@article {9577,
	title = {Amphidromous shrimps (Decapoda: Caridea): current knowledge and future research},
	journal = {Journal of Crustacean Biology},
	volume = {44},
	year = {2024},
	month = {Feb-09-2024},
	type = {Review article},
	issn = {0278-0372},
	doi = {10.1093/jcbiol/ruae003},
	url = {https://academic.oup.com/jcb/article-abstract/44/1/ruae003/7604398?redirectedFrom=fulltext\&login=false},
	author = {de Mazancourt, Valentin and Ravaux, Juliette}
}
@article {9592,
	title = {Demography of endangered juvenile green turtles in face of environmental changes: 10 years of capture-mark-recapture efforts in Martinique},
	journal = {Biological Conservation},
	volume = {291},
	year = {2024},
	month = {Jan-03-2024},
	pages = {110471},
	issn = {00063207},
	doi = {10.1016/j.biocon.2024.110471},
	url = {https://authors.elsevier.com/c/1icDh1R~eWZv6},
	author = {Lelong, Pierre and Besnard, Aur{\'e}lien and Girondot, Marc and Habold, Caroline and Priam, Fabienne and Giraudeau, Mathieu and Le Loc{\textquoteright}h, Guillaume and Le Loc{\textquoteright}h, Aur{\'e}lie and Fournier, Pascal and Fournier-Chambrillon, Christine and Bustamante, Paco and Dupont, Sophie M. and Vincze, Orsolya and Gros-Desormeaux, Jean-Rapha{\"e}l and Martin, Jordan and Bourgeois, Ouv{\'e}a and Lepori, Muriel and R{\'e}gis, Sidney and Lecerf, Nicolas and Lefebvre, Fabien and Aubert, Nathalie and Frouin, C{\'e}dric and Flora, Fr{\'e}d{\'e}ric and Pimentel, Esteban and Pimentel, Manon and Siegwalt, Flora and Jeantet, Lor{\`e}ne and Chambault, Philippine and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and Arthus, Mosiah and Louis-Jean, Laurent and Brador, Aude and Giannasi, Paul and Etienne, Denis and Lecerf, Natha{\"e}l and Chevallier, Pascale and Chevallier, Tao and Meslier, St{\'e}phane and Landreau, Anthony and Maceno, Myriane and Larcher, Eug{\`e}ne and Le Maho, Yvon and Chevallier, Damien}
}
@article {9552,
	title = {Dining on corals: stable isotope evidence for close trophic connection between gall crabs (Cryptochiridae) and their stony coral hosts},
	journal = {Symbiosis},
	year = {2024},
	month = {Jul-01-2025},
	issn = {0334-5114},
	doi = {10.1007/s13199-023-00968-y},
	author = {Bravo, Henrique and Charlotte R. Dromard and van der Meer, Marcel T. J. and Schleimer, Anna and van der Meij, Sancia E. T.}
}
@article {9646,
	title = {An integrative taxonomic revision of the freshwater atyid shrimps (Crustacea: Decapoda: Caridea) of Micronesia},
	journal = {Diversity},
	volume = {16},
	year = {2024},
	month = {03/2024},
	pages = {1-31},
	abstract = {Twelve species of atyid shrimps are reported from three Micronesian islands (Babeldaob, Pohnpei, and Guam) and studied using a combined morphological and molecular approach. Among them, three are new records for the area (Caridina appendiculata, Caridina lobocensis, and Caridina rubella), while three new species are here described: Atyoida chacei sp. nov., Caridina ponapensis sp. nov., and Caridina rintelenorum sp. nov. Descriptions for these new species, diagnoses for poorly known species, and taxonomic notes are provided herein and their biogeography is discussed.},
	keywords = {16S, amphidromy, Atyidae, DNA, island, morphology},
	doi = {10.3390/d16040200},
	url = {https://www.mdpi.com/1424-2818/16/4/200},
	author = {de Mazancourt, Valentin and Marquet, G{\'e}rard and Keith, Philippe}
}
@article {9525,
	title = {The metabolites of light: Untargeted metabolomic approaches bring new clues to understand light-driven acclimation of intertidal mudflat biofilm},
	journal = {Science of The Total Environment},
	volume = {912},
	year = {2024},
	month = {Jan-02-2024},
	pages = {168692},
	abstract = {The\&nbsp;microphytobenthos\&nbsp;(MPB), a\&nbsp;microbial community\&nbsp;of primary producers, play a key role in\&nbsp;coastal ecosystem\&nbsp;functioning, particularly in intertidal mudflats. These mudflats experience challenging variations of irradiance, forcing the micro-organisms to develop photoprotective mechanisms to survive and thrive in this dynamic environment. Two major adaptations to light are well described in literature: the excess of light\&nbsp;energy dissipation\&nbsp;through non-photochemical quenching (NPQ), and the vertical migration in the sediment. These mechanisms trigger considerable scientific interest, but the biological processes and metabolic mechanisms involved in light-driven vertical migration remain largely unknown. To our knowledge, this study investigates for the first time metabolomic responses of a migrational mudflat biofilm exposed for 30\&nbsp;min to a light gradient of photosynthetically active radiation (PAR) from 50 to 1000\&nbsp;μmol photons m-2\&nbsp;s-1. The untargeted metabolomic analysis allowed to identify metabolites involved in two types of responses to light irradiance levels. On the one hand, the production of SFAs and MUFAs, primarily derived from bacteria, indicates a healthy photosynthetic state of MPB under low light (LL; 50 and 100 PAR) and medium light (ML; 250 PAR) conditions. Conversely, when exposed to high light (HL; 500, 750 and 1000 PAR), the MPB experienced light-induced stress, triggering the production of alka(e)nes and fatty alcohols. The physiological and ecological roles of these compounds are poorly described in literature. This study sheds new light on the topic, as it suggests that these compounds may play a crucial and previously unexplored role in light-induced stress\&nbsp;acclimation\&nbsp;of migrational MPB biofilms. Since alka(e)nes are produced from FAs\&nbsp;decarboxylation, these results thus emphasize for the first time the importance of FAs pathways in microphytobenthic biofilms acclimation to light.},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2023.168692},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969723073205},
	author = {Caroline Doose and C{\'e}dric Hubas}
}
@article {9643,
	title = {Quantifying larval dispersal portfolio in seabass nurseries using otolith chemical signatures},
	journal = {Marine Environmental Research},
	volume = {196},
	year = {2024},
	month = {Jan-04-2024},
	pages = {106426},
	abstract = {The temporal asynchronies in larvae production from different spawning areas are fundamental components for ensuring stability and resilience of marine metapopulations. Such a concept, named portfolio effect, supposes that diversifying larval dispersal histories should minimize the risk of recruitment failure by increasing the probability that at least some larvae successfully settle in nursery. Here, we used a reconstructive approach based on otolith chemistry to quantify the larval dispersal portfolio of the European seabass,\&nbsp;Dicentrarchus labrax, across six estuarine nursery areas of the northeast Atlantic Ocean. The analysis of natal and trajectory signatures indicated that larvae hatch in distinct environments and then dispersed in water masses featured by contrasting chemical signatures. While some trace elements appeared affected by temporal changes (Mn and Sr), others varied spatially during the larval stage but remained poorly affected by temporal fluctuation and fish physiology (Ba, Cu, Rb and Zn). We then proposed two diversity metrics based on richness and variations of chemical signatures among populations to reflect spatio-temporal diversity in natal origins and larval trajectories (i.e., estimates of dispersal portfolio). Along the French coast, the diversity estimates were maximum in nurseries located at proximity of offshore spawning sites and featured by complex offshore hydrodynamic contexts, such as the Mont St-Michel bay. Finally, our findings indicate that the dispersal portfolio was positively related with the local abundance of seabass juveniles, supporting the assumption that heterogeneity in dispersal history contributes to promote recruitment success in nurseries.},
	keywords = {Connectivity, dispersion, Dynamic time warping, Fish nursery, Larval life history, Otolith chemistry},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2024.106426},
	url = {https://www.sciencedirect.com/science/article/pii/S0141113624000874},
	author = {Teichert, Nils and Tabouret, H{\'e}l{\`e}ne and Liz{\'e}, Anne and Daverat, Fran{\c c}oise and Acou, Anthony and Trancart, Thomas and Virag, Laure-Sarah and Pecheyran, Christophe and Feunteun, Eric and Carpentier, Alexandre}
}
@article {9557,
	title = {Structural and functional characterization of an egg-laying hormone signaling system in a lophotrochozoan {\textendash} The pacific oyster (Crassostrea gigas)},
	journal = {General and Comparative Endocrinology},
	volume = {346},
	year = {2024},
	month = {Jan-01-2024},
	pages = {114417},
	issn = {00166480},
	doi = {10.1016/j.ygcen.2023.114417},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016648023002228},
	author = {Favrel, P. and Dubos, M.P. and Bernay, B. and Pasquier, J. and Schwartz, J. and Lefranc, B. and Mouret, L. and Guillaume Rivi{\`e}re and Leprince, J. and Bondon, A.}
}
@article {9528,
	title = {Tracing the fate of seabird-derived nitrogen in a coral reef using nitrate and coral skeleton nitrogen isotopes},
	journal = {Limnology and Oceanography},
	year = {2024},
	month = {Mar-01-2024},
	issn = {0024-3590},
	doi = {10.1002/lno.12485},
	url = {https://aslopubs.onlinelibrary.wiley.com/doi/10.1002/lno.12485},
	author = {Choisnard, No{\'e}mie and Duprey, Nicolas Noel and Wald, Tanja and Thibault, Martin and Houlbr{\`e}que, Fanny and Foreman, Alan D. and Cuet, Pascale and Mireille M.M. Guillaume and Vonhof, Hubert and Sigman, Daniel M. and Haug, Gerald H. and Maguer, Jean-Fran{\c c}ois and L{\textquoteright}Helguen, St{\'e}phane and Mart{\'\i}nez-Garc{\'\i}a, Alfredo and Lorrain, Anne}
}
@article {9321,
	title = {Beach erosion aggravates the drastic decline in marine turtle populations in French Guiana},
	journal = {Regional Environmental Change},
	volume = {23},
	year = {2023},
	month = {Jan-09-2023},
	issn = {1436-3798},
	doi = {10.1007/s10113-023-02105-3},
	url = {https://link.springer.com/10.1007/s10113-023-02105-3},
	author = {Chevallier, Damien and Girondot, Marc and P{\'e}ron, Christina and Martin, Jordan and Bonola, Marc and Chevalier, Johan and de Thoisy, Beno{\^\i}t and Kelle, Laurent and Le Maho, Yvon and Gardel, Antoine and Anthony, Edward J.}
}
@article {9524,
	title = {A benchmark for computational analysis of animal behavior, using animal-borne tags},
	journal = {arXiv},
	year = {2023},
	month = {05/2023},
	abstract = {Animal-borne sensors ({\textquoteleft}bio-loggers{\textquoteright}) can record a suite of kinematic and environmental data, which can elucidate animal ecophysiology and improve conservation efforts. Machine learning techniques are useful for interpreting the large amounts of data recorded by bio-loggers, but there exists no standard for comparing the different machine learning techniques in this domain. To address this, we present the Bio-logger Ethogram Benchmark (BEBE), a collection of datasets with behavioral annotations, standardized modeling tasks, and evaluation metrics. BEBE is to date the largest, most taxonomically diverse, publicly available benchmark of this type, and includes 1654 hours of data collected from 149 individuals across nine taxa. We evaluate the performance of ten different machine learning methods on BEBE, and identify key challenges to be addressed in future work. Datasets, models, and evaluation code are made publicly available at https://github.com/earthspecies/ BEBE, to enable community use of BEBE as a point of comparison in methods development.},
	keywords = {Accelerometers, animal behavior, Bio-loggers, Clustering, Machine Learning, Time series},
	author = {Benjamin Hoffman and Maddie Cusimano and Vittorio Baglione and Daniela Canestrari and Chevallier, Damien and Dominic L. DeSantis and Lor{\`e}ne Jeantet and Monique A. Ladds and Takuya Maekawa and Vicente Mata-Silva and V{\'\i}ctor Moreno-Gonz{\'a}lez and Eva Trapote and Outi Vainio and Antti Vehkaoja and Ken Yoda and Katherine Zacarian and Ari Friedlaender and Christian Rutz}
}
@article {9308,
	title = {Benchmarking global biodiversity of decapod crustaceans (Crustacea: Decapoda)},
	journal = {Journal of Crustacean Biology},
	volume = {43},
	year = {2023},
	month = {Aug-01-2023},
	issn = {0278-0372},
	doi = {10.1093/jcbiol/ruad042},
	url = {https://academic.oup.com/jcb/article/doi/10.1093/jcbiol/ruad042/7234762},
	author = {De Grave, Sammy and Decock, Wim and Dekeyzer, Stefanie and Davie, Peter J F and Fransen, Charles H J M and Boyko, Christopher B and Poore, Gary C B and Macpherson, Enrique and Ahyong, Shane T and Crandall, Keith A and de Mazancourt, Valentin and Osawa, Masayuki and Chan, Tin-Yam and Ng, Peter K L and Lemaitre, Rafael and van der Meij, Sancia E T and Santos, Sandro}
}
@article {9238,
	title = {Coral reef fish communities of natural habitats and man-made coastal structures in Bora-Bora (French Polynesia)},
	journal = {Belgian Journal of Zoology},
	volume = {153},
	year = {2023},
	month = {May-01-2023},
	doi = {10.26496/bjz.2023.109},
	url = {https://www.belgianjournalofzoology.eu/BJZ/article/view/109},
	author = {Gairin, Emma and Minier, Lana and Claverie, Thomas and Charlotte R. Dromard and Maueau, Tehani and Collin, Antoine and Fr{\'e}d{\'e}rich, Bruno and Bertucci, Fr{\'e}d{\'e}ric and Lecchini, David}
}
@article {9192,
	title = {Data quality control considerations in multivariate environmental monitoring: experience of the French coastal network SOMLIT},
	journal = {Frontiers in Marine Science},
	volume = {10},
	year = {2023},
	month = {Feb-04-2025},
	doi = {doi.org/10.3389/fmars.2023.1135446},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2023.1135446/full},
	author = {Breton, Elsa and Savoye, Nicolas and Rimmelin-Maury, Peggy and Sautour, Benoit and Goberville, Eric and Lheureux, Arnaud and Cariou, Thierry and Ferreira, Sophie and Agogue, Helene and Alliouane, Samir and Aubert, Fabien and Aubin, S{\'e}bastien and Berthebaud, Eric and Blayac, Hadrien and Blondel, Lucie and Boulart, C{\'e}dric and Bozec, Yann and Bureau, Sarah and Caillo, Arnaud and Cauvin, Arnaud and Cazes, Jean-Baptiste and Chasselin, L{\'e}o and Pascal Claquin and Conan, Pascal and Cordier, Marie-Ange and Costes, Laurence and Crec{\textquoteright}hriou, Romain and Crispi, Olivier and Crouvoisier, Muriel and David, Val{\'e}rie and Del Amo, Yolanda and De Lary, Hortense and Delebecq, Gaspard and Devesa, J{\'e}r{\'e}my and Domeau, Aur{\'e}lien and Durozier, Maria and Emery, Claire and Eric Feunteun and Juliette Fauchot and Gentilhomme, Val{\'e}rie and Geslin, Sandrine and Giraud, M{\'e}lanie and Granger{\'e}, Karine and Gr{\'e}gori, Gerald and Grossteffan, Emilie and Gueux, Aurore and Guillaudeau, Julien and Guillou, Ga{\"e}l and Harrewyn, Manon and Jolly, Orianne and Jude-Lemeilleur, Florence and Labatut, Paul and Labourdette, Nathalie and Lachauss{\'e}e, Nicolas and Lafont, Michel and Lagadec, V{\'e}ronique and Lambert, Christophe and Lamoureux, Jezebel and Lanceleur, Laurent and Lebreton, Beno{\^\i}t and Lecuyer, Eric and Lemeille, David and Leredde, Yann and Leroux, C{\'e}dric and Leynaert, Aude and L{\textquoteright}Helguen, St{\'e}phane and Li{\'e}nart, Camilla and Mac{\'e}, Eric and Maria, Eric and Marie, Barbara and Marie, Dominique and Mas, S{\'e}bastien and Mendes, Fabrice and Mornet, Line and Mostajir, Behzad and Mousseau, Laure and Nowaczyk, Antoine and Nunige, Sandra and Parra, Ren{\'e} and Paulin, Thomas and Pecqueur, David and Petit, Franck and Pineau, Philippe and Raimbault, Patrick and Rigaut-Jalabert, Fabienne and Salmeron, Christophe and Salter, Ian and Sauriau, Pierre-Guy and Seuront, Laurent and Sultan, Emmanuelle and Vald{\`e}s, R{\'e}mi and Vantrepotte, Vincent and Vidussi, Francesca and Voron, Florian and Vuillemin, Renaud and Zudaire, Laurent. and Garcia, Nicole}
}
@article {9313,
	title = {Duplicated paralog of sulfide: quinone oxidoreductase contributes to the adaptation to hydrogen sulfide-rich environment in the hydrothermal vent crab, Xenograpsus testudinatus},
	journal = {Science of The Total Environment},
	volume = {890},
	year = {2023},
	month = {Jan-09-2023},
	pages = {164257},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2023.164257},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969723028784},
	author = {Chen, Chi and Wu, Guan-Chung and Chung, Yao-Tse and Li, Hau-Wen and Chou, Pei-Hsuan and Tseng, Yung-Che and Chen, Chieh-Jhen and Sylvie Dufour and Chang, Ching-Fong}
}
@article {9466,
	title = {An ecosystem-wide approach for assessing the spatialized cumulative effects of local and global changes on coastal ecosystem functioningAbstract},
	journal = {ICES Journal of Marine Science},
	volume = {80},
	year = {2023},
	month = {May-03-2025},
	pages = {1129 - 1142},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsad043},
	url = {https://academic.oup.com/icesjms/article/80/4/1129/7092991},
	author = {Nogues, Quentin and Bourdaud, Pierre and Araignous, Emma and Halouani, Ghassen and Ben~Rais~Lasram, Frida and Dauvin, Jean-Claude and Le~Loc{\textquoteright}h, Fran{\c c}ois and Nathalie Niquil},
	editor = {Coll, Marta}
}
@article {9459,
	title = {Euendolithic Infestation of Mussel Shells Indirectly Improves the Thermal Buffering Offered by Mussel Beds to Associated Molluscs, but One Size Does Not Fit All},
	journal = {Diversity},
	volume = {15},
	year = {2023},
	month = {2023},
	doi = {https://doi.org/10.3390/d15020239},
	author = {Dievart, Alexia M. and Christopher D. McQuaid and Zardi, Gerardo I. and Nicastro, Katy R. and Pierre William Froneman}
}
@article {9237,
	title = {Evidence of backcross inviability and mitochondrial DNA paternal leakage in sea turtle hybrids},
	journal = {Molecular Ecology},
	volume = {32},
	year = {2023},
	month = {Jan-02-2023},
	pages = {628 - 643},
	abstract = {Hybridization is known to be part of many species{\textquoteright} evolutionary history. Sea turtles have a fascinating hybridization system in which species separated by as much as 43\&nbsp;million years are still capable of hybridizing. Indeed, the largest nesting populations in Brazil of loggerheads (Caretta caretta) and hawksbills (Eretmochelys imbricata) have a high incidence of hybrids between these two species. A third species, olive ridleys (Lepidochelys olivacea), is also known to hybridize although at a smaller scale. Here, we used restriction site-associated DNA sequencing (RAD-Seq) markers, mitogenomes, and satellite-telemetry to investigate the patterns of hybridization and introgression in the Brazilian sea turtle population and their relationship with the migratory behaviours between feeding and nesting aggregations. We also explicitly test if the mixing of two divergent genomes in sea turtle hybrids causes mitochondrial paternal leakage. We developed a new species-specific PCR-assay capable of detecting mitochondrial DNA (mtDNA) inheritance from both parental species and performed ultra-deep sequencing to estimate the abundance of each mtDNA type. Our results show that all adult hybrids are first generation (F1) and most display a loggerhead migratory behaviour. We detected paternal leakage in F1 hybrids and different proportions of mitochondria from maternal and paternal species. Although previous studies showed no significant fitness decrease in hatchlings, our results support genetically-related hybrid breakdown possibly caused by cytonuclear incompatibility. Further research on hybrids from other populations in addition to Brazil and between different species will show if backcross inviability and mitochondrial paternal leakage is observed across sea turtle species.},
	keywords = {Brazil, ddRAD, hybridization, introgression, Marine turtles, mitogenomes},
	issn = {0962-1083},
	doi = {10.1111/mec.v32.310.1111/mec.16773},
	url = {https://onlinelibrary.wiley.com/toc/1365294x/32/3},
	author = {Vila{\c c}a, Sibelle T. and Maroso, Francesco and Lara, Paulo and de Thoisy, Beno{\^\i}t and Chevallier, Damien and Arantes, Larissa Souza and Santos, Fabricio R. and Bertorelle, Giorgio and Mazzoni, Camila J.}
}
@article {9361,
	title = {The goby fish Sicydium spp. as valuable sentinel species towards the chemical stress in freshwater bodies of West Indies},
	journal = {Aquatic Toxicology},
	volume = {261},
	year = {2023},
	month = {Jan-08-2023},
	pages = {106623},
	abstract = {Implementation of the European Water Framework Directive in tropical areas such as the French West Indies (FWI) requires to select relevant aquatic sentinel species for investigating the ecological status of surface waters. The present work aimed to study the biological response of the widespread fish Sicydium spp. towards river chemical quality in Guadeloupe island through a set of proper biomarkers. During a 2-year survey, the hepatic EROD activity, the micronucleus formation and the level of primary DNA strand breaks in erythrocytes were measured respectively as an enzymatic biomarker of exposure and genotoxicity endpoints in fish living upstream and downstream of two chemically-contrasted rivers. Hepatic EROD activity was shown to be variable along the time but always significantly higher in fish from the most contaminated river (Rivi{\`e}re aux Herbes) compared to the low contaminated one (Grande Rivi{\`e}re de Vieux-Habitants). Fish size did not influence EROD activity. Female fish exhibited a lower EROD activity compared to males depending on the catching period. We observed significant temporal variation in micronucleus frequency and primary DNA damage level measured in fish erythrocytes that did not depend on the fish size. Micronucleus frequency and to a lesser extent DNA damage were significantly higher in fish from the Rivi{\`e}re aux Herbes compared to the Grande Rivi{\`e}re de Vieux-Habitants. Our results argue for the interest of using Sicydium spp. as sentinel species to assess river quality and chemical pressures in FWI.},
	issn = {0166445X},
	doi = {10.1016/j.aquatox.2023.106623},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0166445X23002266},
	author = {Bony, S. and Labeille, M. and Lefrancois, E. and Noury, P. and Olivier, J.M. and Santos, R. and Teichert, Nils and Besnard, A. and Devaux, A.}
}
@article {9526,
	title = {Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis},
	journal = {Peer Community Journal},
	volume = {3},
	year = {2023},
	month = {Jan-01-2023},
	abstract = {Extracellular polymeric substances (EPS) refer to a wide variety of high molecular weight molecules secreted outside the cell membrane by biofilm microorganisms. In the present study, EPS from marine microphytobenthic biofilms were extracted and their isotope ratios were analysed. A comparison of these ratios with the carbon isotope ratios of fatty acid biomarkers allowed the identification of the main EPS producers of two contrasting types of intertidal marine sediments. Our study reveals that EPS sources are more diverse in sandy sediments than in muddy sediments. We also found distinct patterns in the production and breakdown of EPS in sandy and muddy environments. The main difference observed was in how epipelic and epipsammic diatoms affected the chemistry of EPS, which had significant implications for the growth of bacteria specialized in utilizing EPS. These differences were likely linked to variations in the functioning of epipelic and epipsammic communities, specifically in how EPS was used either for motility or for cell attachment.},
	doi = {10.24072/pcjournal.336},
	url = {https://peercommunityjournal.org/articles/10.24072/pcjournal.336/},
	author = {C{\'e}dric Hubas and Gaubert-Boussarie, Julie and D{\textquoteright}Hondt, An-Sofie and Bruno Jesus and Lamy, Dominique and Meleder, Vona and Prins, Antoine and Rosa, Philippe and Stock, Willem and Sabbe, Koen}
}
@article {9393,
	title = {Influence of nutrient enrichment on colonisation and photosynthetic parameters of hard substrate marine microphytobenthos},
	journal = {Biofouling},
	year = {2023},
	month = {Feb-10-2023},
	pages = {1 - 18},
	abstract = {This study aimed to assess the influence of nutrient enrichment on the development of microalgal biofilm on concrete and PVC cubes. Three mesocosms were utilized to create a nutrient gradient over a period of 28 days. Various parameters including biomass, photosynthetic activity, microtopography, and extracellular polymeric substances (EPS) were measured. Imaging PAM techniques were employed to obtain surface-wide data. Results revealed that nutrient availability had no significant impact on Chl a biomass and the maximum quantum efficiency of PSII (Fv/Fm). The photosynthetic capacity and efficiency were minimally affected by nutrient availability. Interestingly, the relationship between microphytobenthic (MPB) biomass and photosynthesis and surface rugosity exhibited distinct patterns. Negative reliefs showed a strong correlation with Fv/Fm, while no clear pattern emerged for biomass on rough concrete structures. Overall, our findings demonstrate that under conditions of heightened eutrophication, biofilm photosynthesis thrives in the fissures and crevasses of colonized structures regardless of nutrient levels. This investigation provides valuable insights into the interplay between nutrient availability and surface rugosity.},
	issn = {0892-7014},
	doi = {10.1080/08927014.2023.2261852},
	url = {https://www.tandfonline.com/doi/full/10.1080/08927014.2023.2261852},
	author = {Vivier, Baptiste and Faucheux-Bourlot, Caroline and Orvain, Francis and Chasselin, L{\'e}o and Jolly, Orianne and Navon, Maxime and Boutouil, Mohamed and Goux, Didier and Dauvin, Jean-Claude and Pascal Claquin}
}
@article {9523,
	title = {Key issues in assessing threats to sea turtles: knowledge gaps and future directions},
	journal = {Endangered Species Research},
	volume = {52},
	year = {2023},
	month = {Feb-12-2024},
	pages = {303 - 341},
	issn = {1863-5407},
	doi = {10.3354/esr01278},
	url = {https://www.int-res.com/abstracts/esr/v52/p303-341/},
	author = {Fuentes, MMPB and McMichael, E and Kot, CY and Silver-Gorges, I and Wallace, BP and Godley, BJ and Brooks, AML and Ceriani, SA and Cort{\'e}s-G{\'o}mez, AA and Dawson, TM and Dodge, KL and Flint, M and Jensen, MP and Komoroske, LM and Kophamel, S and Lettrich, MD and Long, CA and Nelms, SE and Patr{\'\i}cio, AR and Robinson, NJ and Seminoff, JA and Ware, M and Whitman, ER and Chevallier, Damien and Clyde-Brockway, CE and Korgaonkar, SA and Mancini, A and Mello-Fonseca, J and Monsinjon, JR and Neves-Ferreira, I and Ortega, AA and Patel, SH and Pfaller, JB and Ramirez, MD and Raposo, C and Smith, CE and Abreu-Grobois, FA and Hays, GC}
}
@article {9070,
	title = {Local Food Systems under Global Influence: The Case of Food, Health and Environment in Five Socio-Ecosystems},
	journal = {Sustainability},
	volume = {15},
	year = {2023},
	month = {Jan-02-2023},
	pages = {2376},
	doi = {10.3390/su15032376},
	url = {https://www.mdpi.com/2071-1050/15/3/2376},
	author = {Rapinski, Michael and Raymond, Richard and Davy, Damien and Herrmann, Thora and Bedell, Jean-Philippe and Ka, Abdou and Odonne, Guillaume and Chanteloup, Laine and Pascal Jean Lopez and Foulquier, Eric and da Silva, Eduardo Ferreira and El Deghel, Nathalie and Bo{\"e}tsch, Gilles and Coxam, V{\'e}ronique and Joliet, Fabienne and Guihard-Costa, Anne-Marie and Tib{\`e}re, Laurence and Nazare, Julie-Anne and Duboz, Priscilla}
}
@article {9277,
	title = {Major declines in NE Atlantic plankton contrast with more stable populations in the rapidly warming North Sea},
	journal = {Science of The Total Environment},
	year = {2023},
	month = {Jan-07-2023},
	pages = {165505},
	abstract = {Plankton form the base of marine food webs, making them important indicators of ecosystem status. Changes in the abundance of plankton functional groups, or lifeforms, can affect higher trophic levels and can indicate important shifts in ecosystem functioning. Here, we extend this knowledge by combining data from Continuous Plankton Recorder and fixed-point stations to provide the most comprehensive analysis of plankton time-series for the North-East Atlantic and North-West European shelf to date. We analysed 24 phytoplankton and zooplankton datasets from 15 research institutions to map 60-year abundance trends for 8 planktonic lifeforms. Most lifeforms decreased in abundance (e.g. dinoflagellates: -5 \%, holoplankton: -7 \% decade-1), except for meroplankton, which increased 12 \% decade-1, reflecting widespread changes in large-scale and localised processes. K-means clustering of assessment units according to abundance trends revealed largely opposing trend direction between shelf and oceanic regions for most lifeforms, with North Sea areas characterised by increasing coastal abundance, while abundance decreased in North-East Atlantic areas. Individual taxa comprising each phytoplankton lifeform exhibited similar abundance trends, whereas taxa grouped within zooplankton lifeforms were more variable. These regional contrasts are counterintuitive, since the North Sea which has undergone major warming, changes in nutrients, and past fisheries perturbation has changed far less, from phytoplankton to fish larvae, as compared to the more slowly warming North-East Atlantic with lower nutrient supply and fishing pressure. This more remote oceanic region has shown a major and worrying decline in the traditional food web. Although the causal mechanisms remain unclear, declining abundance of key planktonic lifeforms in the North-East Atlantic, including diatoms and copepods, are a cause of major concern for the future of food webs and should provide a red flag to politicians and policymakers about the prioritisation of future management and adaptation measures required to ensure future sustainable use of the marine ecosystem.},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2023.165505},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969723041281},
	author = {Holland, Matthew M. and Louchart, Arnaud and Artigas, Luis Felipe and Ostle, Clare and Atkinson, Angus and Rombouts, Isabelle and Graves, Carolyn A. and Devlin, Michelle and Heyden, Birgit and Machairopoulou, Margarita and Bresnan, Eileen and Schilder, Jos and Jakobsen, Hans H. and Llody-Hartley, Hannah and Tett, Paul and Best, Mike and Goberville, Eric and McQuatters-Gollop, Abigail}
}
@article {9108,
	title = {Marine invertebrates and noise},
	journal = {Frontiers in Marine Science},
	volume = {10},
	year = {2023},
	month = {March-07-2023},
	abstract = {Within the set of risk factors that compromise the conservation of marine biodiversity, one of the least understood concerns is the noise produced by human operations at sea and from land. Many aspects of how noise and other forms of energy may impact the natural balance of the oceans are still unstudied. Substantial attention has been devoted in the last decades to determine the sensitivity to noise of marine mammals{\textemdash}especially cetaceans and pinnipeds{\textemdash} and fish because they are known to possess hearing organs. Recent studies have revealed that a wide diversity of invertebrates are also sensitive to sounds, especially via sensory organs whose original function is to allow maintaining equilibrium in the water column and to sense gravity. Marine invertebrates not only represent the largest proportion of marine biomass and are indicators of ocean health but many species also have important socio-economic values. This review presents the current scientific knowledge on invertebrate bioacoustics (sound production, reception, sensitivity), as well as on how marine invertebrates are affected by anthropogenic noises. It also critically revisits the literature to identify gaps that will frame future research investigating the tolerance to noise of marine ecosystems.},
	keywords = {marine invertebrates, marine noise pollution, noise effects, particle motion, sound detection, sound pressure, sound production, statocyst},
	doi = {10.3389/fmars.2023.1129057},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2023.1129057/full},
	author = {Sol{\'e}, Marta and Kaifu, Kenzo and Mooney, T. Aran and Nedelec, Sophie L. and Olivier, Fr{\'e}d{\'e}ric and Radford, Andrew N. and Vazzana, Mirella and Wale, Matthew A. and Semmens, Jayson M. and Simpson, Stephen D. and Buscaino, Giuseppa and Hawkins, Anthony and Aguilar de Soto, Natacha and Akamatsu, Tomoari and Chauvaud, Laurent and Day, Ryan D. and Fitzgibbon, Quinn and McCauley, Robert D. and Andr{\'e}, Michel}
}
@article {9252,
	title = {Marine pollution between gyres: plastic debris in marine turtles and dolphins in French Guiana, Equatorial Atlantic},
	journal = {Latin American Journal of Aquatic Research},
	volume = {51},
	year = {2023},
	month = {06/2023},
	abstract = {Plastic pollution has not raised much attention until the 2000s, despite being manufactured for about a century. It is now considered one of the most substantial environmental issues. Here we investigate the presence of plastic contamination in 34 stranded animals on the coast of French Guiana, South America. Here we present information highlighting the magnitude of plastic contamination in marine coastal and pelagic tropical marine vertebrates on the Equatorial Atlantic coast of South America. All four species studied here are protected and emblematic vertebrates of the region, with a fragile conservation status, including the olive ridley turtle Lepidochelys olivacea, the green turtle Chelonia mydas and the leatherback turtle Dermochelys coriacea, and a small cetacean, the Guiana dolphin Sotalia guianensis. Macroplastics (polypropylene, polyethylene, terephthalate, and polystyrene) were detected in four juvenile green turtles. Microplastics (polypropylene, polyethylene, terephthalate, polystyrene, nylon, acrylates, polycarbonates) were found in 13 individuals (two dolphins, six olive ridleys, four green turtles, and the leatherback turtle). The sampled species have different diets, distribution patterns, and ages, suggesting widespread plastic pollution. The study area is located far from the oceanic gyres. However, they are influenced by the North Brazilian Current, the Amazon River, and other rivers of the Guianas.},
	keywords = {Chelonia, Dermochelys, Lepidochelys, macroplastics, microplastics, Sotalia},
	doi = {10.3856/vol51-issue3-fulltext-2923},
	url = {http://lajar.cl/index.php/rlajar/article/view/vol51-issue3-fulltext-2923/1706},
	author = {Flore Emmonot and Blandine Siegrist and Amandine Bordin and Virginie Dos Reis and Chevallier, Damien and Yannick Estevez and Benoit de Thoisy}
}
@article {9560,
	title = {Molecular and phenotypic effects of early exposure to an environmentally relevant pesticide mixture in the Pacific oyster, Crassostrea gigas.},
	journal = {Environmental Pollution},
	volume = {326},
	year = {2023},
	month = {Jan-06-2023},
	pages = {121472},
	issn = {02697491},
	doi = {10.1016/j.envpol.2023.121472},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0269749123004748},
	author = {Sol-Dourdin, Thomas and Guillaume Rivi{\`e}re and Cormier, Alexandre and Di Poi, Carole and Guyomard, Killian and Rabiller, Manuella and Akcha, Farida and Bah Sadialiou, Thierno and Le Monier, Pauline and Sussarellu, Rossana}
}
@article {9246,
	title = {Molecular ecology of the freshwater shrimp Caridina natalensis and comparative analysis with other amphidromous species (Decapoda, Teleostei, and Gastropoda)},
	journal = {Hydrobiologia},
	year = {2023},
	month = {Jun-26-2023},
	abstract = {Due to their life cycle shared between rivers and oceans, amphidromous organisms serve as intriguing models for studying biogeography. To investigate the implications of their unique life history, we examined the population structure of the amphidromous shrimp <em>Caridina natalensis</em> across its known range in the South Western Indian Ocean. A total of 118 specimens were collected from 7 islands (Mayotte, Moh{\'e}li, Mah{\'e}, Praslin, Silhouette, Mauritius and Madagascar) and the African mainland (South Africa), and their 16S rRNA and Cox1 mitochondrial genes were sequenced. Our findings reveal significant regional structure among archipelagos, suggesting complex patterns of dispersal involving successive events of extinction-recolonization. By conducting a comparative analysis with six other amphidromous species from the South Western Indian Ocean, based on literature sources, we were able to draw conclusions regarding the amphidromous biogeography of the area. Furthermore, we propose a novel classification of amphidromous species, considering their population structure and life history traits. We defined four categories of increasing dispersal abilities and decreasing genetic population structure: 1. Land-locked species; 2. Species with reduced or facultative amphidromy; 3. Species with common amphidromy; and 4. Super-amphidromous species. Lastly, we identified the Comoros Islands (namely Mayotte and Moh{\'e}li) as a critical area for the dispersal of amphidromous species, emphasizing the need for prioritizing conservation efforts in this region.},
	issn = {0018-8158},
	doi = {10.1007/s10750-023-05283-7},
	url = {https://link.springer.com/10.1007/s10750-023-05283-7},
	author = {de Mazancourt, Valentin and Ahmed Abdou and Castelin, Magalie and Ellien, C{\'e}line and Clara Lord and Marion Mennesson and Renneville, Cl{\'e}mentine and Marquet, G{\'e}rard and Philippe Keith}
}
@article {9222,
	title = {Nanopore long-reads reveal fine structure of prokaryotic communities in mangrove sediments, like Illumina short-reads but with twice more taxa},
	journal = {bioRxiv},
	volume = {10.1101/2023.06.06.541006},
	year = {2023},
	doi = {10.1101/2023.06.06.541006},
	author = {Alice Lemoinne and Guillaume Dirberg and Myriam Georges and Tony Robinet}
}
@article {9117,
	title = {New insights into the diversity of cryptobenthic Cirripectes blennies in the Mascarene Archipelago sampled using Autonomous Reef Monitoring Structures (ARMS)},
	journal = {Ecology and Evolution},
	volume = {13},
	year = {2023},
	month = {Jan-03-2023},
	issn = {2045-7758},
	doi = {10.1002/ece3.v13.310.1002/ece3.9850},
	url = {https://onlinelibrary.wiley.com/toc/20457758/13/3},
	author = {Marion Cou{\"e}del and Dettai, Agn{\`e}s and Mireille M.M. Guillaume and Bruggemann, Fleur and Bureau, Sophie and Baptiste Frattini and Verde~Ferreira, Am{\'e}lie and Azie, Jean-Lindsay and Bruggemann, J. Henrich}
}
@article {9215,
	title = {Sex-specific seasonal variations in the fatty acid and carotenoid composition of sea cucumber gonads and implications for aquaculture},
	journal = {Marine Biology},
	volume = {170},
	year = {2023},
	month = {Jan-04-2023},
	issn = {0025-3162},
	doi = {10.1007/s00227-023-04198-0},
	url = {https://link.springer.com/10.1007/s00227-023-04198-0},
	author = {Frank David and Herault, Gwen and Ameziane, Nadia and Tarik Meziane and Badou, Aicha and C{\'e}dric Hubas}
}
@article {9464,
	title = {Spatial and temporal variability of common cuttlefish, Sepia officinalis, L. spawning grounds off North Europe},
	journal = {Fisheries Research},
	volume = {263},
	year = {2023},
	month = {Jan-07-2023},
	pages = {106688},
	abstract = {Spatial and temporal dynamics of common cuttlefish,\&nbsp;Sepia officinalis, spawning at north European shores was studied using data collected by the Cephalopod Citizen Science Project, Seasearch between 1995 and 2021 and a range of other internet sources for the same period. Reproduction begins in the western English Channel in March and gradually progresses eastward following water warming, attaining the Netherlands in May, when peripheral spawning grounds expand north to Norfolk and the Irish Sea. Despite a thermal regime favourable for egg development existing around the UK and Ireland, spawning is normally restricted to the English Channel and southernmost North Sea with egg masses occasionally observed as far north as Isle of Man and Norfolk.},
	issn = {01657836},
	doi = {10.1016/j.fishres.2023.106688},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0165783623000814},
	author = {Laptikhovsky, Vladimir and Cooke, Gavan and Drerup, Christian and Jackson, Angus and MacLeod, Eleanor and Jean-Paul Robin}
}
@article {9553,
	title = {Spatio-temporal distribution of juvenile fish species in Guadeloupean reefs (Lesser Antilles)},
	journal = {Regional Studies in Marine Science},
	volume = {68},
	year = {2023},
	month = {Jan-12-2023},
	pages = {103236},
	issn = {23524855},
	doi = {10.1016/j.rsma.2023.103236},
	author = {Vignaud, L{\'e}a and Vall{\`e}s, Henri and Cordonnier, S{\'e}bastien and Chatagnon, Am{\'e}lia and Lecchini, David and Charlotte R. Dromard}
}
@article {9514,
	title = {Structural and functional characterization of an egg-laying hormone signaling system in a lophotrochozoan - The pacific oyster (Crassostrea gigas).},
	journal = {Gen Comp Endocrinol},
	volume = {346},
	year = {2023},
	month = {2023 Nov 28},
	pages = {114417},
	abstract = {<p>The egg-laying hormones (ELHs) of gastropod mollusks were characterized more than forty years ago. Yet, they have remained little explored in other mollusks. To gain insights into the functionality of the ELH signaling system in a bivalve mollusk - the oyster Crassostrea gigas, this study investigates the processing of its ELH precursor (Cragi-ELH) by mass spectrometry. Some of the ELH mature peptides identified in this study were subsequently investigated by nuclear magnetic resonance and shown to adopt an extended alpha-helix structure in a micellar medium mimicking the plasma membrane. To further characterize the ELH signaling system in C. gigas, a G protein-coupled receptor phylogenetically related to ecdysozoan diuretic hormone DH44 and corticotropin-releasing hormone (CRH) receptors named Cragi-ELHR was also characterized functionally and shown to be specifically activated by the two predicted mature ELH peptides and their N-terminal fragments. Both Cragi-ELH and Cragi-ELHR encoding genes were mostly expressed in the visceral ganglia (VG). Cragi-ELH expression was significantly increased in the VG of both fully mature male and female oysters at the spawning stage. When the oysters were submitted to a nutritional or hyposaline stress, no change in the expression of the ligand or receptor genes was recorded, except for Cragi-ELHR only during a mild acclimation episode to brackish water. These results suggest a role of Cragi-ELH signaling in the regulation of reproduction but not in mediating the stress response in our experimental conditions.</p>
},
	issn = {1095-6840},
	doi = {10.1016/j.ygcen.2023.114417},
	author = {Favrel, P and Dubos, M P and Bernay, B and Pasquier, J and Schwartz, J and Lefranc, B and Mouret, L and Rivi{\`e}re, G and Leprince, J and Bondon, A}
}
@article {9407,
	title = {Updated Checklist of the Freshwater Shrimps (Decapoda: Caridea: Atyidae) of Mindoro Island, the Philippines, with a Description of a New Species of Caridina},
	journal = {Arthropoda},
	volume = {1},
	year = {2023},
	month = {Jan-12-2023},
	pages = {374 - 397},
	doi = {10.3390/arthropoda1040015},
	url = {https://www.mdpi.com/2813-3323/1/4/15},
	author = {de Mazancourt, Valentin and Freitag, Hendrik and von Rintelen, Kristina and Manuel-Santos, Marivene and von Rintelen, Thomas}
}
@article {9465,
	title = {The usefulness of food web models in the ecosystem services framework: Quantifying, mapping, and linking services supply},
	journal = {Ecosystem Services},
	volume = {63},
	year = {2023},
	month = {Jan-10-2023},
	pages = {101550},
	issn = {22120416},
	doi = {10.1016/j.ecoser.2023.101550},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2212041623000438},
	author = {Nogues, Quentin and Baulaz, Yoann and Clavel, Joanne and Araignous, Emma and Bourdaud, Pierre and Ben Rais Lasram, Frida and Dauvin, Jean-Claude and Girardin, Valerie and Halouani, Ghassen and Le Loc{\textquoteright}h, Francois and Loew-Turbout, Fr{\'e}d{\'e}rique and Raoux, Aurore and Nathalie Niquil}
}
@article {9118,
	title = {What are the toxicity thresholds of chemical pollutants for tropical reef-building corals? A systematic review},
	journal = {Environmental Evidence},
	volume = {12},
	year = {2023},
	month = {Jan-12-2023},
	doi = {10.1186/s13750-023-00298-y},
	url = {https://environmentalevidencejournal.biomedcentral.com/articles/10.1186/s13750-023-00298-y},
	author = {Ou{\'e}draogo, Dakis-Yaoba and Mell, Hugo and Perceval, Olivier and Burga, Karen and Domart-Coulon, Isabelle and H{\'e}douin, Laetitia and Delaunay, Mathilde and Mireille M.M. Guillaume and Castelin, Magalie and Calvayrac, Christophe and Kerkhof, Odile and Sordello, Romain and Reyjol, Yorick and Ferrier-Pages, Christine}
}
@article {8885,
	title = {Analysing economic costs of invasive alien species with the invacost R package},
	journal = {Methods in Ecology and Evolution},
	volume = {13},
	year = {2022},
	month = {Jan-09-2022},
	pages = {1930 - 1937},
	issn = {2041-210X},
	doi = {10.1111/mee3.v13.910.1111/2041-210X.13929},
	url = {https://doi.org/10.1111/2041-210X.13929},
	author = {Leroy, Boris and Kramer, Andrew M. and Vaissi{\`e}re, Anne-Charlotte and Kourantidou, Melina and Courchamp, Franck and Diagne, Christophe}
}
@article {9006,
	title = {Anthropogenic Contaminants Shape the Fitness of the Endangered European Eel: A Machine Learning Approach},
	journal = {Fishes},
	volume = {7},
	year = {2022},
	month = {Jan-10-2022},
	pages = {274},
	abstract = {European eel is thought to be a symbol of the effects of global change on aquatic biodiversity. The species has persisted for millions of years and faced drastic environmental fluctuations thanks to its phenotypic plasticity. However, the species has recently declined to historically low levels under synergistic human pressures. Sublethal chemical contamination has been shown to alter reproductive capacity, but the impacts and required actions are not fully addressed by conservation plans. This paper proposes a modelling approach to quantify the effects of sublethal contamination by anthropogenic pollutants on the expression of life history traits and related fitness of the critically endangered European eel.\&nbsp;Material and Methods: We sampled female silver eels from eight different catchments across Europe previously shown to be representative of the spectrum of environmental variability and contamination. We measured 11 fitness-related life history traits within four main categories: fecundity, adaptability and plasticity, migratory readiness, and spawning potential. We used machine learning in models to explore the phenotypic reaction (expression of these life history traits) according to geographical parameters, parasite burdens (the introduced nematode\&nbsp;Anguillicoloides crassus) and anthropogenic contaminants (persistent organic pollutants (POPs) in muscular tissue and trace elements (TEs) in gonads, livers and muscles). Finally, we simulated, the effects of two management scenarios{\textemdash}contamination reduction and contamination increase{\textemdash}on the fecundity and recruitment.\&nbsp;Results: Contamination in our sampling was shown to have a stronger control on life history traits than do geographic and environmental factors that are currently described in the literature. We modelled different contamination scenarios to assess the benefit of mitigation: these scenarios suggest that reducing pollutants concentrations to the lowest values that occurred in our sampling design would double the fecundity of eels compared to the current situation.\&nbsp;Discussion: Remediation of contamination could represent a viable management option for increasing the resilience of eel populations, with much more effects than solely reducing fishing mortality. More broadly, our work provides an innovative way for quantitative assessment of the reaction norms of species{\textquoteright} biological traits and related fecundity to contamination by organic and inorganic pollutions thus opening new management and conservation pathways to revert the erosion of biodiversity.},
	doi = {10.3390/fishes7050274},
	url = {https://www.mdpi.com/2410-3888/7/5/274},
	author = {Bourillon, Bastien and Feunteun, Eric and Acou, Anthony and Trancart, Thomas and Teichert, Nils and Belpaire, Claude and Dufour, Sylvie and Bustamante, Paco and Aarestrup, Kim and Walker, Alan and Righton, David}
}
@article {9069,
	title = {Arsenic and chlordecone contamination and decontamination toxicokinetics in Sargassum sp.},
	journal = {Environmental Science and Pollution Research},
	volume = {29},
	year = {2022},
	month = {Jan-01-2022},
	pages = {6 - 16},
	issn = {0944-1344},
	doi = {10.1007/s11356-020-12127-7},
	url = {https://link.springer.com/10.1007/s11356-020-12127-7},
	author = {Devault, Damien A. and Massat, F{\'e}lix and Baylet, Alexandre and Dolique, Franck and Pascal Jean Lopez}
}
@article {8832,
	title = {Assessing the state of marine biodiversity in the Northeast Atlantic},
	journal = {Ecological Indicators},
	volume = {141},
	year = {2022},
	month = {Jan-08-2022},
	pages = {109148},
	issn = {1470160X},
	doi = {10.1016/j.ecolind.2022.109148},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1470160X22006203},
	author = {McQuatters-Gollop, A. and Gu{\'e}rin, L. and Arroyo, N.L. and Aubert, A. and Artigas, L.F. and Bedford, J. and Corcoran, E. and Dierschke, V. and Elliott, S.A.M. and Geelhoed, S.C.V. and Gilles, A. and Gonz{\'a}lez-Irusta, J.M. and Haelters, J. and Johansen, M. and Le Loc{\textquoteright}h, F. and Lynam, C.P. and Nathalie Niquil and Meakins, B. and Mitchell, I. and Padegimas, B. and Pesch, R. and Preciado, I. and Rombouts, I. and Safi, G. and Schmitt, P. and Sch{\"u}ckel, U. and Serrano, A. and Stebbing, P. and De la Torriente, A. and Vina-Herbon, C.}
}
@article {8759,
	title = {Bi-decadal changes in nutrient concentrations and ratios in marine coastal ecosystems: The case of the Arcachon bay, France},
	journal = {Progress in Oceanography},
	volume = {201},
	year = {2022},
	month = {Jan-02-2022},
	pages = {102740},
	issn = {00796611},
	doi = {10.1016/j.pocean.2022.102740},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0079661122000027},
	author = {Lheureux, A. and David, V. and Del Amo, Y. and Soudant, D. and Auby, I. and Ganthy, F. and Blanchet, H. and Cordier, M-A. and Costes, L. and Ferreira, S. and Mornet, L. and Nowaczyk, A. and Parra, M. and D{\textquoteright}Amico, F. and Gouriou, L. and Meteigner, C. and Oger-Jeanneret, H. and Rigouin, L. and Rumebe, M. and Tournaire, M-P. and Trut, F. and Trut, G. and Savoye, N.}
}
@article {8409,
	title = {Carbon dynamics driven by seawater recirculation and groundwater discharge along a forest-dune-beach continuum of a high-energy meso-macro-tidal sandy coast},
	journal = {Geochimica et Cosmochimica Acta},
	volume = {317},
	year = {2022},
	month = {Jan-01-2022},
	pages = {18 - 38},
	issn = {00167037},
	doi = {10.1016/j.gca.2021.10.021},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016703721006244},
	author = {Charbonnier, C{\'e}line and Anschutz, Pierre and Gwena{\"e}l Abril and Mucci, Alfonso and Deirmendjian, Loris and Poirier, Dominique and Bujan, St{\'e}phane and Lecroart, Pascal}
}
@article {8991,
	title = {Cephalopod palaeobiology: evolution and life history of the most intelligent invertebratesAbstract},
	journal = {Swiss Journal of Palaeontology},
	volume = {141},
	year = {2022},
	month = {Jan-12-2022},
	issn = {1664-2376},
	doi = {10.1186/s13358-022-00247-1},
	url = {https://sjpp.springeropen.com/articles/10.1186/s13358-022-00247-1},
	author = {Klug, Christian and Laure Bonnaud-Ponticelli and Nabhitabhata, Jaruwat and Fuchs, Dirk and De Baets, Kenneth and Cheng, Ji and Hoffmann, Ren{\'e}}
}
@article {8781,
	title = {Characterisation of long-term evolution (1950{\textendash}2016) and vulnerability of Mayotte{\textquoteright}s shoreline using aerial photographs and a multidisciplinary vulnerability index},
	journal = {Regional Studies in Marine Science},
	volume = {55},
	year = {2022},
	month = {Jan-09-2022},
	pages = {102537},
	issn = {23524855},
	doi = {10.1016/j.rsma.2022.102537},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2352485522001918},
	author = {Courteille, Marine and Jeanson, Matthieu and Collin, Antoine and James, Doroth{\'e}e and Claverie, Thomas and Charpentier, Michel and Gairin, Emma and Ren{\'e}-Trouillefou, Malika and Giraud-Renard, El{\'e}a and Franck Dolique and Lecchini, David}
}
@article {8534,
	title = {Chlordecone-contaminated epilithic biofilms show increased adsorption capacities},
	journal = {Science of The Total Environment},
	volume = {825},
	year = {2022},
	month = {Jan-06-2022},
	pages = {153942},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2022.153942},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969722010348},
	author = {C{\'e}dric Hubas and Monti, Dominique and Jean-Michel Mortillaro and Augagneur, Sylvie and Carbon, Anne and Duran, Robert and Karama, Solange and Tarik Meziane and Pardon, Patrick and Risser, Th{\'e}o and Tapie, Nathalie and Najet Thiney and Budzinski, H{\'e}l{\`e}ne and Lauga, B{\'e}atrice}
}
@article {8649,
	title = {Classification of underwater photogrammetry data for temperate benthic rocky reef mapping},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {270},
	year = {2022},
	month = {Jan-06-2022},
	pages = {107833},
	issn = {02727714},
	doi = {10.1016/j.ecss.2022.107833},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771422000920},
	author = {Ternon, Q. and Danet, V. and Thiriet, P. and Ysnel, F. and Eric Feunteun and Collin, A.}
}
@article {8121,
	title = {Climate change influences chlorophylls and bacteriochlorophylls metabolism in hypersaline microbial mat},
	journal = {Science of The Total Environment},
	volume = {802},
	year = {2022},
	month = {Jan-01-2022},
	pages = {149787},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2021.149787},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969721048622},
	author = {Mazi{\`e}re, C. and Bodo, M. and Perdrau, M.A. and Cravo-Laureau, C. and Duran, Robert and Christine Dupuy and C{\'e}dric Hubas}
}
@inbook {9390,
	title = {CO2 and CH4 emissions from coastal wetland soils},
	booktitle = {Carbon Mineralization in Coastal Wetlands},
	year = {2022},
	pages = {55{\textendash}91},
	publisher = {Elsevier},
	organization = {Elsevier},
	isbn = {978-0-12-819220-7},
	doi = {10.1016/B978-0-12-819220-7.00006-6},
	url = {https://linkinghub.elsevier.com/retrieve/pii/B9780128192207000066},
	author = {Marchand, Cyril and Frank David and Jacotot, Adrien and Leopold, Audrey and Ouyang, Xiaoguang}
}
@article {8735,
	title = {Colonisation of artificial structures by primary producers: competition and photosynthetic behaviour},
	journal = {Biofouling},
	year = {2022},
	month = {Apr-06-2023},
	pages = {1 - 14},
	issn = {0892-7014},
	doi = {10.1080/08927014.2022.2088285},
	url = {https://www.tandfonline.com/doi/full/10.1080/08927014.2022.2088285},
	author = {Vivier, Baptiste and Navon, Maxime and Dauvin, Jean-Claude and Chasselin, L{\'e}o and Deloor, Ma{\"e}l and Orvain, Francis and Rusig, Anne-Marie and Mussio, Isabelle and Boutouil, Mohamed and Pascal Claquin}
}
@article {8955,
	title = {Dynamic evolution of transient receptor potential vanilloid (TRPV) ion channel family with numerous gene duplications and losses},
	journal = {Frontiers in Endocrinology},
	volume = {13},
	year = {2022},
	month = {Jan-11-2022},
	doi = {10.3389/fendo.2022.1013868},
	url = {https://www.frontiersin.org/articles/10.3389/fendo.2022.1013868/full},
	author = {Morini, Marina and Bergqvist, Christina A. and Asturiano, Juan F. and Larhammar, Dan and Sylvie Dufour}
}
@book {9059,
	title = {European Spatial Data for Coastal and Marine Remote SensingLocal Circalittoral Rocky Seascape Structuring Fish Community: Insights from a Photogrammetric Approach},
	year = {2022},
	pages = {229 - 234},
	publisher = {Springer International Publishing},
	organization = {Springer International Publishing},
	address = {Cham},
	abstract = {Fish face multiple environmental pressures acting as multiscale filters structuring the community [6]. Study of the effect of local (~100 m2) habitat components such as habitat architecture, substrate composition, and benthic community on fish community is still limited because of the technical difficulties to sample reliable descriptors of all these habitat components. Nevertheless, the effect of the 3D architecture, especially the complexity, has been highlighted to act as an important variable, locally structuring fish communities and leading to an increase in diversity (species richness and Shannon index) and quantity (total density and biomass) of fish [1]. Photogrammetry is extending to submarine environment and allows to produce very fine information of the architecture and substrate composition [5], as well as of the benthic community [4]. The influence of the different habitat components (i.e., architecture, substrate composition, and benthic community) on the structure of fish community is here investigated, as well as the interest of photogrammetry in comparison to visual observation (Fig. 1).},
	keywords = {Architecture, Benthic community, Fish community, Photogrammetry, Seascape, Substrate composition},
	isbn = {978-3-031-16212-1},
	doi = {10.1007/978-3-031-16213-810.1007/978-3-031-16213-8_16},
	url = {https://link.springer.com/10.1007/978-3-031-16213-8},
	author = {Ternon, Quentin and Collin, Antoine and Feunteun, Eric and Ysnel, Fr{\'e}d{\'e}ric and Danet, Valentin and Guillaume, Manon and Thiriet, Pierre},
	editor = {Niculescu, Simona}
}
@article {8951,
	title = {Exceptional preservation of internal organs in a new fossil species of freshwater shrimp (Caridea: Palaemonoidea) from the Eocene of Messel (Germany)},
	journal = {Scientific Reports},
	volume = {12},
	year = {2022},
	month = {Oct-27-2022},
	pages = {1-12},
	abstract = {A new species of extinct freshwater shrimp was discovered in the Eocene deposit of the Messel Pit Konservat-Lagerst{\"a}tte. This rare find is represented by only a few specimens, one of which showing exceptionally preserved soft tissues and other internal parts like the stomach with possibly gastric ossicles in place, branchiae, the ovary, and the left mandible, never described in a fossil shrimp. The new species Bechleja brevirostris n. sp. is characterized by a short rostrum bearing 6{\textendash}8 dorsal spines and one ventral tooth, and long second pereiopods with strong chelae. One additional specimen shows a slightly different morphology and might belong to a different species. The systematic position of the species among the superfamily Palaemonoidea is discussed, as well as implications for the knowledge of the paleoenvironment of Lake Messel and the paleobiogeography of the Eocene.},
	isbn = {0123456789},
	issn = {2045-2322},
	doi = {10.1038/s41598-022-23125-9},
	url = {https://www.nature.com/articles/s41598-022-23125-9},
	author = {de Mazancourt, Valentin and Wappler, Torsten and Wedmann, Sonja}
}
@article {8713,
	title = {Fibropapillomatosis Prevalence and Distribution in Immature Green Turtles (Chelonia mydas) in Martinique Island (Lesser Antilles)},
	journal = {EcoHealth},
	year = {2022},
	month = {Mar-06-2022},
	issn = {1612-9202},
	doi = {10.1007/s10393-022-01601-y},
	url = {https://link.springer.com/10.1007/s10393-022-01601-y},
	author = {Roost, Thibaut and Schies, Jo-Ann and Girondot, Marc and Robin, Jean-Patrice and Lelong, Pierre and Martin, Jordan and Siegwalt, Flora and Jeantet, Lor{\`e}ne and Giraudeau, Mathieu and Le Loch, Guillaume and Bejarano, Manola and Bonola, Marc and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Andreani, Lucas and Jacaria, Fran{\c c}ois and Campistron, Guilhem and Lathi{\`e}re, Anthony and Martial, Fran{\c c}ois and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and R{\'e}gis, Sidney and Lecerf, Nicolas and Frouin, C{\'e}dric and Lefebvre, Fabien and Aubert, Nathalie and Flora, Fr{\'e}d{\'e}ric and Pimentel, Esteban and Lafolle, Rachelle and Thobor, Florence and Arthus, Mosiah and Etienne, Denis and Lecerf, Natha{\"e}l and All{\'e}nou, Jean-Pierre and Desigaux, Florian and Larcher, Eug{\`e}ne and Larcher, Christian and Curto, Alberto Lo and Befort, Joanne and Maceno-Panevel, Myriane and Lepori, Muriel and Chevallier, Pascale and Chevallier, Tao and Meslier, St{\'e}phane and Landreau, Anthony and Habold, Caroline and Le Maho, Yvon and Chevallier, Damien}
}
@article {8700,
	title = {First evidence of migration across the South Pacific in endangered Amsterdam albatross and conservation implications},
	journal = {Marine Policy},
	volume = {136},
	year = {2022},
	month = {Jan-02-2022},
	pages = {104921},
	issn = {0308597X},
	doi = {10.1016/j.marpol.2021.104921},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0308597X21005327},
	author = {Delord, K. and Poupart, Timoth{\'e}e and Nicolas Gasco and Weimerskirch, H. and Barbraud, Christophe}
}
@article {8714,
	title = {Food selection and habitat use patterns of immature green turtles (Chelonia mydas) on Caribbean seagrass beds dominated by the alien species Halophila stipulacea},
