scitotenv.2014.12.082},
	url = {http://www.sciencedirect.com/science/article/pii/S0048969714017938},
	author = {Ad{\'e}laide Aschenbroich and Cyril Marchand and Nathalie Molnar and Jonhatan Deborde and C{\'e}dric Hubas and Herv{\'e} Rybarczyk and Tarik Meziane}
}
@article {Feunteun201569,
	title = {Stable isotopic composition of anguilliform leptocephali and other food web components from west of the Mascarene Plateau},
	journal = {Progress in Oceanography},
	volume = {137},
	year = {2015},
	note = {cited By 14},
	pages = {69-83},
	doi = {10.1016/j.pocean.2015.05.024},
	url = {https://www.sciencedirect.com/science/article/pii/S0079661115001299},
	author = {Eric Feunteun and Miller, M.J. and Alexandre Carpentier and Aoyama, J. and Christine Dupuy and Kuroki, M. and Pagano, M. and R{\'e}veillac, E. and Sellos, D. and Watanabe, S. and Tsukamoto, K. and Otake, T.}
}
@article {3778,
	title = {Temporal and spatial distribution of young Brachyplatystoma spp. (Siluriformes: Pimelodidae) along the rapids stretch of the Madeira River (Brazil) before the construction of two hydroelectric dams},
	journal = {Journal of Fish Biology},
	volume = {86},
	year = {2015},
	pages = {1429-1437},
	author = {Cella-Ribeiro, Ariana and Assakawa, L. F. and Torrente-Vilara, Gislene and Zuanon, Jansen and Leite, R. G. and Doria, C. and Fabrice Duponchelle}
}
@article {3586,
	title = {Temporal and spatial distribution of young Brachyplatystoma spp. (Siluriformes: Pimelodidae) along the rapids stretch of the Madeira River (Brazil) before the construction of two hydroelectric dams},
	journal = {Journal of Fish Biology},
	volume = {86},
	year = {2015},
	month = {04/2015},
	pages = {1429-37},
	author = {Cella Ribeiro, A. and Fugimoto Assakawa, L. and Torrente-Vilara, Gislene and Zuanon, Jansen and Leite, R.G. and Doria, C. and Fabrice Duponchelle}
}
@article {5049,
	title = {Trophic networks: How do theories link ecosystem structure and functioning to stability properties? A review},
	journal = {Ecological indicators},
	volume = {52},
	year = {2015},
	pages = {458{\textendash}471},
	author = {Saint-B{\'e}at, B and Dan Baird and H Asmus and R Asmus and Bacher, C and Pacella, S R and Johnson, Galen A and David, Val{\'e}rie and V{\'e}zina, A F and Nathalie Niquil}
}
@article {4679,
	title = {Trophic opportunism of central Amazon floodplain fish},
	journal = {Freshwater Biology},
	volume = {60},
	year = {2015},
	pages = {1659{\textendash}1670},
	author = {Jean-Michel Mortillaro and Marc Pouilly and Wach, M and Carlos E.C. Freitas and Gwena{\"e}l Abril and Tarik Meziane}
}
@inbook {4068,
	title = {Unveiling the evolution of bivalve nacre proteins by shell proteomics of Unionoidae. },
	booktitle = {Biomineralization: from fundamentals to biomaterials \& environmental issues},
	volume = {672},
	year = {2015},
	pages = {pp.158-167},
	edition = {Key Engineering Materials, 978-3-03835-591-5 Trans Tech Publications Ltd},
	chapter = {2},
	author = {Marie, Benjamin and Arivalagan, Jaison and Dubost, Lionel and Berland, Sophie and Marie, Arul and Marin, Fr{\'e}d{\'e}ric}
}
@article {4399,
	title = {Using barcoding of larvae for investigating the breeding seasons of pimelodid catfishes from the Mara{\~n}on, Napo and Ucayali rivers in the Peruvian Amazon},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {40{\textendash}51},
	issn = {1439-0426},
	doi = {10.1111/jai.12987},
	url = {http://dx.doi.org/10.1111/jai.12987},
	author = {Garc{\'\i}a-D{\'a}vila, C. and Castro-Ruiz, Diana and Renno, Jean-Francois and Chota-Macuyama, Werner and Carvajal-Vallejos, Fernando and Sanchez, H. and Angulo, C. and Nolorbe, C. and Alvarado, J. and Estivals, G and Jesus Nu{\~n}ez-Rodriguez and Fabrice Duponchelle}
}
@article {5040,
	title = {Using ecological models to assess ecosystem status in support of the European Marine Strategy Framework Directive},
	journal = {ECOLOGICAL INDICATORS},
	volume = {58},
	year = {2015},
	month = {NOV},
	pages = {175-191},
	abstract = {<p class="rtejustify">The European Union{\textquoteright}s Marine Strategy Framework Directive (MSFD) seeks to achieve, for all European seas, "Good Environmental Status" (GEnS), by 2020. Ecological models are currently one of the strongest approaches used to predicting and understanding the consequences of anthropogenic and climate-driven changes in the natural environment. We assess the most commonly used capabilities of the modelling community to provide information about indicators outlined in the MSFD, particularly on biodiversity, food webs, non-indigenous species and seafloor integrity descriptors. We built a catalogue of models and their derived indicators to assess which models were able to demonstrate: (1) the linkages between indicators and ecosystem structure and function and (2) the impact of pressures on ecosystem state through indicators. Our survey identified 44 ecological models being implemented in Europe, with a high prevalence of those that focus on links between hydrodynamics and biogeochemistry, followed by end-to-end, species distribution/habitat suitability, bio-optical (remote sensing) and multispecies models. Approximately 200 indicators could be derived from these models, the majority of which were biomass and physical/hydrological/chemical indicators. Biodiversity and food webs descriptors, with similar to 49\% and similar to 43\% respectively, were better addressed in the reviewed modelling approaches than the non-indigenous species (0.3\%) and sea floor integrity (similar to 8\%) descriptors. Out of 12 criteria and 21 MSFD indicators relevant to the abovementioned descriptors, currently only three indicators were not addressed by the 44 models reviewed. Modelling approaches showed also the potential to inform on the complex, integrative ecosystem dimensions while addressing ecosystem fundamental properties, such as interactions between structural components and ecosystems services provided, despite the fact that they are not part of the MSFD indicators set. The cataloguing of models and their derived indicators presented in this study, aim at helping the planning and integration of policies like the MSFD which require the assessment of all European Seas in relation to their ecosystem status and pressures associated and the establishment of environmental targets (through the use of indicators) to achieve GEnS by 2020. (C) 2015 The Authors. Published by Elsevier Ltd.</p>
},
	issn = {{1470-160X}},
	doi = {{10.1016/j.ecolind.2015.05.037}},
	author = {Piroddi, Chiara and Teixeira, Heliana and Lynam, Christopher P. and Smith, Chris and Alvarez, Maria C. and Mazik, Krysia and Andonegi, Eider and Churilova, Tanya and Tedesco, Letizia and Chifflet, Marina and Chust, Guillem and Galparsoro, Ibon and Garcia, Ana Carla and Kamari, Maria and Kryvenko, Olga and G{\'e}raldine Lassalle and Neville, Suzanna and Nathalie Niquil and Papadopoulou, Nadia and Rossberg, Axel G. and Suslin, Vjacheslav and Uyarra, Maria C.}
}
@article {4392,
	title = {Variations in reproductive strategy of the silver Arowana, Osteoglossum bicirrhosum Cuvier, 1829 from four sub-basins of the Peruvian Amazon},
	journal = {Journal of Applied Ichthyology },
	volume = {31},
	year = {2015},
	pages = {19-30},
	author = {Fabrice Duponchelle and Ruiz-Arce Adela and Waty, A. and Garc{\'\i}a-Vasquez, Aurea and Renno, J-F and Chu-Koo, F and Garc{\'\i}a-D{\'a}vila, C. and Vargas, Gladys and Salvador Tello and Ortiz, A. and Pinedo, R. and Manzanares V{\'a}squez, R. and Jesus Nu{\~n}ez-Rodriguez}
}
@article {3769,
	title = {What did we learn from PEGASEAS forum "Science and Governance of the Channel Marine Ecosystem"?},
	journal = {Mar Pollut Bull},
	volume = {93},
	year = {2015},
	month = {2015 Apr 15},
	pages = {1-4},
	abstract = {<p>As one of the busiest marine ecosystems in the world, the English Channel is subjected to strong pressures due to the human activities occurring within it. Effective governance is required to improve the combined management of different activities and so secure the benefits provided by the Channel ecosystem. In July 2014, a Cross-Channel Forum, entitled "Science and Governance of the Channel Marine Ecosystem", was held in Caen (France) as part of the INTERREG project "Promoting Effective Governance of the Channel Ecosystem" (PEGASEAS). Here we use outputs from the Forum as a framework for providing Channel-specific advice and recommendations on marine governance themes, including the identification of knowledge gaps, which may form the foundation of future projects for the next INTERREG project call (2015-2020).</p>
},
	issn = {1879-3363},
	doi = {10.1016/j.marpolbul.2015.02.021},
	author = {L Evariste and Claquin, Pascal and Jean-Paul Robin and Arnaud Auber and Abigail McQuatters-Gollop and Fletcher, Stephen and Glegg, Gillian and Jean-Claude Dauvin}
}
@article {4678,
	title = {Which factors determine the altitudinal distribution of tropical Andean riverine fishes?},
	journal = {Revista de Biolog{{\'\i}a Tropical/International Journal of Tropical Biology and Conservation},
	volume = {64},
	year = {2015},
	pages = {157{\textendash}176},
	author = {De La Barra, Evans and Zubieta, Jos{\'e} and Aguilera, Gast{\'o}n and Maldonado, Mabel and Marc Pouilly and Oberdorff, Thierry}
}
@article {Abril2014,
	title = {{Amazon River carbon dioxide outgassing fuelled by wetlands}},
	journal = {Nature},
	volume = {505},
	year = {2014},
	pages = {395-398},
	publisher = {Nature},
	doi = {10.1038/nature12797},
	author = {Gwena{\"e}l Abril and Martinez, Jean Michel and Luis Felipe Artigas and Moreira-Turcq, Patricia and Marc F Benedetti and Vidal, Luciana and Tarik Meziane and Kim, Jung-Hyun and Bernardes, Marcelo C and Savoye, Nicolas and Deborde, Jonathan and Lima Souza, Edivaldo and Alb{\'e}ric, Patrick and Fernandes, Marcelo and de Souza, Landim and Roland, Fabio}
}
@article {3418,
	title = {Bacterial dynamics in a microphytobenthic biofilm: A tidal mesocosm approach},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	month = {09/2014},
	pages = {144-157},
	author = {H{\'e}l{\`e}ne Agogu{\'e} and Clarisse Mallet and Francis Orvain and Margot de Crignis and Fran{\c c}oise Mornet and Christine Dupuy}
}
@article {3264,
	title = {Cephalopods in neuroscience: regulations, research and the 3Rs.},
	journal = {Invert Neurosci},
	volume = {14},
	year = {2014},
	month = {2014 Mar},
	pages = {13-36},
	abstract = {<p>Cephalopods have been utilised in neuroscience research for more than 100\&nbsp;years particularly because of their phenotypic plasticity, complex and centralised nervous system, tractability for studies of learning and cellular mechanisms of memory (e.g. long-term potentiation) and anatomical features facilitating physiological studies (e.g. squid giant axon and synapse). On 1 January 2013, research using any of the about 700 extant species of "live cephalopods" became regulated within the European Union by Directive 2010/63/EU on the "Protection of Animals used for Scientific Purposes", giving cephalopods the same EU legal protection as previously afforded only to vertebrates. The Directive has a number of implications, particularly for neuroscience research. These include: (1) projects will need justification, authorisation from local competent authorities, and be subject to review including a harm-benefit assessment and adherence to the 3Rs principles (Replacement, Refinement and Reduction). (2) To support project evaluation and compliance with the new EU law, guidelines specific to cephalopods will need to be developed, covering capture, transport, handling, housing, care, maintenance, health monitoring, humane anaesthesia, analgesia and euthanasia. (3) Objective criteria need to be developed to identify signs of pain, suffering, distress and lasting harm particularly in the context of their induction by an experimental procedure. Despite diversity of views existing on some of these topics, this paper reviews the above topics and describes the approaches being taken by the cephalopod research community (represented by the authorship) to produce "guidelines" and the potential contribution of neuroscience research to cephalopod welfare.</p>
},
	keywords = {3Rs, Animal welfare, Cephalopods, Directive2010/63/EU, Neuroscience},
	issn = {1439-1104},
	doi = {10.1007/s10158-013-0165-x},
	author = {Fiorito, Graziano and Affuso, Andrea and Anderson, David B and Basil, Jennifer and Laure Bonnaud-Ponticelli and Botta, Giovanni and Cole, Alison and D{\textquoteright}Angelo, Livia and De Girolamo, Paolo and Dennison, Ngaire and Dickel, Ludovic and Di Cosmo, Anna and Di Cristo, Carlo and Gestal, Camino and Fonseca, Rute and Grasso, Frank and Kristiansen, Tore and Kuba, Michael and Maffucci, Fulvio and Manciocco, Arianna and Mark, Felix Christopher and Melillo, Daniela and Osorio, Daniel and Palumbo, Anna and Perkins, Kerry and Ponte, Giovanna and Raspa, Marcello and Shashar, Nadav and Smith, Jane and Smith, David and Sykes, Ant{\'o}nio and Villanueva, Roger and Tublitz, Nathan and Zullo, Letizia and Andrews, Paul}
}
@article {6885,
	title = {Cg-SoxE and Cg-β-catenin, two new potential actors of the sex-determining pathway in a hermaphrodite lophotrochozoan, the Pacific oyster Crassostrea gigas},
	journal = {Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology},
	volume = {167},
	year = {2014},
	pages = {68-76},
	abstract = {Sex determination is poorly known in mollusks, lophotrochozoa and most hermaphrodites. In the oyster Crassostrea gigas, an irregular successive hermaphrodite, sex determination may occur at the end of a gametogenetic cycle to prepare the next cycle. To investigate further into these aspects we have focused on orthologs of SoxE and β-catenin, key players of the male and female gonadic differentiation respectively in mammals. Based on phylogenetic analyses, Cg-SoxE, the oyster{\textquoteright}s SoxE ortholog, is closely related to vertebrate SoxE genes while Cg-β-catenin, the oyster{\textquoteright}s β-catenin ortholog, is classified amongst lophotrochozoa. The mRNA expression measured by qPCR in the gonadic area during a gametogenetic cycle is maximal for Cg-SoxE when sex is indiscernible and for Cg-β-catenin in mature females. Both expressions are localized from early germ cells to spermatocytes and pre-vitellogenic oocytes, and potentially in somatic cells. Cg-β-catenin is also expressed in vitellogenic oocytes. These actors may be involved in early oyster gonadic differentiation, which includes sex determination. Our results enhance the understanding of sex determination in C. gigas and in mollusks and they provide additional knowledge in compared genomics of reproduction and in molecular phylogeny.},