	journal = {Global Ecology and Conservation},
	volume = {37},
	year = {2022},
	month = {Jan-09-2022},
	pages = {e02169},
	issn = {23519894},
	doi = {10.1016/j.gecco.2022.e02169},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2351989422001718},
	author = {Siegwalt, Flora and Jeantet, Lor{\`e}ne and Lelong, Pierre and Martin, Jordan and Girondot, Marc and Bustamante, Paco and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Andreani, Lucas and Jacaria, Fran{\c c}ois and Campistron, Guilhem and Lathi{\`e}re, Anthony and Barotin, Charl{\`e}ne and Buret-Rochas, Ga{\"e}lle and Barre, Philippe and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and R{\'e}gis, Sidney and Lecerf, Nicolas and Frouin, C{\'e}dric and Lefebvre, Fabien and Aubert, Nathalie and Arthus, Mosiah and Etienne, Denis and All{\'e}nou, Jean-Pierre and Delnatte, C{\'e}sar and Lafolle, Rachelle and Thobor, Florence and Chevallier, Pascale and Chevallier, Tao and Lepori, Muriel and Assio, Cindy and Grand, Cl{\'e}ment and Bonola, Marc and Tursi, Yannick and Varkala, Pierre-Walter and Meslier, St{\'e}phane and Landreau, Anthony and Le Maho, Yvon and Habold, Caroline and Robin, Jean-Patrice and Chevallier, Damien}
}
@article {8853,
	title = {Host use of the elkorn coral crab Domecia acanthophora (Brachyura : Domeciidae), with a phylogeny of the genus},
	journal = {Cahier de Biologie Marine},
	volume = {63},
	year = {2022},
	month = {2022},
	pages = {239-246},
	author = {Sancia ET Van der Meij and Henrique Bravo and Yun JH Scholten and Charlotte R. Dromard}
}
@article {9178,
	title = {An integrative phylogenetic approach for inferring relationships of fossil gobioids},
	journal = {PLOS ONE},
	volume = {17},
	year = {2022},
	month = {Aug-07-2022},
	pages = {e0271121},
	doi = {10.1371/journal.pone.0271121},
	url = {https://dx.plos.org/10.1371/journal.pone.0271121},
	author = {Gierl, Christoph and Dohrmann, Martin and Philippe Keith and Humphreys, William and Esmaeili, Hamid R. and Vuki{\'c}, Jasna and {\v S}anda, Radek and Reichenbacher, Bettina},
	editor = {Mirande, Juan Marcos}
}
@article {9024,
	title = {Interannual variability of the initiation of the phytoplankton growing period in two French coastal ecosystems},
	journal = {Biogeosciences},
	volume = {19},
	year = {2022},
	pages = {5667{\textendash}5687},
	abstract = {Decadal time series of chlorophyll\&nbsp;a\&nbsp;concentrations sampled at high and low frequencies are explored to study climate-induced impacts on the processes inducing interannual variations in the initiation of the phytoplankton growing period (IPGP) in early spring. We specifically detail the IPGP in two contrasting coastal temperate ecosystems under the influence of rivers highly rich in nutrients: the Bay of Brest and the Bay of Vilaine. In both coastal ecosystems, we observed a large interannual variation in the IPGP influenced by sea temperature, river inputs, light availability (modulated by solar radiation and water turbidity), and turbulent mixing generated by tidal currents, wind stress, and river runoff. We show that the IPGP is delayed by around 30 d in 2019 in comparison with 2010. In situ observations and a one-dimensional vertical model coupling hydrodynamics, biogeochemistry, and sediment dynamics show that the IPGP generally does not depend on one specific environmental factor but on the interaction between several environmental factors. In these two bays, we demonstrate that the IPGP is mainly caused by sea surface temperature and available light conditions, mostly controlled by the turbidity of the system before first blooms. While both bays are hydrodynamically contrasted, the processes that modulate the IPGP are similar. In both bays, the IPGP can be delayed by cold spells and flood events at the end of winter, provided that these extreme events last several days.},
	doi = {10.5194/bg-19-5667-2022},
	url = {https://bg.copernicus.org/articles/19/5667/2022/},
	author = {Poppeschi, Coline and Charria, Guillaume and Daniel, Anne and Verney, Romaric and Rimmelin-Maury, Peggy and Retho, Micha{\"e}l and Goberville, Eric and Emilie Grossteffan and Plus, Martin}
}
@article {8146,
	title = {Knowledge gaps in economic costs of invasive alien fish worldwide},
	journal = {Science of The Total Environment},
	volume = {803},
	year = {2022},
	month = {Jan-01-2022},
	pages = {149875},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2021.149875},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969721049500},
	author = {Haubrock, Phillip J. and Bernery, Camille and Cuthbert, Ross N. and Liu, Chunlong and Kourantidou, Melina and Leroy, Boris and Turbelin, Anna J. and Kramer, Andrew M. and Verbrugge, Laura N.H. and Diagne, Christophe and Courchamp, Franck and Gozlan, Rodolphe E.}
}
@book {9055,
	title = {La vie en milieu extr{\^e}me},
	year = {2022},
	pages = {144},
	edition = {Editions Quae},
	author = {Juliette Ravaux and S{\'e}bastien Duperron}
}
@article {8888,
	title = {Long-Term Evolution of the Guadeloupean Shoreline (1950{\textendash}2017)},
	journal = {Journal of Coastal Research},
	volume = {38},
	year = {2022},
	month = {Jan-09-2022},
	doi = {10.2112/JCOASTRES-D-21-00161.1},
	url = {https://bioone.org/journals/journal-of-coastal-research/volume-38/issue-5/JCOASTRES-D-21-00161.1/Long-Term-Evolution-of-the-Guadeloupean-Shoreline-19502017/10.2112/JCOASTRES-D-21-00161.1.full},
	author = {Giraud-Renard, El{\'e}a and Franck Dolique and Collin, Antoine and James, Doroth{\'e}e and Gairin, Emma and Courteille, Marine and Beaufort, Oc{\'e}ane and Ren{\'e}-Trouillefou, Malika and Dulormne, Maguy and Jeanson, Matthieu and Lecchini, David}
}
@article {8884,
	title = {Managing biological invasions: the cost of inaction},
	journal = {Biological Invasions},
	volume = {24},
	year = {2022},
	month = {Jan-07-2022},
	pages = {1927 - 1946},
	issn = {1387-3547},
	doi = {10.1007/s10530-022-02755-0},
	url = {https://link.springer.com/10.1007/s10530-022-02755-0},
	author = {Ahmed, Danish A. and Hudgins, Emma J. and Cuthbert, Ross N. and Kourantidou, Melina and Diagne, Christophe and Haubrock, Phillip J. and Leung, Brian and Liu, Chunlong and Leroy, Boris and Petrovskii, Sergei and Beidas, Ayah and Courchamp, Franck}
}
@article {8923,
	title = {Mangrove microbiota along the urban-to-rural gradient of the Cayenne estuary (French Guiana, South America): Drivers and potential bioindicators},
	journal = {Science of The Total Environment},
	volume = {807},
	year = {2022},
	month = {Jan-02-2022},
	pages = {150667},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2021.150667},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969721057454},
	author = {Fiard, Maud and Cuny, Philippe and Sylvi, L{\'e}a and C{\'e}dric Hubas and J{\'e}z{\'e}quel, Ronan and Lamy, Dominique and Walcker, Romain and El Houssainy, Amonda and Heimb{\"u}rger-Boavida, Lars-Eric and Robinet, Tony and Bihannic, Isabelle and Gilbert, Franck and Michaud, Emma and Guillaume Dirberg and Militon, C{\'e}cile}
}
@article {8959,
	title = {Methods to detect spatial biases in tracking studies caused by differential representativeness of individuals, populations and time},
	journal = {Diversity and Distributions},
	year = {2022},
	month = {Mar-10-2024},
	issn = {1366-9516},
	doi = {10.1111/ddi.13642},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/ddi.13642},
	author = {Morera-Pujol, Virginia and Catry, Paulo and Magalh{\~a}es, Maria and Clara P{\'e}ron and Reyes-Gonz{\'a}lez, Jos{\'e} Manuel and Granadeiro, Jos{\'e} Pedro and Milit{\~a}o, Teresa and Dias, Maria P. and Oro, Daniel and Dell{\textquoteright}Omo, Giacomo and M{\"u}ller, Martina and Paiva, Vitor H. and Metzger, Benjamin and Neves, Ver{\'o}nica and Navarro, Joan and Karris, Georgios and Xirouchakis, Stavros and Cecere, Jacopo G. and Zamora-L{\'o}pez, Antonio and Forero, Manuela G. and Ouni, Ridha and Romdhane, Mohamed Salah and De Felipe, Fernanda and Zajkov{\'a}, Zuzana and Cruz-Flores, Marta and Gr{\'e}millet, David and Gonz{\'a}lez-Sol{\'\i}s, Jacob and Ramos, Ra{\"u}l}
}
@article {8752,
	title = {Modelling past migrations to determine efficient management rules favouring silver eel escapement from a large regulated Floodplain Lake},
	journal = {Journal for Nature Conservation},
	volume = {67},
	year = {2022},
	month = {Jan-06-2022},
	pages = {126192},
	abstract = {As human activities caused a dramatic decline of European eel population since the 1970\&nbsp;s, the European Union has set targets to ensure a 40\%\&nbsp;escapement\&nbsp;to the sea of the silver eel biomass by considerably reducing anthropogenic impact. Thus, human obstacles to fish migration like dams and hydropower plants should enable efficient management measures ensuring safe passage for eels during the migration. In order to provide a quick and efficient assessment of eel conservation measure applied to the\&nbsp;sluice gates\&nbsp;of a large\&nbsp;floodplain\&nbsp;lake, we implemented a novel evaluation method using predictions on past migration seasons when no management measure were applied. For this purpose, we collected acoustic\&nbsp;telemetry\&nbsp;monitoring data over three migration seasons and fitted a predictive model based on Boosted Regression Trees (BRTs) to describe the influence of environmental parameters on migration. The water level difference over two days proved to be decisive, along with early migration occasions in the season, as an increase of at least 10\&nbsp;cm water level was associated with a sharp increase of migration probability. We then used the BRT model to predict migration occasions at the dam over 8 past seasons and forecast the impact on escapement of management measures if they had been applied. Thanks to this original prospective assessment of dam management measures, we identified an enhanced opening decision rule, capable of increasing the eel escapement for each year of the study. The management measure is particularly efficient during the years with poor hydrological conditions (i.e. droughts), that is the periods with the lowest initial escapement rates. Finally, efficient management measures to increase silver eel escapement were based on increasing the number of\&nbsp;gate opening\&nbsp;days by only a few days per year (c.a. 15\%). However, the management measure only focused on silver eel migration, so that further investigations should consider the impacts of other threats occurring during the life cycle. This study also provides a highly operational approach for fast evaluation of conservation measures, avoiding lengthy and expensive monitoring campaigns of classical ex-post assessments.},
	keywords = {Eel conservation, fish migration, Predictive model, Reservoir management},
	issn = {16171381},
	doi = {10.1016/j.jnc.2022.126192},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1617138122000656},
	author = {Bourgeaux, Jacques and Teichert, Nils and Gillier, Jean-Marc and Danet, Valentin and Eric Feunteun and Acou, Anthony and Charrier, Fabien and Mazel, Virgile and Alexandre Carpentier and Trancart, Thomas}
}
@article {8599,
	title = {A multi-approach study to reveal eel life-history traits in an obstructed catchment before dam removal},
	journal = {Hydrobiologia},
	year = {2022},
	month = {Sep-03-2022},
	abstract = {River fragmentation is expected to impact not only movement patterns and distribution of eels within catchment, but also their life-history traits. Here, we used otolith multi-elemental signatures to reconstruct life sequences of European silver eels within an obstructed catchment, just before the removal of hydropower dams. Beyond providing an initial state, we hypothesized that otolith signatures can provide crucial information on the way eels use the watershed. Indeed, their spatial distribution is expected to shape life-history traits, including condition coefficient, trophic level, growth rate, or infection by metazoan parasites. While Sr:Ca and Ba:Ca ratios were complementary in tracing fish movements between freshwater and estuary, the Ba:Ca variations allowed to discriminate three freshwater sectors. The eels assigned to the midstream sector were more mobile and exhibited lower growth rates, probably in response to higher competition at the vicinity of dams. While most eels are currently produced by downstream and midstream sectors, eels assigned to upper reaches of connected tributaries generally display higher richness in native parasite and higher body condition and lipid reserve, known to promote the success of migration and reproduction. In the near future, the dam removals will represent an outstanding experimental framework for evaluating impacts of catchment reconnection.},
	keywords = {LA-ICP-MS, life-history trait, metazoan parasites, otolith microchemistry, phenotypic plasticity, river barrier},
	issn = {0018-8158},
	doi = {10.1007/s10750-022-04833-9},
	url = {https://link.springer.com/10.1007/s10750-022-04833-9},
	author = {Teichert, Nils and Liz{\'e}, Anne and Tabouret, H{\'e}l{\`e}ne and G{\'e}rard, Claudia and Bareille, Gilles and Acou, Anthony and Alexandre Carpentier and Trancart, Thomas and Virag, Laure-Sarah and Robin, Emma and Druet, Morgan and Prod{\textquoteright}Homme, Jordan and Eric Feunteun}
}
@article {9027,
	title = {Myctobase, a circumpolar database of mesopelagic fishes for new insights into deep pelagic prey fields},
	journal = {Scientific Data},
	volume = {9},
	year = {2022},
	month = {Jan-12-2022},
	doi = {10.1038/s41597-022-01496-y},
	url = {https://www.nature.com/articles/s41597-022-01496-y},
	author = {Woods, Briannyn and Trebilco, Rowan and Walters, Andrea and Hindell, Mark and Guy Duhamel and Flores, Hauke and Moteki, Masato and Patrice Pruvost and Reiss, Christian and Saunders, Ryan A. and Sutton, Caroline and Gan, Yi-Ming and Van de Putte, Anton}
}
@article {8797,
	title = {New Insights Into the Evolution of Corticotropin-Releasing Hormone Family With a Special Focus on Teleosts},
	journal = {Frontiers in Endocrinology},
	volume = {13},
	year = {2022},
	pages = {937218},
	doi = {Doi: 10.3389/fendo.2022.937218},
	author = {Maugars, Gersende and Mauvois, Xavier and Martin, Patrick and Rousseau, Karine and Aroua, Salima and Sylvie Dufour}
}
@article {8635,
	title = {Organic Phosphorus Scavenging Supports Efficient Growth of Diazotrophic Cyanobacteria Under Phosphate DepletionData_Sheet_1.docx},
	journal = {Frontiers in Microbiology},
	volume = {13},
	year = {2022},
	month = {Jan-03-2024},
	doi = {10.3389/fmicb.2022.84864710.3389/fmicb.2022.848647.s001},
	url = {https://www.frontiersin.org/articles/10.3389/fmicb.2022.848647/full},
	author = {Rabouille, Sophie and Tournier, Lauralie and Duhamel, Solange and Pascal Claquin and Crispi, Olivier and Talec, Am{\'e}lie and Landolfi, Angela and Oschlies, Andreas}
}
@article {9066,
	title = {Pairing AIS data and underwater topography to assess maritime traffic pressures on cetaceans: Case study in the Guadeloupean waters of the Agoa sanctuary},
	journal = {Marine Policy},
	volume = {143},
	year = {2022},
	month = {Jan-09-2022},
	pages = {105160},
	issn = {0308597X},
	doi = {10.1016/j.marpol.2022.105160},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0308597X2200207X},
	author = {Madon, B{\'e}n{\'e}dicte and Le Guyader, Damien and Jung, Jean-Luc and de Montgolfier, Benjamin and Pascal Jean Lopez and Foulquier, Eric and Bouveret, Laurent and Le Berre, Iwan}
}
@article {8681,
	title = {Phylogeography of the veined squid, Loligo forbesii, in European watersAbstract},
	journal = {Scientific Reports},
	volume = {12},
	year = {2022},
	month = {Jan-12-2022},
	doi = {10.1038/s41598-022-11530-z},
	url = {https://www.nature.com/articles/s41598-022-11530-z},
	author = {G{\"o}pel, Anika and Oesterwind, Daniel and Barrett, Christopher and Cannas, Rita and Caparro, Luis Silva and Carbonara, Pierluigi and Donnaloia, Marilena and Follesa, Maria Cristina and Larivain, Angela and Laptikhovsky, Vladimir and Lefkaditou, Evgenia and Jean-Paul Robin and Santos, Maria Bego{\~n}a and Sobrino, Ignacio and Valeiras, Julio and Valls, Maria and Vieira, Hugo C. and Wieland, Kai and Bastrop, Ralf}
}
@article {9005,
	title = {A possible strong impact of tidal power plant on silver eels{\textquoteright} migration},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {278},
	year = {2022},
	month = {Jan-11-2022},
	pages = {108116},
	abstract = {Very few\&nbsp;tidal power\&nbsp;plants exist in the world. The first one was built in the Rance\&nbsp;estuary\&nbsp;(Brittany, France) in 1966 and the second one in South Korea. However, with the increasing demand in renewable energy, other tidal power plant projects are being studied.<br>
<br>
These power plants are larger than unidirectional fluvial hydropower plants and strongly modify the natural\&nbsp;tidal cycle\&nbsp;in estuarine systems. As such, their effect on megafaunal movements might strongly differ from those caused by unidirectional fluvial hydropower plants and should be specifically considered and studied before the development of similar constructions.<br>
<br>
In this study, an acoustic\&nbsp;telemetry\&nbsp;array was deployed to track 25 silver eels released 16\&nbsp;km upstream of the Rance tidal power dam. Only 1/3 of the tagged eels passed the dam and reached the sea. Data suggested that eels interrupted their migration up to 5\&nbsp;km upstream of the dam. We assume that the noise and tidal disturbance generated by the dam could lead to a disruption of a high proportion of silver eels{\textquoteright} reproductive migration.},
	issn = {02727714},
	doi = {10.1016/j.ecss.2022.108116},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771422003742},
	author = {Trancart, Thomas and Teichert, Nils and Lamoureux, J{\'e}zabel and Gharnit, Elouana and Acou, Anthony and de Oliveira, Eric and Roy, Romain and Feunteun, Eric}
}
@article {8540,
	title = {A review of methods and indicators used to evaluate the ecological modifications generated by artificial structures on marine ecosystems},
	journal = {Journal of Environmental Management},
	volume = {310},
	year = {2022},
	month = {Jan-05-2022},
	pages = {114646},
	issn = {03014797},
	doi = {10.1016/j.jenvman.2022.114646},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0301479722002195},
	author = {Taormina, Bastien and Pascal Claquin and Vivier, Baptiste and Navon, Maxine and Pezy, Jean-Philippe and Raoux, Aurore and Dauvin, Jean-Claude}
}
@article {8883,
	title = {On the road: Anthropogenic factors drive the invasion risk of a wild solitary bee species},
	journal = {Science of The Total Environment},
	volume = {827},
	year = {2022},
	month = {Jan-06-2022},
	pages = {154246},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2022.154246},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969722013389},
	author = {Lanner, Julia and Dubos, Nicolas and Geslin, Beno{\^\i}t and Leroy, Boris and Hern{\'a}ndez-Castellano, Carlos and Dubai{\'c}, Jovana Bila and Bortolotti, Laura and Calafat, Joan Diaz and {\'C}etkovi{\'c}, Aleksandar and Flaminio, Simone and Le F{\'e}on, Violette and Margalef-Marrase, Jordi and Orr, Michael and Pachinger, B{\"a}rbel and Ruzzier, Enrico and Smagghe, Guy and Tuerlings, Tina and Vereecken, Nicolas J. and Meimberg, Harald}
}
@article {8854,
	title = {Seasonal, Diurnal, and Tidal Variations of Dissolved Inorganic Carbon and pCO2 in Surface Waters of a Temperate Coastal Lagoon (Arcachon, SW France)},
	journal = {Estuaries and Coasts},
	year = {2022},
	month = {Apr-09-2023},
	issn = {1559-2723},
	doi = {10.1007/s12237-022-01121-6},
	url = {https://link.springer.com/10.1007/s12237-022-01121-6},
	author = {Polsenaere, Pierre and Delille, Bruno and Poirier, Dominique and Charbonnier, C{\'e}line and Deborde, Jonathan and Mouret, Aur{\'e}lia and Gwena{\"e}l Abril}
}
@article {8696,
	title = {Seasonal dynamics of marine protist communities in tidally mixed coastal waters},
	journal = {Molecular Ecology},
	year = {2022},
	month = {Aug-05-2023},
	abstract = {Major seasonal community reorganizations and associated biomass variations are landmarks of plankton ecology. However, the processes of plankton community turnover rates have not been fully elucidated so far. Here, we analyse patterns of planktonic protist community succession in temperate latitudes, based on quantitative taxonomic data from both microscopy counts (cells \&gt; 10 μm) and ribosomal DNA metabarcoding (size fraction \&gt; 3 μm, 18S rRNA gene) from plankton samples collected biweekly over 8 years (2009-2016) at the SOMLIT-Astan station (Roscoff, Western English Channel). Based on morphology, diatoms were clearly the dominating group all year round and over the study period. Metabarcoding uncovered a wider diversity spectrum and revealed the prevalence of Dinophyceae and diatoms but also of Cryptophyta, Chlorophyta, Cercozoa, Syndiniales and Ciliophora in terms of read counts and or richness. The use of morphological and molecular analyses in combination allowed improving the taxonomic resolution and to identify the sequence of the dominant species and OTUs (18S V4 rDNA-derived taxa) that drive annual plankton successions. We detected that some of these dominant OTUs were benthic as a result of the intense tidal mixing typical of the French coasts in the English Channel. Our analysis of the temporal structure of community changes point to a strong seasonality and resilience. The temporal structure of environmental variables (especially Photosynthetic Active Radiation, temperature and macronutrients) and temporal structures generated by species life cycles and or species interactions, are key drivers of the observed cyclic annual plankton turnover.},
	issn = {0962-1083},
	doi = {10.1111/mec.16539},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/mec.16539},
	author = {Caracciolo, Mariarita and Rigaut-Jalabert, Fabienne and Romac, Sarah and Mah{\'e}, Fr{\'e}d{\'e}ric and Forsans, Samuel and Gac, Jean-Philippe and Arsenieff, Laure and Manno, Maxime and Chaffron, Samuel and Cariou, Thierry and Hoebeke, Mark and Bozec, Yann and Goberville, Eric and Le Gall, Florence and Guilloux, Lo{\"\i}c and Baudoux, Anne-Claire and de Vargas, Colomban and Not, Fabrice and Thi{\'e}baut, Eric and Henry, Nicolas and Simon, Nathalie}
}
@article {8833,
	title = {Spatialized ecological network analysis for ecosystem-based management: effects of climate change, marine renewable energy, and fishing on ecosystem functioning in the Bay of SeineAbstract},
	journal = {ICES Journal of Marine Science},
	volume = {79},
	year = {2022},
	month = {Dec-02-2023},
	pages = {1098 - 1112},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsac026},
	url = {https://academic.oup.com/icesjms/article/79/4/1098/6535870},
	author = {Nogues, Quentin and Araignous, Emma and Bourdaud, Pierre and Halouani, Ghassen and Raoux, Aurore and Foucher, Eric and Loc{\textquoteright}h, Fran{\c c}ois Le and Loew-Turbout, Fr{\'e}d{\'e}rique and Ben~Rais~Lasram, Frida and Dauvin, Jean-Claude and Nathalie Niquil}
}
@article {9037,
	title = {Spatio-temporal patterns in stable isotope composition of a benthic intertidal food web reveal limited influence from salt marsh vegetation and green tide},
	journal = {Marine Environmental Research},
	volume = {175},
	year = {2022},
	month = {Jan-03-2022},
	pages = {105572},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2022.105572},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0141113622000174},
	author = {Sturbois, A. and Riera, P. and Desroy, N. and Br{\'e}bant, T. and Alexandre Carpentier and Ponsero, A. and Schaal, G.}
}
@article {9038,
	title = {Stable Isotope Trajectory Analysis ( SITA ): A new approach to quantify and visualize dynamics in stable isotope studies},
	journal = {Ecological Monographs},
	volume = {92},
	year = {2022},
	month = {Jan-05-2022},
	issn = {0012-9615},
	doi = {10.1002/ecm.v92.210.1002/ecm.1501},
	url = {https://onlinelibrary.wiley.com/toc/15577015/92/2},
	author = {Sturbois, Anthony and Cucherousset, Julien and De C{\'a}ceres, Miquel and Desroy, Nicolas and Riera, Pascal and Alexandre Carpentier and Quillien, Nolwenn and Grall, Jacques and Espinasse, Boris and Cherel, Yves and Schaal, Gauthier}
}
@article {9035,
	title = {Stomach content and stable isotope analyses provide complementary insights into the trophic ecology of coastal temperate bentho-demersal assemblages under environmental and anthropogenic pressures},
	journal = {Marine Environmental Research},
	volume = {182},
	year = {2022},
	month = {Jan-12-2022},
	pages = {105770},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2022.105770},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S014111362200215X},
	author = {Sturbois, A. and Cozic, A. and Schaal, G. and Desroy, N. and Riera, P. and Le Pape, O. and Le Mao, P. and Ponsero, A. and Alexandre Carpentier}
}
@article {9312,
	title = {Tachykinins, new players in the control of reproduction and food intake: A comparative review in mammals and teleosts},
	journal = {Frontiers in Endocrinology},
	volume = {13},
	year = {2022},
	month = {Apr-12-2023},
	doi = {10.3389/fendo.2022.1056939},
	url = {https://www.frontiersin.org/articles/10.3389/fendo.2022.1056939/full},
	author = {Campo, Aurora and Sylvie Dufour and Rousseau, Karine}
}
@article {8769,
	title = {Temporal variations in the level of chlordecone in seawater and marine organisms in Martinique Island (Lesser Antilles)},
	journal = {Environmental Science and Pollution Research},
	year = {2022},
	month = {Oct-06-2023},
	abstract = {The present study, conducted in the Galion Bay in Martinique, aims to highlight the temporal and seasonal variations of chlordecone contamination (an organochlorine pollutant) in the ambient environment (seawater) but also in the marine organisms in three main coastal marine habitats (mangroves, seagrass beds and coral reefs). To this end, two methodologies were used to measure and compare the chemical contamination of seawater during 13 months (spot samplings and POCIS technique). In parallel, concentrations of chlordecone and isotopic ratios (C and N) were carried out on marine organisms, collected during two contrasting climatic periods (dry and rainy), to evidence seasonal variations. The results showed that the contamination of seawater displayed significant variations over time and depended on environmental factors such as water flows, which imply dilution and dispersion phenomena. Concerning the marine organisms, the level of contamination varied considerably between the two seasons in seagrass beds with higher levels of contamination during the rainy season. Reef organisms were more moderately affected by this pollution, while mangrove organisms showed a high level of chlordecone whatever the season. Finally, isotope analyses highlighted that bioamplification along marine food-webs occurs at each season and each station.},
	keywords = {coral reef, Mangrove, organochlorine pollution, passive samplers, seagrass, Stable isotopes},
	issn = {0944-1344},
	doi = {10.1007/s11356-022-21528-9},
	url = {https://link.springer.com/10.1007/s11356-022-21528-9},
	author = {Charlotte R. Dromard and All{\'e}nou, Jean-Pierre and Tapie, Nathalie and Budzinski, H{\'e}l{\`e}ne and Cimmaterra, Nicolas and De Rock, Pauline and Arkam, Salim and Cordonnier, S{\'e}bastien and Gonzalez, Jean-Louis and Bouchon-Navaro, Yolande and Bouchon, Claude and Thouard, Emmanuel}
}
@article {8465,
	title = {Transient Receptor Potential-Vanilloid (TRPV1-TRPV4) Channels in the Atlantic Salmon, Salmo salar. A Focus on the Pineal Gland and Melatonin Production},
	journal = {Frontiers in Physiology},
	volume = {22},
	year = {2022},
	month = {01/2022},
	pages = {15},
	type = {original research},
	abstract = {Fish are ectotherm, which rely on the external temperature to regulate their internal body temperature, although some may perform partial endothermy. Together with photoperiod, temperature oscillations, contribute to synchronizing the daily and seasonal variations of fish metabolism, physiology and behavior. Recent studies are shedding light on the mechanisms of temperature sensing and behavioral thermoregulation in fish. In particular, the role of some members of the transient receptor potential channels (TRP) is being gradually unraveled. The present study in the migratory Atlantic salmon, Salmo salar, aims at identifying the tissue distribution and abundance in mRNA corresponding to the TRP of the vanilloid subfamilies, TRPV1 and TRPV4, and at characterizing their putative role in the control of the temperature-dependent modulation of melatonin production{\textemdash}the time-keeping hormone{\textemdash}by the pineal gland. In Salmo salar, TRPV1 and TRPV4 mRNA tissue distribution appeared ubiquitous; mRNA abundance varied as a function of the month investigated. In situ hybridization and immunohistochemistry indicated specific labeling located in the photoreceptor cells of the pineal gland and the retina. Additionally, TRPV analogs modulated the production of melatonin by isolated pineal glands in culture. The TRPV1 agonist induced an inhibitory response at high concentrations, while evoking a bell-shaped response (stimulatory at low, and inhibitory at high, concentrations) when added with an antagonist. The TRPV4 agonist was stimulatory at the highest concentration used. Altogether, the present results agree with the known widespread distribution and role of TRPV1 and TRPV4 channels, and with published data on trout (Oncorhynchus mykiss), leading to suggest these channels mediate the effects of temperature on S. salar pineal melatonin production. We discuss their involvement in controlling the timing of daily and seasonal events in this migratory species, in the context of an increasing warming of water temperatures.},
	keywords = {Atlantic salmon, melatonin, pineal organ, Temperature, transient receptor potential vanilloid (TRPV), TRPV1, TRPV4},
	doi = {10.3389/fphys.2021.784416},
	url = {https://www.frontiersin.org/articles/10.3389/fphys.2021.784416/full?\&utm_source=Email_to_authors_\&utm_medium=Email\&utm_content=T1_11.5e1_author\&utm_campaign=Email_publication\&field=\&journalName=Frontiers_in_Physiology\&id=784416},
	author = {Nisembaum, Laura Gabriela and Loentgen, Guillaume and L{\textquoteright}Honor{\'e}, Thibault and Martin, Patrick and Paulin, Charles-Hubert and Fuent{\`e}s, Michael and Escoubeyrou, Karine and Delgado, Maria Jesus and Besseau, Laurence and Falc{\'o}n, Jack}
}
@article {8954,
	title = {West Side Story: A molecular and morphological study of Caridina longicarpus Roux, 1926 (Decapoda, Caridea, Atyidae) from New Caledonia reveals a new species},
	journal = {Zoosystema},
	volume = {44},
	year = {2022},
	pages = {463-474},
	abstract = {Numerous specimens of freshwater shrimps identified as Caridina longicarpus Roux, 1926 were recently collected from New Caledonia. Following an integrative taxonomy approach, they were morphologi- cally and genetically studied. Results of a 16S mtDNA analysis showed that the specimens initially identified as C. longicarpus were distributed in two geographically structured clades. Morphological study showed that the shrimps found in rivers draining to the east coast of the island belonged to C. longicarpus sensu stricto, whereas those from rivers draining to the west coast belonged to a new species, here described as Caridina occidentalis n. sp. Detailed redescription of C. longicarpus is pro- vided and a lectotype is designated. The existence of both species in allopatry could be explained by local biogeographical factors such as the topography of the island or oceanic circulation impacting the dispersal of larvae during the planktonic stage.},
	isbn = {0000753777},
	doi = {10.5252/zoosystema2022v44a18},
	url = {https://bioone.org/journals/zoosystema/volume-44/issue-18/zoosystema2022v44a18/West-Side-Story--A-molecular-and-morphological-study-of/10.5252/zoosystema2022v44a18.full},
	author = {de Mazancourt, Valentin and Br{\'e}thiot, Julien and Marquet, G{\'e}rard and Keith, Philippe}
}
@article {9179,
	title = {West Side Story: A molecular and morphological study of Caridina longicarpus Roux, 1926 (Decapoda, Caridea, Atyidae) from New Caledonia reveals a new species},
	journal = {Zoosystema},
	volume = {44},
	year = {2022},
	month = {Jan-10-2022},
	doi = {10.5252/zoosystema2022v44a18},
	url = {https://bioone.org/journals/zoosystema/volume-44/issue-18/zoosystema2022v44a18/West-Side-Story--A-molecular-and-morphological-study-of/10.5252/zoosystema2022v44a18.full},
	author = {Mazancourt, Valentin de and Br{\'e}thiot, Julien and Marquet, G{\'e}rard and Philippe Keith}
}
@article {8426,
	title = {Anthropogenic pressures coincide with Neotropical biodiversity hotspots in a flagship butterfly group},
	journal = {Diversity and Distributions},
	year = {2021},
	month = {12/2021},
	issn = {1366-9516},
	doi = {10.1111/ddi.13455},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/ddi.13455},
	author = {Dor{\'e}, Ma{\"e}l and Willmott, Keith and Leroy, Boris and Chazot, Nicolas and Mallet, James and Freitas, Andr{\'e} V. L. and Hall, Jason P. W. and Lamas, Gerardo and Dasmahapatra, Kanchon K. and Fontaine, Colin and Elias, Marianne}
}
@article {8099,
	title = {Aquatic biota responses to temperature in a high Andean geothermal stream},
	journal = {Freshwater Biology},
	year = {2021},
	month = {Nov-07-2022},
	abstract = {The impact of global warming on mountain ecosystems is predicted to be high, and particularly in the tropical region. Geothermal streams have provided comprehensive evidence about how aquatic biodiversity changes across natural thermal gradients, but current knowledge is restricted to arctic and temperate zones. Thermal tolerances are different in tropical biological communities, resulting in high thermal sensitivity and low capacity to endure change in their thermal environments. This feature can change the response of aquatic organisms to warming, yet there is little empirical evidence to support this assumption.<br>
In this study, we address this issue by evaluating how water temperature affects biodiversity, and the structure of primary and secondary producers of a high-elevation geothermal stream system (4,500\&nbsp;m above sea level) in the Bolivian Andes. We analysed multi-taxa responses to increased water temperature using benthic macroinvertebrate families, benthic algae and cyanobacteria, fishes, and macrophytes as study organisms. Different models were run to assess the response of aquatic biota to temperature. In addition, threshold indicator taxa analysis (TITAN) was used to identify changes in macroinvertebrate taxa distributions along the thermal gradient.<br>
We found that macroinvertebrate richness decreased at 24{\textendash}25{\textdegree}C due to the different taxon-specific responses to temperature. Threshold indicator taxa analysis identified 17 temperature thresholds for each family of macroinvertebrates. Changes in macroinvertebrate community composition were significantly associated with changes in water temperature. Similarly, changes in macrophytes were associated with temperature differences, and high macrophyte richness was found at 19{\textendash}20{\textdegree}C. Chlorophyll-a\&nbsp;concentration of green algae and diatoms was higher at intermediate temperatures 20{\textendash}22{\textdegree}C, macroinvertebrates density peaked at 27{\textdegree}C, and fish body size reduced linearly with temperature.<br>
Temperature increase in the geothermal stream resulted in a reduction of aquatic diversity and primary and secondary producers by simplifying the community structure to a few warm-adapted taxa and reduced body size. These patterns differed from those obtained in temperate/arctic geothermal streams, but are similar to other studies at high-elevation. In a context of increasing warming, the ecological structure of high-elevation streams might lose cold-adapted taxa, and change to smaller populations. Additional studies based on ecosystem functioning of geothermal streams could lead to a better understanding on how warming affects high-elevation streams.},
	issn = {0046-5070},
	doi = {10.1111/fwb.13798},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/fwb.13798},
	author = {Quenta-Herrera, Estefania and Daza, Antonio and Lazzaro, Xavier and Jacobsen, Dean and Dangles, Olivier and Cauvy-Frauni{\'e}, Sophie}
}
@article {8707,
	title = {Are we ready to track climate-driven shifts in marine species across international boundaries? - A global survey of scientific bottom trawl data},
	journal = {Global Change Biology},
	volume = {27},
	year = {2021},
	month = {Jan-01-2021},
	pages = {220 - 236},
	issn = {1354-1013},
	doi = {10.1111/gcb.v27.210.1111/gcb.15404},
	url = {https://onlinelibrary.wiley.com/toc/13652486/27/2},
	author = {Maureaud, Aurore and Frelat, Romain and P{\'e}cuchet, Laur{\`e}ne and Shackell, Nancy and M{\'e}rigot, Bastien and Pinsky, Malin L. and Amador, Kofi and Anderson, Sean C. and Arkhipkin, Alexander and Auber, Arnaud and Barri, I{\c c}a and Bell, Richard J. and Belmaker, Jonathan and Beukhof, Esther and Camara, Mohamed L. and Guevara-Carrasco, Renato and Choi, Junghwa and Christensen, Helle T. and Conner, Jason and Cubillos, Luis A. and Diadhiou, Hamet D. and Edelist, Dori and Emblemsv{\r a}g, Margrete and Ernst, Billy and Fairweather, Tracey P. and Fock, Heino O. and Friedland, Kevin D. and Garcia, Camilo B. and Gascuel, Didier and Gislason, Henrik and Goren, Menachem and Guitton, J{\'e}r{\^o}me and Jouffre, Didier and Hattab, Tarek and Hidalgo, Manuel and Kathena, Johannes N. and Knuckey, Ian and Kid{\'e}, Sa{\"\i}kou O. and Koen-Alonso, Mariano and Koopman, Matt and Kulik, Vladimir and Le{\'o}n, Jacqueline Palacios and Levitt-Barmats, Ya{\textquoteright}arit and Lindegren, Martin and Llope, Marcos and Massiot-Granier, F{\'e}lix and Masski, Hicham and McLean, Matthew and Meissa, Beyah and M{\'e}rillet, Laur{\`e}ne and Mihneva, Vesselina and Nunoo, Francis K. E. and O{\textquoteright}Driscoll, Richard and O{\textquoteright}Leary, Cecilia A. and Petrova, Elitsa and Ramos, Jorge E. and Refes, Wahid and Rom{\'a}n-Marcote, Esther and Siegstad, Helle and Sobrino, Ignacio and S{\'o}lmundsson, J{\'o}n and Sonin, Oren and Spies, Ingrid and Steingrund, Petur and Stephenson, Fabrice and Stern, Nir and Tserkova, Feriha and Tserpes, Georges and Tzanatos, Evangelos and Rijn, Itai and Zwieten, Paul A. M. and Vasilakopoulos, Paraskevas and Yepsen, Daniela V. and Ziegler, Philippe and Thorson, James}
}
@article {7580,
	title = {Bi-decadal variability in physico-biogeochemical characteristics of temperate coastal ecosystems: from large-scale to local drivers},
	journal = {Marine Ecology Progress Series},
	volume = {660},
	year = {2021},
	month = {Feb-18-2021},
	pages = {19-35},
	abstract = {Coastal marine ecosystems, which play a crucial role in the biogeochemical and ecological functioning of the earth system, are highly sensitive to the combined effects of climate and human activities. Because of their location, coastal ecosystems are directly influenced by human activities. Thus, it remains challenging to assess the spatial and temporal scales at which climate influences coastal ecosystems. Twelve sampling stations distributed in eight ecosystems of Western Europe were monitored during two decades for physico-biogeochemical parameters (temperature, salinity, concentrations of dissolved oxygen, nutrients and particulate material). The study encompasses a large diversity of temperate coastal ecosystems regarding geomorphology, trophic status, tidal regime, river influence, turbidity, and so on. Time-series analysis coupled with standardised 3-mode Principal Component Analyses, Partial Triadic Analyses and correlations were used to assess bi-decadal variability and ecosystems trajectories, and to detect the large-scale, regional and local drivers. Overall results highlight two abrupt changes in 2001 and 2005. The\&nbsp;bi-decadal changes are related to changes in large-scale and regional climate; detected through proxies of temperature and atmospheric\&nbsp;circulation, as well as through river\&nbsp;discharge. Ecosystem trajectories usually move towards an increase in temperature, salinity and/or a decrease in chlorophyll-a, nutrients and particulate matter. However, the magnitude of change, the year-to-year variability and the sensitivity to the 2001 and 2005 changes vary among the ecosystems. This study highlights the need to perform long-term time series and combining data sets as well as multi-ecosystem and local studies to better understand long-term variability of coastal ecosystems and its associated drivers.},
	issn = {0171-8630},
	doi = {10.3354/meps13577},
	url = {https://doi.org/10.3354/meps13577},
	author = {Lheureux, Arnaud and Savoye, Nicolas and Del Amo, Yolanda and Goberville, Eric and Bozec, Yann and Elsa Breton and Conan, Pascal and L{\textquoteright}Helguen, St{\'e}phane and Mousseau, Laure and Raimbault, Patrick and Rimelin-Maury, Peggy and Seuront, Laurent and Vuillemin, Renaud and Caparros, Jocelyne and Cariou, Thierry and Cordier, MA and Corre, Anne-Marie and Costes, Laurence and Crispi, O. and Muriel Crouvoisier and de Latour, HdL and Derriennic, Herv{\'e} and Devesa, J{\'e}r{\'e}my and Durozier, Ma{\"\i}a and Ferreira, Sophie and Garcia, Nicole and Emilie Grossteffan and Gueux, Aurore and Lafont, M and Lagadec, V{\'e}ronique and Lecuyer, Eric and Leroux, C{\'e}dric and Mac{\'e}, Eric and Maria, E and Mornet, L and Antoine Nowaczyk and Parra, M and Petit, Fabienne and David, V}
}
@article {8654,
	title = {Biological invasions in France: Alarming costs and even more alarming knowledge gaps},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {191 - 224},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.59134},
	url = {https://neobiota.pensoft.net/article/59134/},
	author = {Renault, David and Manfrini, El{\'e}na and Leroy, Boris and Diagne, Christophe and Ballesteros-Mejia, Liliana and Angulo, Elena and Courchamp, Franck}
}
@article {7766,
	title = {Biosorption capacity of genus Dictyota facing organochlorine pesticide pollutions in coastal areas of the Lesser Antilles},
	journal = {Aquatic Botany},
	volume = {169},
	year = {2021},
	month = {Jan-02-2021},
	pages = {103346},
	issn = {03043770},
	doi = {10.1016/j.aquabot.2020.103346},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S030437702030156X},
	author = {Contarini, Paul-Emile and Charlotte R. Dromard}
}
@article {8086,
	title = {The Chicken and Egg Situation of Thyroid Hormone and Glucocorticoid Signaling during Postembryonic Development},
	journal = {Endocrinology},
	volume = {162},
	year = {2021},
	month = {Jan-03-2021},
	issn = {0013-7227},
	doi = {10.1210/endocr/bqaa243},
	url = {https://academic.oup.com/endo/article/doi/10.1210/endocr/bqaa243/6054192},
	author = {Sylvie Dufour and Sachs, Laurent M}
}
@article {8387,
	title = {A comment on {\textquotedblleft}Morphologic and genetic characterization of Corsican and Sardinian trout with comments on Salmotaxonomy{\textquotedblright} by Delling et al. (2020): protected Tyrrhenian trouts must be named},
	journal = {Knowledge \& Management of Aquatic Ecosystems},
	year = {2021},
	month = {Jan-01-2021},
	pages = {6},
	doi = {10.1051/kmae/2021006},
	url = {https://www.kmae-journal.org/10.1051/kmae/2021006},
	author = {Denys, Ga{\"e}l}
}
@article {8388,
	title = {The complete mitochondrial genome of Barbatula quignardi (B{\u a}cescu-Me{\c s}ter, 1967) (Teleostei, Nemacheilidae)},
	journal = {Cybium},
	volume = {45},
	year = {2021},
	pages = {39-42},
	abstract = {The complete mitochondrial DNA sequence of Barbatula quignardi (Teleostei, Nemacheilidae) was sequenced from a museum voucher caught in its type locality (Lez River). The sequence was 16,641 bp in length, consisted of 13 protein-coding genes, 22 transfer RNA genes including 2 tRNA-Leu and 2 tRNA-Ser, 2 ribosomic RNA genes and the control region. Intergenic space and overlapping gene sequences were found. The base composition of the whole mtDNA was 28.7\% A, 26.2\% T, 27.2\% C and 17.9\% G.},
	author = {Gauliard, Camille and Denys, Ga{\"e}l and Perea, Silvia and Dettai, Agn{\`e}s}
}
@article {8143,
	title = {Cumulative effects of marine renewable energy and climate change on ecosystem properties: Sensitivity of ecological network analysis},
	journal = {Ecological Indicators},
	volume = {121},
	year = {2021},
	month = {Jan-02-2021},
	pages = {107128},
	issn = {1470160X},
	doi = {10.1016/j.ecolind.2020.107128},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1470160X20310670},
	author = {Nogues, Quentin and Raoux, Aurore and Araignous, Emma and Chaalali, Aur{\'e}lie and Hattab, Tarek and Leroy, Boris and Ben Rais Lasram, Frida and David, Val{\'e}rie and Le Loc{\textquoteright}h, Francois and Dauvin, Jean-Claude and Nathalie Niquil}
}
@article {8051,
	title = {Data Curation, Fisheries and Ecosystem-based Management : The Case Study of the Pecheker Database},
	journal = {International Journal of Digital Curation},
	volume = {16},
	year = {2021},
	pages = {31},
	abstract = {The scientific monitoring of the Southern Ocean French fishing industry is based on the use the Pecheker database. Pecheker is dedicated to the digital curation of the data collected on field by scientific observers and which analysis allows the scientists of the Mus{\'e}um national d{\textquoteright}Histoire naturelle institution to provide guidelines and advice for the regulation of the fishing activity, the protection of the fish stocks and the protection of the marine ecosystems. The template of Pecheker has been developed to make the database adapted to the ecosystem-based management concept. Considering the global context of biodiversity erosion, this modern approach of management aims to take account of the environmental background of the fisheries to ensure their sustainable development. Completeness and high quality of the raw data is a key element for an ecosystem-based management database such as Pecheker. Here, we present the development of this database as a case study of fisheries data curation to be shared with the readers. Full code to deploy a database based on the Pecheker template is provided in supplementary materials. Considering the success factors we could identify, we propose a discussion about how the community could build a global fisheries information system based on a network of small databases including interoperability standards.},
	issn = {1746-8256},
	doi = {10.2218/ijdc.v16i1.674},
	url = {http://www.ijdc.net/article/view/674},
	author = {Martin Alexis and Charlotte Chazeau and Nicolas Gasco and Guy Duhamel and Patrice Pruvost}
}
@article {8886,
	title = {Detailed assessment of the reported economic costs of invasive species in Australia},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {511 - 550},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.5883410.3897/neobiota.67.58834.suppl1},
	url = {https://neobiota.pensoft.net/article/58834/},
	author = {Bradshaw, Corey J. A. and Hoskins, Andrew J. and Haubrock, Phillip J. and Cuthbert, Ross N. and Diagne, Christophe and Leroy, Boris and Andrews, Lindell and Page, Brad and Cassey, Phill and Sheppard, Andy W. and Courchamp, Franck}
}
@article {8357,
	title = {Development of robust assessment methods and harvest strategies for spatially complex, multi-jurisdictional toothfish fisheries in the Southern Ocean},
	year = {2021},
	month = {2021},
	pages = {266 pp},
	institution = {Fisheries Research and Development Corporation Project n{\textdegree}2013/013},
	type = {Final report},
	url = {http://ecite.utas.edu.au/143108},
	author = {Philippe Ziegler and Burch, Paul and Clara P{\'e}ron and Welsford, Dirk and Bryn, Farmer and Yates, Peter and Potts, J. and Woodcock, Emma and Barnes, T. and Guy Duhamel and Gardner, C.}
}
@article {9116,
	title = {Do Hydrothermal Shrimp Smell Vents? },
	journal = {Insects},
	volume = {12(11)},
	year = {2021},
	pages = {1043},
	abstract = {Deep-sea species endemic to hydrothermal vents face the critical challenge of detecting active sites in a vast environment devoid of sunlight. This certainly requires specific sensory abilities, among which olfaction could be a relevant sensory modality, since chemical compounds in hydrothermal fluids or food odors could potentially serve as orientation cues. The temperature of the vent fluid might also be used for locating vent sites. The objective of this study is to observe the following key behaviors of olfaction in hydrothermal shrimp, which could provide an insight into their olfactory capacities: (1) grooming behavior; (2) attraction to environmental cues (food odors and fluid markers). We designed experiments at both deep-sea and atmospheric pressure to assess the behavior of the vent shrimp Rimicaris exoculata and Mirocaris fortunata, as well as of the coastal species Palaemon elegans and Palaemon serratus for comparison. Here, we show that hydrothermal shrimp groom their sensory appendages similarly to other crustaceans, but this does not clean the dense bacterial biofilm that covers the olfactory structures. These shrimp have previously been shown to possess functional sensory structures, and to detect the environmental olfactory signals tested, but we do not observe significant attraction behavior here. Only temperature, as a signature of vent fluids, clearly attracts vent shrimp and thus is confirmed to be a relevant signal for orientation in their environment.},
	keywords = {antennules; behavior; chemosensory perception; grooming; hydrothermal shrimp; olfaction; thermal detection},
	doi = {doi: 10.3390/insects12111043},
	author = {Ravaux, Juliette and Machon, Julia and Shillito, Bruce and Barth{\'e}l{\'e}my, Dominique and Amand, Louis and Cabral, M{\'e}lanie and Delcour, Elise and Zbinden, Magali}
}
@article {9115,
	title = {Do Hydrothermal Shrimp Smell Vents?},
	journal = {Insects},
	volume = {12},
	year = {2021},
	month = {2021 Nov 20},
	abstract = {<p>Deep-sea species endemic to hydrothermal vents face the critical challenge of detecting active sites in a vast environment devoid of sunlight. This certainly requires specific sensory abilities, among which olfaction could be a relevant sensory modality, since chemical compounds in hydrothermal fluids or food odors could potentially serve as orientation cues. The temperature of the vent fluid might also be used for locating vent sites. The objective of this study is to observe the following key behaviors of olfaction in hydrothermal shrimp, which could provide an insight into their olfactory capacities: (1) grooming behavior; (2) attraction to environmental cues (food odors and fluid markers). We designed experiments at both deep-sea and atmospheric pressure to assess the behavior of the vent shrimp and , as well as of the coastal species and for comparison. Here, we show that hydrothermal shrimp groom their sensory appendages similarly to other crustaceans, but this does not clean the dense bacterial biofilm that covers the olfactory structures. These shrimp have previously been shown to possess functional sensory structures, and to detect the environmental olfactory signals tested, but we do not observe significant attraction behavior here. Only temperature, as a signature of vent fluids, clearly attracts vent shrimp and thus is confirmed to be a relevant signal for orientation in their environment.</p>
},
	issn = {2075-4450},
	doi = {10.3390/insects12111043},
	author = {Ravaux, Juliette and Machon, Julia and Shillito, Bruce and Barth{\'e}l{\'e}my, Dominique and Amand, Louis and Cabral, M{\'e}lanie and Delcour, Elise and Zbinden, Magali}
}
@article {9057,
	title = {Do Hydrothermal Shrimp Smell Vents?},
	journal = {Insects},
	volume = {12},
	year = {2021},
	month = {Jan-11-2021},
	pages = {1043},
	doi = {10.3390/insects12111043},
	url = {https://www.mdpi.com/2075-4450/12/11/1043},
	author = {Juliette Ravaux and Machon, Julia and Shillito, Bruce and Barth{\'e}l{\'e}my, Dominique and Amand, Louis and Cabral, M{\'e}lanie and Delcour, Elise and Zbinden, Magali}
}
@article {8655,
	title = {The economic costs of biological invasions in Africa: a growing but neglected threat?},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {11 - 51},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.59132},
	url = {https://neobiota.pensoft.net/article/59132/},
	author = {Diagne, Christophe and Turbelin, Anna J. and Moodley, Desika and Novoa, Ana and Leroy, Boris and Angulo, Elena and Adamjy, Tasnime and Dia, Cheikh A.K.M. and Taheri, Ahmed and Tambo, Justice and Dobigny, Gauthier and Courchamp, Franck}
}
@article {8656,
	title = {Economic costs of biological invasions within North America},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {07/2021},
	pages = {485-510},
	author = {Crystal-Ornelas, Rob and Hudgins, Emma J and Cuthbert, Ross N. and Haubrock, Phillip J. and Fantle-Lepczyk, J and Angulo, Elena and Kramer, Andrew M. and Ballesteros-Mejia, Liliana and Leroy, Boris and Leung, Brian and L{\'o}pez-L{\'o}pez, E and Diagne, Christophe and Courchamp, Franck}
}
@article {8144,
	title = {Economic costs of invasive alien species across Europe},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {153 - 190},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.58196},
	url = {https://neobiota.pensoft.net/article/58196/},
	author = {Haubrock, Phillip J. and Turbelin, Anna J. and Cuthbert, Ross N. and Novoa, Ana and Taylor, Nigel G. and Angulo, Elena and Ballesteros-Mejia, Liliana and Bodey, Thomas W. and Capinha, C{\'e}sar and Diagne, Christophe and Essl, Franz and Golivets, Marina and Kirichenko, Natalia and Kourantidou, Melina and Leroy, Boris and Renault, David and Verbrugge, Laura and Courchamp, Franck}
}
@article {8653,
	title = {Economic costs of invasive alien species in the Mediterranean basin},
	journal = {NeoBiota},
	volume = {67},
	year = {2021},
	month = {May-07-2023},
	pages = {427 - 458},
	issn = {1619-0033},
	doi = {10.3897/neobiota.67.5892610.3897/neobiota.67.58926.suppl110.3897/neobiota.67.58926.suppl2},
	url = {https://neobiota.pensoft.net/article/58926/},
	author = {Kourantidou, Melina and Cuthbert, Ross N. and Haubrock, Phillip J. and Novoa, Ana and Taylor, Nigel G. and Leroy, Boris and Capinha, C{\'e}sar and Renault, David and Angulo, Elena and Diagne, Christophe and Courchamp, Franck}
}
@article {8404,
	title = {Eleotris (Teleostei: Eleotridae) from Indonesia with description of three news species},
	journal = {Pacific Science},
	volume = {75},
	year = {2021},
	month = {11/2021},
	pages = {469-496},
	abstract = {The species of Eleotris from Indonesia are reviewed and compared to the known species described from the area. Nine species are recognized including three new species in the {\textquoteleft}melanosoma{\textquoteright} neuromast pattern group. These are described using genetic and morpho-meristic approaches. The new species differ by a high percentage of genetic divergence in partial COI gene (652 bp) and by several characters including the number of pectoral fin rays, the number of scales in lateral, predorsal, forward and zigzag series. The main characteristics of the other known species in the area in the {\textquoteleft}melanosoma{\textquoteright} group, Eleotris melanosoma Bleeker, 1853 and Eleotris macrolepis (Bleeker, 1875), both belonging to this group, are given for comparison. A key for Eleotris species from Indonesia is provided.},
	doi = {https://doi.org/10.2984/75.4.2},
	author = {Marion Mennesson and Philippe Keith and Hubert, Nicolas}
}
@article {8547,
	title = {Epizoic diatoms on sea turtles and their relationship to host species, behaviour and biogeography: a morphological approach},
	journal = {European Journal of Phycology},
	volume = {56},
	year = {2021},
	month = {Feb-10-2021},
	pages = {359 - 372},
	issn = {0967-0262},
	doi = {10.1080/09670262.2020.1843077},
	url = {https://www.tandfonline.com/doi/full/10.1080/09670262.2020.1843077},
	author = {Riaux-Gobin, Catherine and Ashworth, Matt P. and Kociolek, J.Patrick and Chevallier, Damien and Saenz-Agudelo, Pablo and Witkowski, Andrzej and Daniszewska-Kowalczyk, Genowefa and Gaspar, Cecile and Lagant, Magali and Touron, Margaux and Carpentier, Alice and Stabile, Vie and Planes, Serge}
}
@article {8466,
	title = {Estimating ecotoxicological effects of chemicals on tropical reef-building corals; a systematic review protocol},
	journal = {Environmental Evidence},
	volume = {10},
	year = {2021},
	month = {Dec-11-2021},
	doi = {10.1186/s13750-021-00250-y},
	url = {https://environmentalevidencejournal.biomedcentral.com/articles/10.1186/s13750-021-00250-y},
	author = {Ou{\'e}draogo, Dakis-Yaoba and Perceval, Olivier and Ferrier-Pages, Christine and Domart-Coulon, Isabelle and H{\'e}douin, Laetitia and Burga, Karen and Mireille M.M. Guillaume and Calvayrac, Christophe and Castelin, Magalie and Reyjol, Yorick and Sordello, Romain}
}
@article {8200,
	title = {Evidence on the impacts of chemicals arising from human activity on tropical reef-building corals; a systematic map},
	journal = {Environmental Evidence},
	volume = {10},
	year = {2021},
	month = {Sep-22-2021},
	doi = {10.1186/s13750-021-00237-9},
	url = {https://environmentalevidencejournal.biomedcentral.com/articles/10.1186/s13750-021-00237-9},
	author = {Ou{\'e}draogo, Dakis-Yaoba and Delaunay, Mathilde and Sordello, Romain and H{\'e}douin, L. and Castelin, Magalie and Perceval, Olivier and Domart-Coulon, Isabelle and Burga, Karen and Ferrier-Pages, Christine and Multon, Romane and Mireille M.M. Guillaume and L{\'e}ger, Cl{\'e}ment and Calvayrac, Christophe and Joannot, Pascale and Reyjol, Yorick}
}
@article {7965,
	title = {First Assessment of the Benthic Meiofauna Sensitivity to Low Human-Impacted Mangroves in French Guiana},
	journal = {Forests},
	volume = {12},
	year = {2021},
	month = {Jan-03-2021},
	pages = {338},
	doi = {10.3390/f12030338},
	url = {https://www.mdpi.com/1999-4907/12/3/338},
	author = {Michelet, Claire and Zeppilli, Daniela and C{\'e}dric Hubas and Baldrighi, Elisa and Cuny, Philippe and Guillaume Dirberg and Militon, C{\'e}cile and Walcker, Romain and Lamy, Dominique and J{\'e}z{\'e}quel, Ronan and Receveur, Justine and Gilbert, Franck and Houssainy, Amonda El and Dufour, Aur{\'e}lie and Heimb{\"u}rger-Boavida, Lars-Eric and Bihannic, Isabelle and Sylvi, L{\'e}a and Vivier, Baptiste and Michaud, Emma}
}
@article {8349,
	title = {Four-Year Temporal Study of an Intertidal Artificial Structure in the English Channel},
	journal = {Journal of Marine Science and Engineering},
	volume = {9},
	year = {2021},
	month = {Jan-11-2021},
	pages = {1174},
	doi = {10.3390/jmse9111174},
	url = {https://www.mdpi.com/2077-1312/9/11/1174},
	author = {Dauvin, Jean-Claude and Deloor, Ma{\"e}l and Pezy, Jean-Philippe and Raoux, Aurore and Pascal Claquin and Foveau, Aur{\'e}lie}
}
@article {8392,
	title = {Global systematic diversity, range distributions, conservation and taxonomic assessments of graylings (Teleostei: Salmonidae; Thymallus spp.)Abstract},
	journal = {Organisms Diversity \& Evolution},
	volume = {21},
	year = {2021},
	month = {Jan-03-2021},
	pages = {25 - 42},
	issn = {1439-6092},
	doi = {10.1007/s13127-020-00468-7},
	url = {http://link.springer.com/10.1007/s13127-020-00468-7},
	author = {Weiss, Steven J. and Gon{\c c}alves, Duarte V. and Secci-Petretto, Giulia and Englmaier, Gernot K. and Gomes-Dos-Santos, Andr{\'e} and Denys, Ga{\"e}l and Persat, Henri and Antonov, Alexander and Hahn, Christoph and Taylor, Eric B. and Froufe, Elsa}
}
@article {8133,
	title = {Gonadal transcriptomes associated with sex phenotypes provide potential male and female candidate genes of sex determination or early differentiation in Crassostrea gigas, a sequential hermaphrodite mollusc.},
	journal = {BMC Genomics},
	volume = {22},
	year = {2021},
	month = {2021 Aug 09},
	pages = {609},
	abstract = {<p><strong>BACKGROUND: </strong>In the animal kingdom, mollusca is an important phylum of the Lophotrochozoa. However, few studies have investigated the molecular cascade of sex determination/early gonadal differentiation within this phylum. The oyster Crassostrea gigas is a sequential irregular hermaphrodite mollusc of economic, physiological and phylogenetic importance. Although some studies identified genes of its sex-determining/-differentiating pathway, this particular topic remains to be further deepened, in particular with regard to the expression patterns. Indeed, these patterns need to cover the entire period of sex lability and have to be associated to future sex phenotypes, usually impossible to establish in this sequential hermaphrodite. This is why we performed a gonadal RNA-Seq analysis of diploid male and female oysters that have not changed sex for 4 years, sampled during the entire time-window of sex determination/early sex differentiation (stages 0 and 3 of the gametogenetic cycle). This individual long-term monitoring gave us the opportunity to explain the molecular expression patterns in the light of the most statistically likely future sex of each oyster.</p>