	keywords = {Gonadic differentiation, Oyster, Sex-determining pathways, Sox9, β-catenin},
	doi = {10.1016/j.cbpa.2013.09.018},
	url = {https://hal-normandie-univ.archives-ouvertes.fr/hal-02296496},
	author = {Santerre, Christelle and Sourdaine, Pascal and Adeline, B{\'e}atrice and Anne-Sophie Martinez}
}
@article {3490,
	title = {Characterisation and expression of the biomineralising gene Lustrin A during shell formation of the European abalone Haliotis tuberculata},
	journal = {Comparative Biochemistry and Physiology , Part B},
	volume = {169},
	year = {2014},
	month = {2014},
	pages = {1-8},
	type = {Research article},
	abstract = {<p>The molluscan shell is a remarkable product of a highly biomineralisation process, and is composed of calcium carbonate most commonly in the form of calcite or aragonite. The exceptional mechanical properties of this biomaterial are imparted by the embedded organic matrix which is secreted by the underlying mantle tissue. While many shell-matrix proteins have already been identified within adult molluscan shell, their presence and role in the early developmental stages of larval shell formation are not well understood. In the European abalone <em>Haliotis tuberculata</em>, the shell first forms in the early trochophore larva and develops into a mineralised protoconch in the veliger. Following metamorphosis, the juvenile shell rapidly changes as it becomes flattened and develops a more complex crystallographic profile including an external granular layer and an internal nacreous layer. Among the matrix proteins involved in abalone shell formation, Lustrin A is thought to participate in the formation of the nacreous layer. Here we have identified a partial cDNA coding for the <em>Lustrin A</em> gene in <em>H. tuberculata</em> and have analysed its spatial and temporal expression during abalone development. RT-PCR experiments indicate that <em>Lustrin A</em> is first expressed in juvenile (post-metamorphosis) stages, suggesting that Lustrin A is a component of the juvenile shell, but not of the larval shell. We also detected <em>Lustrin A</em> mRNAs in non-nacre forming cells at the distal-most edge of the juvenile mantle as well as in the nacre-forming region of the mantle. <em>Lustrin A</em> was also expressed in 7-day-old post-larvae, prior to the formation of nacre. These results suggest that Lustrin A plays multiple roles in the shell-forming process and further highlight the dynamic ontogenic nature of molluscan shell formation.</p>
},
	keywords = {biomineralisation, Haliotis tuberculata, larval development, Lustrin A, mollusc, organic matrix, shell},
	author = {Gaume, B{\'e}atrice and Denis, Fran{\c c}oise and Van Wormhoudt, Alain and Huchette, Sylvain and Jackson, Daniel and Avignon, Sol{\`e}ne and St{\'e}phanie Auzoux-Bordenave}
}
@article {Bosseboeuf_etal2014,
	title = {{Characterization of spermatogonial markers in the mature testis of the dogfish (<i>Scyliorhinus canicula L.</i>)}},
	journal = {Reproduction},
	volume = {147},
	number = {147},
	year = {2014},
	month = {01/2014},
	pages = {125{\textendash}139},
	author = {Bosseboeuf, A and Aude Gautier and Auvray, P and Mazan, S and Pascal Sourdaine}
}
@article {4126,
	title = {Diversity of cultivable fungi associated with Antarctic marine sponges and screening for their antimicrobial, antitumoral and antioxidant potential.},
	journal = {World J Microbiol Biotechnol},
	volume = {30},
	year = {2014},
	month = {2014 Jan},
	pages = {65-76},
	abstract = {<p>The diversity of sponge-associated fungi has been poorly investigated in remote geographical areas like Antarctica. In this study, 101 phenotypically different fungal isolates were obtained from 11 sponge samples collected in King George Island, Antarctica. The analysis of ITS sequences revealed that they belong to the phylum Ascomycota. Sixty-five isolates belong to the genera Geomyces, Penicillium, Epicoccum, Pseudeurotium, Thelebolus, Cladosporium, Aspergillus, Aureobasidium, Phoma, and Trichocladium but 36 isolates could not be identified at genus level. In order to estimate the potential of these isolates as producers of interesting bioactivities, antimicrobial, antitumoral and antioxidant activities of fungal culture extracts were assayed. Around 51\% of the extracts, mainly from the genus Geomyces and non identified relatives, showed antimicrobial activity against some of the bacteria tested. On the other hand, around 42\% of the extracts showed potent antitumoral activity, Geomyces sp. having the best performance. Finally, the potential of the isolated fungi as producers of antioxidant activity seems to be moderate. Our results suggest that fungi associated with Antarctic sponges, particularly Geomyces, would be valuable sources of antimicrobial and antitumoral compounds. To our knowledge, this is the first report describing the biodiversity and the metabolic potential of fungi associated with Antarctic marine sponges.</p>
},
	keywords = {Animals, Antarctic Regions, Anti-Bacterial Agents, Antineoplastic Agents, Antioxidants, Ascomycota, DNA, Ribosomal Spacer, Porifera, Sequence Analysis, DNA},
	issn = {1573-0972},
	doi = {10.1007/s11274-013-1418-x},
	author = {Henr{\'\i}quez, Marlene and Vergara, Karen and Norambuena, Javiera and Beiza, Andrea and Maza, Felipe and Ubilla, Pamela and Araya, Ivanna and Ch{\'a}vez, Renato and San-Mart{\'\i}n, Aurelio and Darias, Jos{\'e} and Darias, Maria and Vaca, Inmaculada}
}
@article {Personnic2014,
	title = {An ecosystem-based approach to assess the status of a mediterranean ecosystem, the Posidonia oceanica seagrass meadow},
	journal = {PLoS ONE},
	volume = {9},
	number = {6},
	year = {2014},
	note = {cited By 37},
	doi = {10.1371/journal.pone.0098994},
	url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0098994},
	author = {Personnic, S. and Boudouresque, C.F. and Astruch, P. and Ballesteros, E. and Blouet, S. and Bellan-Santini, D. and Bonhomme, P. and Thibault-Botha, D. and Eric Feunteun and Mireille Harmelin-Vivien and Pergent, G. and Pergent-Martini, C. and Pastor, J. and Poggiale, J.-C. and Renaud, F. and Thibaut, T. and Ruitton, S.}
}
@article {4125,
	title = {The effect of dietary oxidized lipid levels on growth performance, antioxidant enzyme activities, intestinal lipid deposition and skeletogenesis in Senegalese sole (Solea senegalensis) larvae},
	journal = {Aquaculture Nutrition},
	volume = {20},
	year = {2014},
	pages = {692{\textendash}711},