<p><strong>RESULTS: </strong>The differential gene expression analysis of gonadal transcriptomes revealed that 9723 genes were differentially expressed between gametogenetic stages, and 141 between sexes (98 and 43 genes highly expressed in females and males, respectively). Eighty-four genes were both stage- and sex-specific, 57 of them being highly expressed at the time of sex determination/early sex differentiation. These 4 novel genes including Trophoblast glycoprotein-like, Protein PML-like, Protein singed-like and PREDICTED: paramyosin, while being supported by RT-qPCR, displayed sexually dimorphic gene expression patterns.</p>

<p><strong>CONCLUSIONS: </strong>This gonadal transcriptome analysis, the first one associated with sex phenotypes in C. gigas, revealed 57 genes highly expressed in stage 0 or 3 of gametogenesis and which could be linked to the future sex of the individuals. While further study will be needed to suggest a role for these factors, some could certainly be original potential actors involved in sex determination/early sex differentiation, like paramyosin and could be used to predict the future sex of oysters.</p>
},
	keywords = {Animals, Crassostrea, Female, Gene Expression Profiling, Gonads, Humans, Male, Phenotype, Phylogeny, Sex Differentiation, Transcriptome},
	issn = {1471-2164},
	doi = {10.1186/s12864-021-07838-1},
	author = {Broquard, Coralie and Saowaros, Suwansa-Ard and Lepoittevin, M{\'e}lanie and Degremont, Lionel and Lamy, Jean-Baptiste and Morga, Benjamin and Elizur, Abigail and Anne-Sophie Martinez}
}
@article {8139,
	title = {High and rising economic costs of biological invasions worldwide},
	journal = {Nature},
	volume = {592},
	year = {2021},
	month = {Oct-04-2022},
	pages = {571 - 576},
	issn = {0028-0836},
	doi = {10.1038/s41586-021-03405-6},
	url = {http://www.nature.com/articles/s41586-021-03405-6},
	author = {Diagne, Christophe and Leroy, Boris and Vaissi{\`e}re, Anne-Charlotte and Gozlan, Rodolphe E. and Roiz, David and Jari{\'c}, Ivan and Salles, Jean-Michel and Bradshaw, Corey J. A. and Courchamp, Franck}
}
@article {8109,
	title = {Influence of infrastructure material composition and microtopography on marine biofilm growth and photobiology},
	journal = {Biofouling},
	year = {2021},
	month = {Apr-08-2022},
	pages = {1 - 17},
	issn = {0892-7014},
	doi = {10.1080/08927014.2021.1959918},
	url = {https://www.tandfonline.com/doi/full/10.1080/08927014.2021.1959918},
	author = {Vivier, Baptiste and Pascal Claquin and Lelong, Christophe and Lesage, Quentin and Peccate, Mathias and Hamel, Bastien and Georges, Marine and Bourguiba, Amel and Sebaibi, Nassim and Boutouil, Mohamed and Goux, Didier and Dauvin, Jean-Claude and Francis Orvain}
}
@article {9129,
	title = {Interactions between Filter-Feeding Bivalves and Toxic Diatoms: Influence on the Feeding Behavior of Crassostrea gigas and Pecten maximus and on Toxin Production by Pseudo-nitzschia},
	journal = {Toxins},
	volume = {13},
	year = {2021},
	month = {Jan-08-2021},
	pages = {577},
	doi = {10.3390/toxins13080577},
	url = {https://www.mdpi.com/2072-6651/13/8/577},
	author = {Sauvey, Aurore and Denis, Fran{\c c}oise and H{\'e}garet, H{\'e}l{\`e}ne and Le Roy, Bertrand and Lelong, Christophe and Jolly, Orianne and Pavie, Marie and Juliette Fauchot}
}
@article {8798,
	title = {Interdependence of thyroid and corticosteroid signalling in vertebrate developmental transitions},
	journal = {Frontiers in Ecology and Evolution},
	volume = {9},
	year = {2021},
	pages = {735487},
	doi = {10.3389/fevo.2021.735487},
	author = {Karine Rousseau and Sylvie Dufour and Sachs, Laurent M}
}
@article {9363,
	title = {Interstitial Annelida},
	journal = {Diversity},
	volume = {13},
	year = {2021},
	month = {Jan-02-2021},
	pages = {77},
	doi = {10.3390/d13020077},
	url = {https://www.mdpi.com/1424-2818/13/2/77},
	author = {Worsaae, Katrine and Kerbl, Alexandra and Domenico, Maikon Di and Gonzalez, Brett C. and Bekkouche, Nicolas and Mart{\'\i}nez, Alejandro}
}
@article {8446,
	title = {Involvement of RFamide neuropeptides in polyp contraction of the adult scleractinian corals Euphyllia ancora and Stylophora pistillata},
	journal = {General and Comparative Endocrinology},
	volume = {314},
	year = {2021},
	month = {Jan-12-2021},
	pages = {113905},
	issn = {00166480},
	doi = {10.1016/j.ygcen.2021.113905},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016648021001982},
	author = {Zhang, Yan and Shikina, Shinya and Ho, Yu-Ying and Chiu, Yi-Ling and I-Chen Yao, Jack and C{\'e}line Zatylny-Gaudin and Sylvie Dufour and Chang, Ching-Fong}
}
@article {8794,
	title = {Involvement of Transforming Growth Factor Beta family genes in gonadal differentiation in Japanese eel, Anguilla japonica, according to sex-related gene expressions},
	journal = {Cells},
	volume = {10},
	year = {2021},
	pages = {3007},
	url = {https://doi.org/10.3390/cells10113007},
	author = {Lin, Chien-Ju and Jeng, Shan-Ru and Lei, Zhen-Yuan and Yueh, When-Shiun and Sylvie Dufour and Wu, Guan-Chung and Chang, Ching-Fong}
}
@article {8741,
	title = {Kakila database: Towards a FAIR community approved database of cetacean presence in the waters of the Guadeloupe archipelago based on citizen science},
	journal = {Biodiversity Data Journal},
	volume = {9},
	year = {2021},
	month = {Oct-07-2022},
	issn = {1314-2836},
	doi = {10.3897/BDJ.9.e69022},
	url = {https://bdj.pensoft.net/article/69022/},
	author = {Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne and Le Bras, Yvan and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne and Le Bras, Yvan and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne and Le Bras, Yvan and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne and Le Bras, Yvan and Lerigoleur, Emilie and Pascal Jean Lopez and Madon, B{\'e}n{\'e}dicte and Sananikone, Julien and S{\`e}be, Maxime and Le Berre, Iwan and Jung, Jean-Luc and Coch{\'e}, Lorraine and Arnaud, Elie and Bouveret, Laurent and David, Romain and Foulquier, Eric and Gandilhon, Nad{\`e}ge and Jeannesson, Etienne}
}
@article {7211,
	title = {Links between introduced fish and zooplanktonic and zoobenthic food sources in the food webs of two reservoirs of a semi-arid zone in Algeria},
	journal = {African Journal of Aquatic Science},
	volume = {46},
	year = {2021},
	month = {09/2020},
	pages = {33- 44},
	abstract = {Few studies have focused on the trophic functioning of the reservoirs in Algeria. The study of the gut contents of fish species, as well as the analysis of the stable isotopes of 13C and 15N in the environment, were carried out on samples collected during spring 2010 in two reservoirs: Ghrib and Harreza of the upper Cheliff plain (Algeria) within a semi-arid climate zone. In each of the reservoirs, 13C and 15N were measured in sediments, particulate organic matter (POM), macrophytes, zooplankton, zoobenthos and fish. The isotopic analysis shows that the carbon values that supply both reservoirs, Ghrib and Harreza, were -31.16 {\textpm} 0.05 \&lt; 13C \&lt; -18.01 {\textpm} 0.21{\textperthousand} and -30.82 {\textpm} 0.07 \&lt; 13C \&lt; -17.24 {\textpm} 3.50{\textperthousand}, respectively. The carnivorous fish Sander lucioperca, and Abramis brama, an omnivorous fish, were allocated to the top of the food web in Ghrib and Harreza reservoirs, respectively. In the latter, a reservoir with low hydrodynamism and depth, the food web is simpler with a single fish species, which benefits from both benthic and pelagic sources. In Ghrib, a deeper dam with stronger hydrodynamics, only the riverine crab Potamon algeriense exploits the benthic sources, whereas fish mainly feed on zooplankton},
	issn = {1608-5914},
	doi = {10.2989/16085914.2020.1787124},
	url = {https://www.tandfonline.com/doi/full/10.2989/16085914.2020.1787124},
	author = {Djezzar, M and Mortillaro, JM and Doumandji, SE and Tarik Meziane}
}
@article {8094,
	title = {Long term relationship between farming damselfish, predators, competitors and benthic habitat on coral reefs of Moorea Island},
	journal = {Scientific Reports},
	volume = {11},
	year = {2021},
	month = {07/2021},
	pages = {14548},
	doi = {10.1038/s41598-021-94010-0},
	url = {http://www.nature.com/articles/s41598-021-94010-0},
	author = {Feeney, William E. and Fr{\'e}d{\'e}ric Bertucci and Gairin, Emma and Siu, Gilles and Waqalevu, Viliame and Antoine, Morgan and Lison de Loma, Thierry and Planes, Serge and Galzin, Ren{\'e} and Lecchini, David}
}
@article {7854,
	title = {Marine artificial reefs, a meta-analysis of their design, objectives and effectiveness},
	journal = {Global Ecology and Conservation},
	year = {2021},
	month = {Jan-03-2021},
	pages = {e01538},
	issn = {23519894},
	doi = {10.1016/j.gecco.2021.e01538},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2351989421000883},
	author = {Vivier, Baptiste and Dauvin, Jean-Claude and Navon, Maxime and Anne-Marie Rusig and Isabelle Mussio and Francis Orvain and Boutouil, Mohamed and Pascal Claquin}
}
@article {8085,
	title = {Molecular and cellular regulation on sex change in hermaphroditic fish, with a special focus on protandrous black porgy, Acanthopagrus schlegelii.},
	journal = {Mol Cell Endocrinol},
	volume = {520},
	year = {2021},
	month = {2021 01 15},
	pages = {111069},
	abstract = {<p>In teleost fish, sex can be determined by genetic factors, environmental factors, or both. Unlike in gonochoristic fish, in which sex is fixed in adults, sex can change in adults of hermaphroditic fish species. Thus, sex is generated during the initial gonadal differentiation stage (primary sex differentiation) and later during sexual fate alternation (secondary sex differentiation) in hermaphroditic fish species. Depending on the species, sex phase alternation can be induced by endogenous cues (such as individual age and body size) or by social cues (such as sex ratio or relative body size within the population). In general, the fluctuation in plasma estradiol-17β (E2) levels is correlated with the sexual fate alternation in hermaphroditic fish. Hormonal treatments can artificially induce sexual phase alternation in sequential hermaphroditic fishes, but in a transient and reversible manner. This is the case for the E2-induced female phase in protandrous black porgy and the methyltestosterone (MT)- or aromatase inhibitor (AI)-induced male phase in protogynous grouper. Recent reviews have focused on the different forms of sex change in fish who undergo sequential sex change, especially in terms of gene expression and the role of hormones. In this review, we use the protandrous black porgy, a nonsocial cue-influenced hermaphroditic species, with digonic gonads (ovarian and testis separated by a connective tissue), as a model to describe our findings and discuss the molecular and cellular regulation of sexual fate determination in hermaphroditic fish.</p>
},
	issn = {1872-8057},
	doi = {10.1016/j.mce.2020.111069},
	author = {Wu, Guan-Chung and Sylvie Dufour and Chang, Ching-Fong}
}
@article {7996,
	title = {Molecular and physiological characterization of a crustacean cardioactive signaling system in a lophotrochozoan - the Pacific oyster (Crassostrea gigas): a role in reproduction and salinity acclimation.},
	journal = {J Exp Biol},
	volume = {224},
	year = {2021},
	month = {2021 May 15},
	abstract = {<p>The crustacean cardioactive peptide (CCAP) is an important neuropeptide involved in the regulation of a variety of physiological processes in arthropods. Although this family of peptides has an ancestral origin, its function remains poorly understood among protostome species - apart from arthropods. We functionally characterized three G protein-coupled receptors (GPCRs) in the oyster Crassostrea gigas, phylogenetically related to ecdysozoan CCAP receptors (CCAPRs) and to chordate neuropeptide S receptors (NPSRs). Cragi-CCAPR1 and Cragi-CCAPR2 were specifically activated by the Cragi-CCAP1 and Cragi-CCAP2 peptides, respectively, both derived from the same CCAP precursor. In contrast, Cragi-CCAPR3 was only partially activated by CCAP1 and CCAP2 at high concentrations. The Cragi-CCAPR1 and Cragi-CCAPR2 genes were expressed in various adult tissues. They are both most expressed in the gills, while Cragi-CCAPR3 is mainly expressed in the visceral ganglia (VG). Cragi-CCAP precursor transcripts are higher in the VG, the labial palps and the gills. Receptor and ligand-encoding transcripts are more abundantly expressed in the gonads in the first stages of gametogenesis, while the Cragi-CCAP precursor is upregulated in the VG in the last stages of gametogenesis. This suggests a role of the CCAP signaling system in the regulation of reproductive processes. A role in water and ionic regulation is also supported considering the differential expression of the CCAP signaling components in oysters exposed to brackish water.</p>
},
	issn = {1477-9145},
	doi = {10.1242/jeb.241588},
	author = {R{\'e}alis-Doyelle, Emilie and Julie Schwartz and Marie-Pierre Dubos and Pascal Favrel}
}
@article {8347,
	title = {Multi-trophic markers illuminate the understanding of the functioning of a remote, low coral cover Marquesan coral reef food web},
	journal = {Scientific Reports},
	volume = {11},
	year = {2021},
	month = {Jan-12-2021},
	abstract = {We studied the food web structure and functioning of a coral reef ecosystem in the Marquesas Islands, French Polynesia, characterized by low coral cover, high sea surface temperature and meso- to eutrophic waters. The Marquesas constitute a relevant ecosystem to understand the functioning of low diversity reefs that are also subject to global change. A multi-tracer assessment of organic matter pathways was run to delineate ecosystem functioning, using analysis of fatty acids, bulk and compound specific stable isotope analysis and stable isotopes mixing models. Macroalgae and phytoplankton were the two major food sources fueling this food web with, however, some marked seasonal variations. Specifically, zooplankton relied on phytoplankton-derived organic matter and herbivorous fishes on macroalgae-derived organic matter to a much higher extent in summer than in winter (~ 75\%\&nbsp;vs. ~ 15\%, and ~ 70 to 75\%\&nbsp;vs. ~ 5 to 15\%, respectively) . Despite remarkably high δ15N values for all trophic compartments, likely due to local dynamics in the nitrogen stock, trophic levels of consumers were similar to those of other coral reef ecosystems. These findings shed light on the functioning of low coral cover systems, which are expected to expand worldwide under global change.},
	doi = {10.1038/s41598-021-00348-w},
	url = {https://www.nature.com/articles/s41598-021-00348-w},
	author = {Fey, Pauline and Parravicini, Valeriano and B{\u a}naru, Daniela and Dierking, Jan and Galzin, Ren{\'e} and Lebreton, Beno{\^\i}t and Tarik Meziane and Polunin, Nicholas V. C. and Zubia, Mayalen and Letourneur, Yves}
}
@inbook {8950,
	title = {New Insights on Biodiversity and Conservation of Amphidromous Shrimps of the Indo-Pacific islands (Decapoda: Atyidae: <i>Caridina</i>)},
	booktitle = {Recent Advances in Freshwater Crustacean Biodiversity and Conservation},
	year = {2021},
	pages = {381{\textendash}404},
	publisher = {CRC Press},
	organization = {CRC Press},
	chapter = {12},
	abstract = {Amphidromous shrimps of the genus Caridina (Crustacea: Decapoda: Atyidae) are essential components of the tropical insular freshwater ecosystems. Due to an extremely confused taxonomy, their biodiversity is poorly known and their conservation status cannot be properly assessed. However, thanks to recent advances in integrative taxonomy, the systematics of this genus progressively becomes clearer, allowing us to draw conclusions about their biogeography and conservation biology. In this chapter, we (1) review the current state of knowledge of amphidromous Caridina diversity in the light of the latest results of integrative taxonomy, (2) review the threats faced by Caridina in Indo-Pacific Islands, and (3) discuss how integrative taxonomic approaches can inform and support programs designed to limit the impacts of threatening processes on the diversity of Caridina. Finally, we provide recommendations for the conservation of these species and their habitats.},
	isbn = {9781003139560},
	doi = {10.1201/9781003139560-12},
	url = {https://www.taylorfrancis.com/chapters/new-insights-biodiversity-conservation-amphidromous-shrimps-indo-pacific-islands-decapoda-atyidae-caridina-de-mazancourt-klotz-marquet-mos-rogers-keith/e/10.1201/9781003139560-12},
	author = {de Mazancourt, V. and Klotz, W. and Marquet, G. and Mos, B. and Rogers, D.C. and Keith, P.},
	editor = {Kawai, Tadashi and Rogers, D. Christopher}
}
@inbook {8953,
	title = {New Insights on Biodiversity and Conservation of Amphidromous Shrimps of the Indo-Pacific islands (Decapoda: Atyidae: <i>Caridina</i>)},
	booktitle = {Recent Advances in Freshwater Crustacean Biodiversity and Conservation},
	year = {2021},
	pages = {381{\textendash}404},
	publisher = {CRC Press},
	organization = {CRC Press},
	chapter = {12},
	abstract = {Amphidromous shrimps of the genus Caridina (Crustacea: Decapoda: Atyidae) are essential components of the tropical insular freshwater ecosystems. Due to an extremely confused taxonomy, their biodiversity is poorly known and their conservation status cannot be properly assessed. However, thanks to recent advances in integrative taxonomy, the systematics of this genus progressively becomes clearer, allowing us to draw conclusions about their biogeography and conservation biology. In this chapter, we (1) review the current state of knowledge of amphidromous Caridina diversity in the light of the latest results of integrative taxonomy, (2) review the threats faced by Caridina in Indo-Pacific Islands, and (3) discuss how integrative taxonomic approaches can inform and support programs designed to limit the impacts of threatening processes on the diversity of Caridina. Finally, we provide recommendations for the conservation of these species and their habitats.},
	isbn = {9781003139560},
	doi = {10.1201/9781003139560-12},
	url = {https://www.taylorfrancis.com/chapters/new-insights-biodiversity-conservation-amphidromous-shrimps-indo-pacific-islands-decapoda-atyidae-caridina-de-mazancourt-klotz-marquet-mos-rogers-keith/e/10.1201/9781003139560-12},
	author = {de Mazancourt, V. and Klotz, W. and Marquet, G. and Mos, B. and Rogers, D.C. and Keith, P.},
	editor = {Kawai, Tadashi and Rogers, D. Christopher}
}
@article {9183,
	title = {A new species of Schismatogobius (Teleostei: Gobiidae) from Sulawesi (Indonesia). },
	journal = {Cybium},
	volume = {45},
	year = {2021},
	month = {02/2021},
	pages = {53-58},
	author = {Philippe Keith and Sauri, S and Busson, Frederic and Delrieu-Trottin, Erwan}
}
@article {8390,
	title = {Observations of Sea Lampreys, attached to Humpback whales, off Saint Pierre and Miquelon archipelago (Northwestern Atlantic)},
	journal = {Cahiers de Biologie Marine},
	volume = {62},
	year = {2021},
	pages = {77-81},
	abstract = {We report the two first observations of Sea Lampreys Petromyzon marinus attached to Humpback whales Megaptera novaeangliae during two whales surveys by boat the 5th September 2012 and 8th July 2020. Their size and marbled coloration certified their species identification. However, the lack of scarring does not allow to affirm a parasite/host relationship. These observations are also the first occurrences of this lamprey species in the exclusive economic zone of the French territory of Saint Pierre and Miquelon archipelago, and will be helpful for French managers.},
	author = {Urtizberea, Frank and Detcheverry, Jo{\"e}l and Denys, Ga{\"e}l}
}
@article {8059,
	title = {Pelagic habitats under the MSFD D1: scientific advice of policy relevance : recommendations to frame problems and solutions for the pelagic habitats{\textquoteright} assessment.},
	year = {2021},
	institution = {Publications Office of the European Union},
	abstract = {Pelagic habitats are a policy priority below Descriptor 1 (Biodiversity) of the Marine Strategy Framework Directive (MSFD). They are addressed under the D1C6 criterion, stating {\textquotedblleft}the condition of the habitat type, including its biotic and abiotic structure and its functions{\textellipsis}, is not adversely affected due to anthropogenic pressures{\textquotedblright}. The evaluation of pelagic habitats status is challenged by the functional and structural characteristics of pelagic habitat diversity and processes. To date, pelagic habitats assessments are lacking in common criteria and methodologies that characterize the habitat while accounting for the effects of anthropogenic pressures to achieve the Good Environmental Status (GES). It is therefore necessary to prioritise communication between scientific and policy communities and frame pelagic research to agree on common methods and approaches at regional or EU scale. This is key for achieving harmonised and comparable pelagic assessments for the MSFD. This report summarizes the outcomes on the assessment workflow of pelagic habitats of the JRC {\textquotedblleft}MSFD pelagic habitats{\textquotedblright} workshop (9th and 10th March 2021), and the need for coordinated evaluations of the scientific challenges of policy relevance. Recommendations on the MSFD implementation of D1C6, that were generated from the experts during the workshop, will be communicated to the MSFD policy groups and the EU Member States competent authorities to support future harmonised assessment of pelagic habitats.},
	doi = {10.2760/081368},
	url = {https://data.europa.eu/doi/10.2760/081368},
	author = {Magliozzi, Chiara and Druon, Jean-Noel and Palialexis, Andreas and Aguzzi, Laura and Alexande, Brittany and Antoniadis, Konstantinos and Artigas, Luis Felipe and Azzellino, Arianna and Bisinicu, Elena and Boicenco, Laura and Bojanic, Natalia and Borrello, Patrizia and Boschetti, Simona and Carmo, Vanda and Cervantes, Pablo and Coll, Marta and Curmi, Marta and Del Amo, Yolanda and Dutz, Joerg and Franc{\'e}, Janja and Garces, Esther and Gea, Guillermo and Giannakourou, Antonia and Goberville, Eric and Goffart, Anne and Gomes Pereira, Jose Nuno and Gonzalez-Quiros, Rafael and Gorokhova, Elena and Guglielmo, Letterio and Pierre H{\'e}laou{\"e}t and Henriques, Filipe and Heyden, Birgit and Jaanus, Andres and Jakobsen, Hans and Johansen, Marie and Jurgensone, Iveta and Korpinen, Samuli and Kremp, Anke and Kuosa, Harri and Labayle, Lucille and Lazar, Luminita and Abigail McQuatters-Gollop and Nincevic, Zivana and Pagou, Popi and Penna, Antonella and Pettersson, Karin and Ruiter, Hans and Skejic, Sanda and Spada, Emanuela and Spinu, Alina and Tew-Kai, Emilie and Totti, Cecilia and Tunesi, Leonardo and Vadrucci, Maria Rosaria and Valavanis, Vasilis and Varkitzi, Ioanna and Vasiliades, Lavrendios and Veldeki, Georgia and Vidjak, Olja and Vincent, Doroth{\'e}e and Zervoudaki, Soultana}
}
@article {8083,
	title = {Photoperiodic regulation of pituitary thyroid-stimulating hormone and brain deiodinase in Atlantic salmon},
	journal = {Molecular and Cellular Endocrinology},
	volume = {519},
	year = {2021},
	month = {Jan-01-2021},
	pages = {111056},
	issn = {03037207},
	doi = {10.1016/j.mce.2020.111056},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0303720720303580},
	author = {Irachi, Shotaro and Hall, Daniel J. and Fleming, Mitchell S. and Maugars, Gersende and Bj{\"o}rnsson, Bj{\"o}rn Thrandur and Sylvie Dufour and Uchida, Katsuhisa and McCormick, Stephen D.}
}
@article {8249,
	title = {Photosynthesis from stolen chloroplasts can support sea slug reproductive fitness},
	journal = {Proceedings of the Royal Society B: Biological Sciences},
	volume = {288},
	year = {2021},
	month = {May-09-2023},
	abstract = {Some sea slugs are able to steal functional chloroplasts (kleptoplasts) from their algal food sources, but the role and relevance of photosynthesis to the animal host remain controversial. While some researchers claim that kleptoplasts are slowly digestible {\textquoteleft}snacks{\textquoteright}, others advocate that they enhance the overall fitness of sea slugs much more profoundly. Our analysis shows light-dependent incorporation of\&nbsp;13C and\&nbsp;15N in the albumen gland and gonadal follicles of the sea slug\&nbsp;Elysia timida, representing translocation of photosynthates to kleptoplast-free reproductive organs. Long-chain polyunsaturated fatty acids with reported roles in reproduction were produced in the sea slug cells using labelled precursors translocated from the kleptoplasts. Finally, we report reduced fecundity of\&nbsp;E. timida\&nbsp;by limiting kleptoplast photosynthesis. The present study indicates that photosynthesis enhances the reproductive fitness of kleptoplast-bearing sea slugs, confirming the biological relevance of this remarkable association between a metazoan and an algal-derived organelle.},
	issn = {0962-8452},
	doi = {10.1098/rspb.2021.1779},
	url = {https://royalsocietypublishing.org/doi/10.1098/rspb.2021.1779},
	author = {Cartaxana, Paulo and Rey, Felisa and LeKieffre, Charlotte and Lopes, Diana and C{\'e}dric Hubas and Spangenberg, Jorge E. and Escrig, St{\'e}phane and Bruno Jesus and Calado, Gon{\c c}alo and Domingues, Ros{\'a}rio and K{\"u}hl, Michael and Calado, Ricardo and Meibom, Anders and Cruz, S{\'o}nia}
}
@article {8430,
	title = {Pituitary Hormones mRNA Abundance in the Mediterranean Sea Bass Dicentrarchus labrax: Seasonal Rhythms, Effects of Melatonin and Water Salinity},
	journal = {Frontiers in Physiology},
	volume = {12},
	year = {2021},
	month = {12/15/2021},
	pages = {774975},
	type = {Research article},
	abstract = {In fish, most hormonal productions of the pituitary gland display daily and/or seasonal<br>
rhythmic patterns under control by upstream regulators, including internal biological<br>
clocks. The pineal hormone melatonin, one main output of the clocks, acts at different<br>
levels of the neuroendocrine axis. Melatonin rhythmic production is synchronized mainly<br>
by photoperiod and temperature. Here we aimed at better understanding the role<br>
melatonin plays in regulating the pituitary hormonal productions in a species of scientific<br>
and economical interest, the euryhaline European sea bass Dicentrarchus labrax. We<br>
investigated the seasonal variations in mRNA abundance of pituitary hormones in two<br>
groups of fish raised one in sea water (SW fish), and one in brackish water (BW fish). The<br>
mRNA abundance of three melatonin receptors was also studied in the SW fish. Finally,<br>
we investigated the in vitro effects of melatonin or analogs on the mRNA abundance of<br>
pituitary hormones at two times of the year and after adaptation to different salinities.<br>
We found that (1) the reproductive hormones displayed similar mRNA seasonal profiles<br>
regardless of the fish origin, while (2) the other hormones exhibited different patterns<br>
in the SW vs. the BW fish. (3) The melatonin receptors mRNA abundance displayed<br>
seasonal variations in the SW fish. (4) Melatonin affected mRNA abundance of most<br>
of the pituitary hormones in vitro; (5) the responses to melatonin depended on its<br>
concentration, the month investigated and the salinity at which the fish were previously<br>
adapted. Our results suggest that the productions of the pituitary are a response to<br>
multiple factors from internal and external origin including melatonin. The variety of the<br>
responses described might reflect a high plasticity of the pituitary in a fish that faces<br>
multiple external conditions along its life characterized by marked daily and seasonal<br>
changes in photoperiod, temperature and salinity.},
	keywords = {annual variations, hormones, melatonin, photoperiod, pituitary, salinity, sea bass},
	doi = {10.3389/fphys.2021.774975},
	url = {https://www.frontiersin.org/articles/10.3389/fphys.2021.774975/full?\&utm_source=Email_to_authors_\&utm_medium=Email\&utm_content=T1_11.5e1_author\&utm_campaign=Email_publication\&field=\&journalName=Frontiers_in_Physiology\&id=774975},
	author = {Jack Falcon},
	editor = {Maria-Jesus Herrero and Laura-Gabriela Nisembaum}
}
@article {7778,
	title = {Prokaryotic abundance, cell size and extracellular enzymatic activity in a human impacted and mangrove dominated tropical estuary (Can Gio, vietnam)},
	journal = {Estuarine, Coastal and Shelf Science},
	year = {2021},
	month = {Jan-02-2021},
	pages = {107253},
	abstract = {Extracellular enzymatic activities constitute the first and limiting step of the whole process of organic matter (OM) cycling in aquatic ecosystems. This study aims to identify the factors controlling prokaryotes ability to hydrolyse OM in an Indo-Pacific tropical mangrove ecosystem (Can Gio, Vietnam). Prokaryotic abundance and leucine-aminopeptidase exo-proteolytic activity (EPA) were measured at vertical (from the sea-surface microlayer to bottom waters), spatial (along a transect within the estuary) and seasonal (wet and dry season) scales. Prokaryotic abundance ranged from 1.2 to 5.7\&nbsp;{\texttimes}\&nbsp;109\&nbsp;cells L-1\&nbsp;and EPA ranged from 24 to 505\&nbsp;nmol\&nbsp;L-1\&nbsp;h-1\&nbsp;that was relatively similar to other highly productive ecosystems. The estuary was poorly stratified, most probably because of high water turbulence. Yet, exo-proteolytic activity was significantly higher in bottom waters, where higher loads of suspended particulate matter were measured. Seasonal and spatial differences in EPA suggest that the nature of OM transported by the Can Gio mangrove estuary affect EPA. The latter seems to be increased by two {\textquotedblleft}uncommon{\textquotedblright} situations: the input of fresh and labile OM (e.g.\&nbsp;shrimp farm effluents) or the lack of labile OM and the need to hydrolyse refractory compounds (e.g.\&nbsp;during the dry season).},
	issn = {02727714},
	doi = {10.1016/j.ecss.2021.107253},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771421000895},
	author = {Frank David and Tarik Meziane and Marchand, Cyril and Rolland, Guillaume and Pham, Aur{\'e}lie and Thanh-Nho, Nguyen and Lamy, Dominique}
}
@article {8420,
	title = {Quantifying Cyanothece growth under DIC limitation},
	journal = {Computational and Structural Biotechnology Journal},
	year = {2021},
	month = {Jan-11-2021},
	issn = {20010370},
	doi = {10.1016/j.csbj.2021.11.036},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S2001037021005018},
	author = {Inomura, Keisuke and Masuda, Takako and Eichner, Meri and Rabouille, Sophie and Zav{\v r}el, Tomas and {\v C}erven{\'y}, Jan and Vancov{\'a}, Marie and Bern{\'a}t, Gabor and Armin, Gabrielle and Pascal Claquin and Kotabov{\'a}, Eva and Stephan, Susanne and Suggett, David J. and Deutsch, Curtis and Pr{\'a}{\v s}il, Ondrej}
}
@book {8127,
	title = {Recent Advances in Freshwater Crustacean Biodiversity and ConservationNew Insights on Biodiversity and Conservation of Amphidromous Shrimps of the Indo-Pacific islands (Decapoda: Atyidae: Caridina)},
	year = {2021},
	pages = {381 - 404},
	publisher = {CRC Press},
	organization = {CRC Press},
	edition = {1},
	doi = {10.1201/978100313956010.1201/9781003139560-12},
	url = {https://www.taylorfrancis.com/books/9781000336184},
	author = {Kawai, Tadashi and Rogers, D. Christopher and Mazancourt, V. de and Klotz, W. and Marquet, G. and Mos, B. and Rogers, D.C. and Philippe Keith},
	editor = {Kawai, Tadashi and Rogers, D. Christopher}
}
@article {8386,
	title = {Revalidation of the Spanish stone loach Barbatula hispanica (Lelek, 1987) (Teleostei, Nemacheilidae) according to morphological and mitochondrial data},
	journal = {Annales de Limnologie - International Journal of Limnology},
	volume = {57},
	year = {2021},
	month = {Jan-01-2021},
	pages = {10},
	issn = {0003-4088},
	doi = {10.1051/limn/2021007},
	url = {https://www.limnology-journal.org/10.1051/limn/2021007},
	author = {Denys, Ga{\"e}l and Perea, Silvia and Dettai, Agn{\`e}s and Gauliard, Camille and Persat, Henri and Doadrio, Ignacio}
}
@article {8145,
	title = {Revisiting species and areas of interest for conserving global mammalian phylogenetic diversity},
	journal = {Nature Communications},
	volume = {12},
	year = {2021},
	month = {Jan-12-2021},
	doi = {10.1038/s41467-021-23861-y},
	url = {http://www.nature.com/articles/s41467-021-23861-y},
	author = {Robuchon, Marine and Pavoine, Sandrine and V{\'e}ron, Simon and Delli, Giacomo and Faith, Daniel P. and Mandrici, Andrea and Pellens, Roseli and Dubois, Gr{\'e}goire and Leroy, Boris}
}
@article {8389,
	title = {The rise and fall of the ancient northern pike master sex-determining gene},
	journal = {eLife},
	volume = {10},
	year = {2021},
	month = {Apr-01-2023},
	doi = {10.7554/eLife.62858},
	url = {https://elifesciences.org/articles/62858},
	author = {Pan, Qiaowei and Feron, Romain and Jouanno, Elodie and Darras, Hugo and Herpin, Amaury and Koop, Ben and Rondeau, Eric and Goetz, Frederick W and Larson, Wesley A and Bernatchez, Louis and Tringali, Mike and Curran, Stephen S and Saillant, Eric and Denys, Ga{\"e}l and von Hippel, Frank A and Chen, Songlin and L{\'o}pez, J Andr{\'e}s and Verreycken, Hugo and Ocalewicz, Konrad and Guyomard, Rene and Eche, Camille and Lluch, Jerome and Roques, Celine and Hu, Hongxia and Tabor, Roger and DeHaan, Patrick and Nichols, Krista M and Journot, Laurent and Parrinello, Hugues and Klopp, Christophe and Interesova, Elena A and Trifonov, Vladimir and Schartl, Manfred and Postlethwait, John and Guiguen, Yann}
}
@article {9068,
	title = {Sargassum contamination and consequences for downstream uses: a review},
	journal = {Journal of Applied Phycology},
	volume = {33},
	year = {2021},
	month = {Jan-02-2021},
	pages = {567 - 602},
	issn = {0921-8971},
	doi = {10.1007/s10811-020-02250-w},
	url = {http://link.springer.com/10.1007/s10811-020-02250-w},
	author = {Devault, Damien A. and Pierre, Ronan and Marfaing, H{\'e}l{\`e}ne and Dolique, Franck and Pascal Jean Lopez}
}
@article {9067,
	title = {Sargassum Differentially Shapes the Microbiota Composition and Diversity at Coastal Tide Sites and Inland Storage Sites on Caribbean Islands},
	journal = {Frontiers in Microbiology},
	volume = {12},
	year = {2021},
	month = {May-10-2023},
	doi = {10.3389/fmicb.2021.701155},
	url = {https://www.frontiersin.org/articles/10.3389/fmicb.2021.701155/full},
	author = {Herv{\'e}, Vincent and Lambourdi{\`e}re, Josie and Ren{\'e}-Trouillefou, Malika and Devault, Damien Alain and Pascal Jean Lopez}
}
@article {8503,
	title = {Sargassum Differentially Shapes the Microbiota Composition and Diversity at Coastal Tide Sites and Inland Storage Sites on Caribbean Islands},
	journal = {Front Microbiol},
	volume = {12},
	year = {2021},
	month = {2021},
	pages = {701155},
	abstract = {<p>Rafts of drifting pelagic that are circulating across the Atlantic Ocean are complex ecosystems composed of a large number of associated species. Upon massive stranding, they lead to various socio-environmental issues including the inflow of contaminants and human health concerns. In this study, we used metabarcoding approaches to examine the differences in both the eukaryotic- and prokaryotic-associated communities from present in two islands of the Lesser Antilles, namely Guadeloupe and Martinique. We detected significant differences in microbial community structure and composition between landing , the surrounding seawater, and from inland storage sites. In total we identified 22,214 prokaryotic and 17,679 eukaryotic OTUs. Among them, functional prediction analyses revealed a number of prokaryotes that might contribute to organic matter decomposition, nitrogen cycling and gas production, including sulfate-reducing bacteria at coastal landing sites, and methanogenic archaea at inland storage sites. We also found that Metazoan was the most abundant group in samples, with nematode clades that presented exclusive or specific richness and abundance patterns depending on their substrate. Together, these molecular inventories of the micro- and meiofauna communities provide baseline information for further characterization of trophic interactions, algal organic matter decomposition and nutrient transfers at coastal and inland storage sites.</p>
},
	issn = {1664-302X},
	doi = {10.3389/fmicb.2021.701155},
	author = {Herv{\'e}, Vincent and Josie Lambourdi{\`e}re and Ren{\'e}-Trouillefou, Malika and Devault, Damien Alain and Pascal Jean Lopez}
}
@article {8150,
	title = {Seasonal Variations in the Biodiversity, Ecological Strategy, and Specialization of Diatoms and Copepods in a Coastal System With Phaeocystis Blooms: The Key Role of Trait Trade-Offs},
	journal = {Frontiers in Marine Science},
	volume = {8},
	year = {2021},
	month = {09/2021},
	pages = {1178},
	abstract = {Although eutrophication induced by anthropogenic nutrient enrichment is a driver of shifts in community composition and eventually a threat to marine biodiversity, the causes and consequences on ecosystem functioning remain greatly unknown. In this study, by applying a trait-based approach and measuring niche breadth of diatoms and copepods, the drivers and underlying mechanisms of the seasonal species succession of these ecological communities in a coastal system dominated in spring by\&nbsp;Phaeocystis\&nbsp;blooms were explored. It is suggested that the seasonal succession of diatoms and copepods is the result of several trade-offs among functional traits that are controlled by the seasonal abiotic and biotic pressure encountered by the plankton communities. The results of this study highlight that a trade-off between competition and predator, i.e., weak competitors are better protected against predation, plays an important role in promoting plankton species richness and triggers the\&nbsp;Phaeocystis\&nbsp;bloom. As often observed in eutrophicated ecosystems, only the biotic homogenization of the copepod community and the shift in the diet of copepods toward\&nbsp;Phaeocystis\&nbsp;detrital materials have been detected during the\&nbsp;Phaeocystis\&nbsp;bloom. The diatom and copepod communities respond synchronously to fluctuating resources and biotic conditions by successively selecting species with specific traits. This study confirms the key role of competition and predation in controlling annual plankton succession.},
	issn = {2296-7745},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2021.656300/full},
	author = {Breton, Elsa and Christaki, Urania and Benoit Sautour and Demonio, Oscar and Skouroliakou, Dimitra-Ioli and Gr{\'e}gory Beaugrand and Seuront, Laurent and Kl{\'e}parski, Lo{\"\i}ck and Poquet, Adrien and Nowaczyk, Antoine and Muriel Crouvoisier and Ferreira, Sophie and Pecqueur, David and Salmeron, Christophe and Brylinski, Jean-Michel and Lheureux, Arnaud and Goberville, Eric}
}
@article {8459,
	title = {Small- and large-scale processes including anthropogenic pressures as drivers of gastropod communities in the NE Atlantic coast: A citizen science based approach},
	journal = {Science of The Total Environment},
	year = {2021},
	month = {Jan-11-2021},
	pages = {151600},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2021.151600},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S004896972106678X},
	author = {Serranito, Bruno and Dim{\'e}glio, Tristan and Fr{\'e}d{\'e}ric Ysnel and Liz{\'e}, Anne and Eric Feunteun}
}
@article {7593,
	title = {Sources, quality and transfers of organic matter in a highly-stratified sub-Arctic coastal system (Saint-Pierre-et-Miquelon, NW Atlantic)},
	journal = {Progress in Oceanography},
	year = {2021},
	month = {Jan-11-2021},
	pages = {102483},
	abstract = {In response to ongoing global climate change, marine ecosystems in the northwest Atlantic are experiencing one of the most drastic increases in sea surface temperatures in the world. This warming can increase water column stratification and decrease surface nutrient concentrations, in turn impacting primary productivity and phytoplankton assemblages. However, the exact impacts of these changes on sources and quality of organic matter as well as its transfers to the benthic compartment remain uncertain. This survey characterized organic matter sources and quality within a highly-stratified sub-Arctic coastal system (Saint-Pierre and Miquelon) and described its transfer towards a biomass-dominant primary consumer, the sand dollar\&nbsp;Echinarachnius parma. This study analyzed fatty acid and stable isotope (δ13C and δ15N) composition of surface and bottom Particulate Organic Matter (s-POM and b-POM, respectively), Sedimentary Organic Matter (SOM) and sand dollar tissue along a near shore to offshore gradient during two contrasting seasons associated either with sharp or weak water column stratification (i.e. High\&nbsp;vs\&nbsp;Low Stratification Periods). Results revealed high relative abundances of polyunsaturated fatty acids (notably macro- and microalgae markers) in POM during the Low Stratification Period while the High Stratification Period was characterized by elevated relative abundance of saturated fatty acids indicating a higher organic matter degradation state. In addition, strong seasonal differences were also observed in food availability with four-fold higher concentrations in total suspended solids during Low\&nbsp;vs\&nbsp;High Stratification Periods. These results suggested thus multiple negative effects of stratification on pelagic-benthic coupling and POM quality. Lower nutrient repletion of surface waters during period of sharp stratification diminishes pelagic-benthic coupling by reducing food availability, POM quality and vertical transfer of organic matter. By contrast, the sediment-based diet of\&nbsp;E. parma\&nbsp;showed a low spatiotemporal variability reflecting the homogenous composition of the SOM. This study suggests that intensified water column stratification due to increasing sea surface temperatures may modify the pelagic-benthic coupling and future quality and composition of POM pools.},
	issn = {00796611},
	doi = {10.1016/j.pocean.2020.102483},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0079661120302184},
	author = {Bridier, Guillaume and Tarik Meziane and Grall, Jacques and Chauvaud, Laurent and Donnet, S{\'e}bastien and Lazure, Pascal and Fr{\'e}d{\'e}ric Olivier}
}
@article {8084,
	title = {Special features of neuroendocrine interactions between stress and reproduction in teleosts},
	journal = {General and Comparative Endocrinology},
	volume = {300},
	year = {2021},
	month = {Jan-01-2021},
	pages = {113634},
	issn = {00166480},
	doi = {10.1016/j.ygcen.2020.113634},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016648020303877},
	author = {Rousseau, Karine and Prunet, Patrick and Sylvie Dufour}
}
@article {7215,
	title = {Trophic niche of the invasive gregarious species Crepidula fornicata, in relation to ontogenic changes},
	journal = {bioRxiv},
	year = {2021},
	pages = {2020.07.30.229021},
	type = {ver. 4 peer-reviewed and recommended by Peer Community In Ecology},
	abstract = {Crepidula fornicata\&nbsp;is a common and widespread invasive gregarious species along the European coast. Among its life-history traits, well documented ontogenic changes in behavior (i.e., motile male to sessile female) suggest a potential shift in feeding strategy across its life stages. Considering the ecological significance of this species in colonized areas, understanding how conspecifics share the trophic resource is crucial. Using fatty acids (FA) and stable isotopes (SI) as complementary trophic markers, we conducted a field survey between late winter and spring to investigate the trophic niche of three ontogenic stages of\&nbsp;C. fornicata\&nbsp;that bear different sexual (male/female) and motility (motile/sessile) traits. Potential trophic sources were characterized by their pigment, FA and SI compositions and showed well discriminated compositions over the studied period. We showed that the biofilm covering\&nbsp;C. fornicata\&nbsp;shells harbored a higher biomass of primary producers (i.e., chlorophytes and diatoms) than the surrounding sediment. Over the studied period, we observed a covariation between the three ontogenic stages for both FA and SI compositions which suggest that the trophic niche of\&nbsp;C. fornicata\&nbsp;does not change significantly across its benthic life. During periods of low food availability, slipper limpets displayed an opportunistic suspension-feeding behaviour, relying on both fresh and detrital organic matter, likely coming from superficial sedimentary organic matter. However, during high food availability (i.e., spring phytoplankton bloom), all ontogenic stages largely benefited from this fresh supply of organic matter (pelagic diatoms in this case). The three ontogenic stages showed consistent differences in FA composition, and to a lesser extent in SI composition. These differences persist over time, as they originate from ontogenic physiological changes (differential growth rates, metabolic rate or gametogenesis) rather than diet discrepancies. This study revealed that multiple trophic markers allow high complementary to characterize organic matter as well as food partitioning between conspecific organisms.<br>
Recommended by PCI Ecology : https://ecology.peercommunityin.org/articles/rec?id=140},
	doi = {10.1101/2020.07.30.229021},
	url = {https://www.biorxiv.org/content/10.1101/2020.07.30.229021v1.abstract},
	author = {Androuin, Thibault and Stanislas Dubois and C{\'e}dric Hubas and Lefebvre, Gwendoline and Le Grand, Fabienne and Gauthier Schaal and Carlier, Antoine}
}
@article {8126,
	title = {Waterfalls mediate the longitudinal distribution of diadromous predatory fishes structuring communities in tropical, short, steep coastal streams},
	journal = {Freshwater Biology},
	volume = {66},
	year = {2021},
	month = {Jan-06-2021},
	pages = {1225 - 1241},
	issn = {0046-5070},
	doi = {10.1111/fwb.v66.610.1111/fwb.13712},
	url = {https://onlinelibrary.wiley.com/toc/13652427/66/6},
	author = {Ebner, Brendan C. and Donaldson, James A. and Murphy, Helen and Thuesen, Paul and Ford, Andrew and Schaffer, Jason and Philippe Keith}
}
@article {8702,
	title = {Whale depredation in the South Georgia Patagonian toothfish (Dissostichus eleginoides ) fishery in the South Atlantic: a comparison of estimation methods},
	journal = {ICES Journal of Marine Science},
	volume = {78},
	year = {2021},
	month = {Mar-11-2023},
	pages = {3817 - 3833},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsab212},
	url = {https://academic.oup.com/icesjms/article/78/10/3817/6444887},
	author = {Earl, Timothy and MacLeod, Eleanor and S{\"o}ffker, Marta and Gasco, N and Massiot-Granier, F{\'e}lix and Tixier, Paul and Darby, Christopher},
	editor = {Northridge, Simon}
}
@article {8701,
	title = {Whale depredation in the South Georgia Patagonian toothfish (Dissostichus eleginoides ) fishery in the South Atlantic: a comparison of estimation methods},
	journal = {ICES Journal of Marine Science},
	volume = {78},
	year = {2021},
	month = {Mar-11-2023},
	pages = {3817 - 3833},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsab212},
	url = {https://academic.oup.com/icesjms/article/78/10/3817/6444887},
	author = {Earl, Timothy and MacLeod, Eleanor and S{\"o}ffker, Marta and Nicolas Gasco and Massiot-Granier, F{\'e}lix and Tixier, Paul and Darby, Christopher},
	editor = {Northridge, Simon}
}
@article {6654,
	title = {Assessing the impact of toothed whale depredation on socio-ecosystems and fishery management in wide-ranging subantarctic fisheries},
	journal = {Reviews in Fish Biology and Fisheries},
	volume = {30},
	year = {2020},
	pages = {203-217},
	abstract = {Marine predators feeding on fisheries catches directly on the fishing gear, a behaviour termed {\textquotedblleft}depredation{\textquotedblright}, has emerged as a major human-wildlife conflict globally, often resulting in substantial socio-economic and ecological impacts. This study investigated the extent of this conflict in commercial Patagonian toothfish (Dissostichus eleginoides) fisheries across subantarctic waters where both killer whales (Orcinus orca) and sperm whales (Physeter macrocephalus) feed on toothfish caught on longline hooks. Using long-term datasets from six major fishing areas, from southern Chile to the Indian Ocean sector of the Southern Ocean, statistical models were developed to quantify the catch removals due to whale depredation interactions. The results indicated that these removals were large, totalling more than 6600 t of toothfish between 2009 and 2016 with an annual mean of 837 t [95\% CI 480{\textendash}1195 t], comprised of 317 t [232{\textendash}403 t] and 518 t [247{\textendash}790 t] removed by killer whales and sperm whales, respectively. Catch removals greatly varied between areas, with the largest estimates found at Crozet, where on average 279 t [179{\textendash}379 t] of toothfish per year, equivalent to 30\% [21{\textendash}37\%] of the total catches. Together, these findings provide metrics to assess the impacts of depredation interactions on the fishing industry, whale populations, fish stocks and associated ecosystems. With an estimated $15\&nbsp;M USD worth of fish depredated every year, this study highlights the large geographic scale and economic significance of the depredation issue and its potential to compromise the viability of some toothfish fisheries which are the primary socio-economic activity in subantarctic regions.},
	doi = {10.1007/s11160-020-09597-w},
	url = {https://link.springer.com/article/10.1007/s11160-020-09597-w},
	author = {Tixier, Paul and Burch, Paul and Massiot-Granier, F{\'e}lix and Ziegler, Philippe and Welsford, Dirk and Lea, Mary-Anne and Hindell, Mark A and Guinet, Christophe and Wotherspoon, Simon and Nicolas Gasco and Clara P{\'e}ron and Guy Duhamel and Arangio, Rhys and Tascheri, Renzo and Somhlaba, Sobahle and Arnould, John P. Y.}
}
@article {7133,
	title = {Basal teleosts provide new insights into the evolutionary history of teleost-duplicated aromatase},
	journal = {General and Comparative Endocrinology},
	volume = {291},
	year = {2020},
	month = {Jan-05-2020},
	pages = {113395},
	issn = {00166480},
	doi = {10.1016/j.ygcen.2020.113395},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016648019303326},
	author = {Lin, Chien-Ju and Maugars, Gersende and Lafont, Anne-Gaelle and Jeng, Shan-Ru and Wu, Guan-Chung and Sylvie Dufour and Chang, Ching-Fong}
}
@article {8551,
	title = {Behavioural inference from signal processing using animal-borne multi-sensor loggers: a novel solution to extend the knowledge of sea turtle ecology},
	journal = {Royal Society Open Science},
	volume = {7},
	year = {2020},
	month = {Jan-05-2020},
	pages = {200139},
	doi = {10.1098/rsos.200139},
	url = {https://royalsocietypublishing.org/doi/10.1098/rsos.200139},
	author = {Jeantet, Lor{\`e}ne and Planas-Bielsa, V{\'\i}ctor and Benhamou, Simon and Geiger, S{\'e}bastien and Martin, Jordan and Siegwalt, Flora and Lelong, Pierre and Gresser, Julie and Etienne, Denis and Hielard, Ga{\"e}lle and Arqu{\'e}, Alexandre and R{\'e}gis, Sidney and Lecerf, Nicolas and Frouin, C{\'e}dric and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Maillet, Thomas and Andreani, Lucas and Campistron, Guilhem and Delvaux, H{\'e}l{\`e}ne and Guyon, Christelle and Richard, Sandrine and Lefebvre, Fabien and Aubert, Nathalie and Habold, Caroline and Le Maho, Yvon and Chevallier, Damien}
}
@article {7172,
	title = {Benthic ecoregionalization based on echinoid fauna of the Southern Ocean supports current proposals of Antarctic Marine Protected Areas under IPCC scenarios of climate change},
	journal = {Global Change Biology},
	volume = {26},
	year = {2020},
	month = {Jan-04-2020},
	pages = {2161 - 2180},
	issn = {1354-1013},
	doi = {10.1111/gcb.v26.410.1111/gcb.14988},
	url = {https://onlinelibrary.wiley.com/toc/13652486/26/4},
	author = {Fabri-Ruiz, Salom{\'e} and Danis, Bruno and Navarro, Nicolas and Koubbi, Philippe and Laffont, R{\'e}mi and Sauc{\`e}de, Thomas}
}
@article {7047,
	title = {Biodiversity inventory of the grey mullets (Actinopterygii: Mugilidae) of the Indo-Australian Archipelago through the iterative use of DNA-based species delimitation and specimen assignment methods},
	journal = {Evolutionary Applications},
	year = {2020},
	month = {Nov-02-2020},
	abstract = {DNA barcoding opens new perspectives on the way we document biodiversity. Initially proposed to circumvent the limits of morphological characters to assign unknown individuals to known species, DNA barcoding has been used in a wide array of studies where collecting species identity constitutes a crucial step. The assignment of unknowns to knowns assumes that species are already well identified and delineated, making the assignment performed reliable. Here, we used DNA-based species delimitation and specimen assignment methods iteratively to tackle the inventory of the Indo-Australian Archipelago grey mullets, a notorious case of taxonomic complexity that requires DNA-based identification methods considering that traditional morphological identifications are usually not repeatable and sequence mislabeling is common in international sequence repositories. We first revisited a DNA barcode reference library available at the global scale for Mugilidae through different DNA-based species delimitation methods to produce a robust consensus scheme of species delineation. We then used this curated library to assign unknown specimens collected throughout the Indo-Australian Archipelago to known species. A second iteration of OTU delimitation and specimen assignment was then performed. We show the benefits of using species delimitation and specimen assignment methods iteratively to improve the accuracy of specimen identification and propose a workflow to do so.},
	keywords = {Coral Triangle, Cryptic diversity, DNA barcoding, reference library, taxonomic gap},
	issn = {1752-4571},
	doi = {10.1111/eva.12926},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/eva.12926},
	author = {Delrieu-Trottin, Erwan and Durand, Jean-Dominique and Limmon, Gino and Sukmono, Tedjo and Kadarusman and Sugeha, Hagi Yulia and Chen, Wei-Jen and Busson, Frederic and Borsa, Philippe and Dahruddin, Hadi and Sauri, Sopian and Fitriana, Yuli and Zein, Mochamad Syamsul Arifin and Hocd{\'e}, R{\'e}gis and Pouyaud, Laurent and Philippe Keith and Wowor, Daisy and Steinke, Dirk and Hanner, Robert and Hubert, Nicolas}
}
@article {7203,
	title = {Carbon dioxide sources and sinks in the delta of the Para{\'\i}ba do Sul River (Southeastern Brazil) modulated by carbonate thermodynamics, gas exchange and ecosystem metabolism during estuarine mixing},
	journal = {Marine Chemistry},
	volume = {226},
	year = {2020},
	month = {Jan-10-2020},
	pages = {103869},
	issn = {03044203},
	doi = {10.1016/j.marchem.2020.103869},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0304420320301237},
	author = {Cotovicz, Luiz C. and Vidal, Luciana O. and de Rezende, Carlos Eduardo and Bernardes, Marcelo C. and Knoppers, Bastiaan A. and Sobrinho, Rodrigo L. and Cardoso, Renan P. and Muniz, Marcelo and dos Anjos, Roberto Meigikos and Biehler, Antoine and Gwena{\"e}l Abril}
}
@article {8986,
	title = {Comparison of embryonic and adult shells of Sepia officinalis (Cephalopoda, Mollusca)},
	journal = {Zoomorphology},
	volume = {139},
	year = {2020},
	pages = {151-169},
	doi = {10.1007/s00435-020-00477-2},
	url = {https://hal.archives-ouvertes.fr/hal-02557254},
	author = {Dauphin, Yannicke and Luquet, Gilles and Percot, Aline and Laure Bonnaud-Ponticelli}
}
@article {8394,
	title = {The complete mitochondrial genome of Thymallus thymallus (Linnaeus, 1758) (Actinopterygii, Salmonidae) obtained by long range PCRs and double multiplexing},
	journal = {Cybium},
	volume = {44},
	year = {2020},
	pages = {91-94},
	abstract = {Le g{\'e}nome mitochondrial complet de Thymallus thymallus (Actinopterygii, Salmonidae) provenant d{\textquoteright}un voucher enregistr{\'e} en collection et captur{\'e} dans l{\textquoteright}Ain (bassin du Rh{\^o}ne) a {\'e}t{\'e} s{\'e}quenc{\'e}. La s{\'e}quence d{\textquoteright}une longueur de 16 660 pb, contient 13 g{\`e}nes codants, 22 ARN de transfert dont 2 ARNt-Leu et 2 ARNt-Ser, 2 g{\`e}nes ARN ribosomiques et la r{\'e}gion de contr{\^o}le. Un espace interg{\'e}nique et des s{\'e}quences se chevauchant ont {\'e}t{\'e} trouv{\'e}s. La composition des bases du mitog{\'e}nome est de 27,5\% A, 27,9\% T, 27,1\% C et 17,5\% G. Ce mitog{\'e}nome a {\'e}t{\'e} s{\'e}quenc{\'e} pour moins de 20 euros.},
	author = {Denys, Ga{\"e}l and Secci-Petretto, Giulia and Gomes-Dos-Santos, Andr{\'e}}
}
@article {6866,
	title = {A current synthesis on the effects of electric and magnetic fields emitted by submarine power cables on invertebrates},
	journal = {Marine Environmental Research},
	volume = {159},
	year = {2020},
	pages = {104958},
	abstract = {The goal of clean renewable energy production has promoted the large-scale deployment of marine renewable energy devices, and their associated submarine cable network. Power cables produce both electric and magnetic fields that raise environmental concerns as many marine organisms have magneto and electroreception abilities used for vital purposes. Magnetic and electric fields{\quotesinglbase}{\"A}{\^o} intensities decrease with distance away from the cable. Accordingly, the benthic and the sedimentary compartments are exposed to the highest field values. Although marine invertebrate species are the major fauna of these potentially exposed areas, they have so far received little attention. We provide extensive background knowledge on natural and anthropogenic marine sources of magnetic and electric fields. We then compile evidence for magneto- and electro-sensitivity in marine invertebrates and further highlight what is currently known about their interactions with artificial sources of magnetic and electric fields. Finally we discuss the main gaps and future challenges that require further investigation.},
	issn = {0141-1136},
	doi = {https://doi.org/10.1016/j.marenvres.2020.104958},
	url = {http://www.sciencedirect.com/science/article/pii/S0141113619307706},
	author = {Luana Albert and Fran{\c c}ois Deschamps and Aur{\'e}lie Jolivet and Fr{\'e}d{\'e}ric Olivier and Laurent Chauvaud and Sylvain Chauvaud}
}
@article {7164,
	title = {Deciphering mollusc shell production: the roles of genetic mechanisms through to ecology, aquaculture and biomimetics.},
	journal = {Biol Rev Camb Philos Soc},
	year = {2020},
	month = {2020 Jul 31},
	abstract = {<p>Most molluscs possess shells, constructed from a vast array of microstructures and architectures. The fully formed shell is composed of calcite or aragonite. These CaCO crystals form complex biocomposites with proteins, which although typically less than 5\% of total shell mass, play significant roles in determining shell microstructure. Despite much research effort, large knowledge gaps remain in how molluscs construct and maintain their shells, and how they produce such a great diversity of forms. Here we synthesize results on how shell shape, microstructure, composition and organic content vary among, and within, species in response to numerous biotic and abiotic factors. At the local level, temperature, food supply and predation cues significantly affect shell morphology, whilst salinity has a much stronger influence across latitudes. Moreover, we emphasize how advances in genomic technologies [e.g. restriction site-associated DNA sequencing (RAD-Seq) and epigenetics] allow detailed examinations of whether morphological changes result from phenotypic plasticity or genetic adaptation, or a combination of these. RAD-Seq has already identified single nucleotide polymorphisms associated with temperature and aquaculture practices, whilst epigenetic processes have been shown significantly to modify shell construction to local conditions in, for example, Antarctica and New Zealand. We also synthesize results on the costs of shell construction and explore how these affect energetic trade-offs in animal metabolism. The cellular costs are still debated, with CaCO precipitation estimates ranging from 1-2 J/mg to 17-55 J/mg depending on experimental and environmental conditions. However, organic components are more expensive (~29 J/mg) and recent data indicate transmembrane calcium ion transporters can involve considerable costs. This review emphasizes the role that molecular analyses have played in demonstrating multiple evolutionary origins of biomineralization genes. Although these are characterized by lineage-specific proteins and unique combinations of co-opted genes, a small set of protein domains have been identified as a conserved biomineralization tool box. We further highlight the use of sequence data sets in providing candidate genes for in situ localization and protein function studies. The former has elucidated gene expression modularity in mantle tissue, improving understanding of the diversity of shell morphology synthesis. RNA interference (RNAi) and clustered regularly interspersed short palindromic repeats - CRISPR-associated protein 9 (CRISPR-Cas9) experiments have provided proof of concept for use in the functional investigation of mollusc gene sequences, showing for example that Pif (aragonite-binding) protein plays a significant role in structured nacre crystal growth and that the Lsdia1 gene sets shell chirality in Lymnaea stagnalis. Much research has focused on the impacts of ocean acidification on molluscs. Initial studies were predominantly pessimistic for future molluscan biodiversity. However, more sophisticated experiments incorporating selective breeding and multiple generations are identifying subtle effects and that variability within mollusc genomes has potential for adaption to future conditions. Furthermore, we highlight recent historical studies based on museum collections that demonstrate a greater resilience of molluscs to climate change compared with experimental data. The future of mollusc research lies not solely with ecological investigations into biodiversity, and this review synthesizes knowledge across disciplines to understand biomineralization. It spans research ranging from evolution and development, through predictions of biodiversity prospects and future-proofing of aquaculture to identifying new biomimetic opportunities and societal benefits from recycling shell products.</p>
},
	issn = {1469-185X},
	doi = {10.1111/brv.12640},
	author = {Clark, Melody S and Peck, Lloyd S and Arivalagan, Jaison and Backeljau, Thierry and Berland, Sophie and Cardoso, Joao C R and Caurcel, Carlos and Chapelle, Gauthier and De Noia, Michele and Dupont, Sam and Gharbi, Karim and Hoffman, Joseph I and Last, Kim S and Marie, Arul and Melzner, Frank and Michalek, Kati and Morris, James and Power, Deborah M and Ramesh, Kirti and Sanders, Trystan and Sillanp{\"a}{\"a}, Kirsikka and Sleight, Victoria A and Stewart-Sinclair, Phoebe J and Sundell, Kristina and Telesca, Luca and Vendrami, David L J and Ventura, Alexander and Wilding, Thomas A and Yarra, Tejaswi and Harper, Elizabeth M}
}
@article {8124,
	title = {Deciphering shell proteome within different Baltic populations of mytilid mussels illustrates important local variability and potential consequences in the context of changing marine conditions},
	journal = {Science of The Total Environment},
	volume = {745},
	year = {2020},
	month = {Jan-11-2020},
	pages = {140878},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2020.140878},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969720344077},
	author = {Arivalagan, Jaison and Marie, Benjamin and Chiappetta, Giovanni and Vinh, Jo{\"e}lle and Gallet, Xavier and Lebon, Matthieu and M{\textquoteright}Zoudi, Saloua and Dubois, Philippe and Berland, Sophie and Marie, Arul}
}
@article {7116,
	title = {Development of an accurate model to predict the phenology of Atlantic salmon smolt spring migration},
	journal = {Aquatic Conservation: Marine and Freshwater Ecosystems},
	year = {2020},
	month = {Apr-07-2021},
	abstract = {Changes in migration timing, resulting from the alteration in river continuity or the effect of climate change, can have major consequences on the population dynamics of diadromous fish. Forecasting the phenology of fish migration is thus critically important to implement management actions aimed at protecting fish during their migration.<br>
In this study, an 11-year monitoring survey of Atlantic salmon smolts (Salmo salar\&nbsp;) from the Ourthe River, Belgium, was analysed within a European Special Area of Conservation to improve the understanding of environment-induced spring migration. A logistic model was fitted to forecast smolt migration and to calculate phenological indicators for management, i.e. the onset, end, and duration of migration, while accounting for the influence of photoperiod, water temperature, and hydrological conditions.<br>
The results indicated that the photo-thermal units accumulated by smolts above a 7{\textdegree}C temperature threshold was a relevant proxy to reflect the synergistic effect between temperature and photoperiod on smolt migration. After integrating the effect of river flow pulses, the model accurately explained the inter-annual changes in migration timing (R2\&nbsp;= 0.95). The model predictions provide decisive management information to identify sensitive periods during which mitigation measures (e.g. hydropower turbine shutdown, river discharge management) should be conducted to promote smolt survival.<br>
The model was used to predict phenological characteristics under future scenarios of climate change. The results suggest a joint effect of hydrological alterations and water warming. Temperature increases of 1{\textendash}4{\textdegree}C were associated with earlier initiation of migration, 6{\textendash}51 days earlier, and spring flood events greatly influenced the duration of the migration period. Accordingly, the combined effects of human-induced modifications of the hydrological regimes and increasing temperatures could result in a mismatch between the smolt and favourable survival conditions in the marine environment.},
	issn = {1052-7613},
	doi = {10.1002/aqc.3382},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/aqc.3382},
	author = {Teichert, Nils and Benitez, Jean-Philippe and Dierckx, Arnaud and T{\'e}tard, St{\'e}phane and Oliveira, Eric and Thomas Trancart and Eric Feunteun and Ovidio, Micha{\"e}l}
}
@article {8080,
	title = {Differential Regulation of the Expression of the Two Thyrotropin Beta Subunit Paralogs by Salmon Pituitary Cells In Vitro},
	journal = {Frontiers in Endocrinology},
	volume = {11},
	year = {2020},
	month = {Mar-11-2022},
	doi = {10.3389/fendo.2020.603538},
	url = {https://www.frontiersin.org/articles/10.3389/fendo.2020.603538/full},
	author = {Fleming, Mitchell Stewart and Maugars, Gersende and Martin, Patrick and Sylvie Dufour and Rousseau, Karine}
}
@article {7046,
	title = {Disentangling the taxonomy of the subfamily Rasborinae (Cypriniformes, Danionidae) in Sundaland using DNA barcodes},
	journal = {Scientific Reports},
	volume = {10},
	year = {2020},
	month = {Jan-12-2020},
	abstract = {iodiversity hotspots have provided useful geographic proxies for conservation efforts. Delineated from a few groups of animals and plants, biodiversity hotspots do not reflect the conservation status of freshwater fishes. With hundreds of new species described on a yearly basis, fishes constitute the most poorly known group of vertebrates. This situation urges for an acceleration of the fish species inventory through fast and reliable molecular tools such as DNA barcoding. The present study focuses on the freshwater fishes diversity in the Sundaland biodiversity hotspot in Southeast Asia. Recent studies evidenced large taxonomic gaps as well as unexpectedly high levels of cryptic diversity, particularly so in the islands of Java and Bali. The Cypriniformes genera Rasbora and Nemacheilus account for most of the endemic species in Java and Bali, however their taxonomy is plagued by confusion about species identity and distribution. This study examines the taxonomic status of the Rasbora and Nemacheilus species in Java, Bali and Lombok islands through DNA barcodes, with the objective to resolve taxonomic confusion and identify trends in genetic diversity that can be further used for conservation matters. Several species delimitation methods based on DNA sequences were used and confirmed the status of most species, however several cases of taxonomic confusion and two new taxa are detected. Mitochondrial sequences argue that most species range distributions currently reported in the literature are inflated due to erroneous population assignments to the species level, and further highlight the sensitive conservation status of most Rasbora and Nemacheilus species on the islands of Java, Bali and Lombok.},
	keywords = {Conservation genetics, Cryptic diversity, Population fragmentation, Southeast Asia, taxonomy},
	doi = {10.1038/s41598-020-59544-9},
	url = {http://www.nature.com/articles/s41598-020-59544-9},
	author = {Sholihah, Arni and Delrieu-Trottin, Erwan and Sukmono, Tedjo and Dahruddin, Hadi and Risdawati, Renny and Elvyra, Roza and Wibowo, Arif and Kustiati, Kustiati and Busson, Frederic and Sauri, Sopian and Nurhaman, Ujang and Dounias, Edmond and Zein, Muhamad Syamsul Arifin and Fitriana, Yuli and Utama, Ilham Vemendra and Muchlisin, Zainal Abidin and Agn{\`e}se, Jean-Fran{\c c}ois and Hanner, Robert and Wowor, Daisy and Steinke, Dirk and Philippe Keith and R{\"u}ber, Lukas and Hubert, Nicolas}
}
@article {7376,
	title = {Does parasitism influence sediment stability? Evaluation of trait-mediated effects of the trematode Bucephalus minimus on the key role of cockles Cerastoderma edule in sediment erosion dynamics},
	journal = {Science of The Total Environment},
	volume = {733},
	year = {2020},
	month = {Jan-09-2020},
	pages = {139307},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2020.139307},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969720328242},
	author = {Dairain, Annabelle and Maire, Olivier and Meynard, Guillaume and Francis Orvain}
}
@article {6910,
	title = {Effect of Light Intensity and Light Quality on Diatom Behavioral and Physiological Photoprotection},
	journal = {Frontiers in Marine Science},
	volume = {7},
	year = {2020},
	pages = {203},
	abstract = {In this study, we investigated the different photoregulation responses of diatom dominated natural biofilms to different light intensities and wavelengths, over a tidal cycle in the laboratory. We compared the overall effect of light spectral quality from its light absorption (Qphar) dependent effect. Two different conditions were compared to study photoprotective strategies: sediment (migrational) and without sediment (non-migrational). Three different colors (blue, green, and red) and two light intensities (low light, LL at 210 μmol.photons.m<sup>{\textendash}2</sup>.s<sup>{\textendash}1</sup> and high light, HL at 800 μmol.photons.m<sup>{\textendash}2</sup>.s<sup>{\textendash}1</sup>) showed strong interactions in inducing behavioral and physiological photoprotection. Non-migrational biofilm non-photochemical quenching (NPQ) was much more reactive to blue HL than red HL while it did not differ in LL. We observed a biphasic NPQ response with a light threshold between 200 and 250 μmol.photons.m<sup>{\textendash}2</sup>.s<sup>{\textendash}1</sup> of Qphar that elicited the onset of physiological photoprotection. Similar HL differences were not observed in migrational biofilms due to active vertical migration movements that compensated light saturating effects. Our results showed that within migrational biofilms there was an interaction between light quality and light intensity on cell accumulation pattern at the sediment surface. This interaction led to inverse diatom accumulation patterns between blue and red light at the same intensity: LL (blue + 200.67\%, red + 123.96\%), HL (blue + 109.15\%, red + 150.34\%). These differences were largely related to the differential amount of light absorbed at different wavelengths and highlighted the importance of using wavelength standardized intensities. Different vertical migration patterns significantly affected the total pigment content measured at the surface, suggesting that cell could migrate downward more than 2 mm as a photoregulatory response. Colloidal carbohydrates patterns paralleled the vertical migration movements, highlighting their possible role in diatom motility. Our data strongly suggests a wavelength and Qphar dependent light stress threshold that triggers upward and downward movements to position microphytobenthic diatoms at their optimal depth.},
	issn = {2296-7745},
	doi = {10.3389/fmars.2020.00203},
	url = {https://www.frontiersin.org/article/10.3389/fmars.2020.00203},
	author = {Prins, Antoine and Deleris, Paul and C{\'e}dric Hubas and Bruno Jesus}
}
@article {8081,
	title = {Elevated estradiol-17β levels inhibit final oocyte maturation via G protein-coupled estrogen receptor (Gper) in yellowfin porgy, Acanthopagrus latus},
	journal = {General and Comparative Endocrinology},
	volume = {299},
	year = {2020},
	month = {Jan-12-2020},
	pages = {113587},
	issn = {00166480},
	doi = {10.1016/j.ygcen.2020.113587},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016648020303403},
	author = {Jeng, Shan-Ru and Thomas, Peter and Pang, Yefei and Sylvie Dufour and Lin, Chien-Ju and Yueh, Wen-Shiun and Chang, Ching-Fong}
}
@inbook {7274,
	title = {Endocrinology: An evolutionary perspective on neuroendocrine axes in teleosts},
	booktitle = {The Physiology of Fishes, Fifth Edition},
	year = {2020},
	pages = {105-116},
	publisher = {CRC Press, Taylor \& Francis Group},
	organization = {CRC Press, Taylor \& Francis Group},
	edition = {Suzanne Curie and David H. Evans, Editors},
	chapter = {8},
	address = {Boca Raton,FL},
	issn = {9781003036401},
	doi = {10.1201/9781003036401 },
	author = {Sylvie Dufour and Karine Rousseau}
}
@article {7323,
	title = {Fatty acid compositions of four benthic species along the salinity gradient of a human impacted and mangrove dominated tropical estuary (Can Gio, Vietnam)},
	journal = {Journal of Sea Research},
	year = {2020},
	month = {Jan-09-2020},
	pages = {101955},
	abstract = {Tropical estuaries are characterised by high spatial and temporal variability in the conditions they provide for living organisms, which in turn may affect their biochemical composition. Anthropogenic contaminants such as nutrients, antibiotics, pesticides and trace metals may also affect the biochemical composition of these coastal organisms, notably with regard to fatty acids (FA), of which optimal species-specific polyunsaturated FA ratios are required to maintain living species in healthy conditions. The objective of this study was to evidence changes in the FA profile of four ubiquist benthic species in relation to the salinity gradient of a human impacted and mangrove dominated tropical estuary (Can Gio, Southern Vietnam). Among the four benthic species studied, two exhibited spatial and seasonal changes in their FA composition: the varunid crab\&nbsp;Metaplax elegans\&nbsp;and the predatory mangrove murex snail\&nbsp;Chicoreus capucinus. Proportions of the FA 16:1ω7, proportions of highly unsaturated FA and ratios of eicosapentanoic acid/arachidonic acid in the tissues of both species seemed related to upstream inputs. Different relative abundances of benthic microalgae affected both claw muscle and hepatopancreas FA composition of\&nbsp;M. elegans, while the FA composition of\&nbsp;C. capucinus\&nbsp;shows that the influence of prey{\textquoteright}s diet might be transferred within trophic chains. Finally, some species, such as\&nbsp;Nerita balteata\&nbsp;and\&nbsp;Metapenaeus ensis\&nbsp;might have more adaptive capacities, because of their mobility, or because of their specific metabolic pathways, minimizing the potential impact of spatial and/or temporal changes in food resources quality. A starvation experiment involving\&nbsp;N. balteata\&nbsp;actually revealed the metabolic synthesis of non-methylene interrupted FA that may confer cell membranes a higher resistance to external stressors than common polyunsaturated FA. Our study highlights the future possibility of using the FA composition of sentinel organisms (i.e. feeding on specific food resources and/or especially subject to environmental stresses) as a bioindicator tool to assess mangrove ecosystems health.},
	issn = {13851101},
	doi = {10.1016/j.seares.2020.101955},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1385110120301556},
	author = {Frank David and Marchand, Cyril and Van, Vinh Truong and Taillardat, Pierre and Thanh-Nho, Nguyen and Tarik Meziane}
}
@article {8952,
	title = {First Occurrence of the Genus Australatya (Crustacea: Decapoda: Atyidae) in Melanesia and Polynesia with Description of a New Species},
	journal = {Pacific Science},
	volume = {74},
	year = {2020},
	pages = {297-308},
	abstract = {During specific inventories led by the Mus{\'e}um national d{\textquoteright}Histoire naturelle (MNHN, Paris), numerous specimens of Atyidae, particulary of Atya-like shrimps were collected in Melanesia (Vanuatu, Solomon Islands) and in Polynesia (Futuna, Samoa). These specimens were morphologically and genetically examined. Our study revealed that some specimens belonged to a new species in the genus AustralatyaChace, 1983. The aim of this paper is to describe this new species, Australatya keithi sp. nov., and discuss the distribution of its genus in the studied area.},
	doi = {10.2984/74.3.7},
	url = {https://bioone.org/journals/pacific-science/volume-74/issue-3/74.3.7/First-Occurrence-of-the-Genus-Australatya-Crustacea--Decapoda/10.2984/74.3.7.full},
	author = {Lorang, Camille and Marquet, G{\'e}rard and de Mazancourt, Valentin}
}
@article {7185,
	title = {Food sources, digestive efficiency and resource allocation in the sea cucumber Holothuria forskali (Echinodermata: Holothuroidea): Insights from pigments and fatty acids},
	journal = {Aquaculture Nutrition},
	volume = {26},
	year = {2020},
	month = {Apr-08-2022},
	pages = {1568-1583},
	abstract = {Various research projects in Europe and North Africa have recently intended to breed temperate holothurians to alleviate fishing pressure on natural populations. However, to date little is known about the nutritional requirements of East Atlantic and Mediterranean species. In this study, we propose a {\textquotedblleft}natural population{\textquotedblright}-oriented approach to characterize food sources, digestive efficiency and resources allocation based on the composition of pigments and fatty acids (FA) in gut contents and tis- sues (muscles, gonads and digestive tract walls) of wild individuals of the species Holothuria (Panningothuria) forskali (Delle Chiaje, 1823) sampled in Brittany (France). Our study reveals that neither green nor red algae enter the diet of H. forskali in spring and that the only fresh vegetal material found in gut contents is brown algae (very likely diatoms). The high nutritional quality of gut contents however contrasts with the detrital nature of the ingested food sources, suggesting that a trophic up- grading of organic matter occurs before digestion. In addition, unusual FA (i.e. only present in a few groups of living species) such as long-chain monounsaturated FA (especially the FA 23:1ω9) were found in large proportions in muscles and gonad and their effect on sea cucumber fitness needs further investigation.},
	keywords = {echinoderms, fatty acids, gut contents, Holothuria forskali, pigments, sea cucumbers},
	issn = {1353-5773},
	doi = {10.1111/anu.13103},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/anu.13103},
	author = {Frank David and C{\'e}dric Hubas and Laguerre, Hel{\`e}ne and Badou, Aicha and Herault, Gwen and Bordelet, Th{\'e}o and Ameziane, Nadia}
}
@article {8125,
	title = {Freshwater gobies 30 million years ago: New insights into character evolution and phylogenetic relationships of {\textdagger}Pirskeniidae (Gobioidei, Teleostei)},
	journal = {PLOS ONE},
	volume = {15},
	year = {2020},
	month = {Dec-08-2021},
	pages = {e0237366},
	doi = {10.1371/journal.pone.0237366},
	url = {https://dx.plos.org/10.1371/journal.pone.0237366},
	author = {Reichenbacher, Bettina and P{\v r}ikryl, Tom{\'a}{\v s} and Cerwenka, Alexander F. and Philippe Keith and Gierl, Christoph and Dohrmann, Martin},
	editor = {Carnevale, Giorgio}
}
@article {7385,
	title = {Functional diversity of microboring Ostreobium algae isolated from corals},
	journal = {Environmental Microbiology},
	year = {2020},
	month = {Dec-10-2020},
	abstract = {The filamentous chlorophyte\&nbsp;Ostreobium\&nbsp;sp. dominates shallow marine carbonate microboring communities, and is one of the major agents of reef bioerosion. While its large genetic diversity has emerged, its physiology remains little known, with unexplored relationship between genotypes and phenotypes (endolithic\&nbsp;versus\&nbsp;free-living growth forms). Here, we isolated nine strains affiliated to two lineages of\&nbsp;Ostreobium\&nbsp;(\&gt;8\% sequence divergence of the plastid gene\&nbsp;rbcL), one of which was assigned to the family Odoaceae, from the fast-growing coral host\&nbsp;Pocillopora acuta\&nbsp;Lamarck 1816. Free-living isolates maintained their bioerosive potential, colonizing pre-bleached coral carbonate skeletons. We compared phenotypes, highlighting shifts in pigment and fatty acid compositions, carbon to nitrogen ratios and stable isotope compositions (δ13C and δ15N). Our data show a pattern of higher chlorophyll\&nbsp;b\&nbsp;and lower arachidonic acid (20:4ω6) content in endolithic\&nbsp;versus\&nbsp;free-living\&nbsp;Ostreobium. Photosynthetic carbon fixation and nitrate uptake, quantified via 8 h pulse-labeling with\&nbsp;13C-bicarbonate and\&nbsp;15N-nitrate, showed lower isotopic enrichment in endolithic compared to free-living filaments. Our results highlight the functional plasticity of\&nbsp;Ostreobium\&nbsp;phenotypes. The isotope tracer approach opens the way to further study the biogeochemical cycling and trophic ecology of these cryptic algae at coral holobiont and reef scales.},
	issn = {1462-2912},
	doi = {10.1111/1462-2920.15256},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/1462-2920.15256},
	author = {Mass{\'e}, Ana{\"\i}s and Tribollet, Aline and Tarik Meziane and Bourguet-Kondracki, Marie-Lise and Y{\'e}pr{\'e}mian, Claude and S{\`e}ve, Charlotte and Thiney, Najet and Longeon, Arlette and Cout{\'e}, Alain and Domart-Coulon, Isabelle}
}
@article {8285,
	title = {Giuris (Teleostei: Eleotridae) from Indonesia, with description of a new species},
	journal = {Cybium},
	volume = {44},
	year = {2020},
	pages = {331-349},
	author = {Philippe Keith and Marion Mennesson and Sauri, S and Fr{\'e}d{\'e}ric Busson and Delrieu-Trottin, Erwan and Limmon, G and Sukomono, T and Jiran and Risdawati, Renny and Dahruddin, Hadi and Hubert, Nicolas}
}
@article {7134,
	title = {Gonadotropin-inhibitory hormone in teleosts: New insights from a basal representative, the eel},
	journal = {General and Comparative Endocrinology},
	volume = {287},
	year = {2020},
	month = {Jan-02-2020},
	pages = {113350},
	issn = {00166480},
	doi = {10.1016/j.ygcen.2019.113350},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016648019303296},
	author = {Maugars, G. and Pasquier, J. and Atkinson, C. and Lafont, A.-G. and Campo, A. and Kamech, Nedia and Lefranc, B. and Leprince, J. and Sylvie Dufour and Rousseau, K.}
}
@article {7886,
	title = {Hi{\'e}rarchisation de la valeur de pr{\'e}servation des oiseaux nicheurs {\`a} enjeux : application d{\textquoteright}un indice int{\'e}grateur pour le d{\'e}partement d{\textquoteright}Ille-et-Vilaine},
	journal = {Naturae},
	year = {2020},
	month = {Jun-11-2021},
	doi = {10.5852/naturae2020a13},
	url = {http://sciencepress.mnhn.fr/fr/periodiques/naturae/2020/13},
	author = {Fr{\'e}d{\'e}ric Ysnel and Morel, Lo{\"\i}s and DEVOGEL, Pierre and ALTHERR, Thomas and Dugravot, S{\'e}bastien and MOREL, R{\'e}gis and LEBAS, Jean-Fran{\c c}ois}
}
@article {7469,
	title = {Highly variable taxa-specific coral bleaching responses to thermal stresses},
	journal = {Marine Ecology Progress Series},
	volume = {648},
	year = {2020},
	month = {27-08-2020},
	pages = {135 - 151},
	abstract = {Complex histories of chronic and acute sea surface temperature (SST) stresses are expected to trigger taxon- and location-specific responses that will ultimately lead to novel coral communities. The 2016 El Ni{\~n}o-Southern Oscillation provided an opportunity to examine largescale and recent environmental histories on emerging patterns in 226 coral communities distributed across 12 countries from East Africa to Fiji. Six main coral communities were identified that largely varied across a gradient of Acropora to massive Porites dominance. Bleaching intensity was taxon-specific and was associated with complex interactions among the 20 environmental variables that we examined. Coral community structure was better aligned with the historical temperature patterns between 1985 and 2015 than the 2016 extreme temperature event. Additionally, bleaching responses observed during 2016 differed from historical reports during past warm years. Consequently, coral communities present in 2016 are likely to have been reorganized by both long-term community change and acclimation mechanisms. For example, less disturbed sites with cooler baseline temperatures, higher mean historical SST background variability, and infrequent extreme warm temperature stresses were associated with Acropora-dominated communities, while more disturbed sites with lower historical SST background variability and frequent acute warm stress were dominated by stress-resistant massive Porites corals. Overall, the combination of taxon-specific responses, community-level reorganization over time, geographic variation, and multiple environmental stressors suggest complex responses and a diversity of future coral communities that can help contextualize management priorities and activities.},
	keywords = {acclimation, Adaptation, Climate Change, community structure, Geography, Stress responses},
	issn = {0171-8630},
	doi = {10.3354/meps13402},
	url = {https://www.int-res.com/abstracts/meps/v648/p135-151/},
	author = {McClanahan, T.R. and Darling, E.S. and Maina, J.M. and Muthiga, NA and D{\textquoteright}agata, S. and Leblond, J. and Arthur, R. and Jupiter, S.D. and Wilson, S.K. and Mangubhai, S. and Ussi, A.M. and Mireille M.M. Guillaume and Humphries, A.T. and Patankar, V. and Shedrawi, G. and Pagu, J. and Grimsditch, G.}
}
@article {7089,
	title = {How to model social-ecological systems? {\textendash} A case study on the effects of a future offshore wind farm on the local society and ecosystem, and whether social compensation matters},
	journal = {Marine Policy},
	volume = {119},
	year = {2020},
	abstract = {Models of social-ecological systems (SES) are acknowledged as an important tool to understand human-nature relations. However, many SES models fail to integrate adequate information from both the human and ecological subsystems. With an example model of a future Offshore Wind Farm development and its effects on both the ecosystem and local human population, we illustrate a method facilitating a {\textquotedblleft}balanced{\textquotedblright} SES model, in terms of including information from both subsystems. We use qualitative mathematical modeling, which allows to quickly analyze the structure and dynamics of a system without including quantitative data, and therefore to compare alternative system structures based on different understandings of how the system works. By including similar number of system variables in the two subsystems, we balanced the complexity between them. Our analyses show that this complexity is important in order to predict indirect and sometimes counterintuitive effects. We also highlight some conceptually important questions concerning social compensations during developmental projects in general, and wind farms in particular. Our results suggest that the more project holders get involved in various manner in the local socio-ecological system, the more society will benefit as a whole. Increased involvement through e.g. new projects or job-opportunities around the windfarm has the capacity to offset the negative effects of the windfarm on the local community. These benefits are enhanced when there is an overall acceptance and appropriation of the project. We suggest this method as a tool to support the decision-making process and to facilitate discussions between stakeholders, especially among local communities. {\textcopyright} The Authors},
	keywords = {Acceptance, comparative study, Complexity, Decision making, development project, Eastern English channel, environmental impact assessment, future prospect, local participation, Network, numerical model, offshore structure, participatory approach, Perception, Qualitative modeling, quantitative analysis, Renewable energy, social impact assessment, stakeholder, wind farm},
	issn = {0308597X (ISSN)},
	doi = {10.1016/j.marpol.2020.104031},
	url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85085318224\&doi=10.1016\%2fj.marpol.2020.104031\&partnerID=40\&md5=9e69340af6d591878af0f943cd4bc347},
	author = {Haraldsson, M. and Raoux, A. and Riera, F. and Hay, J. and Dambacher, J.M. and Nathalie Niquil}
}
@article {7131,
	title = {Identification and stable expression of vitellogenin receptor through vitellogenesis in the European eel},
	journal = {animal},
	volume = {14},
	year = {2020},
	month = {Jan-06-2020},
	pages = {1213 - 1222},
	issn = {1751-7311},
	doi = {10.1017/S1751731119003355},
	url = {https://www.cambridge.org/core/product/identifier/S1751731119003355/type/journal_article},
	author = {Morini, M. and Lafont, A. G. and Maugars, G. and Baloche, S. and Sylvie Dufour and Asturiano, J. F. and P{\'e}rez, L.}
}
@article {7035,
	title = {Identification and structural characterization of the factors involved in vitellogenesis and its regulation in the African Osteoglossiforme of aquacultural interest Heterotis niloticus (Cuvier, 1829)},
	journal = {General and Comparative Endocrinology},
	year = {2020},
	month = {Jan-06-2020},
	pages = {113532},
	issn = {00166480},
	doi = {10.1016/j.ygcen.2020.113532},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016648020302859},
	author = {Daniel Koua, N{\textquoteright}Zi and Jesus Nu{\~n}ez-Rodriguez and Orjuela, Julie and C{\'e}line Zatylny-Gaudin and Dubos, Marie-Pierre and Bernay, Beno{\^\i}t and Pontin, Julien and Corre, Erwan and Henry, Jo{\"e}l}
}
@article {8721,
	title = {In vitro effects of glyphosate-based herbicides and related adjuvants on primary culture of hemocytes from Haliotis tuberculata},
	journal = {Fish \& Shellfish Immunology},
	volume = {100},
	year = {2020},
	month = {Jan-05-2020},
	pages = {1 - 8},
	issn = {10504648},
	doi = {10.1016/j.fsi.2020.02.058},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1050464820301455},
	author = {Mottier, Antoine and Serpentini, Antoine and Dallas, Lorna and James, Ad{\`e}le and Lebel, Jean-Marc and Katherine Costil}
}
@article {6631,
	title = {In vitro effects of glyphosate-based herbicides and related adjuvants on primary culture of hemocytes from Haliotis tuberculata},
	journal = {Fish and Shellfish Immunology},
	year = {2020},
	abstract = {Glyphosate-based herbicides are among the most produced and widely-used herbicides.\&nbsp;Studies have shown that commercial formulations and adjuvants may be more toxic to non-target organisms than the active ingredients alone, but the mechanisms of action of these\&nbsp;chemicals remain unclear. The aim of this study was to investigate the in vitro effects of\&nbsp;glyphosate, a commercial formulation and adjuvant alone using primary culture of hemocytes\&nbsp;from the European abalone <em>Haliotis tuberculata</em>, a commonly farmed shellfish. Glyphosate\&nbsp;was found to have negligible effects on viability, phagocytic activities and lysosome stability\&nbsp;even with very high doses (i.e. 100 mg L<sup>-1</sup>). By contrast, greater effects on viability were\&nbsp;observed for the commercial formulation and adjuvant alone, with EC<sub>50</sub> values of 41.42 mg L<sup>-1</sup> and 1.85 mg L<sup>-1</sup>, respectively. These results demonstrate that the toxic sublethal effects (i.e.\&nbsp;phagocytic activity and destabilization of lysosomal membranes) of formulated glyphosate<br>
came from adjuvants and suggest they may be related to cell and organelle membrane\&nbsp;destabilization.},
	keywords = {glyphosate, Haliotis tuberculata, Hemocytes, neutral red retention assay, Phagocytosis, POEAs, viability assay},
	doi = {10.1016/j.fsi.2020.02.058},
	url = {https://doi.org/10.1016/j.fsi.2020.02.058},
	author = {Mottier, Antoine and Antoine Serpentini and Dallas, Lorna and James, Ad{\`e}le and Lebel, Jean-Marc and Katherine Costil}
}
@article {6916,
	title = {An integrated investigation of the effects of ocean acidification on adult abalone (Haliotis tuberculata)},
	journal = {ICES Journal of Marine Science},
	volume = {77},
	year = {2020},
	month = {Sep-01-2020},
	pages = {757 - 772},
	type = {research article},
	abstract = {Ocean acidification (OA) and its subsequent changes in seawater carbonate chemistry are threatening the survival of calcifying organisms.Due to their use of calcium carbonate to build their shells, marine molluscs are particularly vulnerable. This study investigated the effect of CO2-induced OA on adult European abalone (Haliotis tuberculata) using a multi-parameter approach. Biological (survival, growth), physiological (pHT of haemolymph, phagocytosis, metabolism, gene expression), and structural responses (shell strength, nano-indentation measurements,Scanning electron microscopy imaging of microstructure) were evaluated throughout a 5-month exposure to ambient (8.0) and low (7.7) pH conditions. During the first 2 months, the haemolymph pH was reduced, indicating that abalone do not compensate for the pH decrease of their internal fluid. Overall metabolism and immune status were not affected, suggesting that abalone maintain their vital functions when facing OA. However, after 4 months of exposure, adverse effects on shell growth, calcification, microstructure, and resistance were highlighted, whereas the haemolymph pH was compensated. Significant reduction in shell mechanical properties was revealed at pH 7.7, suggesting that OA altered the biomineral architecture leading to a more fragile shell. It is concluded that under lower pH, abalone metabolism is maintained at a cost to growth and shell integrity. This may impact both abalone ecology and aquaculture.},
	keywords = {Abalone, calcification, Gene Expression, Growth, mechanical properties, Ocean acidification, Physiology, shell microstructure},
	issn = {1054-3139},
	doi = {10.1093/icesjms/fsz257},
	url = {https://academic.oup.com/icesjms/article/77/2/757/5699268},
	author = {Avignon, Sol{\`e}ne and St{\'e}phanie Auzoux-Bordenave and Martin, Sophie and Dubois, Philippe and Badou, Aicha and Coheleach, Manon and Richard, Nicolas and Di Giglio, Sarah and Malet, Lo{\"\i}c and Servili, Arianna and Gaillard, Fanny and Huchette, Sylvain and Roussel, Sabine}
}
@article {8140,
	title = {InvaCost, a public database of the economic costs of biological invasions worldwideAbstract},
	journal = {Scientific Data},
	volume = {7},
	year = {2020},
	month = {Jan-12-2020},
	doi = {10.1038/s41597-020-00586-z},
	url = {http://www.nature.com/articles/s41597-020-00586-z},
	author = {Diagne, C. and Leroy, B. and Gozlan, R. E. and Vaissi{\`e}re, A.-C. and Assailly, C. and Nuninger, L. and Roiz, D. and Jourdain, F. and Jari{\'c}, I. and Courchamp, F.}
}
@article {8652,
	title = {InvaCost, a public database of the economic costs of biological invasions worldwide},
	journal = {Scientific Data},
	volume = {7},
	year = {2020},
	month = {Jan-12-2020},
	doi = {10.1038/s41597-020-00586-z},
	url = {https://www.nature.com/articles/s41597-020-00586-z},
	author = {Diagne, C. and Leroy, B. and Gozlan, R. E. and Vaissi{\`e}re, A.-C. and Assailly, C. and Nuninger, L. and Roiz, D. and Jourdain, F. and Jari{\'c}, I. and Courchamp, F.}
}
@article {7091,
	title = {Isotopic analyses, a good tool to validate models in the context of Marine Renewable Energy development and cumulative impacts},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {237},
	year = {2020},
	abstract = {As part of the energy transition, the French government is planning Offshore Wind Farm (OWF) constructions in the next decades. An integrated ecosystem approach of two future OWF sites of the Eastern English Channel (Courseulles-sur-mer and Dieppe-Le Tr{\'e}port) was developed to model the marine ecosystems before the OWF implementation. Such ecosystem models allow simulating the possible reef and reserve effects associated to the presence of the farm, and to character the overall changes in the food-web functioning. This holistic view of OWF effects could be replicated on other sites and form the basis of an ecosystem based management of marine renewable energies. However, to use these models for management purpose, they need to be validated. In order to do so, stable isotope ratios of nitrogen were used for determining the accuracy of the effective trophic levels computed in these two models. Results showed that trophic levels estimated by the two models were consistent with the trophic levels estimated by the independent isotopic data. In the context of OWF development and cumulative impacts analysis, this step of validation of the models is essential for developing their use by management actors and policy makers. {\textcopyright} 2020 Elsevier Ltd},
	keywords = {alternative energy, detection method, Dieppe, Ecopath with Ecosim, ecosystem approach, English Channel, food web, France, Isotopic nitrogen analysis, marine ecosystem, model validation, Normandie, Offshore wind farm, policy making, Seine Maritime, trophic level, wind farm},
	issn = {02727714 (ISSN)},
	doi = {10.1016/j.ecss.2020.106690},
	author = {Raoux, A. and Pezy, J.-P. and Ernande, B. and Nathalie Niquil and Dauvin, J.-C. and Granger{\'e}, K.}
}
@article {7470,
	title = {Large geographic variability in the resistance of corals to thermal stress},
	journal = {Global Ecology and Biogeography},
	year = {2020},
	month = {May-10-2020},
	abstract = {<strong>Aim</strong>: Predictions for the future of coral reefs are largely based on thermal exposure and poorly account for potential geographic variation in biological sensitivity to thermal stress. Without accounting for complex sensitivity responses, simple climate exposure models and associated predictions may lead to poor estimates of future coral survival and lead to policies that fail to identify and implement the most appropriate interventions. To begin filling this gap, we evaluated a number of attributes of coral taxa and communities that are predicted to influence coral resistance to thermal stress over a large geographic range.<br>
<strong>Location</strong>:\&nbsp;Western Indo-Pacific and Central Indo-Pacific Ocean Realms.<br>
<strong>Major taxa studied</strong>:\&nbsp;Zooxanthellate Scleractinia {\textendash} hard corals.<br>
<strong>Methods</strong>:\&nbsp;We evaluated the geographic variability of coral resistance to thermal stress as the ratio of thermal exposure and sensitivity in 12 countries during the 2016 global-bleaching event. Thermal exposure was estimated by two metrics: (a) historical excess summer heat (cumulative thermal anomaly, CTA), and (b) a multivariate index of sea-surface temperature (SST), light, and water flow (climate exposure, CE). Sensitivity was estimated for 226 sites using coordinated bleaching observations and underwater surveys of coral communities. We then evaluated coral resistance to thermal stress using 48 generalized linear mixed models (GLMMs) to compare the potential influences of geography, historical SST variation, coral cover and coral richness.<br>
<strong>Results</strong>:\&nbsp;Geographic faunal provinces and ecoregions were the strongest predictors of coral resistance to thermal stress, with sites in the Australian, Indonesian and Fiji-Caroline Islands coral provinces having higher resistance to thermal stress than Africa-India and Japan-Vietnam provinces. Ecoregions also showed strong gradients in resistance with highest resistance to thermal stress in the western Pacific and Coral Triangle and lower resistance in the surrounding ecoregions. A more detailed evaluation of Coral Triangle and non-Coral Triangle sites found higher resistance to thermal stress within the Coral Triangle, associated with\&nbsp;c.\&nbsp;2.5 times more recent historical thermal anomalies and more centralized, warmer, and cool-water skew SST distributions, than in non-Coral Triangle sites. Our findings identify the importance of environmental history and geographic context in future predictions of bleaching, and identify some potential drivers of coral resistance to thermal stress.<br>
<strong>Main conclusions</strong>:\&nbsp;Simple threshold models of heat stress and coral acclimation are commonly used to predict the future of coral reefs. Here and elsewhere we show that large-scale responses of coral communities to heat stress are geographically variable and associated with differential environmental stresses and histories.},
	issn = {1466-822X},
	doi = {10.1111/geb.13191},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/geb.13191},
	author = {McClanahan, Timothy R. and Maina, Joseph M. and Darling, Emily S. and Mireille M.M. Guillaume and Muthiga, Nyawira A. and D{\textquoteright}agata, Stephanie and Leblond, Julien and Arthur, Rohan and Jupiter, Stacy D. and Wilson, Shaun K. and Mangubhai, Sangeeta and Ussi, Ali M. and Humphries, Austin T. and Patankar, Vardhan and Shedrawi, George and Julius, Pagu and Ndagala, January and Grimsditch, Gabriel}
}
@article {8550,
	title = {A Lean and Performant Hierarchical Model for Human Activity Recognition Using Body-Mounted Sensors},
	journal = {Sensors},
	volume = {20},
	year = {2020},
	month = {Jan-06-2020},
	pages = {3090},
	doi = {10.3390/s20113090},
	url = {https://www.mdpi.com/1424-8220/20/11/3090},
	author = {Debache, Isaac and Jeantet, Lor{\`e}ne and Chevallier, Damien and Bergouignan, Audrey and Sueur, C{\'e}dric}
}
@book {8129,
	title = {Les poissons d{\textquoteright}eau douce de France},
	year = {2020},
	pages = {704},
	publisher = {Biotope Editions, M{\`e}ze ; Mus{\'e}um national d{\textquoteright}Histoire naturelle, Paris (collection Inventaires et biodiversit{\'e})},
	organization = {Biotope Editions, M{\`e}ze ; Mus{\'e}um national d{\textquoteright}Histoire naturelle, Paris (collection Inventaires et biodiversit{\'e})},
	edition = {2nde},
	address = {Paris},
	author = {Philippe Keith and Poulet, Nicolas and Denys, Ga{\"e}l and Changeux Thomas and Eric Feunteun and Persat, Henri}
}
@article {8082,
	title = {The life and times of Olivier Kah through the lens of fish endocrinologists},
	journal = {General and Comparative Endocrinology},
	volume = {293},
	year = {2020},
	month = {Jan-07-2020},
	pages = {113480},
	issn = {00166480},
	doi = {10.1016/j.ygcen.2020.113480},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S001664802030188X},
	author = {Trudeau, Vance L. and Sylvie Dufour and Prunet, Patrick}
}
@article {6883,
	title = {Lipidome variations of deep-sea vent shrimps according to acclimation pressure: A homeoviscous response?},
	journal = {Deep Sea Research Part I: Oceanographic Research Papers},
	year = {2020},
	month = {Jan-04-2020},
	pages = {103285},
	issn = {09670637},
	doi = {10.1016/j.dsr.2020.103285},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S096706372030073X},
	author = {Bruce Shillito and Desurmont, C. and Barthelemy, D. and Farabos, D. and Despr{\'e}s, G. and Juliette Ravaux and Zbinden, M. and Lamazi{\`e}re, A.}
}
@article {8136,
	title = {A macroscopic and stereological imaging dataset of Pleuronectes platessa ovariesAbstract},
	journal = {Scientific Data},
	volume = {7},
	year = {2020},
	month = {Jan-12-2020},
	doi = {10.1038/s41597-020-0505-8},
	url = {http://www.nature.com/articles/s41597-020-0505-8},
	author = {Sauger, Carine and Quinquis, J{\'e}r{\^o}me and Kellner, Kristell and Clothilde Heude-Berthelin and Lepoittevin, M{\'e}lanie and Elie, Nicolas and Dubroca, Laurent}
}
@article {7173,
	title = {Matching zooplankton abundance and environment in the South Indian Ocean and Southern Ocean},
	journal = {Deep Sea Research Part I: Oceanographic Research Papers},
	year = {2020},
	month = {Jan-08-2020},
	pages = {103347},
	issn = {09670637},
	doi = {10.1016/j.dsr.2020.103347},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0967063720301345},
	author = {Godet, Claire and Robuchon, Marine and Leroy, Boris and Cott{\'e}, C{\'e}dric and Baudena, Alberto and Da Silva, Oph{\'e}lie and Fabri-Ruiz, Salom{\'e} and Lo Monaco, Claire and Sergi, Sara and Koubbi, Philippe}
}
@article {6724,
	title = {Microbial functional structure and stable isotopic variation of leptocephali across three current zones in the western South Pacific},
	journal = {Progress in Oceanography},
	volume = {182},
	year = {2020},
	pages = {102264},
	abstract = {The ecology of leptocephali remains poorly known but they appear to feed on marine snow that can vary spatially and temporally according to the food web dynamics. This study provided new information about the position of leptocephali within the functional structure of microbial plankton and other food web components of the western South Pacific (WSP) region at a large geographic scale including the New Caledonia, Fiji, and Samoa islands. The hydrographic structure varied with latitude, and nutrient levels were generally low but somewhat variable. Stable isotopic signatures were examined in relation to the 3 current zones of the eastward flowing South Equatorial Countercurrent (SECC; north), the westward South Equatorial Current (SEC; mid-latitudes), and the eastward South Tropical Countercurrent (STCC; south), and all zones were found to be primarily based on a heterotrophic planktonic functioning that were co-limited by inorganic nitrogen and phosphorus, with biomasses of planktonic groups varying with depth. Isotopic signatures of leptocephali were compared to the signatures of other mesozoplankton, micronekton, and Trichodesmium components of the food web, and in relation to the signatures of particulate organic matter (POM) that varied among the 3 collection depths. The isotopic signatures of six taxa of leptocephali, other taxonomic groups and POM showed interesting variability according to latitude and among some stations. The presence of Trichodesmium at the surface in the STCC zone influenced the isotopic signatures of POM and thus the signatures of leptocephali. The signatures of leptocephali were therefore linked with the overall food web and were consistent with the larvae feeding on marine snow components of POM. The two apparent groups of leptocephali with different isotopic signatures that have also been observed in other oceanic areas may be explained by feeding behavior at different depths or on different types of marine snow.},
	keywords = {Isotopic signature, Leptocephali, Meso-macro-zooplankton, Microbial loop, Micronekton, POM, Western South Pacific},
	issn = {0079-6611},
	doi = {10.1016/j.pocean.2020.102264},
	url = {http://www.sciencedirect.com/science/article/pii/S0079661120300021},
	author = {Leopold Ghinter and Christine Dupuy and Michael J. Miller and Alexandre Carpentier and Christel Lefran{\c c}ois and Anthony Acou and Jun Aoyama and Mari Kuroki and Li{\'e}nart, Camilla and Shun Watanabe and Katsumi Tsukamoto and Tsuguo Otake and Eric Feunteun}
}
@article {8523,
	title = {Needlepoint non-destructive internal sampling for precious fish specimens},
	journal = {Cybium},
	volume = {44},
	year = {2020},
	pages = {73-79},
	abstract = {In this paper, we describe a new non-damaging internal tissue sampling method for preserved collection of teleostean specimens. It was tested on freshwater pipefish, as external tissue sampling is made difficult by the lack of scales, the lack of pelvic fins, the atrophy of pectoral and anal fins. The internal tissue is detached by scratching the inside of the urogenital papilla with a fine metallic probe. 95\% ethanol is injected using a fine syringe, and then sucked back into the syringe with the detached tissue. this protocol has been tested on 6 specimens from 5 species of pipefish. For each specimen DNA was extracted from the internal tissue, a caudal fin clip, and when possible, eggs sampled from the male brooding pouch. Partial Cytochrome c oxydase I (COI) was amplified and sequenced. For each specimen, the 582 bp long sequences obtained from the internal tissue, the fin clip and the eggs were identical. These results validate this non-damaging internal tissue sampling method, which leaves absolutely no trace on the specimen. Although this method was developed on pipefish, it could be applied to other teleostean, even precious museum collection specimens such as type specimens. the aim of this paper, using the example of freshwater pipefish, is to present this method, which aims at preserving precious collection specimens while still valorising them.},
	doi = {https://doi.org/10.26028/cybium/2020-441-010},
	author = {Vincent Ha{\"y} and Marion Mennesson and Agn{\`e}s Dettai and C{\'e}line Bonillo and Philippe Keith and Clara Lord}
}
@article {9314,
	title = {A new freshwater crab of the family Hymenosomatidae MacLeay, 1838 (Crustacea, Decapoda, Brachyura) and an updated review of the hymenosomatid fauna of New Caledonia},
	journal = {European Journal of Taxonomy},
	volume = {671},
	year = {2020},
	month = {Jun-22-2020},
	pages = {1-29},
	abstract = {A new genus and species,\&nbsp;Richerius marqueti\&nbsp;gen. et sp. nov., of a crab of the family Hymenosomatidae MacLeay, 1838 are described from the inland waters of New Caledonia based on several specimens collected in two streams at altitudes of 180 m and 500 m, respectively.\&nbsp;Richerius marqueti\&nbsp;gen. et sp. nov. was compared to the other freshwater species known in New Caledonia,\&nbsp;Odiomaris pilosus\&nbsp;(A. Milne-Edwards, 1873), and to species of\&nbsp;Amarinus\&nbsp;Lucas, 1980, a genus comprising many freshwater species in New Zealand, Australia, Indonesia, the Philippines, and Papua New Guinea, but never recorded in New Caledonia. The barcode fragment of the COI mitochondrial gene was sequenced for seven specimens of\&nbsp;R. marqueti\&nbsp;gen. et sp. nov., and all sequences were deposited in GenBank. A brief and updated review of the New Caledonian marine and freshwater hymenosmatid fauna is provided.},
	keywords = {COI, New Caledonia, new genus, New species, Richerius marqueti},
	doi = {10.5852/ejt.2020.671},
	url = {https://europeanjournaloftaxonomy.eu/index.php/ejt/article/view/997},
	author = {Guinot, Dani{\`e}le and de Mazancourt, Valentin}
}
@article {6915,
	title = {Ocean acidification impacts growth and shell mineralization in juvenile abalone (Haliotis tuberculata)},
	journal = {Marine Biology},
	volume = {167},
	year = {2020},
	month = {Jan-01-2020},
	type = {research article},
	abstract = {Ocean acidification is a major global driver that leads to substantial changes in seawater carbonate chemistry, with potentially serious consequences for calcifying organisms. Marine shelled molluscs are ecologically and economically important species, providing essential ecosystem services and food sources for other species. Due to their physiological characteristics and their use of calcium carbonate (CaCO3) to build their shells, molluscs are among the most vulnerable invertebrates with regard to ocean acidification, with early developmental stages being particularly sensitive to pH changes. This study investigated the effects of CO2-induced ocean acidification on juveniles of the European abalone Haliotis tuberculata, a commercially important gastropod species. Six-month-old juvenile abalones were cultured for 3 months at four pH levels (8.1, 7.8, 7.7, 7.6) representing current and predicted near-future conditions. Survival, growth, shell microstructure, thickness and strength were compared across the four pH treatments. After three months of exposure, significant reductions in juvenile shell length, weight and strength were revealed in the pH 7.6 treatment. SEM observations also revealed modified texture and porosity of the shell mineral layers as well as alterations of the periostracum at pH 7.6 which was the only treatment with an aragonite saturation state below 1. It is concluded that low pH induces both general effects on growth mechanisms and corrosion of deposited shell in H. tuberculata.<br>
This will impact both the ecological role of this species and the costs of its aquaculture.},
	keywords = {Abalone, Growth, Juvenile, Ocean acidification, Shell mineralization},
	issn = {0025-3162},
	doi = {10.1007/s00227-019-3623-0},
	url = {http://link.springer.com/10.1007/s00227-019-3623-0},
	author = {St{\'e}phanie Auzoux-Bordenave and Wessel, Nathalie and Badou, Aicha and Martin, Sophie and M{\textquoteright}Zoudi, Saloua and Avignon, Sol{\`e}ne and Roussel, Sabine and Huchette, Sylvain and Dubois, Philippe}
}
@article {7896,
	title = {The onset of piscivory in a freshwater fish species: analysis of behavioural and physiological traits},
	journal = {Journal of Fish Biology},
	volume = {96},
	year = {2020},
	month = {Jan-06-2020},
	pages = {1463 - 1474},
	abstract = {The onset of piscivory in fish, resulting in a shift from zooplankton or invertebrate to fish prey, was studied on pikeperch (Sander lucioperca) larvae displaying and not dis- playing piscivorous behaviour at different ages (23, 30, 37, 44 and 52 days post- hatching) using behavioural (attack, capture and swimming activity), morphological (allometry) and digestive enzymatic (trypsin,\&nbsp;α-amylase and pepsin) analyses. The shift from zooplanktonic food items (Artemia\&nbsp;nauplii) to a piscivorous diet did not occur at the same time for all individuals within the same cohort. Predation tests, conducted under controlled conditions (20C;\&nbsp;ad libitum\&nbsp;feeding), showed that some larvae attacked fish prey as early as the age of 3 weeks [11.0 {\textpm} 1.3 mm total length (TL)], whereas others did not start until the age of 6 weeks (16.6 {\textpm} 1.9 mm TL). Piscivorous individuals were bigger, with larger heads, longer tails, higher acid protease and lower alkaline protease activities, than non-piscivorous conspecifics. In conclusion, high interindividual variability in morphological and digestive system developments linked to the development of predatory abilities could induce cannibalism in fish.},
	keywords = {behavioural tests, early life stages, freshwater fish, predatory behaviour, Sander lucioperca},
	issn = {0022-1112},
	doi = {10.1111/jfb.v96.610.1111/jfb.14322},
	url = {https://onlinelibrary.wiley.com/toc/10958649/96/6},
	author = {Tatiana Colchen and Dias, Andr{\'e}a and Gisbert, Enric and Teletchea, Fabrice and Fontaine, Pascal and Pasquet, Alain}
}
@article {8141,
	title = {An open-source framework to model present and future marine species distributions at local scale},
	journal = {Ecological Informatics},
	volume = {59},
	year = {2020},
	month = {Jan-09-2020},
	pages = {101130},
	issn = {15749541},
	doi = {10.1016/j.ecoinf.2020.101130},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1574954120300807},
	author = {Ben Rais Lasram, Frida and Hattab, Tarek and Nogues, Quentin and Beaugrand, Gr{\'e}gory and Dauvin, Jean Claude and Halouani, Ghassen and Le Loc{\textquoteright}h, Francois and Nathalie Niquil and Leroy, Boris}
}
@article {7092,
	title = {An open-source framework to model present and future marine species distributions at local scale},
	journal = {Ecological Informatics},
	volume = {59},
	year = {2020},
	abstract = {Species Distribution Models (SDMs) are useful tools to project potential future species distributions under climate change scenarios. Despite the ability to run SDMs in recent and reliable tools, there are some misuses and proxies that are widely practiced and rarely addressed together, particularly when dealing with marine species. In this paper, we propose an open-source framework that includes (i) a procedure for homogenizing occurrence data to reduce the influence of sampling bias, (ii) a procedure for generating pseudo-absences, (iii) a hierarchical-filter approach, (iv) full incorporation of the third dimension by considering climatic variables at multiple depths and (v) building of maps that predict current and potential future ranges of marine species. This framework is available for non-modeller ecologists interested in investigating future species ranges with a user-friendly script. We investigated the robustness of the framework by applying it to marine species of the Eastern English Channel. Projections were built for the middle and the end of this century under RCP2.6 and RCP8.5 scenarios. {\textcopyright} 2020 Elsevier B.V.},
	keywords = {Climate Change, ecological modeling, English Channel, filter, future prospect, hierarchical system, marine ecosystem, sampling, scenario analysis, species diversity},
	issn = {15749541},
	doi = {10.1016/j.ecoinf.2020.101130},
	url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85086876945\&doi=10.1016\%2fj.ecoinf.2020.101130\&partnerID=40\&md5=0a5c308eac10a69880027d5de2e6fe98},
	author = {Ben Rais Lasram, F. and Hattab, T. and Nogues, Quentin and Beaugrand, G. and Dauvin, J.C. and Halouani, G. and Le Loc{\textquoteright}h, F. and Nathalie Niquil and Leroy, B.}
}
@article {7132,
	title = {Origin and Evolution of the Neuroendocrine Control of Reproduction in Vertebrates, With Special Focus on Genome and Gene Duplications},
	journal = {Physiological Reviews},
	volume = {100},
	year = {2020},
	month = {Jan-04-2020},
	pages = {869 - 943},
	issn = {0031-9333},
	doi = {10.1152/physrev.00009.2019},