	abstract = {<p>Fish tissues, particularly rich in n-3 PUFA, are prone to lipid peroxidation that can damage cellular membranes, cause severe lesions and subsequently incidences of disease and mortality. However, fish possess antioxidant defences, such as vitamin E (VE) and antioxidant enzymes, to protect them against oxidative damage. This study investigated the effects of an increasing gradient of oxidized dietary lipid on the survival, growth performance, skeletogenesis and antioxidant defensive processes occurring in Senegalese sole (Solea senegalensis) larvae. Four groups of fish were fed live prey enriched with experimental emulsions containing an increasing gradient of oxidized oil: non-oxidized, NO+VE, 34.5\&nbsp;nmol MDA g-1 w.w.; mildly oxidized, MO+VE, 43.1\&nbsp;nmol MDA g-1 w.w.; highly oxidized, HO+VE, 63.3\&nbsp;nmol MDA g-1 w.w. and highly oxidized without VE, HO-VE, 78.8\&nbsp;nmol MDA g-1 w.w. The oxidation levels increased in enriched rotifers following the oxidation gradient of the emulsions, but were not affected in enriched Artemia metanauplii. The oxidation status of Senegalese sole larvae increased during development, but this was not related to the dietary treatments. The increasing dietary oxidation levels did not affect the fatty acid profile, survival, growth performance and metamorphosis processes of sole larvae. Senegalese sole seem to activate antioxidant defence mechanisms in response to the increasing amounts of dietary peroxidized lipids, in a manner efficiently enough to prevent detection of any alterations of these physiological processes. Antioxidant systems and detoxification mechanisms appeared to occur through the consumption of dietary α-tocopherol, the activation of the antioxidant enzymes (catalase, superoxide dismutase, glutathione S-transferase, glutathione reductase) and the retention of oxidized fat in the intestinal enterocytes for detoxification prior to their utilization. However, fish fed the highest oxidized diet presented a reduction in bone mineralization, but lower incidence of deformities in the vertebral and caudal regions than fish fed the other diets. This study exemplifies the importance of rearing Senegalese sole larvae on non-oxidized diets during the early larval development to avoid detrimental consequences in older fish, most notably in the process of skeletogenesis.</p>
},
	keywords = {antioxidant enzymes, lipid peroxidation, live prey enrichment, skeletogenesis, Solea senegalensis larvae, vitamin E},
	issn = {1365-2095},
	doi = {10.1111/anu.12123},
	url = {http://dx.doi.org/10.1111/anu.12123},
	author = {Boglino, A and Darias, Maria and Est{\'e}vez, A and Andree, K B and Sarasquete, Carmen and Ortiz-Delgado, Juan Bosco and Sol{\'e}, M and Gisbert, E}
}
@article {3414,
	title = {Effects of CO2, nutrients and light on coastal plankton: II. Metabolic rates. Aquatic Biology},
	journal = {Aquatic Biology},
	volume = {22},
	year = {2014},
	month = {11/20/14},
	pages = {43-57},
	abstract = {We conducted a microcosm experiment aimed at studying the interactive effects
of high CO2, nutrient loading and irradiance on the metabolism of a planktonic community
sampled in the Western Mediterranean near the coast of M{\'a}laga. Changes in the metabolism
of phytoplankton and bacterioplankton were observed for 7 d under 8 treatment conditions,
representing the full factorial combinations of 2 levels each of CO2, nutrient concentration
and solar radiation exposure. The initial plankton sample was collected at the surface from
a stratified water column, indicating that phytoplankton were naturally acclimated to high
irradiance and low nutrient concentrations. Nutrient addition combined with high irradiance
resulted in a significant increase in primary production. Nitrate uptake by phytoplankton was
also stimulated under high nutrient conditions. High nutrients, high irradiance and the combination
of low CO2 and high irradiance positively affected bacterial production. Light was the
main factor affecting the respiration rates of the community, which were higher at the high
light level. After 7 d of incubation, nutrient loading was the only factor that significantly
affected the amount of particulate organic carbon (POC) accumulated in the microcosms.
Therefore, the changes in metabolic rates produced at high CO2 had no effect on net production
of particulate organic matter. If these results are extrapolated to the natural environment,
it could be hypothesized that high levels of CO2 will have a limited impact on biological
pump activity in the northern Alboran Sea since it is assumed that POC export towards deeper
layers determines the potential for carbon sequestration.},
	author = {Mercado, J. M. and Sobrino, C and Neale, P.J. and Segovia, M. and Reul, A. and Amorim, A.L. and Carrillo, P and Pascal Claquin and Cabrerizo, M.J and Le{\'o}n, P. and Lorenzo, M.R and Medina, J. M. and Montecino, V. and Napol{\'e}on, C and Prasil, 0. and Putzeys, S and Salles, S and Yebra, L}
}
@article {4132,
	title = {The effects of dietary arachidonic acid on bone in flatfish larvae: the last but not the least of the essential fatty acids},
	journal = {Journal of Applied Ichthyology},
	volume = {30},
	year = {2014},
	pages = {643{\textendash}651},
	abstract = {<p>Flatfish can provide a reliable model to study developmental disorders in bone tissues occurring during morphogenesis in response to nutritional imbalances. To date, most studies dealing with the effect of dietary essential fatty acids (EFA) on skeletogenesis in fish have focused their investigation on the role of docohexanoic (22:6n-3, DHA) and eicosapentaenoic (20:5n{\textendash}3, EPA) acids, but only a few have focused on investigating the effects of arachidonic acid (20:4n{\textendash}6, ARA) on bone during fish larval development. Bone development and composition at larval stage have been demonstrated to be highly sensitive to dietary levels of EFA, in particular the EPA and ARA acids, both precursors for highly bioactive eicosanoids presenting opposite effects on bone metabolism. Since fish are not able to synthesize EFA, they need to obtain them from the diet. However, dietary imbalances in EPA and ARA in flatfish larvae may disrupt bone formation and osteoblast differentiation in skeletal tissues, leading to the incidence of skeletal deformities, reduced mineralization and problems of bone remodelling in the cranial region associated with impaired eye migration. These anomalies in skeletal structures are one of the most important factors that affect flatfish larval quality and hamper their production. Thus, we have reviewed the current state of knowledge about the effects of dietary ARA contents on skeletogenesis in Senegalese sole (Solea senegalensis), one of the main flatfish species cultured in Europe. Their larval quality still suffers for a high incidence of skeletal anomalies induced by dietary imbalances during metamorphosis.</p>
},
	issn = {1439-0426},
	doi = {10.1111/jai.12511},
	url = {http://dx.doi.org/10.1111/jai.12511},
	author = {Boglino, A and Darias, Maria and Andree, K B and Est{\'e}vez, A and Gisbert, E}
}
@article {4133,
	title = {The effects of dietary arachidonic acid on Senegalese sole morphogenesis: A synthesis of recent findings},
	journal = {Aquaculture},
	volume = {432},
	year = {2014},
	pages = {443 - 452},