	url = {https://journals.physiology.org/doi/10.1152/physrev.00009.2019},
	author = {Sylvie Dufour and Qu{\'e}rat, Bruno and Tostivint, Herv{\'e} and Pasqualini, Catherine and Vaudry, Hubert and Rousseau, Karine}
}
@article {7117,
	title = {Predicting species richness and abundance of tropical post-larval fish using machine learning},
	journal = {Marine Ecology Progress Series},
	volume = {645},
	year = {2020},
	month = {Sep-07-2020},
	pages = {125 - 139},
	abstract = {No previous studies predicted post-larval fish species richness and abundance combining molecular tools, machine learning, and past-days Remotely Sensed Oceanic Conditions (RSOCs) at different scales. Previous studies aimed at modeling species richness and abundance of marine fishes have mostly used environmental variables recorded locally during sampling. They have merely focused on juvenile and adult fishes due to the difficulty of obtaining accurate species richness estimates for post-larvae. The present work predicted post-larval species richness (identified using DNA barcoding) and abundance at two coastal sites in SW Madagascar using random forests (RF). RF models were fitted using combinations of local variables with RSOCs at a small-scale (eight days preceding fish sampling in a 50x120 km2\&nbsp;area), mesoscale (sixteen past-days in 100x200 km2), and large-scale (twenty-four past-days in 200x300 km2). RF models combining local and small-scale RSOC variables predicted more accurately the species richness and abundance with around 70\% and 60\% accuracy, respectively. We observed a small variation of RF model performance in predicting species richness and abundance among all sites, highlighting the predictive RF model consistency. Moreover, partial dependence plots showed that high species richness and abundance were predicted for sea surface temperatures \&lt;27.0{\textdegree}C and chlorophyll\&nbsp;a\&nbsp;concentrations \&lt;0.22 mg m-3. Referring to temporal changes of these variables, these thresholds were solely observed from November to December. These results suggest that, in SW Madagascar, species richness and abundance of post-larval fish may only be predicted prior to the ecological impacts of tropical storms on larval settlement success.},
	issn = {0171-8630},
	doi = {10.3354/meps13385},
	url = {https://www.int-res.com/abstracts/meps/v645/p125-139/},
	author = {Jaonalison, H and Durand, JD and Mahafina, J and Demarcq, H and Teichert, Nils and Ponton, D}
}
@article {8391,
	title = {Premier signalement en France du Barbeau de Graells Luciobarbus graellsii (Steindachner, 1866) (Actinopterygii, Cypriniformes)},
	journal = {Naturae},
	year = {2020},
	month = {Sep-12-2020},
	doi = {10.5852/naturae2020a15},
	url = {http://sciencepress.mnhn.fr/fr/periodiques/naturae/2020/15},
	author = {MASSEBOEUF, Fabrice and Doadrio, Ignacio and Denys, Ga{\"e}l}
}
@article {7545,
	title = {Public Perceptions of Mangrove Forests Matter for Their Conservation},
	journal = {Frontiers in Marine Science},
	volume = {7},
	year = {2020},
	month = {Jul-11-2021},
	abstract = {Iconic species and landscapes attract public attention to help reverse the degradation of ecosystems and their biodiversity (Thompson and Rog, 2019); sharing their images on social media can act as a powerful way to influence perceptions and drive positive actions by the public (Wu et al., 2018). Social media platforms such as Twitter, Facebook and Instagram have been used to great effect to communicate the urgency required to halt and reverse tropical forest loss (Lamb et al., 2005) and the plight of coral reefs (Curnock et al., 2019). Ecosystems such as seagrass meadows, mudflats, and mangrove forests receive substantially less media exposure (Duarte et al., 2008). Yet these under-recognized ecosystems are hugely important for local and global societies, providing benefits such as shoreline protection (Barbier, 2016), fisheries (Carrasquilla-Henao and Juanes, 2017), carbon capture and storage (Duarte et al., 2013), alongside supporting rich marine and terrestrial biodiversity (Sievers et al., 2019;\&nbsp;Thompson and Rog, 2019) (Figure 1). Apart from these important ecosystem functions, goods and services, mangrove forests are home to a huge diversity of organisms with ecologically and evolutionarily unique adaptations to life in the intertidal zone, including vivipary and salt tolerance in trees, air-breathing in crabs and amphibious behavior in fish (mudskippers); this makes mangrove forests a dynamic and fascinating evolutionary laboratory.},
	doi = {10.3389/fmars.2020.60365110.3389/fmars.2020.603651.s001},
	url = {https://www.frontiersin.org/articles/10.3389/fmars.2020.603651/full},
	author = {Dahdouh-Guebas, Farid and Ajonina, Gordon N. and Amir, A. Aldrie and Andradi-Brown, Dominic A. and Aziz, Irfan and Balke, Thorsten and Barbier, Edward B. and Cannicci, Stefano and Cragg, Simon M. and Cunha-Lignon, Mar{\'\i}lia and Curnick, David J. and Duarte, Carlos M. and Duke, Norman C. and Endsor, Charlie and Fratini, Sara and Feller, Ilka C. and Fromard, Fran{\c c}ois and Hug{\'e}, Jean and Huxham, Mark and Kairo, James G. and Kajita, Tadashi and Kathiresan, Kandasamy and Koedam, Nico and Lee, Shing Yip and Lin, Hsing-Juh and Mackenzie, Jock R. and Mangora, Mwita M. and Marchand, Cyril and Tarik Meziane and Minchinton, Todd E. and Pettorelli, Nathalie and Polan{\'\i}a, Jaime and Polgar, Gianluca and Poti, Meenakshi and Primavera, Jurgenne and Quarto, Alfredo and Rog, Stefanie M. and Satyanarayana, Behara and Schaeffer-Novelli, Yara and Spalding, Mark and Van der Stocken, Tom and Wodehouse, Dominic and Yong, Jean W. H. and Zimmer, Martin and Friess, Daniel A.}
}
@article {6469,
	title = {Realistic environmental exposure to microplastics does not induce biological effects in the Pacific oyster Crassostrea gigas},
	journal = {Marine Pollution Bulletin},
	volume = {150},
	year = {2020},
	month = {Jan-01-2020},
	pages = {110627},
	abstract = {The aim of the present study was to evaluate the presence and potential toxic effects of plastic fragments(\&lt; 400μm) of polyethylene and polypropylene on the Pacific oysterCrassostrea gigas.Oysters were exposed toenvironmentally relevant concentrations (0, 0.008, 10, 100μg of particles/L) during 10 days, followed by adepuration period of 10 days in clean seawater. Effects of microplastics were evaluated on the clearance rate oforganisms, tissue alteration, antioxidant defense, immune alteration and DNA damage. Detection and quanti-fication of microplastics in oyster{\textquoteright}s tissues (digestive gland, gills and other tissues) and biodeposits using infraredmicroscopy were also conducted. Microplastics were detected in oyster{\textquoteright}s biodeposits following exposure to alltested concentrations: 0.003, 0.006 and 0.05 particles/mg of biodeposits in oysters exposed to 0.008, 10 and100μg of particles/L, respectively. No significant modulation of biological markers was measured in organismsexposed to microplastics in environmentally relevant conditions.},
	keywords = {biodeposits, biomarkers, bivalves, Crassostrea gigas, microplastics},
	issn = {0025326X},
	doi = {10.1016/j.marpolbul.2019.110627},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0025326X19307751},
	author = {Revel, Messika and Ch{\^a}tel, Am{\'e}lie and Perrein-Ettajani, Hanane and Bruneau, M{\'e}lanie and Akcha, Farida and Sussarellu, Rossana and Rouxel, Julien and Katherine Costil and Decottignies, Priscilla and Cognie, Bruno and Lagarde, Fabienne and Mouneyrac, Catherine}
}
@article {6865,
	title = {Relationship between bacterial compartment and particulate organic matter (POM) in coastal systems: An assessment using fatty acids and stable isotopes},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {239},
	year = {2020},
	month = {Jan-07-2020},
	pages = {106720},
	issn = {02727714},
	doi = {10.1016/j.ecss.2020.106720},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771419301593},
	author = {Li{\'e}nart, Camilla and Savoye, Nicolas and Conan, Pascal and David, Val{\'e}rie and Barbier, Pierrick and Bichon, Sabrina and Charlier, Karine and Costes, Laurence and Derriennic, Herv{\'e} and Ferreira, Sophie and Gueux, Aurore and C{\'e}dric Hubas and Maria, Eric and Tarik Meziane}
}
@article {7777,
	title = {Resolving the trade-off between silver eel escapement and hydropower generation with simple decision rules for turbine shutdown},
	journal = {Journal of Environmental Management},
	volume = {261},
	year = {2020},
	month = {Jan-05-2020},
	pages = {110212},
	issn = {03014797},
	doi = {10.1016/j.jenvman.2020.110212},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S030147972030147X},
	author = {Teichert, Nils and T{\'e}tard, St{\'e}phane and Thomas Trancart and Eric Feunteun and Anthony Acou and de Oliveira, Eric}
}
@article {6736,
	title = {Resolving the trade-off between silver eel escapement and hydropower generation with simple decision rules for turbine shutdown},
	journal = {Journal of Environmental Management},
	volume = {261},
	year = {2020},
	pages = {110212},
	abstract = {Hydropower plants are commonly reported as a major cause of the worldwide decline of freshwater eels (Anguillidae), so that management solutions are urgently needed to mitigate their impacts. Where downstream passage solutions are complex to develop, turbine shutdown appears as an effective management solution to protect silver eels during their river migration toward spawning areas. However, the definition of operational decision rules for turbine shutdown is challenging due to the duality between the benefit for eel conservation and the concomitant cost in term of hydropower production. Here, we proposed a decision framework for turbine shutdown based on simple hydrological criteria to guide negotiations between stakeholders toward a trade-off between silver eel escapement and hydropower generation. Eel migration was assumed to be triggered by a minimum river flow associated with a minimum discharge pulse, so that threshold values can be directly implemented as decision rules for turbine shutdown. To estimate relevant thresholds, a generic methodological framework was developed to generate alternative decision rules from data collected at hydropower plants, which can include telemetry surveys and estimates of eel abundance. A multiple-criteria decision analysis was then conducted to rank alternatives and to determine the best compromise between promoting silver eel escapement and limiting turbine shutdown duration. Graphic outputs can help stakeholders to understand the competitive interests between eel conservation and hydropower production, while visually identifying a range of consensual alternatives to support negotiations in the choice of operational thresholds. The method was illustrated for three river systems in Europe featured by distinct hydrological conditions and can be applied in other areas, providing that eel monitoring surveys and flow data are available.},
	keywords = {Conservation policy, Decision rules, Multiple-criteria decision, Turbine shutdown},
	issn = {0301-4797},
	doi = {https://doi.org/10.1016/j.jenvman.2020.110212},
	url = {http://www.sciencedirect.com/science/article/pii/S030147972030147X},
	author = {Teichert, Nils and St{\'e}phane T{\'e}tard and Thomas Trancart and Eric Feunteun and Anthony Acou and Eric de Oliveira}
}
@article {9389,
	title = {Respective contribution of urban wastewater and mangroves on nutrient dynamics in a tropical estuary during the monsoon season},
	journal = {Marine Pollution Bulletin},
	volume = {160},
	year = {2020},
	pages = {111652},
	abstract = {Estuaries of Southeast Asia are increasingly impacted by land-cover changes and pollution. Here, our research objectives were to (1) determine the origins of nutrient loads along the Can Gio estuary (Vietnam) and (2) identify the processes that affect the nutrient pools during the monsoon. We constructed four 24-h time-series along the salinity gradient measuring nutrient concentrations and stable isotopes values. In the upper estuary, urban effluents from Ho Chi Minh City were the main input of nutrients, leading to dissolved oxygen satura- tion \&lt; 20\%. In the lower estuary, ammonium and nitrite concentration peaks were explained by mangrove export. No contribution from aquaculture was detected, as it represents \&lt; 0.01\% of the total river discharge. Along the salinity gradient, nutrient inputs were rapidly consumed, potentially by phytoplankton while nitrate dual-stable isotopes indicated that nitrification occurred. Thus, even in a large and productive estuary, urban wastewater can affect nutrient dynamics with potentially important ecological risks.},
	issn = {0025326X},
	doi = {10.1016/j.marpolbul.2020.111652},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0025326X20307700},
	author = {Taillardat, Pierre and Marchand, Cyril and Friess, Daniel A. and Widory, David and Frank David and Ohte, Nobuhito and Nakamura, Takashi and Van Vinh, Truong and Thanh-Nho, Nguyen and Ziegler, Alan D.}
}
@article {6959,
	title = {Response of phytoplankton traits to environmental variables in French lakes: New perspectives for bioindication},
	journal = {Ecological Indicators},
	volume = {108},
	year = {2020},
	month = {Jan-01-2020},
	pages = {105659},
	abstract = {The restoration and the preservation of aquatics ecosystems is a critical issue in our contemporary society. In lake ecosystems, phytoplankton taxonomic-based indicators have been developed to evaluate water quality, but suffer of limited ecosystem ecological value. The recent development of functional approaches may allow to evaluate other aspects of ecosystem quality, and to develop new trait-based indicators responding to different environmental conditions. Here, our aim was to analyze the response of phytoplankton traits to numerous environmental variables and to identify relevant traits for the development of future indicator metrics. We used a French national database of 469 lakes, consisting in phytoplankton biovolumes and physicochemical values. The response of 84 morpho-functional traits towards environmental variables was tested with Machine Learning models, taking into account lake typology.<br>
We identified 21 traits significantly related to environmental variables. Dissolved Organic Carbon, Nitrates and Total Suspend Solids were the physiochemical parameters which had the higher influence on our traits selection. However the response of phytoplanktonic traits to environmental variables did not change according to lake typology, advocating for a consistent response at the whole national scale contrary to the classical taxonomic approach. We finally identified several candidate traits that could be used for the development of new metrics for French lakes in a context of bio-assessment programs.},
	issn = {1470160X},
	doi = {10.1016/j.ecolind.2019.105659},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1470160X19306521},
	author = {Derot, J. and Jamoneau, A. and Teichert, Nils and Rosebery, J. and Morin, S. and Laplace-Treyture, C.}
}
@article {8393,
	title = {Revision of Phoxinus in France with the description of two new species (Teleostei, Leuciscidae)},
	journal = {Cybium},
	volume = {44},
	year = {2020},
	pages = {205-237},
	abstract = {French minnows of the genus Phoxinus are revised based on molecular data (COI and 12S rDNA markers), morphological characters and nuptial colouration patterns. The results delineate six groups of populations, which are recognised as species. Phoxinus phoxinus is found in eastern France in the lower and middle Rhine and Seine drainages. Phoxinus bigerri occurs in the Adour drainage and populations from the Lake Geneva basin and the upper Rhine drainage are identified as Phoxinus csikii. Phoxinus dragarum, new species, from the Garonne drainage, is distinguished by its unique nuptial colour pattern (green stripe in Z3 reaching up to the anal fin base and Z4 greenish yellow in male; Z4 green-ochre and black line below in Z5 reaching from the pectoral fin bases to the anal fin base in female), and by an incomplete lateral line generally reaching to a point in front of the anal fin base or just shortly beyond the origin of the last anal fin ray. Phoxinus fayollarum, new species, from the Loire drainage, is distinguished by its unique nuptial colour pattern (green bars in Z3 and Z4, Z4 bright yellow, and belly red in male; green stripe in Z3, Z4 yellow-pinkish, and red spots at the pectoral, pelvic and anal fin base in female). Minnows of the Rh{\^o}ne drainage are identified as Phoxinus septimaniae. We consider Pisciculus varius and Phoxynus montanus as nomen oblitum and Phoxinus septimaniae as nomen protectum, and Leuciscus obtusus as incertae sedis within Leuciscidae.},
	author = {Denys, Ga{\"e}l and Dettai, Agn{\`e}s and Persat, Henri and Daszkiewicz, Piotr and Hautecoeur, M{\'e}lyne and Philippe Keith}
}
@article {8116,
	title = {Seasonal variations of phytoplankton assemblages in relation to environmental factors in Mediterranean coastal waters of Morocco, a focus on HABs species},
	journal = {Harmful Algae},
	volume = {96},
	year = {2020},
	month = {Jan-06-2020},
	pages = {101819},
	issn = {15689883},
	doi = {10.1016/j.hal.2020.101819},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1568988320300986},
	author = {Rijal Leblad, Benlahcen and Amnhir, Rachid and Reqia, Sagou and Sitel, Ferdaous and Daoudi, Mouna and Marhraoui, Mohamed and Ouelad Abdellah, Mohamed Karim and Beno{\^\i}t V{\'e}ron and Er-Raioui, Hassan and Laabir, Mohamed}
}
@article {7377,
	title = {Sediment stability: can we disentangle the effect of bioturbating species on sediment erodibility from their impact on sediment roughness?},
	journal = {Marine Environmental Research},
	volume = {162},
	year = {2020},
	month = {Jan-12-2020},
	pages = {105147},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2020.105147},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0141113620305055},
	author = {Dairain, Annabelle and Maire, Olivier and Meynard, Guillaume and Richard, Ana{\"\i}s and Rodolfo-Damiano, Tiffany and Francis Orvain}
}
@article {6917,
	title = {Sex determination in the oyster Crassostrea gigas - A large longitudinal study of population sex ratios and individual sex changes},
	journal = {Aquaculture},
	volume = {515},
	year = {2020},
	pages = {734555},
	keywords = {Crassostrea gigas, Hermaphroditism, Oysters, Sex change, sex-ratio},
	doi = {10.1016/j.aquaculture.2019.734555},
	url = {https://hal.archives-ouvertes.fr/hal-02559678},
	author = {Broquard, Coralie and Anne-Sophie Martinez and Maurouard, Elise and Lamy, Jean-Baptiste and Degremont, Lionel}
}
@article {7187,
	title = {Shells of the bivalve <i>Astarte moerchi</i>               give new evidence of a strong pelagic-benthic coupling shift occurring since the late 1970s in the North Water polynya},
	journal = {Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
	volume = {378},
	year = {2020},
	month = {Feb-10-2020},
	pages = {20190353},
	abstract = {Climate changes in the Arctic may weaken the currently tight pelagic-benthic coupling. In response to decreasing sea ice cover, arctic marine systems are expected to shift from a {\textquoteleft}sea-ice algae{\textendash}benthos{\textquoteright} to a {\textquoteleft}phytoplankton-zooplankton{\textquoteright} dominance. We used mollusc shells as bioarchives and fatty acid trophic markers to estimate the effects of the reduction of sea ice cover on the food exported to the seafloor. Bathyal bivalve\&nbsp;Astarte moerchi\&nbsp;living at 600 m depth in northern Baffin Bay reveals a clear shift in growth variations and Ba/Ca ratios since the late 1970s, which we relate to a change in food availability. Tissue fatty acid compositions show that this species feeds mainly on microalgae exported from the euphotic zone to the seabed. We, therefore, suggest that changes in pelagic-benthic coupling are likely due either to local changes in sea ice dynamics, mediated through bottom-up regulation exerted by sea ice on phytoplankton production, or to a mismatch between phytoplankton bloom and zooplankton grazing due to phenological change. Both possibilities allow a more regular and increased transfer of food to the seabed.<br>
<br>
This article is part of the theme issue {\textquoteleft}The changing Arctic Ocean: consequences for biological communities, biogeochemical processes and ecosystem functioning{\textquoteright}.},
	issn = {1364-503X},
	doi = {10.1098/rsta.2019.0353},
	url = {https://royalsocietypublishing.org/doi/10.1098/rsta.2019.0353},
	author = {Fr{\'e}d{\'e}ric Olivier and Gaillard, Blandine and Thebault, Julien and Tarik Meziane and Tremblay, Rejean and Dumont, Dany and B{\'e}langer, Simon and Gosselin, Michel and Jolivet, Aur{\'e}lie and Chauvaud, Laurent and Martel, Andr{\'e} L. and Rysgaard, S{\o}ren and Olivier, Anne-H{\'e}l{\`e}ne and Pettr{\'e}, Julien and Mars, J{\'e}r{\^o}me and Gerber, Silvain and Archambault, Philippe}
}
@article {8130,
	title = {Solomon{\textquoteright}s Gold Mine: Description or redescription of 24 species of Caridina (Crustacea: Decapoda: Atyidae) freshwater shrimps from the Solomon Islands, including 11 new species.},
	journal = {European Journal of Taxonomy},
	year = {2020},
	month = {Apr-08-2020},
	doi = {10.5852/ejt.2020.696},
	url = {https://europeanjournaloftaxonomy.eu/index.php/ejt/article/view/1051},
	author = {de Mazancourt, Valentin and Boseto, David and Marquet, G{\'e}rard and Philippe Keith}
}
@article {7990,
	title = {A spatial food web model to investigate potential spillover effects of a fishery closure in an offshore wind farm},
	journal = {Journal of Marine Systems},
	volume = {212},
	year = {2020},
	month = {Jan-12-2020},
	pages = {103434},
	issn = {09247963},
	doi = {10.1016/j.jmarsys.2020.103434},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0924796320301305},
	author = {Halouani, Ghassen and Villanueva, Ching-Maria and Raoux, Aurore and Dauvin, Jean Claude and Ben Rais Lasram, Frida and Foucher, Eric and Le Loc{\textquoteright}h, Francois and Safi, Georges and Araignous, Emma and Jean-Paul Robin and Nathalie Niquil}
}
@article {7045,
	title = {<strong>Taxonomic study of the freshwater shrimps genus <em>Atyoida</em> Randall, 1840 (Crustacea: Decapoda: Atyidae) in Polynesia with a revalidation of <em>A. tahitensis</em> Stimpson, 1860</strong>},
	journal = {Zootaxa},
	volume = {4751},
	year = {2020},
	month = {Apr-03-2021},
	pages = {55 - 74},
	abstract = {Numerous specimens of Atyoida were collected in Polynesia during specific samplings led by the Mus{\'e}um national d{\textquoteright}Histoire naturelle (MNHN, Paris) from 1983 to 2017. In the context of an integrative taxonomy, all the Polynesian specimens were morphologically and genetically studied. The molecular study proved that the specimens were split in two different clades separated by 7\% genetic distance (16S) and geographically structured that can be considered as two distinct species. In this article, A. tahitensis Stimpson, 1860 from Eastern Polynesia is re-validated as a distinct species from A. pilipes (Newport 1847) from Vanuatu to Marquesas archipelago. The morphological study, besides coloration patterns (Body blackish on its back, ornamented on its flanks with numerous bluish dots and longitudinal stripes for A. tahitensis; orange-yellow back as well as the antennular peduncle, telson and uropods with the flanks whitish ornamented with numerous blue-black patterns of various shapes for A. pilipes), did not allow us to find characters to distinguish easily the two species. Detailed re-descriptions and the geographical distribution of these two species are given and a neotype deposited in the MNHN (Paris) is designated for A. tahitensis.},
	keywords = {Atyidae, Atyoida, Crustacea, Taxonomic},
	issn = {1175-5326},
	doi = {10.11646/zootaxa.4751.110.11646/zootaxa.4751.1.3},
	url = {https://www.biotaxa.org/Zootaxa/issue/view/zootaxa.4751.1},
	author = {Camille Lorang and de Mazancourt, Valentin and Marquet, G{\'e}rard and Philippe Keith}
}
@article {8553,
	title = {Survival and breeding interval of an endangered marine vertebrate, the leatherback turtle Dermochelys coriacea, in French Guiana},
	journal = {Endangered Species Research},
	volume = {41},
	year = {2020},
	month = {Jan-02-2021},
	pages = {153 - 165},
	issn = {1863-5407},
	doi = {10.3354/esr01013},
	url = {https://www.int-res.com/abstracts/esr/v41/p153-165/},
	author = {Chevallier, Damien and Girondot, M and Berzins, R and Chevalier, J and de Thoisy, B and Fretey, J and Kelle, L and Lebreton, JD}
}
@inbook {6847,
	title = {Temperature and salinity changes in coastal waters of Western Europe: variability, trends and extreme events},
	booktitle = {Evolution of Marine Coastal Ecosystems under the Pressure of Global Changes},
	year = {2020},
	publisher = {Springer Nature },
	organization = {Springer Nature },
	edition = {H.-J. Ceccaldi et al.},
	chapter = {15},
	address = {Switzerland},
	abstract = {Coastal marine ecosystems worldwide are not only highly affected by the effects of human activities, but also by the influence of natural climate variability and global climate change. However, it is still a challenge to assess the spatial and temporal scales at which forcings operate and their persistence over time, to determine the vulnerability of coastal ecosystems to climate changes and climate extreme events, and therefore to anticipate the ecological and biological responses of these areas. By investigating these knowledge gaps, our recent studies have shown that the combination of large- and local-scale hydroclimatic influences have induced obvious changes in the physical and chemical characteristics of coastal waters in Western Europe. Because of the complex and non-linear climate-coastal ecosystem relationships, a thorough understanding of the underlying processes is still needed, while extending the spatial and temporal scales of inference. Here, using both high- and low-frequency observations collected from 1998 onwards at the outlet of the Bay of Brest and off Roscoff, we described and documented monthly changes in (1) sea surface temperature, (2) sea surface salinity, (3) river discharges and (4) precipitation patterns. By focusing on the winter period (from December to February), our study revealed that coastal waters of Western Europe are not only significantly connected to large-scale atmospheric conditions and patterns, but also to local-scale drivers such as river discharges. Current strong impacts of regional climate extreme events worldwide led us to devote more attention on understanding the possible impacts of such episodes on the long-term variability and trends of these ecosystems in coastal waters of Western Europe. The signature of extreme events in the Bay of Brest is described and the numerical simulations allowed us to highlight the link between local rivers and changes in salinity.},
	keywords = {Climate variability, Coastal ecosystems, Extreme events, High- and low-frequency in situ sampling, Large and local forcings},
	doi = {10.1007/978-3-030-43484-7_15},
	url = {https://link.springer.com/chapter/10.1007\%2F978-3-030-43484-7_15},
	author = {Charria, Guillaume and Rimmelin-Maury, Peggy and Goberville, Eric and St{\'e}phane L{\textquoteright}Helguen and Barrier, Nicolas and David-Beausire, Christine and Cariou, Thierry and Emilie Grossteffan and R{\'e}p{\'e}caud, Michel and Qu{\'e}m{\'e}ner, Loic and Theetten, S{\'e}bastien and Paul Tr{\'e}guer}
}
@article {7026,
	title = {Towards transferability in fish migration models: A generic operational tool for predicting silver eel migration in rivers},
	journal = {Science of The Total Environment},
	volume = {739},
	year = {2020},
	month = {Jan-10-2020},
	pages = {140069},
	abstract = {In the global context of river fragmentation, predicting fish migration is urgent to implement management actions aimed at protecting and promoting the free movement of diadromous fish. However, large-scale applicability of conservation measures requires transferable models that enable prediction of migration even in data-poor regions. Here, we surveyed 12 contrasted European river sites to predict the activity peaks of silver eels (Anguilla anguilla) during river migration towards spawning areas through an ensemble modelling approach. Site-specific Boosted Regression Tree (BRT) models were adjusted using standardized hydrological variables to predict migration probability, which were aggregated in consensus predictions. Results of independent cross-validations demonstrated that silver eel migration runs were accurately predicted in response to changes in river discharge. Transferability and predictive performance were improved by considering catchment-size dissimilarity between river sites (85 to 109 930 km{\texttwosuperior}) when combining the site-specific predictions. Nevertheless, we provided two examples for which the effects of human actions on flow conditions were so high that they prevented reliable predictions of migration runs. Further contributions should thus take advantage of the flexibility of our approach for updating model collection with new sites to extend the predictive performance under a larger range of ecological conditions. Our transferable hydrological-based modelling framework offers an opportunity to implement large-scale management strategies for eel conservation, even in rivers where eel monitoring data lack. The BRT models and prediction functions were compiled in an R package named {\textquoteleft}silvRpeak{\textquoteright} to facilitate operational implementation by end-user managers, which can determine when mitigation measures should be implemented to improve river continuity (e.g. turbine shutdown and sluice gate opening) and balance their economic activity towards eel conservation. The only input required is discharge records that are widely available across European hydrological stations.},
	keywords = {eel runs prediction, ensemble modelling, European eel management, fish migration, model transferability, river obstacle},
	issn = {00489697},
	doi = {10.1016/j.scitotenv.2020.140069},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0048969720335890},
	author = {Teichert, Nils and T{\'e}tard, St{\'e}phane and Thomas Trancart and de Oliveira, Eric and Anthony Acou and Alexandre Carpentier and Bourillon, Bastien and Eric Feunteun}
}
@article {6709,
	title = {Transfer of elements released by aluminum galvanic anodes in a marine sedimentary compartment after long-term monitoring in harbor and laboratory environments},
	journal = {Chemosphere},
	volume = {239},
	year = {2020},
	pages = {124720},
	abstract = {Cathodic protection by galvanic anodes (GACP) is often used to protect immerged metallic structures in harbor environments, especially GACP employing aluminum-based anodes. To follow a previous study that was performed in a laboratory on Al-anode, two monitoring periods were performed in parallel, one in an in situ environment (in the Port of Calais) for 42 months and the other in a laboratory for 18 months, to evaluate the transfer of metals constituting the Al-anode towards the sedimentary compartment. During each monitoring, two conditions of agitation of water (weak and strong) were compared, and different factors of sediment quality were used to assess the enrichment and potential toxic effects of these released metals. The results showed that the dissolution of Al-anode-induced a greater Zn enrichment of sediment than an Al enrichment. This is in contrast with the abundance of these elements present in the composition of the anode and suggested a potential toxic effect for marine organisms with regards to the discovered Zn level, especially in confined areas.},
	keywords = {Aluminum, galvanic anode, Harbor, Marine sediments, Quality index, Zinc},
	issn = {0045-6535},
	doi = {10.1016/j.chemosphere.2019.124720},
	url = {http://www.sciencedirect.com/science/article/pii/S0045653519319502},
	author = {Christelle Caplat and Olivier Basuyaux and Pineau, S and Deborde, Jonathan and Grolleau, AM and S. Leglatin and Mahaut, Marie-Laure}
}
@article {7273,
	title = {Unidirectional response to bidirectional selection on body size. I. Phenotypic, life-history, and endocrine responses},
	journal = {Ecology and Evolution},
	year = {2020},
	month = {Jan-09-2021},
	issn = {2045-7758},
	doi = {10.1002/ece3.6713},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/ece3.6713},
	author = {Renneville, Cl{\'e}mentine and Millot, Alexis and Agostini, Simon and Carmignac, David and Maugars, Gersende and Sylvie Dufour and Le Rouzic, Arnaud and Edeline, Eric}
}
@article {7100,
	title = {Unmasking continental natal homing in goliath catfish from the upper Amazon},
	journal = {Freshwater Biology},
	volume = {65},
	year = {2020},
	month = {Jul-02-2020},
	pages = {325 - 336},
	issn = {0046-5070},
	doi = {10.1111/fwb.v65.210.1111/fwb.13427},
	url = {https://onlinelibrary.wiley.com/toc/13652427/65/2},
	author = {Hauser, Marilia and Duponchelle, Fabrice and Hermann, Theodore W. and Limburg, Karin E. and Castello, Leandro and Stewart, Donald J. and Torrente-Vilara, Gislene and Garc{\'\i}a-Vasquez, Aurea and Garc{\'\i}a-D{\'a}vila, Carmen and Marc Pouilly and Pecheyran, Christophe and Ponzevera, Emmanuel and Renno, Jean-Fran{\c c}ois and Moret, Arthur S. and Doria, Carolina R. C.}
}
@article {7272,
	title = {Unravelling the changes during induced vitellogenesis in female European eel through RNA-Seq: What happens to the liver?},
	journal = {PLOS ONE},
	volume = {15},
	year = {2020},
	month = {Jan-08-2021},
	pages = {e0236438},
	doi = {10.1371/journal.pone.023643810},
	url = {https://dx.plos.org/10.1371/journal.pone.0236438},
	author = {Bertolini, Francesca and J{\o}rgensen, Michelle Grace Pinto and Henkel, Christiaan and Sylvie Dufour and Tomkiewicz, Jonna}
}
@proceedings {8401,
	title = {Upstream as a sanctuary for the French populations of catalan chub Squalius laietanus (Teleostei , Leuciscidae) threatened by the allochtonous European chub S. cephalus},
	year = {2020},
	abstract = {In the Pyr{\'e}n{\'e}es-Orientales department (France), three Mediterranean catchments (Agly, T{\^e}t and Tech) are subject to high variations in water levels during Cevenol-type events. In order to fight against the effects of these floods, dams and wiers were built along these rivers with consequences on aquatic fauna, eliminating the ecological continuum. The chub Squalius is a potamodromous fish occurring from the salmonids stream to close to the estuaries. Moreover, whereas the European chub S. cephalus was thought to be represented by a single species in France, another species, endemic to Catalonia, was described: the Catalan chub S. laietanus. However, S. cephalus was also introduced in the catchments of this area with possibly threats of hybridization. Samples from eight populations of Squalius spp coming from these rivers were genetically identified using a DNA Barcoding approach with a mitochondrial (COI) and a nuclear (RAG1) markers. Our results confirm the presence of both species in the three drainages as well as their hybridization, threatening S. laietanus by hybridization as in 70\% of Mediterrannean endemic species. There is also a downstream-upstream gradient in the presence of S. cephalus in the T{\^e}t and Tech catchments. S. laietanus seems less impacted by S. cephalus in headwaters than downstream. One of the explanations would be the numerous weirs between these areas. If the negative impacts of the absence of ecological continuum on the ichthyofauna are known and cannot be denied, these weirs might form in this case a barrier against the presence of S. cephalus in headwaters. As a consequence, S. laietanus has been evaluated as EN in the last French UICN Red List published in 2019. While the ecological parameters still need to be examined, our study brings additional information for better suited conservation actions regarding the ecological continuum.},
	author = {Rose, Morgane and Dettai, Agn{\`e}s and Lef{\`e}bvre, St{\'e}phane and Blanc, Laurence and Poulet, Nicolas and Baudier, Olivier and Hautecoeur, M{\'e}lyne and Denys, Ga{\"e}l}
}
@article {7163,
	title = {Using Modern Conservation Tools for Innovative Management of Coral Reefs: The MANACO ConsortiumVideo_1.MP4},
	journal = {Frontiers in Marine Science},
	volume = {7},
	year = {2020},
	month = {Sep-07-2021},
	doi = {10.3389/fmars.2020.0060910.3389/fmars.2020.00609.s001},
	url = {https://www.frontiersin.org/article/10.3389/fmars.2020.00609/full},
	author = {Selmoni, Oliver and Lecellier, Ga{\"e}l and Ainley, Lara and Collin, Antoine and Doucet, Raimana and Dubousquet, Vaimiti and Feremaito, Hudson and Ito Waia, Edouard and Kininmonth, Stuart and Magalon, H{\'e}l{\`e}ne and Malimali, Siola{\textquoteright}a and Maugateau, Ateliana and Meibom, Anders and Mosese, Stephen and Ren{\'e}-Trouillefou, Malika and Satoh, Noriyuki and van Oppen, Madeleine J. H. and Xozam{\'e}, Andr{\'e} and Y{\'e}kawene, Maxime and Joost, St{\'e}phane and Berteaux-Lecellier, V{\'e}ronique}
}
@article {7480,
	title = {What evidence exists on the impacts of chemicals arising from human activity on tropical reef-building corals? A systematic map protocol},
	journal = {Environmental Evidence},
	volume = {9},
	year = {2020},
	month = {Aug-03-2020},
	abstract = {<strong>Background:</strong> Tropical coral reefs cover ca. 0.1\% of the Earth{\textquoteright}s surface but host an outstanding biodiversity and provide important ecosystem services to millions of people living nearby. However, they are currently threatened by both local (e.g. nutrient enrichment and chemical pollution of coastal reefs, arising from poor land management, agriculture and industry) and global stressors (mainly seawater warming and acidification, i.e. climate change). Global and local stressors interact together in different ways, but the presence of one stressor often reduces the tolerance to additional stress. While global stressors cannot be halted by local actions, local stressors can be reduced through ecosystem management, therefore minimizing the impact of climate change on reefs. To inform decision-makers, we propose here to systematically map the evidence of impacts of chemicals arising from anthropogenic activities on tropical reef-building corals, which are the main engineer species of reef ecosystems. We aim to identify the combinations of chemical and coral responses that have attracted the most attention and for which evidence can be further summarized in a systematic review that will give practical information to decision-makers.<br>
<strong>Methods:</strong> The systematic map will follow the Collaboration for Environmental Evidence Guidelines and Standards for Evidence Synthesis in Environmental Management. We will search the relevant literature using English terms combined in a tested search string in two publication databases (Web Of Science Core Collection and Scopus). The search string will combine terms describing the population (tropical reef-building corals) and the exposure (chemicals). We will supplement this literature with some more obtained through search engines, specialist websites, and through a call to local stakeholders. Titles, abstracts, and full-texts will then be successively screened using pre-defined eligibility criteria. A list of pre-defined variables will then be extracted from full-texts. Finally, a database of all studies included in the map with coded metadata will be produced. The evidence will be described in a map report with text, figures and tables, and a matrix showing the distribution and frequency of included study into types of exposure and types of outcomes will be computed to identify potential knowledge gaps and knowledge clusters.},
	keywords = {Contamination, Hermatypic, Nutrients, pollution, Scleractinian},
	doi = {10.1186/s13750-020-00203-x},
	url = {https://environmentalevidencejournal.biomedcentral.com/articles/10.1186/s13750-020-00203-x},
	author = {Ou{\'e}draogo, Dakis-Yaoba and Sordello, Romain and Brugneaux, S. and Burga, K. and Calvayrac, C. and Castelin, Magalie and Domart-Coulon, Isabelle and Ferrier-Pages, C and Mireille M.M. Guillaume and H{\'e}douin, L. and Joannot, P. and Perceval, O. and Reyjol, Yorick}
}
@article {6730,
	title = {When {\textquotedblleft}safe{\textquotedblright} dams kill: Analyzing combination of impacts of overflow dams on the migration of silver eels},
	journal = {Ecological Engineering},
	volume = {145},
	year = {2020},
	pages = {105741},
	abstract = {1. The drastic decline in European eel\&nbsp;Anguilla anguilla\&nbsp;stock is now widely recognized. However, while various causes for this decline have been identified, the relative importance of each cause remains unclear.<br />
<br />
2. During the catadromous migration of silver eels, the negative impact of dams is frequently highlighted, but mainly for powered dams (with turbines) or where connectivity is completely ruptured. Mechanical impact due to turbine blades is often considered the most important cause of mortality of silver eels during downstream migration. Consequently, non-powered dams equipped with spillways are often considered safe for the passage of migrating silver eels.<br />
<br />
3. We hypothesized that, to understand the negative impacts of dams, a much wider context must be considered than turbine mortality alone. Using an acoustic telemetry survey of silver eels, we demonstrated the negative effects of non-powered dams on downstream migration.<br />
<br />
4. Five main impacts on eel populations were highlighted: (i) the attenuation or loss of triggering factors, leading to an absence of or delay in migration; (ii) extra delays and extra distances travelled when crossing the dam; (iii) extra energetic costs of the additional distance travelled as result of exploring the dam and the reservoir to find other escape passages; (iv) the selection of a more risky behavioral phenotype, i.e., bold eels; and (v) direct blocking once migration has started. Mortality was evaluated as a supplementary impact. Some of these effects (attenuation of triggers, extra delays to cross the dam) might be more important than the same effect from powered dams, probably due to the constant high water discharge required for turbines that facilitate the passage of eels.<br />
<br />
5. As these {\textquotedblleft}safe{\textquotedblright} dams are very widespread, they must be considered a potential threat to effective eel conservation.},
	keywords = {Acoustic telemetry, Migration, mortality, Non-powered dams, Silver eels, Turbines drinking water intake},
	issn = {0925-8574},
	doi = {https://doi.org/10.1016/j.ecoleng.2020.105741},
	url = {http://www.sciencedirect.com/science/article/pii/S092585742030029X},
	author = {Thomas Trancart and Alexandre Carpentier and Anthony Acou and Fabien Charrier and Virgile Mazel and Valentin Danet and Eric Feunteun}
}
@article {6017,
	title = {Activation of the brain-pituitary-gonadotropic axis in the black porgy Acanthopagrus schlegelii during gonadal differentiation and testis development and effect of estradiol treatment.},
	journal = {General and Comparative Endocrinology},
	volume = {281},
	year = {2019},
	pages = {17-29},
	author = {Lin, Chien-Ju and Wu, Guan-Chung and Sylvie Dufour and Chang, Ching-Fong}
}
@article {6879,
	title = {Are shallow-water shrimps proxies for hydrothermal-vent shrimps to assess the impact of deep-sea mining?},
	journal = {Marine Environmental Research},
	volume = {151},
	year = {2019},
	month = {Jan-10-2019},
	pages = {104771},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2019.104771},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0141113619303216},
	author = {Mestre, N.C. and Auguste, M. and de S{\'a}, L.C. and Fonseca, T.G. and Cardoso, C. and Brown, A. and Barthelemy, D. and Charlemagne, N. and Hauton, C. and Machon, J. and Juliette Ravaux and Bruce Shillito and Thatje, S. and Bebianno, M.J.}
}
@article {9384,
	title = {Assessing nutrient dynamics in mangrove porewater and adjacent tidal creek using nitrate dual-stable isotopes: A new approach to challenge the Outwelling Hypothesis?},
	journal = {Marine Chemistry},
	volume = {214},
	year = {2019},
	pages = {103662},
	abstract = {The importance of mangrove-derived material in sustaining coastal food webs (i.e. the Outwelling Hypothesis) is often invoked in support of mangroves conservation. Biogeochemical cycling, particularly nitrogen (N) and phosphorus (P) in mangrove ecosystems, however, is poorly understood because of high spatial heterogeneity and temporal variability of sources, sinks, and transformation pathways. Here we show that the distribution of N and P are intimately related to vegetation distribution, tidal cycles, and seasonality. We examined the dynamics of N and P in sediments and in a tidal creek of the Can Gio Mangrove Forest, Vietnam. Our objectives were to (1) determine the spatial distribution of dissolved inorganic nitrogen and phosphorus in the mangrove forest along a Rhizophora-Avicennia-mudflat transect; and (2) identify the respective inputs and transformation pathways of N and P in the water column via 24-h time series measurements in a tidal creek. Sediment porewater had N-NH4+ and N-NO3- concentrations \&lt; 11 μM, except in the mudflat where N-NH4+ was as high as 162 μM. This difference was likely due to N-NH4+ uptake by trees in the vegetated areas and suggests that mangrove sediments can be a zone of NH4+ production via ammonification of organic nitrogen. In all stands, P-PO43- concentrations were three-fold higher during the wet season, with a maximum of 34.4 μM. This can be explained by enhanced microbial activity during the rainy season. The phosphorus seasonal trend was also observed in the creek water but with a maximum P-PO43- value of 4.3 μM only. In the tidal creek, NNH4+ was highly variable (0 to 51 μM), with the higher values measured at low tide and related to porewater discharge from the mudflat. Our data suggest that mangroves act both as a sink of dissolved inorganic nutrients via vegetation uptake and a source of ammonium from unvegetated mudflat porewater towards the tidal creek. The dual stable isotopes approach (δ15NNO3 \&amp; δ18ONO3) revealed that this ammonium was later nitrified within the water column. Moreover, the approach showed that some nitrate originated from the river-estuarine system during rising tides. The export of ammonium from mangrove porewater is presumably entirely consumed before exiting the tidal creek, thereby limiting the spatial extent of mangrove Outwelling. Nevertheless, our multi-isotope approach leads us to conclude that nutrients recycling via mangrove-derived organic matter mineralization may play a fundamental role in sustaining coastal food web.},
	issn = {03044203},
	doi = {10.1016/j.marchem.2019.103662},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0304420319300489},
	author = {Taillardat, Pierre and Ziegler, Alan D. and Friess, Daniel A. and Widory, David and Frank David and Ohte, Nobuhito and Nakamura, Takashi and Evaristo, Jaivime and Thanh-Nho, Nguyen and Van Vinh, Truong and Marchand, Cyril}
}
@article {LeGuen2019,
	title = {Assessing the ecological status of an estuarine ecosystem: linking biodiversity and food-web indicators},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {228},
	year = {2019},
	note = {cited By 0},
	publisher = {Academic Press},
	abstract = {During the last decades, the highly-anthropized Seine estuary has been impacted by modification of its habitats (building of a major extension of Le Havre harbour, i.e. Port2000) and a significant natural decrease in freshwater discharge. A Before/After analysis, using a toolbox of indicators, was applied to characterize the effects of both events on the estuarine ecosystem status. We selected from existing tool boxes several indicators derived from food web modelling or community composition data, such as biodiversity indicators, a guild-based index (i.e. Estuarine and Lagoon Fish Index ELFI) and ecological network analysis (ENA) indices. ENA and biodiversity indicators were applied on six spatial boxes describing the Seine estuary and its outlet. Results showed an increase in taxonomic and functional richness over time, mainly due to marinisation, and significant changes in food-web properties in relation to Port2000. ENA indices appeared as a promising method in ecological status assessment, especially for estuaries considered as inherently disturbed. {\textcopyright} 2019 Elsevier Ltd},
	keywords = {Biodiversity, bioindicator, community composition, ecological approach, ecological modeling, ecosystem function, ecosystem health, environmental assessment, estuarine ecosystem, food web, France, habitat management, health status, human activity, Le Havre, Normandie, Seine Estuary, Seine Maritime},
	issn = {02727714},
	doi = {10.1016/j.ecss.2019.106339},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0272771419300484},
	author = {Le Guen, Camille and Samuele Tecchio and Jean-Claude Dauvin and De Roton, G. and Lobry, Jeremy and Lepage, Mario and Morin, Jocelyne and G{\'e}raldine Lassalle and Raoux, Aurore and Nathalie Niquil}
}
@article {6045,
	title = {Barbatula leoparda (Actinopterygii, Nemacheilidae), a new endemic species of stone loach of French Catalonia},
	journal = {Cybium},
	volume = {43},
	year = {2019},
	pages = {169-177},
	abstract = {<p class="rtejustify">This study described a new stone loach species in France, <em>Barbatula leoparda</em>, which is endemic to French Catalonia (T{\^e}t and Tech river drainages). Seven specimens were compared to 49 specimens of <em>B. barbatula\&nbsp;</em>(Linnaeus, 1758) and 71 specimens of <em>B. quignardi </em>(B{\u a}cescu-Me{\c s}ter, 1967). This new species is characterized by the presence of blotches on the belly and the jugular area in individuals longer than 47 mm SL and by a greater interorbital distance (35.5 to 41.8\% of the head length). We brought moreover the sequence of two mitochondrial markers (COI and 12S, respectively 652 and 950 bp) of the holotype, which are well distinct from all other species, for molecular identifications. This discovery is important for conservation.</p>
},
	keywords = {Barbatula leopard, French Catalonia, Freshwater, Nemacheilidae, New species},
	author = {Gauliard, Camille and Dettai, Agn{\`e}s and Persat, Henri and Philippe Keith and Denys, Ga{\"e}l}
}
@article {6859,
	title = {Beaches seasonal and paroxysmal morphosedimentary dynamics. results of 10 years Martinique coastal observation network. },
	journal = {Journal of Coastal Research},
	volume = {SI 88},
	year = {2019},
	pages = {172-184},
	author = {Franck Dolique and Sedrati, M. and Charpentier, J. and Jeanson, Matthieu and Cohen, O. and Dupuy, L. and Alami, S.}
}
@article {6742,
	title = {Behaviour of endangered European eels in proximity to a dam during downstream migration: Novel insights using high accuracy 3D acoustic telemetry},
	journal = {Ecology of Freshwater Fish},
	volume = {29},
	year = {2019},
	pages = {266-279},
	abstract = {River infrastructures such as weirs, hydropower stations or water reservoirs represent obstructions to migration for diadromous fish. Knowledge of accurate behaviour of fish in front of such structures is required to protect migrants from hazardous areas, guide them towards safe passage or adapt structure to improve the escapement. We developed and made available a method to process acoustic telemetry data based on Time Difference Of Arrival analysis to accurately locate tagged fish. Improved accuracy allows the detection of escape routes and description of dam-crossing tactics. Sixteen tagged eels were tracked with high accuracy (1{\textendash}2\&nbsp;m) and 1 location min-1 frequency during their exploration period on reaching the dam. Two migration routes (spillways and bottom compensation flow pipe) were used by 77\% and 23\% of eels respectively. Spillways were the preferred route, but a median of 16\&nbsp;days were required to pass the dam versus 1.1\&nbsp;days via the compensation pipe. A minimal water crest of 40\&nbsp;cm was required for passage via spillways. Eels passing through the compensation pipe were exclusively nocturnal and mainly explored the bottom of the dam. Eels passing through spillways explored the whole dam area by night and day, and were not attracted to the compensation pipe entrance. With global warming, more frequent drought periods are expected, potentially leading to decreased opportunities for eels to migrate across safer dams by spillways. To conserve this endangered species, dam management strategies that account for expected hydrologic conditions and distinct exploration behaviours are needed.},
	keywords = {3D acoustic telemetry, dam, diadromous fish, downstream migration, European eel},
	doi = {10.1111/eff.12512},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12512},
	author = {Thomas Trancart and Alexandre Carpentier and Anthony Acou and Danet, Valentin and Elliott, Sophie and Eric Feunteun}
}
@article {6933,
	title = {Biochemical composition and energy content of size-fractionated zooplankton east of the Kerguelen Islands},
	journal = {Polar Biology},
	volume = {42},
	year = {2019},
	month = {Jan-03-2019},
	pages = {603 - 617},
	issn = {0722-4060},
	doi = {10.1007/s00300-019-02458-8},
	url = {http://link.springer.com/10.1007/s00300-019-02458-8},
	author = {Harmelin-Vivien, Mireille and Bӑnaru, Daniela and Charlotte R. Dromard and Ourgaud, M{\'e}lanie and Carlotti, Fran{\c c}ois}
}
@article {7174,
	title = {Can we generate robust species distribution models at the scale of the Southern Ocean?},
	journal = {Diversity and Distributions},
	volume = {25},
	year = {2019},
	month = {Jan-01-2019},
	pages = {21 - 37},
	doi = {10.1111/ddi.12835},
	url = {http://doi.wiley.com/10.1111/ddi.12835},
	author = {Fabri-Ruiz, Salom{\'e} and Danis, Bruno and David, Bruno and Sauc{\`e}de, Thomas},
	editor = {Treml, Eric}
}
@article {9315,
	title = {Caridina malanda, a new species of freshwater shrimp (Crustacea: Decapoda: Atyidae) from the Wet Tropics World Heritage area, north{\textendash}eastern Queensland, Australia},
	journal = {Zootaxa},
	volume = {4652},
	year = {2019},
	month = {Jul-08-2019},
	abstract = {Integrated molecular and morphological studies of newly collected and curated specimens of the genus\&nbsp;Caridina\&nbsp;from the Atherton Tablelands, Wet Tropics World Heritage Area in north{\textendash}eastern Queensland, Australia indicated the presence of an undescribed species belonging to the\&nbsp;Caridina zebra\&nbsp;Short 1993 complex. This species is somewhat intermediate, although distinct on the basis of molecular data and morphology, from two known sympatric species,\&nbsp;Caridina zebra\&nbsp;and\&nbsp;C. confusa\&nbsp;Choy \&amp; Marshall 1997, and an allopatric species,\&nbsp;C. spinula\&nbsp;Choy \&amp; Marshall 1997, from the Cape York Peninsula, about 500 km north. It is described here as a new species,\&nbsp;C. malanda\&nbsp;sp. nov., and compared with similar congeners. A key for the identification of the species, as well as notes on its distribution, ecology, and conservation, are provided.},
	issn = {1175-5326},
	doi = {10.11646/zootaxa.4652.110.11646/zootaxa.4652.1.5},
	url = {https://www.mapress.com/zt/issue/view/zootaxa.4652.1},
	author = {CHOY, SATISH and PAGE, TIMOTHY J. and de Mazancourt, Valentin and MOS, BENJAMIN}
}
@article {6796,
	title = {Characterization of an evolutionarily conserved calcitonin signalling system in a lophotrochozoan, the Pacific oyster (Crassostrea gigas)      },
	journal = {The Journal of Experimental Biology},
	volume = {222},
	year = {2019},
	month = {Jan-07-2019},
	pages = {jeb201319},
	issn = {0022-0949},
	doi = {10.1242/jeb.201319},
	url = {http://jeb.biologists.org/lookup/doi/10.1242/jeb.201319},
	author = {Julie Schwartz and R{\'e}alis-Doyelle, Emilie and Marie-Pierre Dubos and Lefranc, Benjamin and Leprince, J{\'e}r{\^o}me and Pascal Favrel}
}
@article {6116,
	title = {Characterization of an evolutionarily conserved calcitonin signalling system in a lophotrochozoan, the Pacific oyster ().},
	journal = {J Exp Biol},
	volume = {222},
	year = {2019},
	month = {2019 Jul 05},
	abstract = {<p>In Protostoma, the diuretic hormone 31 (DH31) signalling system was long considered as the orthologue of the chordate calcitonin (CT) signalling system. Using the Pacific oyster () transcriptomic database GigaTON, we characterized seven G-protein-coupled receptors (GPCRs) named Cragi-CTR1-7 and phylogenetically related to chordate CT receptors (CTRs) and to protostome DH31 receptors. Two CT precursors (Cragi-CTP1 and Cragi-CTP2) containing two CT-type peptides and encoded by two distinct genes with a similar organization were also characterized. These oyster neuropeptides (Cragi-CT1/2) exhibit the two N-terminal paired cysteine residues and, except CTP2-derived peptide (Cragi-CTP2dp), show the C-terminal proline-amide motif typical of deuterostome CT-type peptides. All mature Cragi-CTs except Cragi-CTP2dp were detected in visceral ganglion extracts using mass spectrometry. Cell-based assays revealed that the previously characterized oyster receptors Cg-CT-R and Cragi-CTR2 were specifically activated by Cragi-CT1b and Cragi-CT2, respectively. This activation does not require the co-expression of receptor activity-modifying proteins (RAMPs). Thus, oyster CT signalling appears functionally more closely related to vertebrate CT/CTR signalling than to calcitonin gene-related peptide/calcitonin receptor-like receptor (CGRP/CLR) signalling. Gene expression profiles in different adult tissues and in oysters acclimated to brackish water suggest the potential implication of both Cg-CT-R/Cragi-CT1b and Cragi-CTR2/Cragi-CT2 in water and ionic regulations, although with apparently opposite effects. The present study represents the first comprehensive characterization of a functional CT-type signalling system in a protostome and provides evidence for its evolutionarily ancient origin and its early role in osmotic homeostasis.</p>
},
	issn = {1477-9145},
	doi = {10.1242/jeb.201319},
	author = {Julie Schwartz and R{\'e}alis-Doyelle, Emilie and Marie-Pierre Dubos and Lefranc, Benjamin and Leprince, J{\'e}r{\^o}me and Pascal Favrel}
}
@article {7104,
	title = {Commercial traceability of Arapaima spp. fisheries in the Amazon basin: can biogeochemical tags be useful?},
	year = {2019},
	author = {Santos, Roberto and Hauser, Marilia and Duponchelle, Fabrice and Carvajal, Fernando and Pecheyran, Christophe and B{\'e}rail, Sylvain and Marc Pouilly and Pereira, Luciana}
}
@article {5930,
	title = {The complex study of complexes: The first well-supported phylogeny of two species complexes within genus Caridina (Decapoda: Caridea: Atyidae) sheds light on evolution, biogeography, and habitat},
	journal = {Molecular Phylogenetics and Evolution},
	volume = {131},
	year = {2019},
	pages = {164-180},
	abstract = {<p>Atyid shrimps, a key component of tropical freshwater ecosystems, face multiple anthropogenic threats and thus</p>