	abstract = {<p>Abstract In this study we evaluated the effects of high dietary arachidonic acid (ARA) levels on prostaglandin \{E2\} (PGE2) and \{E3\} (PGE3) production and their effect on two morphogenetic processes occurring during metamorphosis: the establishment of the juvenile pigmentation pattern and eye migration and remodeling of cranial bones. In this sense, Senegalese sole larvae were fed from 2 to 50 days post-hatch (dph) with live prey enriched with an experimental emulsion containing high levels of \{ARA\} (ARA-H; 10.2 and 7.1\% \{TFA\} in enriched rotifer and Artemia, respectively) versus a reference commercial enriching product (Algamac 3050{\textregistered}, AGM; 1.0 and 1.4\% \{TFA\} in enriched rotifer and Artemia, respectively). High dietary \{ARA\} levels did not affect larval growth performance at 50 dph, but significantly induced malpigmentation (81.4 {\textpm} 7.5\%, versus 0.9 {\textpm} 0.3\% in larvae fed the \{AGM\} diet). This malpigmentation was linked to the higher prostaglandin \{E2\} (PGE2) levels observed in pseudo-albino fish as compared to normally pigmented individuals. The \{PGE2\} levels were higher in normally pigmented specimens fed the ARA-H diet than in those fed the \{AGM\} diet. The effects of \{ARA\} on normally pigmented fish fed the \{AGM\} diet and pseudo-albino specimens fed the ARA-H diet were evaluated by means of the density of melanophores and the texture and image segmentation analyses in the dorsal skin of post-metamorphic fish. The skin of pseudo-albino specimens had a more uniform and homogeneous melanophore pattern than normally pigmented fish. Melanophores in pseudo-albino specimens were less abundant and not so aggregated in patches as they were in normally pigmented ones, whereas their shape differed (round vs. dendritic) suggesting their inability to disperse melanin. In addition, fish fed the ARA-H diet presented a higher percentage of cranial deformities (95.1 {\textpm} 1.5\%) than those fed the control diet (1.9 {\textpm} 1.9\%) that was significantly and negatively correlated with the incidence of normally-pigmented animals (R2 = - 0.88, P \&lt; 0.001). Cranial deformities in pseudo-albino fish were associated with an impaired migration of the eye from the ocular side (the right eye), whereas the left eye migrated from the blind side into the ocular side almost normally. The effects of high dietary \{ARA\} levels in the eye migration and cranial bone remodeling processes in post-metamorphic larvae were evaluated by means of the staining of cranial skeletal elements. Pseudo-albino fish showed higher interocular distance and head height than normally pigmented individuals, a different disposition of the eyes with regard to the vertebral column and mouth axes, and a distinct osteological development of some skeletal structures from the neuro- and splanchnocranium, in relation to high dietary \{ARA\} contents and high \{PGE2\} production. These results brought new information about possible nutritional forcing factors and physiological mechanisms of pigmentary disorders and impaired eye migration, which are current major bottlenecks in flatfish aquaculture.</p>
},
	keywords = {Skeletal deformities},
	issn = {0044-8486},
	doi = {http://dx.doi.org/10.1016/j.aquaculture.2014.05.007},
	url = {http://www.sciencedirect.com/science/article/pii/S0044848614002233},
	author = {Boglino, A and Wishkerman, A and Darias, Maria and de la Iglesia, P and Est{\'e}vez, A and Andree, K B and Gisbert, E}
}
@article {Wahlberg201432,
	title = {Evidence of marine mammal predation of the European eel (Anguilla anguilla L.) on its marine migration},
	journal = {Deep-Sea Research Part I: Oceanographic Research Papers},
	volume = {86},
	year = {2014},
	note = {cited By 30},
	pages = {32-38},
	doi = {10.1016/j.dsr.2014.01.003},
	url = {https://www.sciencedirect.com/science/article/pii/S0967063714000077},
	author = {Wahlberg, M. and Westerberg, H. and Aarestrup, K. and Eric Feunteun and Gargan, P. and Righton, D.}
}
@article {Saint-B{\'e}at2014144,
	title = {How does the resuspension of the biofilm alter the functioning of the benthos-pelagos coupled food web of a bare mudflat in Marennes-Ol{\'e}ron Bay (NE Atlantic)?},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	note = {cited By 17},
	pages = {144-157},
	doi = {10.1016/j.seares.2014.02.003},
	url = {https://www.sciencedirect.com/science/article/pii/S138511011400029X},
	author = {Saint-B{\'e}at, B. and Christine Dupuy and Agogu{\'e}, H. and Alexandre Carpentier and Chalumeau, J. and Como, S. and David, V. and De Crignis, M. and Duch{\^e}ne, J.-C. and Fontaine, C. and Eric Feunteun and Katell Guizien and Hartmann, H. and Lavaud, J. and S{\'e}bastien Lefebvre and Lefran{\c c}ois, C. and Mallet, C. and Montani{\'e}, H. and Mouget, J.-L. and Francis Orvain and Ory, P. and Pascal, P.-Y. and Radenac, G. and Richard, P. and V{\'e}zina, A.F. and Nathalie Niquil}
}
@article {5051,
	title = {How does the resuspension of the biofilm alter the functioning of the benthos{\textendash}pelagos coupled food web of a bare mudflat in Marennes-Ol{\'e}ron Bay (NE Atlantic)?},
	journal = {Journal of sea research},
	volume = {92},
	year = {2014},
	pages = {144{\textendash}157},
	author = {Saint-B{\'e}at, B and Christine Dupuy and Agogue, Helene and Alexandre Carpentier and Chalumeau, J and Como, Serena and David, Val{\'e}rie and Margot de Crignis and Duch{\^e}ne, J C and Fontaine, C and others}
}
@article {3598,
	title = {Interacting Regional Scale Regime Shifts for Biodiversity and Ecosystem Services},
	journal = {BioScience},
	volume = {64},
	year = {2014},
	month = {08/2014},
	pages = {665-679},
	doi = {doi: 10.1093/biosci/biu093},
	author = {P. Leadley and V. Proen{\c c}a and Juan F. Fern{\'a}ndez-Manjarr{\'e}s and H.M. Pereira and R. Alkemade and R. Biggs and E. Bruley and W. Cheung and D. Cooper and J. Figueiredo and E. Gilman and S. Gu{\'e}nette and G. Hurtt and C. Mbow and Thierry Oberdorff and C. Revenga and J. Scharlemann and R. Scholes and M. Stafford-Smith and R. Sumaila and M. Walpole}
}
@article {6832,
	title = {Irreplaceable area extends marine conservation hotspot off Tunisia: insights from GPS-tracking Scopoli{\textquoteright}s shearwaters from the largest seabird colony in the Mediterranean},
	journal = {Marine biology},
	volume = {161},
	year = {2014},
	pages = {2669{\textendash}2680},
	author = {Gr{\'e}millet, David and Clara P{\'e}ron and Pons, Jean-Baptiste and Ouni, Rhida and Authier, Matthieu and Th{\'e}venet, Matthieu and Fort, J{\'e}r{\^o}me}
}
@article {3497,
	title = {Maintenance of potential spermatogonial stem cells in vitro by GDNF treatment in a chondrichthyan model (Scyliorhinus canicula L.).},
	journal = {Biol Reprod},
	volume = {91},
	year = {2014},
	month = {2014 Oct},
	pages = {91},
	abstract = {<p>Previous work in dogfish, Scyliorhinus canicula, has identified the testicular germinative area as the spermatogonial stem cell niche. In the present study, an in vitro co-culture system of spermatogonia and somatic cells from the germinative area was developed. Long-term maintenance of spermatogonia has been successful, and addition of GDNF has promoted the development of clones of spermatogonia expressing stem cell characteristics such as alkaline phosphatase activity and has allowed maintenance of self-renewal in spermatogonia for at least 5 mo under culture conditions, notably by decreasing cell apoptosis. Furthermore, clones of spermatogonia expressed the receptor of GDNF, GFRalpha1, which is consistent with the effect of GDNF on cells despite the lack of identification of a GDNF sequence in the dogfish{\textquoteright}s transcriptome. However, a sequence homologous to artemin has been identified, and in silico analysis supports the hypothesis that artemin could replace GDNF in the germinative area in dogfish. This study, as the first report on long-term in vitro maintenance of spermatogonia in a chondrichthyan species, suggests that the GFRalpha1 signaling function in self-renewal of spermatogonial stem cells is probably conserved in gnathostomes.</p>