<p>need special attention. With more than 300 described species, the genus Caridina is the most speciose of all the</p>

<p>Caridea infra-order. Caridina spp. occupy diverse habitats in tropical freshwaters of the Indo-West Pacific region.</p>

<p>Several species complexes have been recognized, based on common morphological features, but little is known</p>

<p>about how well these morphological characteristics align with phylogenetic characteristics. Furthermore, no</p>

<p>phylogeny of the genus Caridina published so far has provided well-resolved and supported relationships among</p>

<p>different species, thus impeding the possibility of proposing evolutionary hypotheses. In this study we used next</p>

<p>generation sequencing (NGS) to provide new insights into the phylogenetic relationships among the genus</p>

<p>Caridina, focusing on two complexes: {\textquoteleft}Caridina nilotica{\textquoteright} and {\textquoteleft}Caridina weberi{\textquoteright}. We collected 92 specimens belonging</p>

<p>to these two groups from most of their known geographical range, representing 50 species, for which we</p>

<p>sequenced seven mitochondrial genes and two nuclear markers using ion torrent NGS. We performed a phylogenetic</p>

<p>analysis, which yielded the first well-supported tree for the genus Caridina. On this tree were mapped the</p>

<p>geographic ranges and the habitats used by the different species, and a time calibration was tested. We found the</p>

<p>driving factors that most likely account for separation of clades are differences in habitat and to a lesser extent</p>

<p>geography. This work provides new insights into the taxonomy of this group and identifies opportunities for</p>

<p>further studies in order to fill knowledge gaps that currently impede the management and conservation of atyid</p>