},
	issn = {1529-7268},
	doi = {10.1095/biolreprod.113.116020},
	author = {Aude Gautier and Bosseboeuf, A and Auvray, P and Pascal Sourdaine}
}
@article {Bultel201423,
	title = {Migration behaviour of silver eels (Anguilla anguilla) in a large estuary of Western Europe inferred from acoustic telemetry},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {137},
	number = {1},
	year = {2014},
	note = {cited By 31},
	pages = {23-31},
	doi = {10.1016/j.ecss.2013.11.023},
	url = {https://www.sciencedirect.com/science/article/pii/S0272771413005155},
	author = {Bultel, E. and Lasne, E. and Anthony Acou and Guillaudeau, J. and Bertier, C. and Eric Feunteun}
}
@article {Trancart2014181,
	title = {Modeling marine shad distribution using data from French bycatch fishery surveys},
	journal = {Marine Ecology Progress Series},
	volume = {511},
	year = {2014},
	note = {cited By 6},
	pages = {181-192},
	doi = {10.3354/meps10907},
	url = {http://www.int-res.com/abstracts/meps/v511/p181-192/},
	author = {Thomas Trancart and Rochette, S. and Anthony Acou and Lasne, E. and Eric Feunteun}
}
@article {3487,
	title = {Multiscale patterns in the diversity and organization of benthic intertidal fauna among French Atlantic estuaries},
	journal = {Journal of Sea Research},
	volume = {90},
	year = {2014},
	month = {07/2014},
	pages = {95 - 110},
	abstract = {<p>Based on a parallel sampling conducted during autumn 2008, a comparative study of the intertidal benthic macrofauna among 10 estuarine systems located along the Channel and Atlantic coasts of France was performed in order to assess the level of fauna similarity among these sites and to identify possible environmental factors involved in the observed pattern at both large (among sites) and smaller (benthic assemblages) scales. More precisely this study focused on unraveling the observed pattern of intertidal benthic fauna composition and diversity observed at among-site scale by exploring both biotic and abiotic factors acting at the among- and within-site scales. Results showed a limited level of similarity at the among-site level in terms of intertidal benthic fauna composition and diversity. The observed pattern did not fit with existing transitional water classification methods based on fish or benthic assemblages developed in the frame of the European Water Framework Directive (WFD). More particularly, the coastal plain estuaries displayed higher among-site similarity compared to ria systems. These coastal plain estuaries were characterized by higher influence of river discharge, lower communication with the ocean and high suspended particulate matter levels. On the other hand, the ria-type systems were more dissimilar and different from the coastal plain estuaries. The level of similarity among estuaries was mainly linked to the relative extent of the intertidal {\textquotedblleft}Scrobicularia plana{\textendash}Cerastoderma edule{\textquotedblright} and {\textquotedblleft}Tellina tenuis{\textquotedblright} or {\textquotedblleft}Venus{\textquotedblright} communities as a possible consequence of salinity regime, suspended matter concentrations and fine particles supply with consequences on the trophic functioning, structure and organization of benthic fauna. Despite biogeographical patterns, the results also suggest that, in the context of the WFD, these estuaries should only be compared on the basis of the most common intertidal habitat occurring throughout all estuarine systems and that the \{EUNIS\} biotope classification might be used for this purpose. In addition, an original inverse relation between γ-diversity and area was shown; however, its relevance might be questioned.</p>
},
	keywords = {Diversity, Estuaries, Macrozoobenthos, Structuring Factors, WFD},
	issn = {1385-1101},
	doi = {http://dx.doi.org/10.1016/j.seares.2014.02.014},
	url = {http://www.sciencedirect.com/science/article/pii/S1385110114000495},
	author = {Hugues Blanchet and Beno{\^\i}t Gouillieux and Sandrine Alizier and Jean-Michel Amouroux and Guy Bachelet and Anne-Laure Barill{\'e} and Jean-Claude Dauvin and Xavier de Montaudouin and Val{\'e}rie Derolez and Nicolas Desroy and Jacques Grall and Antoine Gr{\'e}mare and Pascal Hacquebart and J{\'e}r{\^o}me Jourde and C{\'e}line Labrune and Nicolas Lavesque and Antoine Meirland and Thiebaut Nebout and Fr{\'e}d{\'e}ric Olivier and Corine Pelaprat and Thierry Ruellet and Pierre-Guy Sauriau and S{\'e}bastien Thorin}
}
@article {3392,
	title = {NEUROGENESIS IN CEPHALOPODS: {\textquotedblleft}ECO-EVO-DEVO{\textquotedblright} APPROACH IN THE CUTTLEFISH SEPIA OFFICINALIS (MOLLUSCA-CEPHALOPODA)},
	journal = {Journal of Marine Science and Technology, Taiwan},
	volume = {22},
	year = {2014},
	pages = {15-24},
	abstract = {<p>Cephalopods are new evolutionary and ecological models.<br />
By their phylogenetic position (Lophotrochozoa, Mollusca),<br />
they provide a missing master piece in the whole puzzle of<br />
neurodevelopment studies. Their derived and specific nervous<br />
system but also their convergence with vertebrates offer<br />
abundant materials to question the evolution and development<br />
of the nervous system of Metazoa (evo-devo studies). In<br />
addition, their various adaptions to different modes of life<br />
open new fields of investigation of developmental plasticity<br />
according to ecological context (eco-evo-devo approach). In<br />
this paper, we review the recent works on cephalopod nervous<br />
developmental investigations. We show how cephalopods, and<br />
especially Sepia officinalis, an animal of economical interest,<br />
can be used as suitable models to extend our knowledge on<br />
cephalopod ecology and on nervous system evolution among<br />
molluscs.</p>
},
	author = {Navet, S and S{\'e}bastien Baratte and Yann Bassaglia and Aude Andouche and Buresi, Auxane and Laure Bonnaud-Ponticelli}
}
@article {4144,
	title = {Senegalese sole (Solea senegalensis) metamorphic larvae are more sensitive to pseudo-albinism induced by high dietary arachidonic acid levels than post-metamorphic larvae},
	journal = {Aquaculture},
	volume = {433},
	year = {2014},
	pages = {276 - 287},
	abstract = {<p>Abstract High dietary levels of arachidonic acid (ARA) and its relative proportions with eicosapentaenoic acid (EPA), fed during early larval stages, have been associated with malpigmentation in various flatfish species. This study investigated whether the nutritional induction of pigmentary disorders at larval stages was related to a specific larval period of increased sensitivity to \{ARA\} in Senegalese sole (Solea senegalensis Kaup, 1858). Senegalese sole larvae were fed high dietary \{ARA\} levels during pre- and pro-metamorphosis (2{\textendash}15 dph) and/or post-metamorphosis (15{\textendash}50 dph). Larval tissues reflected the dietary fatty acid composition. Malpigmentations were significantly related to elevated dietary and larval \{ARA\} contents and ARA/EPA ratio. This study reports evidence for a {\textquotedblleft}pigmentation window{\textquotedblright}, with a higher larval sensitivity to dietary \{ARA\} during pre- and pro-metamorphosis than post-metamorphosis. High dietary \{ARA\} fed to larvae during pre-metamorphosis enhanced survival, but did not affect growth nor eye migration. The aspect and density of melanophores in the skin of the ocular side of ARA-induced pseudo-albinos were significantly reduced in comparison to normally pigmented individuals, even more in the pseudo-albino fish fed high dietary \{ARA\} levels during the pre-metamorphic stage. Pseudo-albino fish fed high dietary \{ARA\} levels during post-metamorphosis showed higher concentrations of 2- and 3-series prostaglandins (PGE2 and PGE3) than normally pigmented specimens fed the same diets. An increased sensitivity to ARA-induced malpigmentations has been identified at pre-metamorphosis and early metamorphosis in Senegalese sole. Supplying high dietary \{ARA\} amounts imbalanced the dietary ARA/EPA ratio and disrupted the relative concentrations of derived \{PGE2\} and PGE3, resulting in 20 to 81.7\% pseudo-albino individuals, depending on the dietary treatment. The administration of high levels of dietary \{ARA\} at different developmental stages did not only affect the incidence of animals with pigmentary disorders, but it also affect the melanophore density and skin aspect in normally pigmented and pseudoalbino fish as image segmentation and texture analyses indicated.</p>
},
	keywords = {Prostaglandins},
	issn = {0044-8486},
	doi = {http://dx.doi.org/10.1016/j.aquaculture.2014.06.012},
	url = {http://www.sciencedirect.com/science/article/pii/S0044848614003056},
	author = {Boglino, A and Wishkerman, A and Darias, Maria and de la Iglesia, P and Andree, K B and Gisbert, E and Est{\'e}vez, A}
}
@article {3430,
	title = {The skeleton of the staghorn coral Acropora millepora: molecular and structural characterization.},
	journal = {PLoS One},
	volume = {9},
	year = {2014},
	month = {2014},
	pages = {e97454},
	abstract = {<p>The scleractinian coral Acropora millepora is one of the most studied species from the Great Barrier Reef. This species has been used to understand evolutionary, immune and developmental processes in cnidarians. It has also been subject of several ecological studies in order to elucidate reef responses to environmental changes such as temperature rise and ocean acidification (OA). In these contexts, several nucleic acid resources were made available. When combined to a recent proteomic analysis of the coral skeletal organic matrix (SOM), they enabled the identification of several skeletal matrix proteins, making A. millepora into an emerging model for biomineralization studies. Here we describe the skeletal microstructure of A. millepora skeleton, together with a functional and biochemical characterization of its occluded SOM that focuses on the protein and saccharidic moieties. The skeletal matrix proteins show a large range of isoelectric points, compositional patterns and signatures. Besides secreted proteins, there are a significant number of proteins with membrane attachment sites such as transmembrane domains and GPI anchors as well as proteins with integrin binding sites. These features show that the skeletal proteins must have strong adhesion properties in order to function in the calcifying space. Moreover this data suggest a molecular connection between the calcifying epithelium and the skeletal tissue during biocalcification. In terms of sugar moieties, the enrichment of the SOM in arabinose is striking, and the monosaccharide composition exhibits the same signature as that of mucus of acroporid corals. Finally, we observe that the interaction of the acetic acid soluble SOM on the morphology of in vitro grown CaCO3 crystals is very pronounced when compared with the calcifying matrices of some mollusks. In light of these results, we wish to commend Acropora millepora as a model for biocalcification studies in scleractinians, from molecular and structural viewpoints.</p>
},
	keywords = {Acetic Acid, Amination, Animals, Anthozoa, Bone and Bones, Calcium Carbonate, Crystallization, Gels, Monosaccharides, Proteins, Solubility, Spectroscopy, Fourier Transform Infrared, Spectrum Analysis, Raman},
	issn = {1932-6203},
	doi = {10.1371/journal.pone.0097454},
	author = {Ramos-Silva, Paula and Kaandorp, Jaap and Herbst, Fr{\'e}d{\'e}ric and Plasseraud, Laurent and Alcaraz, G and Stern, Christine and Corneillat, Marion and Guichard, N and Durlet, Christophe and Gilles Luquet and Marin, F}
}
@article {3417,
	title = {Structures of benthic prokaryotic communities and their hydrolytic enzyme activities resuspended from samples of intertidal mudflats: An experimental approach},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	month = {09/2014},
	pages = {158-169},
	author = {Clarisse Mallet and H{\'e}l{\`e}ne Agogu{\'e} and Fr{\'e}d{\'e}rique Bonnemoy and Katell Guizien and Francis Orvain and Christine Dupuy}
}
@article {4512,
	title = {Temperature modulates the progression of vitellogenesis in the European eel},
	journal = {Aquaculture},
	volume = {434},
	year = {2014},
	pages = {38-47},
	author = {Mazzeo, I and Penaranda, David S and Gallego, Victor and Sylvie Baloche and Nourizadeh-Lillabadi, R and Tveiten, Helge and Sylvie Dufour and Asturiano, Juan F and Weltzien, Finn-Arne and Perez, Luz}
}
@article {6834,
	title = {Windscape and tortuosity shape the flight costs of northern gannets},
	journal = {Journal of Experimental Biology},
	volume = {217},
	year = {2014},
	pages = {876{\textendash}885},
	doi = {10.1242/jeb.097915 },
	url = {https://jeb.biologists.org/content/217/6/876.short},
	author = {Am{\'e}lineau, Fran{\c c}oise and Clara P{\'e}ron and Lescro{\"e}l, Am{\'e}lie and Authier, Matthieu and Provost, Pascal and Gr{\'e}millet, David}
}
@article {8587,
	title = {Beach morphological changes in response to marine turtles nesting: a preliminary study of Awala-Yalimapo beach, French Guiana (South America)},
	journal = {Journal of Coastal Research},
	volume = {65},
	year = {2013},
	month = {Feb-01-2013},
	pages = {99 - 104},
	issn = {0749-0208},
	doi = {10.2112/SI65-018.1},
	url = {http://www.bioone.org/doi/10.2112/SI65-018.1},
	author = {P{\'e}ron, Christina and Chevallier, Damien and Galpin, Martin and Chatelet, Andy and Anthony, Edward J. and Le Maho, Yvon and Gardel, Antoine}
}
@article {6836,
	title = {Designing observational biologging studies to assess the causal effect of instrumentation},
	journal = {Methods in Ecology and Evolution},
	volume = {4},
	year = {2013},
	pages = {802{\textendash}810},
	doi = { https://doi.org/10.1111/2041-210X.12075},
	url = {https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12075},
	author = {Authier, Matthieu and Clara P{\'e}ron and Mante, Alain and Vidal, Patrick and Gr{\'e}millet, David}
}
@article {7331,