<p>species.</p>

<p>1. Introduction</p>
},
	keywords = {amphidromy, freshwater shrimp, Indo-Pacific, Mitochondrial genome, Molecular systematics, taxonomy},
	author = {de Mazancourt, Valentin and Klotz, Werner and Marquet, G{\'e}rard and Mos, B and Rogers, C and Philippe Keith}
}
@article {8398,
	title = {Cottus petiti Bǎcescu \& Bǎcescu-Me{\c s}ter, 1964 (Cottidae)},
	journal = {Cybium},
	volume = {43},
	year = {2019},
	pages = {215-216},
	author = {Lef{\`e}bvre, St{\'e}phane and Richard, Sylvain and Beaudou, Domninique and Denys, Ga{\"e}l}
}
@article {6858,
	title = {decadal scale dynamics and morphological evolution of mangroves and beaches in a reef-lagoon complex, Mayotte island.},
	journal = {Journal of Coastal Research},
	volume = {SI 88},
	year = {2019},
	author = {Jeanson, Matthieu and Franck Dolique and Anthony, Edward J.}
}
@article {6935,
	title = {Detection of Adsorbed Chlordecone on Microplastics in Marine Sediments in Guadeloupe: A Preliminary Study},
	journal = {Gulf and Caribbean Research},
	volume = {30},
	year = {2019},
	month = {Jan-01-2019},
	pages = {GCFI8 - GCFI14},
	doi = {10.18785/gcr.3001.14},
	url = {https://aquila.usm.edu/gcr/vol30/iss1/14/},
	author = {Sandre, Fidji and Charlotte R. Dromard and Le Menach, Karyn and Bouchon-Navaro, Yolande and Cordonnier, S{\'e}bastien and Tapie, Nathalie and Budzinski, H{\'e}l{\`e}ne and Bouchon, Claude}
}
@article {6737,
	title = {Distribution of anguillid leptocephali and possible spawning areas in the South Pacific Ocean},
	journal = {Progress in Oceanography},
	volume = {180},
	year = {2019},
	pages = {102234},
	abstract = {Seven South Pacific anguillid eel species live from New Guinea to French Polynesia, but their spawning areas and life histories are mostly unknown despite previous sampling surveys. A July{\textendash}October 2016 research cruise was conducted to study the spawning areas and times, and larval distributions of South Pacific anguillid eels, which included a short 155{\textdegree}E station-line northeast of New Guinea and five long transects (5{\textendash}25{\textdegree}S, 160{\textdegree}E{\textendash}140{\textdegree}W) crossing the South Equatorial (SEC) and other currents. This survey collected nearly 4000 anguilliform leptocephali at 179 stations using an Isaacs-Kidd Midwater Trawl accompanied by 104 CTD casts. Based on morphometric observations and DNA sequencing, 74 anguillid leptocephali were collected, which in the southern areas included 29 larvae of six species: Anguilla bicolor pacifica, A. marmorata, A. australis, A. reinhardtii, A. megastoma,and A. obscura (all anguillid species of the region were caught except A. dieffenbachii). Small A. australis (9.0{\textendash}16.8\&nbsp;mm) and A. reinhardtii (12.4, 12.5\&nbsp;mm) leptocephali were collected south of the Solomon Islands, other A. australis (10.8{\textendash}12.0\&nbsp;mm) larvae were caught northwest of Fiji along with an A. obscura (20.0\&nbsp;mm) larva, and an A. marmorata (7.8\&nbsp;mm) larva was collected near Samoa. Considering collection sites, larval ages from otolith analysis, and westward SEC drift, multiple spawning locations occurred from south of the Solomon Islands and the Fiji area (16{\textendash}20\&nbsp;days old larvae) to near Samoa (19\&nbsp;days old larva) during June and July in areas where high-salinity Subtropical Underwater (STUW, 150\&nbsp;m depth) and the warm, low-salinity surface Fresh Pool were present. Five long hydrographic sections showed the strong Fresh Pool in the west and the STUW formation area in the east.},
	keywords = {Early life history, Freshwater eels, Migration, otolith, South Pacific, Spawning},
	issn = {0079-6611},
	doi = {https://doi.org/10.1016/j.pocean.2019.102234},
	url = {http://www.sciencedirect.com/science/article/pii/S0079661119304148},
	author = {Mari Kuroki and Michael J. Miller and Eric Feunteun and Pierre Sasal and Timothy Pikering and Yu-San Han and Elisabeth Faliex and Anthony Acou and Aur{\'e}lie Dessier and Robert Schabetsberger and Shun Watanabe and Tatsuya Kawakami and Hiroaki Onda and Takatoshi Higuchi and Aya Takeuchi and Madoka Shimizu and Chinthaka A. Hewavitharane and Seishi Hagihara and Terumasa Taka and Shingo Kimura and Noritaka Mochioka and Tsuguo Otake and Katsumi Tsukamoto}
}
@article {6016,
	title = {Dmrt1 (doublesex and mab-3-related transcription factor 1) expression during gonadal development and spermatogenesis in the Japanese eel.},
	journal = {General and Comparative Endocrinology},
	volume = {279},
	year = {2019},
	pages = {154-163},
	author = {Jeng, Shan-Ru and Wu, Guan-Chung and Wen-Shiun Yueh and Kuo, S-F and Sylvie Dufour and Chang, Ching-Fong}
}
@article {8403,
	title = {Does Loire grayling represent a distinct species ?},
	journal = {Frontiers in Marine Science},
	volume = {6},
	year = {2019},
	month = {Jan-01-2019},
	doi = {10.3389/conf.fmars.2019.07.00070},
	url = {http://www.frontiersin.org/Community/AbstractDetails.aspx?ABS_DOI=10.3389\%2fconf.fmars.2019.07.00070},
	author = {Persat, Henri and Denys, Ga{\"e}l and Froufe, Elsa and Secci-Petretto, Giulia and Weiss, Steven Weiss}
}
@article {6044,
	title = {Does your lip stick? Evolutionary aspects of the mouth morphology of the Indo-Pacific clinging goby of the Sicyopterus genus (Teleostei: Gobioidei: Sicydiinae) based on mitogenome phylogeny.},
	journal = {Journal of Zoological Systematics and Evolutionary Research},
	year = {2019},
	abstract = {<p class="rtejustify">Sicydiinae gobies have an amphidromous life cycle. Adults grow, feed, and reproduce in rivers, while larvae have a marine dispersal phase. Larvae recruit back to rivers and settle in upstream habitats. Within the Sicydiinae subfamily, the\&nbsp;<em>Sicyopterus </em>genus, one of the most diverse (24 species), is distributed in the tropical islands of the Indo-Pacific. One of the characters used to determine <em>Sicyopterus </em>species is the upper lip morphology, which can be either smooth, crenulated, or with papillae, and with (2 or 3) or without clefts. The mouth is used as a secondary locomotor organ along with the pelvic sucker. It is thus strongly related to the climbing ability of species and is of major importance for the upstream migration and the colonization of insular freshwater systems. The mouth also has an important role in the feeding mechanism of these herbivorous species. In this paper, we have established a molecular phylogeny of the genus based on the 13 mitochondrial protein-coding genes to discuss the relationship between 18 Sicyopterus species. There is a well-supported dichotomy in the molecular phylogeny of the <em>Sicyopterus</em> genus and this separation into two clades is also morphologically visible, with the distinction of species with three clefts and species with 0 or 2 clefts on the upper lip. The mouth morphology can thus be separated with regard to the molecular phylogeny obtained. The evolution of the mouth morphology is discussed in terms of the adaptation of the <em>Sicyopterus</em> genus to settlement and life in tropical insular river systems.</p>
},
	keywords = {mitogenome, mouth morphology, Phylogeny, Sicydiinae, Sicyopterus},
	doi = {DOI: 10.1111/jzs.12291},
	author = {Clara Lord and Laure Bellec and Dettai, Agn{\`e}s and Bonillo, C{\'e}line and Philippe Keith}
}
@article {Fath20191,
	title = {Ecological network analysis metrics: The need for an entire ecosystem approach in management and policy},
	journal = {Ocean and Coastal Management},
	volume = {174},
	year = {2019},
	note = {cited By 8},
	pages = {1-14},
	publisher = {Elsevier Ltd},
	abstract = {In this paper, we identified seven ecological network analysis (ENA) metrics that, in our opinion, have high potential to provide useful and practical information for environmental decision-makers and stakeholders. Measurement and quantification of the network indicators requires that an ecosystem level assessment is implemented. The ENA metrics convey the status of the ecological system state variables, and mostly, the flows and relations between the various nodes of the network. The seven metrics are: 1) Average Path Length (APL), 2) Finn Cycling Index (FCI), 3) Mean Trophic level (MTL), 4) Detritivory to Herbivory ratio (D:H), 5) Keystoneness, 6) Structural Information (SI), and 7) Flow-based Information indices. The procedure for calculating each metric is detailed along with a short evaluation of their potential assessment of environmental status. {\textcopyright} 2019 Elsevier Ltd},
	keywords = {coastal zone, Cycling, Decision making, ecological approach, Ecological network analysis, ecosystem approach, ecosystem management, Ecosystems, environmental policy, food web, Food webs, Marine and coastal environments, Marine environment, network analysis, policy implementation, stakeholder, Trophic length},
	issn = {09645691},
	doi = {10.1016/j.ocecoaman.2019.03.007},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0964569118305969},
	author = {Fath, B.D. and H Asmus and R. Asmus and Baird, D. and Borrett, S.R. and de Jonge, V.N. and Ludovisi, A. and Nathalie Niquil and Scharler, U.M. and Sch{\"u}ckel, U. and Wolff, M.}
}
@proceedings {6079,
	title = {Ecoregionalisation and conservation of benthic communities in the French exclusive economic zone of Kerguelen},
	volume = {1},
	year = {2019},
	month = {11/06/2019},
	pages = {pp 413},
	publisher = {Australian Antarctic Division},
	edition = {Australian Antarctic Division, Kingston, Tasmania, Australia},
	address = {Kingston, Tasmania, Australia},
	abstract = {<p>The deep-sea benthic ecosystems of the French Kerguelen exclusive economic zone remain poorly understood. To address benthic conservation issues, the authors recently contributed expert knowledge to guide the recent extension of the Marine Reserve of the {\textquoteleft}Terres australes fran{\c c}aises{\textquoteright}. In this new study, we propose a benthic ecoregionalisation of the northern Kerguelen Plateau based on a measurable and repeatable methodology that relies on the generalised dissimilarity modelling technique. Data of macro-epibenthic invertebrate species from the POKER 2 (2010) fish stock assessment survey have been used to compute the models. Our results allow us (i) to characterise and map benthic landscape units based on assemblages of marine invertebrates pooled by taxa and life-history traits, (ii) to highlight the environmental drivers of the spatial distribution of benthic assemblages, (iii) to assess the relevance of the CCAMLR{\textquoteright}s vulnerable marine ecosystems bioindicator taxa, and (iv) to assess the effectiveness of {\textquoteleft}strictly protected areas{\textquoteright} of the new Marine Reserve for the conservation of deep-sea benthic ecosystems.</p>
},
	keywords = {benthic ecosystems, benthos, deep-sea, ecoregionalisation, kerguelen, poker},
	url = {http://heardisland.antarctica.gov.au/__data/assets/pdf_file/0009/229158/34-Martin-FullMS.pdf},
	author = {Martin, Alexis},
	editor = {Trouslard, Emmanuelle and Hautecoeur, M{\'e}lyne and Blettery, Jonathan and Moreau, Camille and Sauc{\`e}de, Thomas and Ameziane, Nadia and Guy Duhamel and Eleaume, Marc}
}
@article {6934,
	title = {Environmental fate of chlordecone in coastal habitats: recent studies conducted in Guadeloupe and Martinique (Lesser Antilles)},
	journal = {Environmental Science and Pollution Research},
	year = {2019},
	month = {Feb-03-2019},
	issn = {0944-1344},
	doi = {10.1007/s11356-019-04661-w},
	url = {http://link.springer.com/10.1007/s11356-019-04661-w},
	author = {Charlotte R. Dromard and Devault, Damien A. and Bouchon-Navaro, Yolande and All{\'e}nou, Jean-Pierre and Budzinski, H{\'e}l{\`e}ne and Cordonnier, S{\'e}bastien and Tapie, Nathalie and Reynal, Lionel and Lemoine, Soazig and Thom{\'e}, Jean-Pierre and Thouard, Emmanuel and Monti, Dominique and Bouchon, Claude}
}
@article {6661,
	title = {Exploration during early life: distribution, habitat and orientation preferences in juvenile king penguins},
	journal = {Movement Ecology},
	volume = {7},
	year = {2019},
	month = {Jan-12-2019},
	abstract = {Background<br />
<br />
The early life of marine apex predators is poorly known, particularly for diving species. The orientation and foraging skills are presumably less developed in juveniles than in adults, especially during their first year at sea when juveniles might disperse further than adults.<br />
<br />
Methods<br />
<br />
Over two years of monitoring, we tracked the movements of 17 juvenile king penguins (Aptenodytes patagonicus,\&nbsp;~ 1 year old) using satellite relay tags from Crozet Archipelago (Southern Indian Ocean), starting when birds left their natal colony for the first time. For comparison we also tagged 6 non-breeding adults, which at that stage, similar to juveniles, are unhampered by reproductive constraints and might roam further than breeders. We used a combination of cluster analysis and habitat modelling to investigate and compare the movement patterns and habitat use of experienced (non-breeding adults) and non-experienced (juveniles) individuals.<br />
<br />
Results<br />
<br />
While juvenile penguins and non-breeding adults followed similar routes, the movements by adults started later in the season and ranged over a considerably smaller area than juveniles. Net squared displacement analysis revealed that both groups did not move to a specific wintering area. Changes in direction of juveniles in respect to their departure island were similar and synchronous for both years. Habitat models revealed that foraging behaviour was affected by environmental variables such as wind or current speeds, sea surface temperature, or oceanic productivity, for both stages. Analysis of tracks revealed that birds moved predominately perpendicular or against the main direction of the Antarctic Circumpolar Current and the prevailing wind during austral summer (juveniles only) and autumn (juveniles and non-breeding adults). However, both juveniles and adults were more likely to move against the prevailing winds if productivity increased along their trajectories.<br />
<br />
Conclusions<br />
<br />
The exceptional duration of our tracking study provided unprecedented insights into the distribution, habitat preferences and orientation of two poorly known life history stages of an expert avian diver. Our study suggests that juveniles might use both innate and learnt skills to reach profitable foraging areas during their first year at sea, which is critical in long-lived species.},
	doi = {10.1186/s40462-019-0175-3},
	url = {https://link.springer.com/article/10.1186/s40462-019-0175-3$\#$citeas},
	author = {Orgeret, F. and Clara P{\'e}ron and Enstipp, M. R. and Delord, K. and Weimerskirch, H. and Bost, C. A.}
}
@article {6869,
	title = {Fatty acids, C and N dynamics and stable isotope ratios during experimental degradation of shrimp pond effluents in mangrove water},
	journal = {Marine Environmental Research},
	volume = {150},
	year = {2019},
	month = {Jan-09-2019},
	pages = {104751},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2019.104751},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0141113619301953},
	author = {Vivier, Baptiste and Frank David and Cyril Marchand and Thanh-Nho, Nguyen and Tarik Meziane}
}
@article {6632,
	title = {Final report of the Madibenthos expedition 2016},
	year = {2019},
	abstract = {La grande exp{\'e}dition Madibenthos, men{\'e}e par le Mus{\'e}um national d{\textquoteright}Histoire naturelle, fait partie du programme d{\textquoteright}acquisition de connaissances sur le milieu marin de la Martinique (ACQUIMART), pilot{\'e} par l{\textquoteright}Agence des aires marines prot{\'e}g{\'e}es, la Direction de l{\textquoteright}Environnement de l{\textquoteright}Am{\'e}nagement et du Logement, l{\textquoteright}Office De l{\textquoteright}Eau, la Direction de la Mer et la Collectivit{\'e} Territoriale de Martinique. La connaissance du milieu naturel est le pr{\'e}alable {\`a} l{\textquoteright}identification des enjeux de gestion et de protection de celui-ci. L{\textquoteright}inventaire a pour but d{\textquoteright}enrichir les connaissances en mati{\`e}re de biodiversit{\'e} et de d{\'e}couvrir des esp{\`e}ces inconnues. Il illustre la convergence des savoirs et des savoir-faire du Mus{\'e}um national d{\textquoteright}Histoire naturelle et des besoins de protection et de valorisation du patrimoine naturel martiniquais. L{\textquoteright}ambition est de redonner leur place {\`a} toutes les composantes de la biodiversit{\'e} et permettre aux politiques de conservation de s{\textquoteright}asseoir sur des fondements plus solides et plus larges que les groupes taxonomiques traditionnellement {\'e}tudi{\'e}s (poissons, coraux{\textellipsis}). Les groupes taxonomiques principalement cibl{\'e}s sont les {\'e}ponges, les mollusques, les crustac{\'e}s, les {\'e}chinodermes, les ascidies et les algues, constituant le benthos. Sur le terrain, l{\textquoteright}exp{\'e}dition s{\textquoteright}est d{\'e}roul{\'e}e du 1er septembre au 13 octobre 2016. Les op{\'e}rations de collecte ont d{\'e}but{\'e} le 5 septembre et se sont termin{\'e}es le 10 octobre. Une soixantaine de personnes ont particip{\'e} {\`a} l{\textquoteright}exp{\'e}dition : chercheurs, {\'e}tudiants, amateurs de haut niveau ou soutien technique. Tous les types d{\textquoteright}habitats ont {\'e}t{\'e} {\'e}chantillonn{\'e}s (mangroves, fonds meubles, herbiers de phan{\'e}rogames, algueraies, communaut{\'e}s coralliennes bioconstructrices et non bioconstructrices {\textellipsis}), et ce sur les deux c{\^o}tes cara{\"\i}be et atlantique, tr{\`e}s diff{\'e}rentes. La c{\^o}te cara{\"\i}be est connue pour ses communaut{\'e}s coralliennes riches mais d{\'e}pourvues de constructions r{\'e}cifales {\`a} l{\textquoteright}exception de sa partie m{\'e}ridionale. Battue par la houle, la c{\^o}te atlantique, ou c{\^o}te {\guillemotleft} au vent {\guillemotright}, abrite quant {\`a} elle des r{\'e}cifs barri{\`e}res ou frangeants algo-coralliens, tr{\`e}s peu connus du fait de leur acc{\`e}s plus difficile. Les prospections se sont principalement concentr{\'e}es dans la tranche de 0 {\`a} 40 m{\`e}tres de profondeur. Diff{\'e}rentes m{\'e}thodes d{\textquoteright}exploration ont {\'e}t{\'e} d{\'e}ploy{\'e}es : la p{\^e}che {\`a} pied, des plong{\'e}es coupl{\'e}es {\`a} des m{\'e}thodes de pr{\'e}l{\`e}vement innovantes (paniers de brossage, aspirateur sous-marin), et le d{\'e}ploiement de petits engins de p{\^e}che (drague, nasses) pouvant aller jusqu{\textquoteright}{\`a} 100 m{\`e}tres. L{\textquoteright}objectif des ces op{\'e}rations {\'e}tait de r{\'e}colter puis de rapatrier les {\'e}chantillons au laboratoire, o{\`u} la cha{\^\i}ne de tri traite les sp{\'e}cimens vivants. Les organismes ont {\'e}t{\'e} tri{\'e}s par grands groupes zoologiques en fonction de leur taille puis photographi{\'e}s vivants, les couleurs {\'e}tant une aide essentielle {\`a} l{\textquoteright}identification. Suite {\`a} cette mission de terrain, le Mus{\'e}um a impliqu{\'e} son vaste r{\'e}seau international de sp{\'e}cialistes pour l{\textquoteright}identification des sp{\'e}cimens. L{\textquoteright}inventaire a permis de constituer des collections de r{\'e}f{\'e}rence de {\guillemotleft} nouvelle g{\'e}n{\'e}ration {\guillemotright}, incluant des collections de tissus et d{\textquoteright}ADN, banques de photos des animaux vivants et vouchers de tissus s{\'e}quenc{\'e}s. Les donn{\'e}es bancaris{\'e}es {\`a} mesure de l{\textquoteright}avancement des identifications sur les bases de donn{\'e}es nationales et internationales de biodiversit{\'e} (INPN, OBIS, GBIF). Les donn{\'e}es issues de l{\textquoteright}exp{\'e}dition ont permis et permettront ainsi d{\textquoteright}identifier les esp{\`e}ces marines pr{\'e}sentes en Martinique, de localiser les secteurs {\`a} forte diversit{\'e}, d{\textquoteright}identifier et de localiser les esp{\`e}ces rares ou encore de d{\'e}crire les communaut{\'e}s vivantes. L{\textquoteright}exp{\'e}dition Madibenthos a {\'e}galement {\'e}t{\'e} une tr{\`e}s belle occasion de communication et de sensibilisation autour de la biodiversit{\'e} marine de la Martinique. Pendant l{\textquoteright}exp{\'e}dition, pr{\`e}s d{\textquoteright}un millier d{\textquoteright}{\'e}l{\`e}ves ont {\'e}t{\'e} sensibilis{\'e}s directement au travers des actions p{\'e}dagogiques. L{\textquoteright}exp{\'e}dition a b{\'e}n{\'e}fici{\'e} 9 d{\textquoteright}une bonne couverture m{\'e}diatique. Un blog a {\'e}galement {\'e}t{\'e} tenu {\`a} jour, {\`a} la fois outils de communication et outil p{\'e}dagogique. Il reste accessible {\`a} l{\textquoteright}adresse : http://madibenthos.mnhn.fr/ A ce jour, tout le mat{\'e}riel collect{\'e} dans le cadre de Madibenthos n{\textquoteright}est pas encore pass{\'e} dans les mains de sp{\'e}cialistes. Ce rapport rend compte de l{\textquoteright}avancement du traitement des diff{\'e}rents groupes taxonmiques. Sur la base des groupes pour lesquels le travail d{\textquoteright}identification est termin{\'e}e, des premi{\`e}res analyses exploiratoires ont pu {\^e}tre men{\'e}es et sont pr{\'e}sent{\'e}es dans ce rapport. Ce travail de valorisation des donn{\'e}es de Madibenthos {\`a} destination des gestionnaires va se poursuivre {\`a} mesure que le travail des taxonomistes enrichit la base de donn{\'e}es, et {\^e}tre approfondi. Un projet en ce sens est en cours de conventionnement.},
	url = {https://hal.archives-ouvertes.fr/hal-02473023/document},
	author = {Bouchet, Philippe and Guillaume Dirberg and Laure Corbari and Leblond, Alice}
}
@article {8399,
	title = {First record of Phoxinus csikii Hank{\'o}, 1922 (Actinopterygii, Cypriniformes) in France},
	journal = {Cybium},
	volume = {43},
	year = {2019},
	pages = {199-202},
	abstract = {Une identification mol{\'e}culaire par barcoding (marqueur du COI, 651 pb) a {\'e}t{\'e} r{\'e}alis{\'e}e sur un vairon captur{\'e} dans le Rupt de Mad {\`a} Essey-et-Maizerais (bassin du Rhin/Moselle). Ainsi, ce sp{\'e}cimen appartient {\`a} l{\textquoteright}esp{\`e}ce r{\'e}cemment revalid{\'e}e Phoxinus csikii Hank{\'o}, 1922. Il s{\textquoteright}agit ainsi du premier signalement de cette esp{\`e}ce en France, et de la quatri{\`e}me esp{\`e}ce de vairon connue dans ce pays.},
	author = {Denys, Ga{\"e}l and Mann{\'e}, S{\'e}bastien}
}
@article {7837,
	title = {The first winter influences lifetime wintering decisions in a partially migrant bird},
	journal = {Animal Behaviour},
	volume = {149},
	year = {2019},
	month = {Jan-03-2019},
	pages = {23 - 32},
	issn = {00033472},
	doi = {10.1016/j.anbehav.2018.12.018},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0003347219300016},
	author = {Chambon, R{\'e}mi and G{\'e}linaud, Guillaume and Paillisson, Jean-Marc and Lemesle, Jean-Christophe and Fr{\'e}d{\'e}ric Ysnel and Dugravot, S{\'e}bastien}
}
@article {6018,
	title = {Functional divergence of thyrotropin beta-subunit paralogs gives new insights into salmon smoltification metamorphosis},
	journal = {Scientific Reports},
	volume = {9},
	year = {2019},
	pages = {4561},
	author = {Fleming, Mitchell S and Maugars, Gersende and Lafont, Anne-Gaelle and Rancon, Jocelyn and Fontaine, Romain and Nourizadeh-Lillabadi, Rasoul and Weltzien, Finn-Arne and Santidrian Yebra-Pimentel, Elena and Dirks, Ron and McCormick, Stephen D and Rousseau, Karine and Martin, Patrick and Sylvie Dufour}
}
@article {6694,
	title = {Global biogeographical regions of freshwater fish species},
	journal = {Journal of Biogeography},
	volume = {46},
	year = {2019},
	month = {Jun-11-2019},
	pages = {2407 - 2419},
	issn = {0305-0270},
	doi = {10.1111/jbi.13674},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/jbi.13674},
	author = {Leroy, Boris and Dias, Murilo S. and Giraud, Emilien and Hugueny, Bernard and J{\'e}z{\'e}quel, C{\'e}line and Leprieur, Fabien and Oberdorff, Thierry and Pablo Tedesco}
}
@article {Chevillot2019473,
	title = {Global Changes Jeopardize the Trophic Carrying Capacity and Functioning of Estuarine Ecosystems},
	journal = {Ecosystems},
	volume = {22},
	number = {3},
	year = {2019},
	note = {cited By 2},
	pages = {473-495},
	publisher = {Springer New York LLC},
	abstract = {At the interface between terrestrial and marine biomes, estuaries display high ecological productivity and provide goods and services to humans. Associated with many ecological functions, they are nursery, refuge, and growing areas for many species fish. These ecological functions and services depend on both their ecological production and trophic carrying capacity and the durability of food web functioning. These transitional key habitats undergo both strong anthropogenic pressures and climatic influences that impact the structure and dynamics of estuarine biodiversity. In this context, we explore, here, three decades of the Gironde estuary ecosystem history to detect the food web{\textquoteright}s response to global changes-induced effect on biodiversity. At least two Ecological Abrupt Shifts associated with deep modifications in the biodiversity at most trophic levels have been documented for this particular ecosystem. Three food web models were thus calibrated, one for each of the three periods discriminated by the two shifts that occurred at the end of the 1980s and the beginning of the 2000s. Results highlighted that the ecotrophic efficiency estimate for subtidal macrofauna and shrimps reached the maximum possible values during the last period. This could mean that the Gironde estuary fully reached its trophic carrying capacity due to a food limitation especially for benthos demersal fish. We also observed a significant decrease in some food web indicators (such as Average Mutual Information, System Omnivory Index, and Average Path Length) usually associated with ecosystem stress, suggesting a significant impact of global change on the Gironde estuary ecosystem health and questioning the sustainability of the ecological functions associated with this ecosystem. {\textcopyright} 2018, Springer Science+Business Media, LLC, part of Springer Nature.},
	keywords = {benthos, carrying capacity, demersal fish, ecosystem function, ecosystem health, food limitation, food web, France, Gironde Estuary, Global change, network analysis, trophic environment},
	issn = {14329840},
	doi = {10.1007/s10021-018-0282-9},
	url = {https://link.springer.com/article/10.1007/s10021-018-0282-9},
	author = {Chevillot, X. and Tecchio, S. and Chaalali, A. and Lassalle, G. and Selleslagh, J. and Castelnaud, G. and David, V. and Guy Bachelet and Nathalie Niquil and Benoit Sautour and Lobry, J.}
}
@article {6887,
	title = {High rates of apoptosis visualized in the symbiont-bearing gills of deep-sea Bathymodiolus mussels},
	journal = {PLOS ONE},
	volume = {14},
	year = {2019},
	month = {Apr-02-2019},
	pages = {e0211499},
	doi = {10.1371/journal.pone.021149910.1371},
	url = {http://dx.plos.org/10.1371/journal.pone.0211499},
	author = {Piquet, B{\'e}r{\'e}nice and Bruce Shillito and Lallier, Fran{\c c}ois H. and Duperron, S{\'e}bastien and Andersen, Ann C.},
	editor = {Rodrigues, Clara F.}
}
@article {6860,
	title = {Impacts des activit{\'e}s anthropiques sur les {\'e}cosyst{\`e}mes littoraux et marins : les mangroves du Parc National des Trois Baies {\'e}tudi{\'e}es {\`a} partir d{\textquoteright}images LANDSAT},
	journal = {Les Cahiers d{\textquoteright}Outre-Mer},
	year = {2019},
	pages = {69-95},
	author = {Joseph, C. and Franck Dolique and Saffache, P.}
}
@article {5858,
	title = {Importance of the vegetation-groundwater-stream continuum to understand transformation of biogenic carbon in aquatic systems {\textendash} A case study based on a pine-maize comparison in a lowland sandy watershed (Landes de Gascogne, {SW} France)},
	journal = {Science of The Total Environment},
	volume = {661},
	year = {2019},
	month = {apr},
	pages = {613{\textendash}629},
	doi = {10.1016/j.scitotenv.2019.01.152},
	url = {https://doi.org/10.1016/j.scitotenv.2019.01.152},
	author = {Loris Deirmendjian and Pierre Anschutz and Christian Morel and Alain Mollier and Laurent Augusto and Denis Loustau and Luiz Carlos Cotovicz and Damien Buquet and Katixa Lajaunie and Gwena{\"e}lle Chaillou and Baptiste Voltz and C{\'e}line Charbonnier and Dominique Poirier and Gwena{\"e}l Abril}
}
@conference {6682,
	title = {Important readjustments in the biomass and distribution of groundfish species in the northern part of the Kerguelen Plateau and Skiff Bank.},
	booktitle = {The Kerguelen Plateau: marine ecosystem and fisheries},
	year = {2019},
	pages = {135-184},
	publisher = {Australian Antarctic Division},
	organization = {Australian Antarctic Division},
	edition = {Welsford, D., J. Dell and G. Duhamel (Eds)},
	address = { Kingston, Tasmania, Australia.},
	isbn = {978-1-876934-30-9},
	url = {http://heardisland.antarctica.gov.au},
	author = {Guy Duhamel and Clara P{\'e}ron and Sin{\`e}gre, Romain and Charlotte Chazeau and Nicolas Gasco and M{\'e}lyne Hautecoeur and Martin, Alexis and Durand, Isabelle and Causse, Romain}
}
@article {7890,
	title = {Islet Creation Increases Nesting Opportunities of the Pied Avocet (Recurvirostra avosetta) in a Managed Salt Pan Area},
	journal = {Waterbirds},
	volume = {42},
	year = {2019},
	month = {Jan-03-2019},
	pages = {22},
	doi = {10.1675/063.042.0103},
	url = {https://bioone.org/journals/waterbirds/volume-42/issue-1/063.042.0103/Islet-Creation-Increases-Nesting-Opportunities-of-the-Pied-Avocet-Recurvirostra/10.1675/063.042.0103.full},
	author = {Chambon, R{\'e}mi and Dugravot, S{\'e}bastien and Fr{\'e}d{\'e}ric Ysnel and G{\'e}linaud, Guillaume}
}
@article {6626,
	title = {K092A and K092B, Two Peptides Isolated from the Dogfish (Scyliorhinus canicula L.), with Potential Antineoplastic Activity Against Human Prostate and Breast Cancer Cells},
	journal = {Marine Drugs},
	volume = {17},
	year = {2019},
	month = {Jan-12-2019},
	pages = {672},
	doi = {10.3390/md17120672},
	url = {https://www.mdpi.com/1660-3397/17/12/672},
	author = {Bosseboeuf, Adrien and Baron, Amandine and Duval, Elise and Aude Gautier and Pascal Sourdaine and Auvray, Pierr{\"\i}ck}
}
@article {8114,
	title = {Low-diversity bacterial microbiota in Southern Ocean representatives of lanternfish genera Electrona, Protomyctophum and Gymnoscopelus (family Myctophidae)},
	journal = {PLOS ONE},
	volume = {14},
	year = {2019},
	month = {Nov-12-2019},
	pages = {e0226159},
	doi = {10.1371/journal.pone.0226159},
	url = {https://dx.plos.org/10.1371/journal.pone.0226159},
	author = {Gallet, Alison and Koubbi, Philippe and L{\'e}ger, Nelly and Scheifler, Mathilde and Ruiz-Rodriguez, Magdalena and Suzuki, Marcelino T. and Desdevises, Yves and Duperron, S{\'e}bastien},
	editor = {Achal, Varenyam}
}
@article {6038,
	title = {Mastiglanis durantoni from French Guyana, a second species in the genus (Siluriformes: Heptapteridae), with a CT scan survey of phylogenetically-relevant characters},
	journal = {Cybium},
	volume = {43},
	year = {2019},
	pages = {125-135},
	abstract = {<p class="rtejustify">A new species of the heptapterid genus <em>Mastiglanis</em>, <em>M. durantoni</em>, is described from three adjacent localities in the upper reaches of the Maroni River in French Guyana. The new species is distinguished from the only other known species in the genus, <em>M. asopos</em>, by several qualitative and quantitative characteristics, such as the slender caudal peduncle (caudal peduncle depth 4.3-5.3\% of SL vs. 5.6-6.3\%); the upper jaw protruding markedly beyond lower, resulting in long snout (36.5-42.0\% of HL vs. 23.4-33.6\%); the head depressed (head depth 34.0-44.4\% of HL vs. 44.4-53.0\%); the procurrent caudal fin rays 12 dorsally and ventrally (vs. 14-17); the dorsal margin of adipose fin concave (vs. variably convex, straight or gently sinusoidal); the occipital process deeply notched, distally V-shaped (vs. distal margin of occipital process variably-shaped, with notch, when present, not deep and forming an obtuse angle); the mesethmoid cornu widest at its midlength (vs. gradually narrower from base to tip). Characters of taxonomic and phylogenetic relevance are observed and illustrated with CT-scan imaging technique. The narrowly endemic and outlying geographical distribution of the new species contrasts with the extremely wide range of <em>M. asopos</em> and suggests a history of peripheral isolation and differentiation. In conformity with that interpretation, the new species has some autapomorphic specializations, while none is currently known for <em>M. asopos</em>.</p>
},
	keywords = {catfish, Heptapteridae, Metaspecies, Neotropical, New species, Systematics, taxonomy},
	doi = {https://doi.org/10.26028/cybium/2019-423-002},
	author = {Pinna de, M and Philippe Keith}
}
@article {Raoux2019728,
	title = {Measuring sensitivity of two OSPAR indicators for a coastal food web model under offshore wind farm construction},
	journal = {Ecological Indicators},
	volume = {96},
	year = {2019},
	note = {cited By 2},
	pages = {728-738},
	publisher = {Elsevier B.V.},
	abstract = {A combination of modelling tools was applied to simulate the impacts of the future Courseulles-sur-mer offshore wind farm (OWF) construction (Bay of Seine, English Channel) on the ecosystem structure and functioning. To do so, food-web models of the ecosystem under three scenarios were constructed to investigate the effect caused by the OWF of added substrate (reef effect), fishing restriction (reserve effect), and their combined effect. Further, Ecological Network Analysis indices and Mean Trophic Level were derived to investigate their suitability for detecting changes in the ecosystem state. Our analysis suggests changes in the ecosystem structure and functioning after the OWF construction, the ecosystem maturity was predicted to increase, but no alterations in its overall resilience capacity. {\textcopyright} 2018 Elsevier Ltd},
	keywords = {Barium compounds, Bay of Seine, coastal zone, Ecological network analysis, Ecopath with Ecosim, ecosystem function, ecosystem structure, Ecosystems, Electric utilities, English Channel, food web, France, in situ measurement, Marine environment, Marine renewable energy, measurement method, model, Offshore wind farms, Reefs, Reserve effect, sensitivity analysis, trophic level, wind farm},
	issn = {1470160X},
	doi = {10.1016/j.ecolind.2018.07.014},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S1470160X1830534X},
	author = {Raoux, Aurore and G{\'e}raldine Lassalle and Pezy, Jean-Philippe and Samuele Tecchio and Safi, Georges and Ernande, Bruno and Maz{\'e}, C. and Le Loc{\textquoteright}h, Francois and Lequesne, Justine and Girardin, Valerie and Jean-Claude Dauvin and Nathalie Niquil}
}
@article {5865,
	title = {Microbial diversity involved in iron and cryptic sulfur cycling in the ferruginous, low-sulfate waters of Lake Pavin},
	journal = {PLOS ONE},
	volume = {14},
	year = {2019},
	month = {feb},
	pages = {e0212787},
	doi = {10.1371/journal.pone.0212787},
	url = {https://doi.org/10.1371/journal.pone.0212787},
	author = {Berg, Jasmine S. and J{\'e}z{\'e}quel, Didier and Duverger, Arnaud and Lamy, Dominique and Laberty-Robert, Christel and Miot, Jennyfer}
}
@article {8402,
	title = {Minnow, Minnow, new and old, who is the fairest of them all: the taxonomical review of the French minnows Phoxinus spp. (Actinopterygii, Leuciscidae)},
	journal = {Frontiers in Marine Science},
	volume = {6},
	year = {2019},
	month = {Jan-01-2019},
	doi = {10.3389/conf.fmars.2019.07.00102},
	url = {http://www.frontiersin.org/Community/AbstractDetails.aspx?ABS_DOI=10.3389\%2fconf.fmars.2019.07.00102},
	author = {Denys, Ga{\"e}l and Dettai, Agn{\`e}s and Persat, Henri and Hautecoeur, M{\'e}lyne and Philippe Keith}
}
@proceedings {8400,
	title = {Mitogenome Phylogeny of Thymallus (graylings) - Species delineation},
	year = {2019},
	publisher = {Frontiers in Marine Sciences},
	address = {Lausanne},
	abstract = {The genus Thymallus (grayling) is distributed over much of central and northern Europe, Asia and North America in generally cold lacustrine and riverine environments. Like all salmonid fishes, grayling have a tetraploid ancestry, which attracts research interest on the ongoing process of re-diploidiazation and its potential effects on lineage diversification. Grayling are also of increasing conservation concern, especially in Europe, as their habitats are the target of multiple anthropogenic pressures. Although in the past 15 years the recognized species diversity within the genus has increased, the genetic relationships among these species remain to a degree unexplored. The last comprehensive phylogeny of Thymallus was published prior the recognition of several new species and relies only on two mtDNA genes. At present, up to 18 species have been listed. Here we inferred the phylogeny of the genus Thymallus using complete newly sequenced mitogenomes, generated through NGS and non NGS-based techniques, as well as published sources. Using this mitogenome phylogeny as well as all available mtDNA sequences for several common genes, we applied several different species delineation methods to gain some insight into the genetic support for the current species spectrum. We combine these results with a brief overview of the systematic and taxonomic status of each species or lineage, and review as well what is known concerning their range and phenotypic variability. The results serve as an initial step in reviewing the taxonomy of the entire genus and will help point out the knowledge deficits that must be eliminated before a comprehensive picture of the grayling diversity throughout the world can be achieved.},
	author = {Secci-Petretto, Giulia and Weiss, Steven J. and Gomes-Dos-Santos, Andr{\'e} and Persat, Henri and Denys, Ga{\"e}l P.J. and Froufe, Elsa}
}
@article {6668,
	title = {Modelling the functioning of a coupled microphytobenthic-EPS-bacterial system in intertidal mudflats},
	journal = {Marine Environmental Research},
	volume = {150},
	year = {2019},
	abstract = {A mechanistic and biogeochemical model was developed to analyze the interactions between microphytobenthos (MPB), bacteria and nutrients in a tidal system. Behavioral vertical migration was hypothesized as being controlled by exogenous factors (tide and light) but also by endogenous factors (carbon and nitrogen requirements). The secretion of Extracellular Polymeric Substances (EPS) during photosynthesis (overflow metabolism) and migration of diatoms was also formulated. Similarities in MPB dynamics between observations and simulations support the assumption that carbon and nitrogen ratios are additional key processes behind the vertical migration of diatoms in the sediment. The model satisfactorily reproduced the three growth phases of the MPB development observed in a mesocosm (the lag phase, the logarithmic growth, and the plateau). Besides, nutrient availability, which could be induced by faunal bioturbation, significantly determined the extent of MPB biomass and development. The plateau phase observed in the last days of simulations appeared to be attributed to a nutrient depletion in the system, emphasizing the importance of nutrient availability. The model, although improvable especially on the formulation of the EPS excretion and bacteria development, already updated understanding of several aspects of benthic-system functioning during experimental conditions. {\textcopyright} 2019 Elsevier Ltd},
	keywords = {Bacillariophyta, bacteria, Bacteria (microorganisms), bacterial growth, bacterium, Biogeochemical modeling, biogeochemistry, Biomass, Carbon, Carbon and nitrogen, Carbon and nitrogen ratios, Diatom, diel vertical migration, exopolymer, Experimental conditions, Extracellular polymeric substances, intertidal environment, intertidal zone, light, mesocosm, microbial community, Microphytobenthos, Migration, modeling, mudflat, Nitrogen, nonhuman, Nutrient availability, Nutrients, nutritional requirement, organic carbon, organismal interaction, Photosynthesis, Phytobenthos, Phytoplankton, polymer, Review, simulation, tide, vertical migration},
	issn = {01411136},
	doi = {10.1016/j.marenvres.2019.104754},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0141113619300704},
	author = {Rakotomalala, C and Katell Guizien and Karine Granger{\'e} and S{\'e}bastien Lefebvre and Christine Dupuy and Francis Orvain}
}
@article {5956,
	title = {Morphological and histological study of the scales of the grey notothen, Lepidonotothen squamifrons (Gunther 1880) (Nototheniidae; Perciformes; Teleostei)},
	journal = {Cybium},
	volume = {43},
	year = {2019},
	pages = {097-101},
	doi = {10.26028/cybium/2019-431-009},
	url = {http://sfi-cybium.fr/fr/morphological-and-histological-study-scales-grey-notothen-lepidonotothen-squamifrons-g{\"u}nther-1880},
	author = {Lecomte, F and Fran{\c c}ois J Meunier and Guy Duhamel}
}
@article {8156,
	title = {Morphological and molecular criteria allow the identification of putative germ stem cells in a lophotrochozoan, the Pacific oyster Crassostrea gigas},
	journal = {Histochemistry and cell biology},
	volume = {151},
	year = {2019},
	pages = {419-433},
	author = {Cherif Feildel Maeva and Kellner Kristell and Goux Didier and Elie Nicolas and Adeline Beatrice and Heude Berthelin Clothilde}
}
@article {8397,
	title = {Morphological traits allow distinguishing their hybrids from the Northern pike, Esox lucius, and the Aquitanian pike, Esox aquitanicus (Actinopterygii, Esociformes)},
	journal = {Cybium},
	volume = {43},
	year = {2019},
	pages = {227-232},
	abstract = {Le brochet aquitain Esox aquitanicus Denys, Dettai, Persat, Hautecoeur \&amp; Keith, 2014 est une esp{\`e}ce end{\'e}mique du Sud-Ouest de la France. Il est menac{\'e} par l{\textquoteright}hybridation avec le brochet commun Esox lucius Linnaeus, 1758. Jusqu{\textquoteright}{\`a} pr{\'e}sent, seul l{\textquoteright}outil mol{\'e}culaire permettait la d{\'e}termination des hybrides. Le but de cette {\'e}tude est de trouver des caract{\`e}res morphologiques pour caract{\'e}riser les hybrides des deux esp{\`e}ces parentales {\`a} partir des trois crit{\`e}res distinguant l{\textquoteright}E. aquitanicus de l{\textquoteright}E. lucius : le patron de coloration du corps, le nombre d{\textquoteright}{\'e}cailles sur la ligne lat{\'e}rale et la longueur du museau. Nos r{\'e}sultats ont d{\'e}montr{\'e} que les sp{\'e}cimens hybrides pouvaient {\^e}tre discrimin{\'e}s d{\textquoteright}E. lucius par un museau plus court et un plus faible nombre d{\textquoteright}{\'e}cailles sur la ligne lat{\'e}rale, et d{\textquoteright}E. aquitanicus seulement par un plus grand nombre d{\textquoteright}{\'e}cailles sur la ligne lat{\'e}rale. Le patron de coloration du corps des deux esp{\`e}ces est rencontr{\'e} chez les hybrides. Ainsi, le meilleur caract{\`e}re pour identifier les hybrides est le nombre d{\textquoteright}{\'e}cailles sur la ligne lat{\'e}rale ; il est interm{\'e}diaire compar{\'e} aux esp{\`e}ces parentales (114 {\`a} 119 vs. 104 {\`a} 107 pour E. aquitanicus et (115)120 {\`a} 136(146) pour E. lucius). Il sera utile pour les gestionnaires en conservation du brochet aquitain. N{\'e}anmoins, les r{\'e}sultats de cette {\'e}tude n{\'e}cessitent d{\textquoteright}{\^e}tre confirm{\'e}s avec un plus grand {\'e}chantillonnage en aquaculture.},
	author = {Jeanroy, Clara and Denys, Ga{\"e}l}
}
@article {6663,
	title = {Multi-trace-element sea surface temperature coral reconstruction for the southern Mozambique Channel reveals teleconnections with the tropical Atlantic},
	journal = {Biogeosciences},
	volume = {16},
	year = {2019},
	pages = {695-712},
	abstract = {Here we report seasonally resolved sea surface temperatures for the southern Mozambique Channel in the SW Indian Ocean based on multi-trace-element temperature proxy records preserved in two Porites sp. coral cores. Particularly, we assess the suitability of both separate and combined Sr/Ca and Li/Mg proxies for improved multi-element SST reconstructions. Overall, geochemical records from Europa Island Porites sp. highlight the potential of Sr/Ca and Li/Mg ratios as high-resolution climate proxies but also show significant differences in their response at this Indian Ocean subtropical reef site. Our reconstruction from 1970 to 2013 using the Sr/Ca SST proxy reveals a warming trend of 0.58 {\textpm} 0.1 {\textbullet} C in close agreement with instrumental data (0.47 {\textpm} 0.07 {\textbullet} C) over the last 42 years (1970-2013). In contrast, the Li/Mg showed unrealistically large warming trends, most probably caused by uncertainties around different uptake mechanisms of the trace elements Li and Mg and uncertainties in their temperature calibration. In our study, Sr/Ca is superior to Li/Mg to quantify absolute SST and relative changes in SST. However, spatial correlations between the combined detrended Sr/Ca and Li/Mg proxies compared to instrumental SST at Europa revealed robust correlations with local climate variability in the Mozambique Channel and teleconnections to regions in the Indian Ocean and southeastern Pacific where surface wind variability appeared to dominate the underlying pattern of SST variability. The strongest correlation was found between our Europa SST reconstruction and instrumental SST records from the northern tropical Atlantic. Only a weak correlation was found with ENSO, with recent warm anomalies in the geochemical proxies coinciding with strong El Ni{\~n}o or La Ni{\~n}a. We identified the Pacific-North American (PNA) atmospheric pattern , which develops in the Pacific in response to ENSO, and the tropical North Atlantic SST as the most likely causes of the observed teleconnections with the Mozambique Channel SST at Europa.},
	keywords = {Anthozoa, Atlantic Ocean, Atlantic Ocean (North), Atlantic Ocean (Tropical), climate variation, coral, El Nino, El Nino-Southern Oscillation, Europa Island, Indian Ocean, La Nina, Mascarene Islands, Mozambique Channel, Pacific Ocean, Pacific Ocean (Southeast), Porites, proxy climate record, reconstruction, Reunion, sea surface temperature, subtropical region, surface wind, teleconnection, trace element},
	issn = {17264170},
	doi = {10.5194/bg-16-695-2019},
	url = {https://www.biogeosciences.net/16/695/2019/},
	author = {Zinke, J. and D{\textquoteright}Olivo, J.P. and Gey, C.J. and McCulloch, M.T. and Henrich J Bruggemann and Lough, J.M. and Mireille M.M. Guillaume}
}
@article {6932,
	title = {Partitioning of food resources among three sympatric scorpionfish (Scorpaeniformes) in coastal waters of the northern Yellow Sea},
	journal = {Hydrobiologia},
	volume = {826},
	year = {2019},
	month = {Jan-01-2019},
	pages = {331 - 351},
	issn = {0018-8158},
	doi = {10.1007/s10750-018-3747-0},
	url = {http://link.springer.com/10.1007/s10750-018-3747-0},
	author = {Wu, Zhongxin and Zhang, Xiumei and Charlotte R. Dromard and Tweedley, James R. and Loneragan, Neil R.}
}
@article {5954,
	title = {The phylogenetic origin and evolution of acellular bone in teleost fishes: insights into osteocyte function in bone metabolism},
	journal = {Biological Reviews},
	year = {2019},
	abstract = {<p>ABSTRACT Vertebrate bone is composed of three main cell types: osteoblasts, osteoclasts and osteocytes, the latter being by far the most numerous. Osteocytes are thought to play a fundamental role in bone physiology and homeostasis, however they are entirely absent in most extant species of teleosts, a group that comprises the vast majority of bony {\textquoteleft}fishes{\textquoteright}, and approximately half of vertebrates. Understanding how this acellular (anosteocytic) bone appeared and was maintained in such an important vertebrate group has important implications for our understanding of the function and evolution of osteocytes. Nevertheless, although it is clear that cellular bone is ancestral for teleosts, it has not been clear in which specific subgroup the osteocytes were lost. This review aims to clarify the phylogenetic distribution of cellular and acellular bone in teleosts, to identify its precise origin, reversals to cellularity, and their implications. We surveyed the bone type for more than 600 fossil and extant ray-finned fish species and optimised the results on recent large-scale molecular phylogenetic trees, estimating ancestral states. We find that acellular bone is a probable synapomorphy of Euteleostei, a group uniting approximately two-thirds of teleost species. We also confirm homoplasy in these traits: acellular bone occurs in some non-euteleosts (although rarely), and cellular bone was reacquired several times independently within euteleosts, in salmons and relatives, tunas and the opah (Lampris sp.). The occurrence of peculiar ecological (e.g. anadromous migration) and physiological (e.g. red-muscle endothermy) strategies in these lineages might explain the reacquisition of osteocytes. Our review supports that the main contribution of osteocytes in teleost bone is to mineral homeostasis (via osteocytic osteolysis) and not to strain detection or bone remodelling, helping to clarify their role in bone physiology.</p>
},
	keywords = {acellular bone, Actinopterygii, ancestral state reconstruction, anosteocytic bone, bone remodelling, endothermy, osteocyte, Salmoniformes, Scombridae, teleostei},
	doi = {10.1111/brv.12505},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/brv.12505},
	author = {Davesne, Donald and Fran{\c c}ois J Meunier and Schmitt, Armin D. and Friedman, Matt and Otero, Olga and Benson, Roger B. J.}
}
@article {6635,
	title = {A Potential Antineoplastic Peptide of Human Prostate Cancer Cells Derived from the Lesser Spotted Dogfish (Scyliorhinus canicula L.)},
	journal = {Marine Drugs},
	volume = {17},
	year = {2019},
	month = {Jan-10-2019},
	pages = {585},
	doi = {10.3390/md17100585},
	url = {https://www.mdpi.com/1660-3397/17/10/585},
	author = {Bosseboeuf, Adrien and Baron, Amandine and Duval, Elise and Aude Gautier and Pascal Sourdaine and Auvray, Pierr{\"\i}ck}
}
@article {5929,
	title = {Resurrection of Caridina natalensis De Man, 1908 (Crustacea: Decapoda: Atyidae) in the South Western Indian Ocean},
	journal = {Zootaxa},
	volume = {4543},
	year = {2019},
	pages = {375-387},
	abstract = {<p>Numerous specimens of a freshwater shrimp with small eggs belonging to the Caridina nilotica complex collected in the South Western Indian Ocean were studied and compared with recent and old collection specimens genetically (16S mito-chondrial analysis for recent and type specimens) and morphologically. The results revealed that, in the Indian Ocean, what has been identified by several authors under various species names of the complex C. nilotica, was in fact C. natal-ensis De Man, 1908. This valid species is re-described and compared with closely related species, often confused with it in this area: C. brachydactyla De Man, 1908, C. brevidactyla Roux, 1920, C. gracilipes De Man, 1892 and C. longirostris H. Milne Edwards, 1837.</p>
},
	keywords = {16S, Caridina, Comoros, Integrative taxonomy, Madagascar, Mayotte, morphology, Seychelles, South Africa},
	author = {de Mazancourt, Valentin and Mlambo, MC and Castelin, Magalie and Renneville, C and Marquet, G{\'e}rard and Philippe Keith}
}
@article {6040,
	title = {Revision of freshwater shrimps belonging to Caridina weberi complex (Crustacea: Decapoda: Atyidae) from Polynesia with discussion on their biogeography},
	journal = {Journal of Natural History},
	volume = {53},
	year = {2019},
	pages = {815{\textendash}847},
	abstract = {<p class="rtejustify"><em>Caridina weberi</em>, an emblematic species of the {\textquoteleft}<em>C. weberi </em>complex{\textquoteright}, was described by De Man in 1892 from different localities in Indonesia. Until now, this species was thought to have a wide distribution in Polynesia. Numerous specimens identified as <em>C. weberi</em> were collected recently from various Polynesian islands. In the context of integrative taxonomy, they were morphologically and genetically studied. Three new species allied to <em>C. weberi</em> are here described: <em>C. marquesensis</em> n. sp., <em>C. futunensis</em> n. sp. and <em>C. tupaia</em> n. sp. The occurrence of <em>C. rapaensis</em>, another species part of the {\textquoteleft}<em>C. weberi{\textquoteright}</em> complex is confirmed. Descriptions or redescription of these species are given as well as their geographical and ecological distributions. The position of these species in the complex is clarified. A key is provided to facilitate identification.</p>
},
	keywords = {16S, freshwater shrimp, genetic, Integrative taxonomy, morphology},
	doi = {https://doi.org/10.1080/00222933.2019.1612959},
	author = {de Mazancourt, Valentin and Marquet, G{\'e}rard and Philippe Keith}
}
@article {7041,
	title = {Revisiting species boundaries and distribution ranges of Nemacheilus spp. (Cypriniformes: Nemacheilidae) and Rasbora spp. (Cypriniformes: Cyprinidae) in Java, Bali and Lombok through DNA barcodes: implications for conservation in a biodiversity hotspot},
	journal = {Conservation Genetics},
	volume = {20},
	year = {2019},
	month = {Jan-06-2019},
	pages = {517 - 529},
	abstract = {Biodiversity hotspots have provided useful geographic proxies for conservation efforts. Delineated from a few groups of
animals and plants, biodiversity hotspots do not reflect the conservation status of freshwater fishes. With hundreds of new
species described on a yearly basis, fishes constitute the most poorly known group of vertebrates. This situation urges for an
acceleration of the fish species inventory through fast and reliable molecular tools such as DNA barcoding. The present study
focuses on the freshwater fishes diversity in the Sundaland biodiversity hotspot in Southeast Asia. Recent studies evidenced
large taxonomic gaps as well as unexpectedly high levels of cryptic diversity, particularly so in the islands of Java and Bali.
The Cypriniformes genera Rasbora and Nemacheilus account for most of the endemic species in Java and Bali, however their
taxonomy is plagued by confusion about species identity and distribution. This study examines the taxonomic status of the
Rasbora and Nemacheilus species in Java, Bali and Lombok islands through DNA barcodes, with the objective to resolve
taxonomic confusion and identify trends in genetic diversity that can be further used for conservation matters. Several species
delimitation methods based on DNA sequences were used and confirmed the status of most species, however several cases
of taxonomic confusion and two new taxa are detected. Mitochondrial sequences argue that most species range distributions
currently reported in the literature are inflated due to erroneous population assignments to the species level, and further
highlight the sensitive conservation status of most Rasbora and Nemacheilus species on the islands of Java, Bali and Lombok.},
	keywords = {Conservation genetics, Cryptic diversity, Population fragmentation, Southeast Asia, taxonomy},
	issn = {1566-0621},
	doi = {10.1007/s10592-019-01152-w},
	url = {http://link.springer.com/10.1007/s10592-019-01152-w},
	author = {Hubert, Nicolas and Lumbantobing, Daniel and Sholihah, Arni and Dahruddin, Hadi and Delrieu-Trottin, Erwan and Busson, Frederic and Sauri, Sopian and Hadiaty, Renny and Philippe Keith}
}
@article {6107,
	title = {Seasonal oxygen isotope variations in freshwater bivalve shells as recorders of Amazonian rivers hydrogeochemistry},
	journal = {Isotopes in Environmental and Health Studies},
	year = {2019},
	pages = {1-15},
	type = {Journal Article},
	abstract = {<p>Freshwater bivalve shell oxygen isotope values (δ<sup>18</sup>O<sub>S</sub>) may act as a recorder of river δ<sup>18</sup>O variations that can then be interpreted in terms of hydrology (e.g. precipitation{\textendash}evaporation balance, precipitation and river discharge patterns). We investigated the potential of this proxy measured across the hinge of South American unionid shells: <em>Anodontites elongatus</em> collected in Peru and <em>A. trapesialis</em> in Brazil. The isotopic signatures were reproducible between individuals of the same species. <em>A. trapesialis</em> clearly showed a strong δ<sup>18</sup>O<sub>S</sub> cyclicity in accordance with its growth patterns while <em>A. elongatus</em> presented less clear δ<sup>18</sup>O<sub>S</sub> with lower amplitude. We confirm that the deposition of successive growth lines and increments is annual, with growth line corresponding to the wet season. Also, we suggest that low amplitude of δ<sup>18</sup>O<sub>S</sub> in the<em> A. elongatus</em> shells indicates a habitat close to the river while large amplitude of δ<sup>18</sup>O<sub>S</sub> cycles observed in<em> A. trapesialis </em>shells would reflect a floodplain lake habitat, seasonally disconnected from the river and thus subjected to higher seasonal fluctuations in water δ<sup>18</sup>O. Considering these promising first results, future studies could be directed towards the use of fossil shells to reconstruct the past and present hydrological and geochemical conditions of the Amazon.</p>
},
	keywords = {Amazon basin, freshwater bivalve shells, hydroclimate, isotope ecology, isotope hydrology, oxygen isotopes},
	issn = {1025-6016 1477-2639},
	doi = {10.1080/10256016.2019.1666120},
	url = {https://hal.archives-ouvertes.fr/hal-02314885v1},
	author = {Gaillard, Blandine and Claire E. Lazareth and Lestrelin, Hugo and Dufour, Elise and Santos, Roberto V. and Carlos E.C. Freitas and Marc Pouilly}
}
@proceedings {6684,
	title = {Shark bycatch observed in the bottom longline fishery off the Kerguelen islands in 2006-2016, with a focus on Etmopterus viator},
	year = {2019},
	month = {2019},
	publisher = {Australian Antarctic Division},
	edition = {Welsford, D., J. Dell and G. Duhamel (Eds)},
	address = {Kingston, Tasmania, Australia},
	author = {Charlotte Chazeau and S.P. Igl{\'e}sias and Clara P{\'e}ron and Nicolas Gasco and Martin, Alexis and Guy Duhamel}
}
@article {7036,
	title = {Shedding light on the migratory patterns of the Amazonian goliath catfish, <i>Brachyplatystoma platynemum</i>               , using otolith <sup>87</sup>               Sr/ <sup>86</sup>               Sr analyses},
	journal = {Aquatic Conservation: Marine and Freshwater Ecosystems},
	volume = {29},
	year = {2019},
	month = {Aug-03-2020},
	pages = {397 - 408},
	issn = {1052-7613},
	doi = {10.1002/aqc.v29.310.1002/aqc.3046},
	url = {https://onlinelibrary.wiley.com/toc/10990755/29/3},
	author = {Hauser, Marilia and Doria, Carolina R.C. and Santos, Roberto V. and Garc{\'\i}a-Vasquez, Aurea and Marc Pouilly and Pecheyran, Christophe and Ponzevera, Emmanuel and Torrente-Vilara, Gislene and B{\'e}rail, Sylvain and Panfili, Jacques and Darnaude, Audrey and Renno, Jean-Fran{\c c}ois and Garc{\'\i}a-D{\'a}vila, Carmen and Jesus Nu{\~n}ez-Rodriguez and Ferraton, Franck and Vargas, Gladys and Duponchelle, Fabrice}
}
@article {7103,
	title = {Shedding light on the migratory patterns of the Amazonian goliath catfish, Brachyplatystoma platynemum, using otolith 87Sr/86Sr analyses},
	journal = {Aquatic Conservation: Marine and Freshwater Ecosystems},
	volume = {29},
	year = {2019},
	pages = {397{\textendash}408},
	doi = {doi.org/10.1002/aqc.3046},
	url = {https://onlinelibrary.wiley.com/doi/full/10.1002/aqc.3046},
	author = {Hauser, Marilia and Doria, Carolina RC and Santos, Roberto V and Garc{\'\i}a-Vasquez, Aurea and Marc Pouilly and Pecheyran, Christophe and Ponzevera, Emmanuel and Torrente-Vilara, Gislene and B{\'e}rail, Sylvain and Panfili, Jacques and others}
}
@article {5984,
	title = {Short-term changes in the quality of suspended particulate matter in a human impacted and mangrove dominated tropical estuary (Can Gio, Vietnam)},
	journal = {Continental Shelf Research },
	volume = {178},
	year = {2019},
	month = {01/05/2019},
	pages = {59-67},
	abstract = {<p>Suspended particulate matter (SPM) is a key component of coastal food webs and a key variable of nutrient budgets. Understanding its variability across short time scales in estuaries may help ecologists understand seasonal and diurnal migration of estuarine organisms, and answer how their nutritional requirements are fulfilled. It may also inform biogeochemists regarding the factors that influence import and export of nutrients between terrestrial and coastal ecosystems. This study aimed to link the dynamics of fatty acids, stable isotopes (δ13C and δ15N) and C/N ratios of SPM, revealing organic matter quality, to rapidly varying factors (SPM concentration, salinity and presence of daylight) and comparing this variability to the seasonal variation induced by the alternation of dry and wet seasons in the studied region. Our results revealed that these rapidly varying factors had a strong influence on the bacterial and the phytoplanktonic compartments of SPM. They suggest that tidally resuspended particles are the site of intense heterotrophic activity and that estuarine phytoplankton store lipids during the daytime up to substantially modifying SPM quality. Our study also shows higher freshness of SPM during the wet season. We expect this study to raise the interest of both biologists and biogeochemists to introduce daily variability of SPM in food webs and nutrient budgets modelling.</p>
},
	doi = {10.1016/j.csr.2019.03.011},
	author = {Frank David and Cyril Marchand and Najet Thiney and Tran-thi, N and Tarik Meziane}
}
@article {5868,
	title = {Sources and sinks of dissolved inorganic carbon in an urban tropical coastal bay revealed by δ13C-DIC signals},
	journal = {Estuarine, Coastal and Shelf Science},
	year = {2019},
	author = {L.C. CotoviczJr and Knoppers, Bastiaan A and Deirmendjian, Loris and Gwena{\"e}l Abril}
}
@article {6687,
	title = {Spontaneous recovery of functional diversity and rarity of ground-living spiders shed light on the conservation importance of recent woodlands},
	journal = {Biodiversity and Conservation},
	volume = {28},
	year = {2019},
	month = {Jan-03-2019},
	pages = {687 - 709},
	issn = {0960-3115},
	doi = {10.1007/s10531-018-01687-3},
	url = {http://link.springer.com/10.1007/s10531-018-01687-3},
	author = {Morel, Lo{\"\i}s and Dujol, Beno{\^\i}t and Courtial, Cyril and Vasseur, Manon and Leroy, Boris and Fr{\'e}d{\'e}ric Ysnel}
}
@article {6662,
	title = {Temperature patterns and mechanisms influencing coral bleaching during the 2016 El Ni{\~n}o},
	journal = {Nature Climate Change},
	volume = {9},
	year = {2019},
	pages = {845-851},
	abstract = {Under extreme heat stress, corals expel their symbiotic algae and colour (that is, {\textquoteleft}bleaching{\textquoteright}), which often leads to widespread mortality. Predicting the large-scale environmental conditions that reinforce or mitigate coral bleaching remains unresolved and limits strategic conservation actions1,2. Here we assessed coral bleaching at 226 sites and 26 environmental variables that represent different mechanisms of stress responses from East Africa to Fiji through a coordinated effort to evaluate the coral response to the 2014{\textendash}2016 El Ni{\~n}o/Southern Oscillation thermal anomaly. We applied common time-series methods to study the temporal patterning of acute thermal stress and evaluated the effectiveness of conventional and new sea surface temperature metrics and mechanisms in predicting bleaching severity. The best models indicated the importance of peak hot temperatures, the duration of cool temperatures and temperature bimodality, which explained 50\% of the variance, compared to the common degree-heating week temperature index that explained only 9\%. Our findings suggest that the threshold concept as a mechanism to explain bleaching alone was not as powerful as the multidimensional interactions of stresses, which include the duration and temporal patterning of hot and cold temperature extremes relative to average local conditions. {\textcopyright} 2019, The Author(s), under exclusive licence to Springer Nature Limited.},
	keywords = {Algae, Anthozoa},
	issn = {1758678X},
	doi = {10.1038/s41558-019-0576-8},
	url = {https://www.nature.com/articles/s41558-019-0576-8},
	author = {McClanahan, T.R. and Darling, E.S. and Maina, J.M. and Muthiga, N.A. and D{\textquoteright}agata, S. and Jupiter, S.D. and Arthur, R. and Wilson, S.K. and Mangubhai, S. and Nand, Y. and Ussi, A.M. and Humphries, A.T. and Patankar, V.J. and Mireille M.M. Guillaume and Philippe Keith and Shedrawi, G. and Julius, P. and Grimsditch, G. and Ndagala, J. and Leblond, J.}
}
@article {8396,
	title = {A third European species of grayling (Actinopterygii, Salmonidae), endemic to the Loire River basin (France), Thymallus ligericus n. sp.},
	journal = {Cybium},
	volume = {43},
	year = {2019},
	pages = {233-238},
	abstract = {Loire grayling was already known to belong to a distinct lineage, compared to other European population, according to molecular data (enzymatic polymorphism, mtDNA sequencing and microsatellites). In this paper, we consider this lineage as a new species, Thymallus ligericus n. sp., which is endemic to the Loire drainage (France). Compared with the other species, T. ligericus n. sp. is characterized by a more elongated body, the presence of a pointed snout and a strait or convex snout profile, a more inferior mouth with a transversal aperture and a fleshier upper lip, usually more than 50 to several hundreds black dots on the flanks, a shorter head (20.0-23.7\% SL), smaller occipital and orbital depths of the head (54.8-71.7\% HL and 43.5-53.4\% HL, respectively) and a shorter horizontal eye diameter (22.6-26.3\% HL).},
	author = {Persat, Henri and Weiss, Steven J. and Froufe, Elsa and Secci-Petretto, Giulia and Denys, Ga{\"e}l}
}
@article {8985,
	title = {Three-dimensional structural evolution of the cuttlefish Sepia officinalis shell from embryo to adult stages},
	journal = {Journal of the Royal Society Interface},
	volume = {16},
	year = {2019},
	pages = {20190175},
	doi = {10.1098/rsif.2019.0175},
	url = {https://hal.archives-ouvertes.fr/hal-02318453},
	author = {Le Pabic, Charles and Derr, Julien and Luquet, Gilles and Pascal Jean Lopez and Laure Bonnaud-Ponticelli}
}
@article {6470,
	title = {Tissue-Specific Biomarker Responses in the Blue Mussel Mytilus spp. Exposed to a Mixture of Microplastics at Environmentally Relevant Concentrations},
	journal = {Frontiers in Environmental Science},
	volume = {7},
	year = {2019},
	month = {Sep-03-2020},
	abstract = {The impact of a microplastic (MP) mixture composed of polyethylene (PE) and polypropylene (PP) plastic particles, prepared from commercially available products, was evaluated in blue mussels Mytilus spp. exposed to three environmentally relevant concentrations: 0.008 μg L-1 (low), 10 μg L-1 (medium), and 100 μg L-1 (high). Organisms were exposed for 10 days followed by 10 days of depuration in clean seawater under controlled laboratory conditions. The evaluation of MP effects on mussel clearance rate, tissue structure, antioxidant defenses, immune and digestive parameters, and DNA integrity were investigated while the identification of plastic particles in mussel tissues (gills, digestive gland, and remaining tissues), and biodeposits (feces and pseudofaeces) was performed using infrared microscopy (μFT-IR). Results showed the presence of MPs only in the digestive gland of mussels exposed to the highest tested concentration of MPs with a mean of 0.75 particle/mussel (after the 10 days of exposure). In biodeposits, PE and PP particles were detected following exposure to all tested concentrations confirming the ingestion of MPs by the organisms. A differential response of antioxidant enzyme activities between digestive gland and gills was observed. Significant increases in superoxide dismutase (SOD) and catalase (CAT) activities were measured in the digestive gland of mussels exposed to the low (0.008 μg L-1) and medium (10 μg L-1) concentrations ofMPs and in the gills frommussels exposed to the highest concentration (100 μg L-1) of MPs that could be indicative of a change in the redox balance. Moreover, an increase in acid phosphatase activity was measured in hemolymph of mussels exposed to 0.008 and 10 μg L-1 concentrations. No significant difference was observed in the clearance rate, and histopathological parameters between control and exposed mussels. This study brings new insights on the potential sublethal impacts of MPs at environmentally relevant concentrations in marine bivalves.},
	keywords = {biomarkers, microplastics, Mytilus, oxidative stress, polyethylene, polypropylene},
	doi = {10.3389/fenvs.2019.00033},
	url = {https://www.frontiersin.org/article/10.3389/fenvs.2019.00033},
	author = {Revel, Messika and Lagarde, Fabienne and Perrein-Ettajani, Hanane and Bruneau, M{\'e}lanie and Akcha, Farida and Sussarellu, Rossana and Rouxel, Julien and Katherine Costil and Decottignies, Priscilla and Cognie, Bruno and Ch{\^a}tel, Am{\'e}lie and Mouneyrac, Catherine}
}
@article {5769,
	title = {Trophic relationships and basal resource utilisation in the Can Gio Mangrove Biosphere Reserve (Southern Vietnam)},
	journal = {Journal of Sea Research},
	year = {2019},
	abstract = {<p class="rtejustify">Abstract Fatty acid biomarkers and dual stable isotopes (δ13C and δ15N) were used to identify the preferred food sources of consumers in a mangrove tidal creek and nearby unforested (mud bank) and forested areas located in the Can Gio Mangrove Biosphere Reserve (Southern Vietnam). We analysed 15 macro-invertebrates and 1 fish species representing primary consumers and their immediate predators in this area. Specific groups of fatty acids were used to trace the fate of various food sources (i.e., suspended particulate organic matter, mangrove litter and sedimentary organic matter). The δ13C and δ15N of consumers ranged from -26.9 to -18.8{\textperthousand} and from 1.1 to 9.9{\textperthousand}, respectively. The trophic pathway based on mangrove litter, characteristic of mangrove ecosystems, is nutritionally sustaining various crab and snail species. In contrast, it appears that the most mobile species (fish and shrimps), living in the water column and possibly migrating with tides, are mostly feeding on suspended particulate organic matter, suggesting that this trophic pathway is of great importance for connectivity among tropical coastal ecosystems. Our study suggests that snails and crabs mainly act as mineralisers, processing high quantities of detrital material to meet their nutritional needs and thus releasing nutrients through the production of faeces, that are further mineralised by microorganisms, while locally grown phytoplankton reintegrates these compounds into its biomass and feeds migrating species. We highlight here a possible link between mangrove litter and coastal food webs.</p>
},
	doi = {10.1016/j.seares.2018.12.006},
	url = {https://www.sciencedirect.com/science/article/pii/S1385110118301679},
	author = {Frank David and Cyril Marchand and Nguyen, Thanh-Nho and Pierre Taillardat and Tarik Meziane}
}
@article {8395,
	title = {Une nouvelle esp{\`e}ce de poisson en Bourgogne-Franche-Comt{\'e} : le goujon occitan (Gobio occitaniae)},
	journal = {Revue scientifique Bourgogne-Franche-Comt{\'e} Nature},
	volume = {30-2019},
	year = {2019},
	pages = {78-79},
	author = {Denys, Ga{\"e}l and Besson, Sylvain}
}
@article {Safi2019116,
	title = {Vitamine ENA: A framework for the development of ecosystem-based indicators for decision makers},
	journal = {Ocean and Coastal Management},
	volume = {174},
	year = {2019},
	note = {cited By 5},
	pages = {116-130},
	publisher = {Elsevier Ltd},
	abstract = {The Water Framework Directive (article 2, paragraph 21) as well as the Marine Strategy Framework Directive (MSFD, Descriptor 4) stress the need for assessing the quality of the structure and the functioning of ecosystems. The MSFD also underlines the urgent need for development, testing, and validation of ecosystem state indicators. Holistic function-based criteria and indicators as provided by Ecological Network Analysis (ENA) could be used to define and assess the {\textquoteleft}Good Environmental Status{\textquoteright} of marine ecosystems. This approach also feeds Ecosystem Based Management (EBM). ENA generally analyses the fluxes{\textquoteright} quality of a single medium such as here the carbon fluxes in a food web and produces a number of useful metrics that indicate, inter alia, the total carbon flow through the system, the quality of the functioning of the system or the trophic efficiency of system. A short list of indices [i.e. Detritivory over Herbivory ratio (D/H), Connectance Index (CI), Transfer Efficiency (TE) over trophic levels, System Omnivory Index (SOI), Finn{\textquoteright}s Cycling Index (FCI), relative Redundancy (R/DC), Average Mutual Information (AMI) and Interaction Strength (IS)] is proposed for practical use. This paper presents a first framework for OSPAR Regional Sea Convention food web indicators based on ENA. These are presented here focusing on their applicability and what is needed for implementation, illustrating their potential use by case studies. {\textcopyright} 2019 Elsevier Ltd},
	keywords = {Average mutual information, Carbon, Carbon flux, Criteria and indicators, Decision making, Ecological network analysis, ecosystem function, ecosystem management, ecosystem structure, Ecosystem-based management, Ecosystems, Efficiency, environmental indicator, Environmental management, Environmental regulations, food web, Good environmental status, holistic approach, Interaction strength, marine ecosystem, Marine pollution, Marine strategy framework directives, Water conservation, Water Framework Directives},
	issn = {09645691},
	doi = {10.1016/j.ocecoaman.2019.03.005},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S096456911830591X},
	author = {Safi, Georges and Giebels, D. and Arroyo, N.-L. and Heymans, J.J. and Preciado, I and Raoux, Aurore and Sch{\"u}ckel, U. and Samuele Tecchio and de Jonge, V.N. and Nathalie Niquil}
}
@article {5406,
	title = {Adhesive gland transcriptomics uncovers a diversity of genes involved in glue formation in marine tube-building polychaetes},
	journal = {Acta Biomaterialia},
	year = {2018},
	abstract = {<p class="rtejustify">Tube-building sabellariid polychaetes are hermatypic organisms capable of forming vast reefs in highly turbulent marine habitats. Sabellariid worms assemble their tube by gluing together siliceous and calcareous clastic particles using a polyelectrolytic biocement. Here, we performed transcriptomic analyses to investigate the genes that are differentially expressed in the parathorax region, which contains the adhesive gland and tissues, from the rest of the body. We found a large number of candidate genes to be involved in the composition and formation of biocement in two species: Sabellaria alveolata and Phragmatopoma caudata. Our results indicate that the glue is likely to be composed by a large diversity of cement-related proteins, including Poly(S), GY-rich, H-repeat and miscellaneous categories. However, sequences divergence and differences in expression profiles between S. alveolata and P. caudata, of cement-related proteins may reflect adaptation to the type of substratum used to build their tube, and/or to their habitat (temperate vs tropical, amplitude of pH, salinity ...). Related to the L-DOPA metabolic pathways and linked with the genes that were differentially expressed in the parathorax region, we found that tyrosinase and peroxidase gene families may have undergone independent expansion in the two Sabellariidae species investigated. Our data also reinforce the importance of protein modifications in cement formation. Altogether these new genomic resources help to identify novel transcripts encoding for cement-related proteins, but also important enzymes putatively involved in the chemistry of the adhesion process, such as kinases, and may correspond to new targets to develop biomimetic approaches.</p>
},
	doi = {doi.org/10.1016/j.actbio.2018.03.037},
	author = {Jean-Philippe Buffet and Erwan Corre and Evelyne Duvernois-Berthet and J{\'e}r{\^o}me Fournier and Pascal Jean Lopez}
}
@article {5630,
	title = {Age and growth of the Amazonian migratory catfish Brachyplatystoma rousseauxii in the Madeira River basin before the construction of dams},
	journal = {Neotropical Ichthyology},
	volume = {16},
	year = {2018},
	pages = {e170130, 2018},
	abstract = {<p class="rtejustify">The goliath catfish <em>Brachyplatystoma rousseauxii</em> has crucial economical and ecological functions in the Amazon basin. Although its life history characteristics have been studied in the Amazon, there is little information in the Madeira River basin, which holds genetically distinct populations and where dams were recently built. Using fish collected in Bolivia, Brazil and Peru, this study provides a validation of growth rings deposition and details the growth patterns of <em>B. rousseauxii</em> in the Madeira before the dams{\textquoteright} construction. Age structure and growth parameters were determined from 497 otolith readings. The species exhibits two growth rings per year and sampled fish were between 0 and 16 years old. In the Brazilian portion of the basin, mainly young individuals below 5 years old were found, whereas older fish (\&gt; 5 years) were caught only in the Bolivian and Peruvian stretches, indicating that after migrating upstream to reproduce, adults remain in the headwaters of the Madeira River. Comparing with previous publications, <em>B. rousseauxii</em> had a slower growth and 20 cm lower maximum standard length in the Madeira River than in the Amazon River. This study provides a baseline for future evaluation of changes in population dynamics of the species following dams closure.</p>