	title = {Highly Dynamic Cellular-Level Response of Symbiotic Coral to a Sudden Increase in Environmental NitrogenABSTRACT},
	journal = {mBio},
	volume = {4},
	year = {2013},
	month = {Jan-07-2013},
	doi = {10.1128/mBio.00052-13},
	url = {https://mbio.asm.org/content/4/3/e00052-13},
	author = {Kopp, C. and Pernice, M. and Domart-Coulon, I. and Djediat, C. and Spangenberg, J. E. and Alexander, D. T. L. and Hignette, M. and Tarik Meziane and Meibom, A.},
	editor = {Orphan, Victoria and McFall-Ngai, Margaret J.}
}
@article {6835,
	title = {Importance of coastal Marine Protected Areas for the conservation of pelagic seabirds: The case of Vulnerable yelkouan shearwaters in the Mediterranean Sea},
	journal = {Biological conservation},
	volume = {168},
	year = {2013},
	pages = {210{\textendash}221},
	author = {Clara P{\'e}ron and Gr{\'e}millet, David and Prudor, Aur{\'e}lien and Pettex, Emeline and Saraux, Claire and Soriano-Redondo, Andrea and Authier, Matthieu and Fort, J{\'e}r{\^o}me}
}
@article {7356,
	title = {Seasonal Variations in Maternal Provisioning of Crepidula fornicata (Gastropoda): Fatty Acid Composition of Females, Embryos and Larvae},
	journal = {PLoS ONE},
	volume = {8},
	year = {2013},
	month = {Dec-09-2014},
	pages = {e75316},
	doi = {10.1371/journal.pone.007531610.137},
	url = {https://dx.plos.org/10.1371/journal.pone.0075316},
	author = {Leroy, Fanny and Tarik Meziane and Riera, Pascal and Comtet, Thierry},
	editor = {Anil, Arga~Chandrashekar}
}
@article {7341,
	title = {Responses of juvenile sea bass, Dicentrarchus labrax, exposed to acute concentrations of crude oil, as assessed by molecular and physiological biomarkers},
	journal = {Chemosphere},
	volume = {87},
	year = {2012},
	month = {Jan-05-2012},
	pages = {692 - 702},
	issn = {00456535},
	doi = {10.1016/j.chemosphere.2011.12.059},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0045653511014287},
	author = {Kerambrun, E. and Le Floch, S. and Sanchez, W. and Thomas Guyon, H. and Tarik Meziane and Henry, F. and Amara, R.}
}
@article {6856,
	title = {Un r{\'e}seau de surveillance des littoraux face au changement climatique en milieu insulaire tropical : l{\textquoteright}exemple de Mayotte},
	journal = {VertigO},
	year = {2011},
	month = {Jul-01-2012},
	doi = {10.4000/vertigo10.4000/vertigo.1047110.4000/vertigo.10512},
	url = {http://vertigo.revues.org},
	author = {Jeanson, Matthieu and Franck Dolique and Anthony, Edward J.}
}
@article {8593,
	title = {Human activity and the drying up of rivers determine abundance and spatial distribution of Black Storks Ciconia nigra on their wintering grounds},
	journal = {Bird Study},
	volume = {57},
	year = {2010},
	month = {May-08-2012},
	pages = {369 - 380},
	issn = {0006-3657},
	doi = {10.1080/00063651003678467},
	url = {https://www.tandfonline.com/doi/full/10.1080/00063651003678467},
	author = {Chevallier, Damien and Le Maho, Yvon and Baillon, Fran{\c c}ois and Duponnois, Robin and Dieulin, Claudine and Brossault, Paul and De Franclieu, Philippe and Lorge, Patric and Aurouet, Axel and Massemin, Sylvie}
}
@article {8592,
	title = {Influence of weather conditions on the flight of migrating black storks},
	journal = {Proceedings of the Royal Society B: Biological Sciences},
	volume = {277},
	year = {2010},
	month = {Oct-09-2011},
	pages = {2755 - 2764},
	issn = {0962-8452},
	doi = {10.1098/rspb.2010.0422},
	url = {https://royalsocietypublishing.org/doi/10.1098/rspb.2010.0422},
	author = {Chevallier, D. and Handrich, Y. and Georges, J.-Y. and Baillon, F. and Brossault, P. and Aurouet, A. and Le Maho, Y. and Massemin, S.}
}
@article {6843,
	title = {Interdecadal changes in at-sea distribution and abundance of subantarctic seabirds along a latitudinal gradient in the Southern Indian Ocean},
	journal = {Global Change Biology},
	volume = {16},
	year = {2010},
	pages = {1895{\textendash}1909},
	doi = {10.1111/j.1365-2486.2010.02169.x},
	url = {https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-2486.2010.02169.x},
	author = {Clara P{\'e}ron and Authier, Matthieu and Barbraud, C. and DELORD, Karine and Besson, Dominique and WEIMERSKIRCH, Henri}
}
@article {6886,
	title = {Study of the potential spermatogonial stem cell compartment in dogfish testis, Scyliorhinus canicula L.},
	journal = {Cell and Tissue Research},
	volume = {332},
	year = {2008},
	pages = {533-542},
	abstract = {In the lesser-spotted dogfish (Scyliorhinus canicula), spermatogenesis takes place within spermatocysts made up of Sertoli cells associated with stage-synchronized germ cells. As shown in testicular cross sections, cysts radiate in maturational order from the germinative area, where they are formed, to the opposite margin of the testis, where spermiation occurs. In the germinative zone, which is located in a specific area between the tunica albuginea of the testis and the dorsal testicular vessel, individual large spermatogonia are surrounded by elongated somatic cells. The aim of this study has been to define whether these spermatogonia share characteristics with spermatogonial stem cells described in vertebrate and non-vertebrate species. We have studied their ultrastructure and their mitotic activity by 5{\textquoteright}-bromo-2{\textquoteright}-deoxyuridine (BrdU) incorporation and proliferating cell nuclear antigen (PCNA) immunodetection. Additionally, immunodetection of c-Kit receptor, a marker of differentiating spermatogonia in rodents, and of alpha- and beta-spectrins, as constituents of the spectrosome and the fusome, has been performed. Ultrastructurally, nuclei of stage I spermatogonia present the same mottled aspect in dogfish as undifferentiated spermatogonia nuclei in rodents. Moreover, intercellular bridges are not observed in dogfish spermatogonia, although they are present in stage II spermatogonia. BrdU and PCNA immunodetection underlines their low mitotic activity. The presence of a spectrosome-like structure, a cytological marker of the germline stem cells in Drosophila, has been observed. Our results constitute the first step in the study of spermatogonial stem cells and their niche in the dogfish.},
	keywords = {Lesser-spotted dogfish - Scyliorhinus canicula (Elasmobrachii), Spermatogenesis, Spermatogonia},
	doi = {10.1007/s00441-008-0590-z},
	url = {https://hal-normandie-univ.archives-ouvertes.fr/hal-02296550},
	author = {Loppion, Geraldine and Crespel, Am{\'e}lie and Anne-Sophie Martinez and Auvray, Pierr{\"\i}ck and Sourdaine, Pascal}
}
@article {7325,
	title = {Growth and condition indices in juvenile sole Solea solea measured to assess the quality of essential fish habitat},
	journal = {Marine Ecology Progress Series},
	volume = {351},
	year = {2007},
	month = {Jun-12-2007},
	pages = {201 - 208},
	issn = {0171-8630},
	doi = {10.3354/meps07154},
	url = {http://www.int-res.com/abstracts/meps/v351/p201-208/},
	author = {Amara, R and Tarik Meziane and Gilliers, C and Hermel, G and Laffargue, P}
}
@article {9185,
	title = {DNA barcoding of two amphidromous goby post-larvae (penja) morphotypes from Mandar River, West Sulawesi, Indonesia.},
	volume = {45},
	year = {201},
	month = {08/2021},
	pages = {243-249},
	author = {Nurjirana and Philippe Keith and Burhanuddin, A I and Afrisal, Muhammad and Haris, A}
}