<p class="rtejustify">Palabras clave:\&nbsp;Amazon; Biannual rings; Goliath catfish; Life cycle; Otolith</p>
},
	doi = {10.1590/1982-0224-20170130},
	author = {Hauser, Marilia and Doria, C R C and Melo, L and Santos, A and Ayala, D and Nogueira, L and Amadio, S. A. and Fabr{\'e}, N and Torrente-Vilara, Gislene and Garc{\'\i}a V{\'a}squez, A and Renno, Jean-Francois and Carvajal-Vallejos, F M and Alonso, J-C and N{\'u}{\~n}ez-Rodr{\'\i}guez, Jes{\'u}s and Fabrice Duponchelle}
}
@article {5428,
	title = {Annual Phytoplankton Primary Production Estimation in a Temperate Estuary by Coupling PAM and Carbon Incorporation Methods},
	journal = {Estuaries and Coasts},
	year = {2018},
	month = {02/2018},
	abstract = {<p class="rtejustify">Phytoplankton primary production varies considerably with environmental parameters especially in dynamic ecosystems like estuaries. The aimof this study was to investigate short-term primary production along the salinity gradient of a temperate estuary over the course of 1 year. The combination of carbon incorporation and fluorescence methods enabled primary production estimation at short spatial and temporal scales. The electron requirement for carbon fixation was investigated in relation with physical-chemical parameters to accurately estimate primary production at high frequency. These results combined with the variability of the photic layer allowed the annual estimation of primary production along the estuary. Phytoplankton dynamics was closely related to salinity and turbidity gradients, which strongly influenced cells physiology and photoacclimatation. The number of electrons required to fix 1 mol of carbon (C) was ranged between 1.6 and 25 mol electron mol C-1 with a mean annual value of 8 {\textpm} 5 mol electron mol C-1. This optimum value suggests that in nutrient replete conditions like estuaries, alternative electron flows are low, while electrons transfer from photosystem II to carbon fixation is highly efficient. A statistical model was used to improve the estimation of primary production from electron transport rate as a function of significant environmental parameters. Based on this model, daily carbon production in the Seine estuary (France) was estimated by considering light and photic zone variability. A mean annual daily primary production of 0.12 {\textpm} 0.18 g C m-2 day-1 with a maximum of 1.18 g C m-2 day-1 in summer was estimated which lead to an annual mean of 64.75 g C m-2 year-1. This approach should be applied more frequently in dynamic ecosystems such as estuaries or coastal waters to accurately estimate primary production in those valuable ecosystems.</p>
},
	keywords = {High frequency . Electron requirement for carbon fixation . Electron transport rate (ETR) . Seine estuary},
	author = {Morelle, J{\'e}r{\^o}me and Mathilde Schapira and Francis Orvain and Riou, Philippe and Pascal Jean Lopez and Duplessix, Olivier and Rabiller, Emilie and Maheux, Franc and Simon, Benjamin and Pascal Claquin}
}
@article {Raoux201811,
	title = {Assessing cumulative socio-ecological impacts of offshore wind farm development in the Bay of Seine (English Channel)},
	journal = {Marine Policy},
	volume = {89},
	year = {2018},
	note = {cited By 2},
	pages = {11-20},
	publisher = {Elsevier Ltd},
	abstract = {As part of the energy transition, the French government is planning the construction of Offshore Wind Farms (OWFs) in Normandy. These OWFs will be integrated into an ecosystem already facing multiple anthropogenic disturbances. A holistic view of cumulated impacts (OWF construction, global warming and fisheries) were developed on the Courseulles-sur-Mer{\textquoteright} ecosystem through the use of a qualitative mathematical modelling approach. This modelling approach provides the mean to consider alternative hypotheses about how the ecosystem structure and function affects its dynamics. Alternative models were constructed to address the different hypotheses regarding the behaviour of top predator (whether the top predators will be scared away by the OWF or attracted by the reef effect), impacts of global warming and changes in fisheries activities. Key findings from these analyses are that the OWF construction could lead to an increase in benthos species and fish benthos feeders whatever the perturbation scenario, while the predicted response of top predators was ambiguous across all perturbation scenario. Qualitative modelling results can play a vital role in decision making by improving long term planning for the marine environment but also as a tool for communication with the public and so contribute to a better acceptability of the Marine Renewable Energy (MRE) project. {\textcopyright} 2017 Elsevier Ltd},
	keywords = {alternative energy, Bay of Seine, development project, ecological impact, ecosystem management, English Channel, environmental impact assessment, environmental planning, France, Marine environment, offshore structure, qualitative analysis, social impact, wind farm},
	issn = {0308597X},
	doi = {10.1016/j.marpol.2017.12.007},
	url = {https://www.sciencedirect.com/science/article/pii/S0308597X1730444X},
	author = {Raoux, Aurore and Dambacher, J.M. and Pezy, Jean-Philippe and Maz{\'e}, C. and Jean-Claude Dauvin and Nathalie Niquil}
}
@article {7175,
	title = {Benthic species of the Kerguelen Plateau show contrasting distribution shifts in response to environmental changes},
	journal = {Ecology and Evolution},
	volume = {8},
	year = {2018},
	month = {Jan-06-2018},
	pages = {6210 - 6225},
	doi = {10.1002/ece3.2018.8.issue-1210.1002/ece3.4091},
	url = {http://doi.wiley.com/10.1002/ece3.2018.8.issue-12},
	author = {Guillaumot, Charl{\`e}ne and Fabri-Ruiz, Salom{\'e} and Martin, Alexis and Eleaume, Marc and Danis, Bruno and Feral, Jean-Pierre and Sauc{\`e}de, Thomas}
}
@article {5477,
	title = {Biomineralization in modern avian calcified eggshells: similarity versus diversity},
	journal = {Connective Tissue Research},
	volume = {59},
	year = {2018},
	month = {01/2018},
	pages = {67-73},
	type = {Journal article},
	abstract = {Avian eggshells are composed of several layers made of organic compounds and a mineral phase (calcite), and the general structure is basically the same in all species. A comparison of the structure, crystallography, and chemical composition shows that despite an overall similarity, each species has its own structure, crystallinity, and composition. Eggshells are a perfect example of the crystallographic versus biological concept of the formation and growth mechanisms of calcareous biominerals: the spherulitic-columnar structure is described as "a typical case of competitive crystal growth", but it is also said that the eggshell matrix components regulate eggshell mineralization. Electron back scattered diffraction (EBSD) analyses show that the crystallinity differs between different species. Nevertheless, the three layers are composed of rounded granules, and neither facets nor angles are visible. In-situ analyses show the heterogeneous distribution of chemical elements throughout the thickness of single eggshell. The presence of organic matrices other than the outer and inner membranes in eggshells is confirmed by thermograms and infrared spectrometry, and the differences in quality and quantity depend on the species. Thus, as in other biocrystals, crystal growth competition is not enough to explain these differences, and there is a strong biological control of the eggshell secretion.},
	author = {Dauphin, Y and Luquet, G and Perez-Huerta, A and Salom{\'e}, M}
}
@article {6818,
	title = {Blow Your Nose, Shrimp! Unexpectedly Dense Bacterial Communities Occur on the Antennae and Antennules of Hydrothermal Vent Shrimp},
	journal = {Frontiers in Marine Science},
	volume = {5},
	year = {2018},
	month = {Aug-10-2018},
	abstract = {In crustaceans, as in other animals, perception of environmental cues is of key importance for a wide range of interactions with the environment and congeners. Chemoreception involves mainly the antennae and antennules, which carry sensilla that detect water-borne chemicals. The functional importance of these as exchange surfaces in the shrimp{\textquoteright}s sensory perception requires them to remain free of any microorganism and deposit that could impair the fixation of odorant molecules on sensory neurons. We report here the occurrence of an unexpected dense bacterial colonization on surface of the antennae and antennules of four hydrothermal vent shrimp species. Microscopic observation, qPCR and 16S rRNA barcoding reveal the abundance, diversity and taxonomic composition of these bacterial communities, that are compared with those found on a related coastal shrimp. Bacterial abundances vary among species. Bacteria are almost absent in coastal shrimp, meanwhile they fully cover the antennal flagella in some hydrothermal vent species. Epsilon- and Gammaproteobacteria dominate the hydrothermal shrimp-associated communities, whereas Alphaproteobacteria and Bacteroidetes are dominant in the coastal ones. Bacteria associated with vent shrimp species are most similar to known chemoautotrophic sulfur-oxidizers. Potential roles of these bacteria on the hydrothermal shrimp antennae and antennules and on sensory functions are discussed.},
	doi = {10.3389/fmars.2018.00357},
	url = {https://www.frontiersin.org/article/10.3389/fmars.2018.00357/full},
	author = {Magali Zbinden and Gallet, Alison and Szafranski, Kamil M. and Machon, Julia and Juliette Ravaux and L{\'e}ger, Nelly and Duperron, S{\'e}bastien}
}
@article {5465,
	title = {Carbon biogeochemistry and CO2 emissions in a human impacted and mangrove dominated tropical estuary (Can Gio, Vietnam)},
	journal = {Biogeochemistry},
	year = {2018},
	month = {27/04/2018},
	pages = {1-15},
	abstract = {<p class="rtejustify">The quantitative contribution of tropical estuaries to the atmospheric CO2\&nbsp;budget has large uncertainties, both spatially and seasonally. We investigated the seasonal and spatial variations of carbon biogeochemistry downstream of Ho Chi Minh City (Southern Vietnam). We sampled four sites distributed from downstream of a highly urbanised watershed through mangroves to the South China Sea coast during the dry and wet seasons. Measured partial pressure of CO2(pCO2) ranged from 660 to 3000\&nbsp;μatm during the dry season, and from 740 to 5000\&nbsp;μatm during the wet season. High organic load, dissolved oxygen saturation down to 17\%, and pCO2up to 5000\&nbsp;μatm at the freshwater endmember of the estuary reflected the intense human pressure on this ecosystem. We show that releases from mangrove soils affect the water column pCO2\&nbsp;in this large tropical estuary (~600\&nbsp;m wide and 10{\textendash}20\&nbsp;m deep). This study is among the few to report direct measurements of both water pCO2\&nbsp;and CO2\&nbsp;emissions in a Southeast Asian tropical estuary located in a highly urbanised watershed. It shows that the contribution of such estuaries may have been previously underestimated, with CO2\&nbsp;emissions ranging from 74 to 876\&nbsp;mmol\&nbsp;m-2\&nbsp;day-1\&nbsp;at low current velocity (\&lt;\&nbsp;0.2\&nbsp;m\&nbsp;s-1). Corresponding gas transfer velocities k600,\&nbsp;ranging from 1.7 to 11.0\&nbsp;m\&nbsp;day-1,\&nbsp;were about 2 to 4 times of k600\&nbsp;estimated using published literature equations.</p>
},
	doi = {https://doi.org/10.1007/s10533-018-0444-z},
	author = {Frank David and Tarik Meziane and Tran-thi, N and Truong Van, V and Th{\`a}nh-Nho, N and Pierre Taillardat and Cyril Marchand}
}
@article {5920,
	title = {Carbon dioxide degassing at the groundwater-stream-atmosphere interface: isotopic equilibration and hydrological mass balance in a sandy watershed},
	journal = {Journal of Hydrology},
	volume = {558},
	year = {2018},
	pages = {129{\textendash}143},
	doi = {10.1016/j.jhydrol.2018.01.003},
	url = {https://doi.org/10.1016/j.jhydrol.2018.01.003},
	author = {Loris Deirmendjian and Gwena{\"e}l Abril}
}
@article {5920,
	title = {Carbon dioxide degassing at the groundwater-stream-atmosphere interface: isotopic equilibration and hydrological mass balance in a sandy watershed},
	journal = {Journal of Hydrology},
	volume = {558},
	year = {2018},
	pages = {129{\textendash}143},
	doi = {10.1016/j.jhydrol.2018.01.003},
	url = {https://doi.org/10.1016/j.jhydrol.2018.01.003},
	author = {Loris Deirmendjian and Gwena{\"e}l Abril}
}
@article {9382,
	title = {Carbon dynamics and inconstant porewater input in a mangrove tidal creek over contrasting seasons and tidal amplitudes},
	journal = {Geochimica et Cosmochimica Acta},
	volume = {237},
	year = {2018},
	pages = {32{\textendash}48},
	abstract = {Constraining the contribution of mangrove-derived carbon in tidal creeks is fundamental to understanding the fate of mangrove primary production and the role of mangroves as coastal carbon sinks. Porewater measurements and 24-h time series in a mangrove tidal creek were conducted during the dry and wet season, and over contrasting tidal ranges at the Can Gio Biosphere Reserve, Vietnam. Surface water carbon concentrations (dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), partial pressure of carbon dioxide (pCO2)) and their respective d13C values were correlated with radon, suggesting that porewater input drives mangrove-derived carbon in the tidal creek. Based on three complementary mixing models, porewater input contributed to about 30\% of the water volume and 46\% to 100\% of DOC and DIC pools in the tidal creek at low tide, with variabilities between seasons and tidal amplitudes. The creek carbon pool was 88\% DIC, 6\% DOC, and 6\% particulate organic carbon (POC). The pCO2 values during the wet season (2973{\textendash}16,495 latm) were on average 5-fold higher than during the dry season (584{\textendash}2946 latm). This was explained by a potential greater mineralization attributed to higher organic matter availability and residual humidity that stimulate bacterial activity, and by a potential tidal dilution changing the pCO2/DIC ratio as suggested by the Revelle factor. Consequently, average CO2 evasion from the creek was estimated at 327{\textendash}427 mmolC m{\`A}2 d{\`A}1 during the wet season and 92{\textendash}213 mmolC m{\`A}2 d{\`A}1 during the dry season, using two independent approaches. Tidal amplitude seemed to influence porewater input and its carbon loads, with a higher contribution during frequent and high tidal amplitudes (symmetric). However, the highest input occurred in a tidal cycle which was preceded by tidal cycle of low amplitude (asymmetric). We explain this ambiguity by the influence of both, rapid water turnover intensifying porewater exchange, and long water residence time enhancing carbon load in porewater.},
	issn = {00167037},
	doi = {10.1016/j.gca.2018.06.012},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016703718303272},
	author = {Taillardat, Pierre and Ziegler, Alan D. and Friess, Daniel A. and Widory, David and Truong Van, Vinh and Frank David and Thanh-Nho, Nguyen and Marchand, Cyril}
}
@article {5926,
	title = {Caridina variabilirostris (Crustacea: Decapoda: Atyidae), a new species of freshwater shrimp from Pohnpei (Micronesia)},
	journal = {European Journal of Taxonomy},
	volume = {453},
	year = {2018},
	pages = {1-16},
	abstract = {<p>Recently de Mazancourt\&nbsp;et al.(2017) highligted the {\textquotedblleft}Pinocchio-shrimp effect{\textquotedblright} on a new species of Atyid shrimp from Pohnpei (Micronesia). In combinating morphological data with a genetical analysis, this species is described here with its ecological distribution.\&nbsp;The status of this new species is clarified and finally, neither\&nbsp;C. brachydactyla\&nbsp;De Man 1908nor\&nbsp;C. mertoniJ. Roux, 1911 occur in Pohnpei.</p>
},
	author = {de Mazancourt, Valentin and Marquet, G{\'e}rard and Philippe Keith}
}
@article {5564,
	title = {Characterization of a tachykinin signalling system in the bivalve mollusc Crassostrea gigas},
	journal = {General and Comparative Endocrinology},
	volume = {266},
	year = {2018},
	pages = {110-118},
	type = {regular},
	abstract = {<p class="rtejustify">Although tachykinin-like neuropeptides have been identified in molluscs more than two decades ago, knowledge on their function and signalling has so far remained largely elusive. We developed a cell-based assay to address the functionality of the tachykinin G-protein coupled receptor (Cragi-TKR) in the oyster Crassostrea gigas. The oyster tachykinin neuropeptides that are derived from the tachykinin precursor gene Cragi-TK activate the Cragi-TKR in nanomolar concentrations. Receptor activation is sensitive to Ala-substitution of critical Cragi-TK amino acid residues. The Cragi-TKR gene is expressed in a variety of tissues, albeit at higher levels in the visceral ganglia (VG) of the nervous system. Fluctuations of Cragi-TKR expression is in line with a role for TK signalling in C. gigas reproduction. The expression level of the Cragi-TK gene in the VG depends on the nutritional status of the oyster, suggesting a role for TK signalling in the complex regulation of feeding in C. gigas.</p>
},
	doi = {https://doi.org/10.1016/j.ygcen.2018.05.003},
	author = {Marie-Pierre Dubos and Sven Zels and Julie Schwartz and Jeremy Pasquier and Liliane Schoofs and Pascal Favrel}
}
@article {5662,
	title = {Characterization of gonadotropin-releasing hormone (GnRH) genes from cartilaginous fish: evolutionary perspectives.},
	journal = {Frontiers in Neuroscience},
	volume = {12},
	year = {2018},
	pages = {607},
	author = {Gaillard, A-L and Tay, Boon-Hui and Perez-Sirkin, Daniela and Anne-Gaelle Lafont and De Flori, C{\'e}line and Vissio, Paula G. and Mazan, Sylvie and Sylvie Dufour and Venkatesh, Byrappa and Tostivint, Herv{\'e}}
}
@article {6078,
	title = {Chemically-Mediated Interactions Between Macroalgae, Their Fungal Endophytes, and Protistan Pathogens},
	journal = {Frontiers in Microbiology},
	volume = {9},
	year = {2018},
	pages = {3161},
	abstract = {<p>Filamentous fungi asymptomatically colonise the inner tissues of macroalgae, yet their ecological roles remain largely underexplored. Here, we tested if metabolites produced by fungal endophytes might protect their host against a phylogenetically broad spectrum of protistan pathogens. Accordingly, the cultivable fungal endophytes of four brown algal species were isolated and identified based on LSU and SSU sequencing. The fungal metabolomes were tested for their ability to reduce the infection by protistan pathogens in the algal model Ectocarpus siliculosus. The most active metabolomes effective against the oomycetes Eurychasma dicksonii and Anisolpidium ectocarpii, and the phytomixid Maullinia ectocarpii were further characterized chemically. Several pyrenocines isolated from Phaeosphaeria sp. AN596H efficiently inhibited the infection by all abovementioned pathogens. Strikingly, these compounds also inhibited the infection of nori (Pyropia yezoensis) against its two most devastating oomycete pathogens, Olpidiopsis pyropiae and Pythium porphyrae. We thus demonstrate that fungal endophytes associated with brown algae produce bioactive metabolites which might confer protection against pathogen infection. These results highlight the potential of metabolites to finely-tune the outcome of molecular interactions between algae, their endophytes and protistan pathogens. This also provide proof-of-concept towards the applicability of such metabolites in marine aquaculture to control otherwise untreatable diseases.</p>
},
	issn = {1664-302X},
	doi = {10.3389/fmicb.2018.03161},
	url = {https://www.frontiersin.org/article/10.3389/fmicb.2018.03161},
	author = {Vallet, Marine and Strittmatter, Martina and Mur{\'u}a, Pedro and Lacoste, Sandrine and Dupont, Jo{\"e}lle and C{\'e}dric Hubas and Genta-Jouve, Gregory and Claire M. M. Gachon and Kim, Gwang Hoon and Prado, Soizic}
}
@article {8568,
	title = {Combined use of two supervised learning algorithms to model sea turtle behaviours from tri-axial acceleration data},
	journal = {Journal of Experimental Biology},
	year = {2018},
	month = {Jan-01-2018},
	issn = {0022-0949},
	doi = {10.1242/jeb.177378},
	url = {https://journals.biologists.com/jeb/article/doi/10.1242/jeb.177378/262989/Combined-use-of-two-supervised-learning-algorithms},
	author = {Jeantet, L. and Dell{\textquoteright}Amico, F. and Forin-Wiart, M. A. and Coutant, M. and Bonola, M. and Etienne, D. and Gresser, J. and Regis, S. and Lecerf, N. and Lefebvre, F. and de Thoisy, B. and Le Maho, Y. and Brucker, M. and Ch{\^a}telain, N. and Laesser, R. and Crenner, F. and Handrich, Y. and Wilson, R. and Chevallier, D.}
}
@article {8557,
	title = {Connecting paths between juvenile and adult habitats in the Atlantic green turtle using genetics and satellite tracking},
	journal = {Ecology and Evolution},
	volume = {8},
	year = {2018},
	month = {Jan-12-2018},
	pages = {12790 - 12802},
	issn = {2045-7758},
	doi = {10.1002/ece3.2018.8.issue-2410.1002/ece3.4708},
	url = {https://onlinelibrary.wiley.com/toc/20457758/8/24},
	author = {Chambault, Philippine and de Thoisy, Beno{\^\i}t and Huguin, Ma{\"\i}lis and Martin, Jordan and Bonola, Marc and Etienne, Denis and Gresser, Julie and Hielard, Ga{\"e}lle and Mailles, Julien and Vedie, Fabien and Barnerias, Cyrille and Sutter, Emmanuel and Guillemot, Blandine and Dumont-Dayot, {\'E}milie and R{\'e}gis, Sidney and Lecerf, Nicolas and Lefebvre, Fabien and Frouin, C{\'e}dric and Aubert, Nathalie and Guimera, Christelle and Bordes, Robinson and Thieulle, Laurent and Duru, Matthieu and Bouaziz, Myriam and Pinson, Adrien and Flora, Fr{\'e}d{\'e}ric and Queneherve, Patrick and Woignier, Thierry and Allenou, Jean-Pierre and Cimiterra, Nicolas and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Maillet, Thomas and Rangon, Luc and Chanteux, No{\'e}mie and Chanteur, B{\'e}n{\'e}dicte and B{\'e}ranger, Christelle and Le Maho, Yvon and Petit, Odile and Chevallier, Damien}
}
@article {6929,
	title = {Contamination of marine fauna by chlordecone in Guadeloupe: evidence of a seaward decreasing gradient},
	journal = {Environmental Science and Pollution Research},
	volume = {25},
	year = {2018},
	month = {Jan-05-2018},
	pages = {14294 - 14301},
	issn = {0944-1344},
	doi = {10.1007/s11356-017-8924-6},
	url = {http://link.springer.com/10.1007/s11356-017-8924-6},
	author = {Charlotte R. Dromard and Gu{\'e}n{\'e}, Mathilde and Bouchon-Navaro, Yolande and Lemoine, Soazig and Cordonnier, S{\'e}bastien and Bouchon, Claude}
}
@article {8113,
	title = {Cryptic frenulates are the dominant chemosymbiotrophic fauna at Arctic and high latitude Atlantic cold seeps},
	journal = {PLOS ONE},
	volume = {13},
	year = {2018},
	month = {Apr-12-2020},
	pages = {e0209273},
	doi = {10.1371/journal.pone.0209273},
	url = {https://dx.plos.org/10.1371/journal.pone.0209273},
	author = {Sen, Arunima and Duperron, S{\'e}bastien and Hourdez, St{\'e}phane and Piquet, B{\'e}r{\'e}nice and L{\'e}ger, Nelly and Gebruk, Andrey and Le Port, Anne-Sophie and Svenning, Mette Marianne and Andersen, Ann C.},
	editor = {Kiel, Steffen}
}
@inbook {5497,
	title = {De la nuisibilit{\'e} {\`a} la patrimonialit{\'e} en milieu marin. L{\textquoteright}histoire d{\textquoteright}une ambigu{\"\i}t{\'e} entretenue},
	booktitle = {Sales b{\^e}tes, mauvaises herbes},
	volume = {1},
	year = {2018},
	publisher = {Presses Universitaires de Rennes},
	organization = {Presses Universitaires de Rennes},
	address = {Rennes},
	author = {Patrick, Le Mao and Nicolas Desroy and J{\'e}r{\^o}me Fournier and Laurent Godet and Eric Thi{\'e}baut}
}
@article {5344,
	title = {Description of a new species of Caridina (Crustacea: Decapoda: Atyidae) from two Micronesian islands (Guam and Babeldaob)},
	journal = {Zootaxa},
	volume = {4377},
	year = {2018},
	pages = {039{\textendash}050},
	abstract = {<p class="rtejustify">During field trips to Guam and Babeldaob Islands in Micronesia, freshwater shrimps were sampled and assigned either to <em>Caridina brachydactyla</em> De Man, 1908 or <em>C. mertoni</em> J. Roux, 1911 (Decapoda: Atyidae), following previous inventories. In combining morphological data with a genetical analysis, it appeared that all the specimens belonged to a new species, <em>Caridina variabilis sp</em>. <em>nov.</em>, here described with its distribution. The status of this new species is clarified and finally, neither <em>C. brachydactyla</em>, nor <em>C. mertoni</em> occur in these two islands. DNA sequences of 16S were obtained from the syntypes of <em>C. mertoni</em>.</p>
},
	author = {de Mazancourt, Valentin and Marquet, G{\'e}rard and Rogers, D Christopher and Philippe Keith}
}
@article {5025,
	title = {Diel Rhythm Does Not Shape the Vertical Distribution of Bacterial and Archaeal 16S rRNA Transcript Diversity in Intertidal Sediments: a Mesocosm Study},
	journal = {Microbial Ecology},
	volume = {75},
	year = {2018},
	month = {Aug},
	pages = {364-374.},
	abstract = {<p class="rtejustify">In intertidal sediments, circadian oscillations (i.e., tidal and diel rhythms) and/or depth may affect prokaryotic activity. However, it is difficult to distinguish the effect of each single force on active community changes in these natural and complex intertidal ecosystems. Therefore, we developed a tidal mesocosm to control the tidal rhythm and test whether diel fluctuation or sediment depth influence active prokaryotes in the top 10\&nbsp;cm of sediment. Day- and nighttime emersions were compared as they are expected to display contrasting conditions through microphytobenthic activity in five different sediment layers. A multiple factor analysis revealed that bacterial and archaeal 16S ribosomal RNA (rRNA) transcript diversity assessed by pyrosequencing was similar between day and night emersions. Potentially active benthic Bacteria were highly diverse and influenced by chlorophyll a and phosphate concentrations. While in oxic and suboxic sediments, Thaumarchaeota Marine Group I (MGI) was the most active archaeal phylum, suggesting the importance of the nitrogen cycle in muddy sediments, in anoxic sediments, the mysterious archaeal C3 group dominated the community. This work highlighted that active prokaryotes organize themselves vertically within sediments independently of diel fluctuations suggesting adaptation to physicochemical-specific conditions associated with sediment depth.</p>
},
	issn = {1432-184X},
	doi = {10.1007/s00248-017-1048-1},
	url = {https://doi.org/10.1007/s00248-017-1048-1},
	author = {Lavergne, C. and Hugoni, M. and C{\'e}dric Hubas and Debroas, D. and Christine Dupuy and Agogu{\'e}, H.}
}
@article {6930,
	title = {Different transfer pathways of an organochlorine pesticide across marine tropical food webs assessed with stable isotope analysis},
	journal = {PLOS ONE},
	volume = {13},
	year = {2018},
	month = {Jan-02-2018},
	pages = {e0191335},
	doi = {10.1371/journal.pone.019133510.1371/journal.pone.0191335.g00110.1371/journal.pone.0191335.t00110.1371/journal.pone.0191335.t00210.1371/journal.pone.0191335.s001},
	url = {https://dx.plos.org/10.1371/journal.pone.0191335},
	author = {Charlotte R. Dromard and Bouchon-Navaro, Yolande and Cordonnier, S{\'e}bastien and Gu{\'e}n{\'e}, Mathilde and Harmelin-Vivien, Mireille and Bouchon, Claude}
}
@article {5422,
	title = {Differential expression of gonadotropin and estrogen receptors and oocyte cytology during follicular maturation associated with egg viability in European eel (Anguilla anguilla)},
	journal = {Comparative Biochemistry and Physiology, Part A},
	volume = {221},
	year = {2018},
	pages = {44-54},
	url = {https://doi.org/10.1016/j.cbpa.2018.03.010},
	author = {da Silva, F F G and Tveiten, H and Gersende Maugars and Anne-Gaelle Lafont and Sylvie Dufour and St{\o}ttrupa, J G and Kj{\o}rsvikd, E and Tomkiewicz, J}
}
@article {5551,
	title = {Distribution, associated species and extent of biofouling {\textquotedblleft}reefs{\textquotedblright} formed by the alien species Ficopomatus enigmaticus (Annelida, Polychaeta) in marinas},
	journal = {Estuarine, Coastal and Shelf Science},
	year = {2018},
	abstract = {<p class="rtejustify">Artificial structures in ports are commonly colonized by non-indigenous epifauna that tolerate high pollution levels. Bioconstructions built by alien species may offer sheltered microhabitats for motile (vagile) animals but biofouling often becomes detrimental to human activities. In this context, the present study provides an inventory of 1) the extent of biofouling related to the alien Polychaeta Ficopomatus enigmaticus on hard structures of marinas in Normandy, France, and 2) the biodiversity of sessile (attached) or vagile (motile) fauna associated with these {\textquotedblleft}reefs{\textquotedblright}, including both native and alien species. Reefs built by F. enigmaticus were found in 6 out of 12 marinas with oligohaline-mesohaline waters. Significant differences in the total volume of biofouling were found among sites, with maximum values observed in Honfleur{\textquoteright}s old basin (459.52 mL per 0.04 m2). Ficopomatus enigmaticus greatly dominated the sessile invertebrate community both in volume (74{\textendash}100\%) and weight (70{\textendash}100\%) in 5 out of 6 marinas. The fouling formed by 5 alien species was colonized by 15 motile invertebrate taxa, including 3 cryptogenic or alien species. The alien crab Rhithropanopeus harrisi displayed the highest frequency of occurrence (\&gt;80\%) and mean density (\&gt;300 ind m-2), and the global densities of sessile (except F. enigmaticus) and motile fauna were significantly correlated (r = 0.824; p \&lt; 0.05). While motile fauna density was also significantly correlated with the biovolume of B. improvisus and M. leucophaeata, it was not with F. enigmaticus (r = 0.421; p \&gt; 0.05). In line with previous studies, these results suggest that F. enigmaticus acts as an engineer offering shelter for reef-associated organisms. In addition, results suggest that at the regional scale, inter-site differences in motile fauna may reflect differences in environmental parameters such as salinity. The presence of F. enigmaticus at low salinity levels led to assess its potential distribution at the scale of the European coasts, suggesting that in the context of climate change, favorable conditions for spawning (\&gt;18 {\textdegree}C) will likely expand towards the North, and particularly in the eastern and northern Baltic Sea.</p>
},
	keywords = {Alien species, Benthic communities, Biofouling, Ficopomatus enigmaticus, Marinas, Normandy},
	doi = {https://doi.org/10.1016/j.ecss.2018.07.007},
	author = {Maud Charles and Robin Faillettaz and Nicolas Desroy and J{\'e}r{\^o}me Fournier and Katherine Costil}
}
@article {6744,
	title = {Dynamics of particulate organic matter composition in coastal systems: Forcing of spatio-temporal variability at multi-systems scale},
	journal = {Progress in Oceanography},
	volume = {162},
	year = {2018},
	month = {Jan-03-2018},
	pages = {271 - 289},
	issn = {00796611},
	doi = {10.1016/j.pocean.2018.02.026},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0079661117302100},
	author = {Li{\'e}nart, Camilla and Savoye, Nicolas and David, Val{\'e}rie and Ramond, Pierre and Rodriguez Tress, Paco and Hanquiez, Vincent and Marieu, Vincent and Aubert, Fabien and Aubin, S{\'e}bastien and Bichon, Sabrina and Boinet, Christophe and Bourasseau, Line and Bozec, Yann and Br{\'e}ret, Martine and Elsa Breton and Caparros, Jocelyne and Cariou, Thierry and Claquin, Pascal and Conan, Pascal and Corre, Anne-Marie and Costes, Laurence and Muriel Crouvoisier and Del Amo, Yolanda and Derriennic, Herv{\'e} and Dindinaud, Fran{\c c}ois and Duran, Robert and Durozier, Ma{\"\i}a and Devesa, J{\'e}r{\'e}my and Ferreira, Sophie and Eric Feunteun and Garcia, Nicole and Geslin, Sandrine and Emilie Grossteffan and Gueux, Aurore and Guillaudeau, Julien and Guillou, Ga{\"e}l and Jolly, Orianne and Lachauss{\'e}e, Nicolas and Lafont, Michel and Lagadec, V{\'e}ronique and Lamoureux, J{\'e}zabel and Lauga, B{\'e}atrice and Lebreton, Beno{\^\i}t and Lecuyer, Eric and Lehodey, Jean-Paul and Leroux, C{\'e}dric and St{\'e}phane L{\textquoteright}Helguen and Mac{\'e}, Eric and Maria, Eric and Mousseau, Laure and Antoine Nowaczyk and Pineau, Philippe and Petit, Franck and Pujo-Pay, Mireille and Raimbault, Patrick and Rimmelin-Maury, Peggy and Rouaud, Vanessa and Sauriau, Pierre-Guy and Sultan, Emmanuelle and Susperregui, Nicolas}
}
@article {5421,
	title = {Eel Kisspeptins: identification, functional activity, and inhibition on both pituitary LH and GnRH receptor expression},
	journal = {Frontiers in Endocrinology},
	volume = {8},
	year = {2018},
	pages = {353},
	abstract = {<p class="rtejustify">The European eel (<em>Anguilla anguilla</em>) presents a blockade of sexual maturation at a prepubertal stage due to a deficient production of gonadotropins. We previously initiated, in the eel, the investigation of the kisspeptin system, one of the major gatekeepers of puberty in mammals, and we predicted the sequence of two Kiss genes. In the present study, we cloned and sequenced Kiss1 and Kiss2 cDNAs from the eel brain. The tissue distributions of Kiss1 and Kiss2 transcripts, as investigated by quantitative real-time PCR, showed that both genes are primarily expressed in the eel brain and pituitary. The two 10-residue long sequences characteristic of kisspeptin, eel Kp1(10) and Kp2(10), as well as two longer sequences, predicted as mature peptides, eel Kp1(15) and Kp2(12), were synthesized and functionally analyzed. Using rat Kiss1 receptor-transfected Chinese hamster ovary cells, we found that the four synthesized eel peptides were able to induce [Ca2+]i responses, indicating their ability to bind mammalian KissR-1 and to activate second messenger pathways. In primary culture of eel pituitary cells, all four peptides were able to specifically and dose-dependently inhibit lhβ expression, without any effect on fshβ, confirming our previous data with heterologous kisspeptins. Furthermore, in this eel in vitro system, all four peptides inhibited the expression of the type 2 GnRH receptor (gnrh-r2). Our data revealed a dual inhibitory effect of homologous kisspeptins on both pituitary lhβ and gnrh-r2 expression in the European eel.</p>
},
	doi = {10.3389/fendo.2017.00353},
	author = {Pasquier, J and Anne-Gaelle Lafont and Florian, D and Lefranc, B and Dubessy, C and Moreno-Herrera, A and Vaudry, H and Leprince, J and Sylvie Dufour and Karine Rousseau}
}
@article {5619,
	title = {Effect of CO2{\textendash}induced ocean acidification on the early development and shell mineralization of the European abalone (Haliotis tuberculata)},
	journal = {Journal of Experimental Marine Biology and Ecology},
	volume = {508},
	year = {2018},
	pages = {52 - 63},
	abstract = {<p>Ocean acidification is a major global stressor that leads to substantial changes in seawater carbonate chemistry, with potentially significant consequences for calcifying organisms. Marine shelled mollusks are ecologically and economically important species providing essential ecosystem services and food sources for other species. Because they use calcium carbonate (CaCO3) to produce their shells, mollusks are among the most vulnerable invertebrates to ocean acidification, with early developmental stages being particularly sensitive to pH changes. This study investigated the effects of CO2-induced ocean acidification on larval development of the European abalone Haliotis tuberculata, a commercially important gastropod species. Abalone larvae were exposed to a range of reduced pHs (8.0, 7.7 and 7.6) over the course of their development cycle, from early-hatched trochophore to pre-metamorphic veliger. Biological responses were evaluated by measuring the survival rate, morphology and development, growth rate and shell calcification. Larval survival was significantly lower in acidified conditions than in control conditions. Similarly, larval size was consistently smaller under low pH conditions. Larval development was also affected, with evidence of a developmental delay and an increase in the proportion of malformed or unshelled larvae. In shelled larvae, the intensity of birefringence decreased under low pH conditions, suggesting a reduction in shell mineralization. Since these biological effects were observed for pH values expected by 2100, ocean acidification may have potentially negative consequences for larval recruitment and persistence of abalone populations in the near future.</p>
},
	keywords = {Abalone, larval development, Ocean acidification, Shell mineralization},
	issn = {0022-0981},
	doi = {https://doi.org/10.1016/j.jembe.2018.08.005},
	url = {http://www.sciencedirect.com/science/article/pii/S0022098117304070},
	author = {Nathalie Wessel and Sophie Martin and Badou, Aicha and Philippe Dubois and Sylvain Huchette and Vivien Julia and Flavia Nunes and Ewan Harney and Christine Paillard and St{\'e}phanie Auzoux-Bordenave}
}
@article {5707,
	title = {Emergence of a cholecystokinin/sulfakinin signalling system in Lophotrochozoa},
	journal = {Scientific Reports},
	volume = {8},
	year = {2018},
	month = {11/2018},
	pages = {16424},
	abstract = {Chordate gastrin/cholecystokinin (G/CCK) and ecdysozoan sulfakinin (SK) signalling systems represent divergent evolutionary scenarios of a common ancestral signalling system. The present article investigates for the first time the evolution of the CCK/SK signalling system in a member of the Lophotrochozoa, the second clade of protostome animals. We identified two G protein-coupled receptors (GPCR) in the oyster\&nbsp;Crassostrea gigas\&nbsp;(Mollusca), phylogenetically related to chordate CCK receptors (CCKR) and to ecdysozoan sulfakinin receptors (SKR). These receptors, Cragi-CCKR1 and Cragi-CCKR2, were characterised functionally using a cell-based assay. We identified di- and mono-sulphated forms of oyster Cragi-CCK1 (pEGAWDY(SO3H)DY(SO3H)GLGGGRF-NH2) as the potent endogenous agonists for these receptors. The Cragi-CCK genes were expressed in the visceral ganglia of the nervous system. The Cragi-CCKR1 gene was expressed in a variety of tissues, while Cragi-CCKR2 gene expression was more restricted to nervous tissues. An\&nbsp;in vitro\&nbsp;bioassay revealed that different forms of Cragi-CCK1 decreased the frequency of the spontaneous contractions of oyster hindgut. Expression analyses in oysters with contrasted nutritional statuses or in the course of their reproductive cycle highlighted the plausible role of Cragi-CCK signalling in the regulation of feeding and its possible involvement in the coordination of nutrition and energy storage in the gonad. This study confirms the early origin of the CCK/SK signalling system from the common bilaterian ancestor and delivers new insights into its structural and functional evolution in the lophotrochozoan lineage.},
	doi = {doi.org/10.1038/s41598-018-34700-4},
	url = {https://www.nature.com/articles/s41598-018-34700-4},
	author = {Julie Schwartz and Marie-Pierre Dubos and Jeremy Pasquier and C{\'e}line Zatylny-Gaudin and Pascal Favrel}
}
@article {8709,
	title = {First demographic insights on historically harvested and poorly known male sperm whale populations off the Crozet and Kerguelen Islands (Southern Ocean)},
	journal = {Marine Mammal Science},
	volume = {34},
	year = {2018},
	month = {Jan-07-2018},
	pages = {595 - 615},
	doi = {10.1111/mms.12469},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/mms.12469},
	author = {Labadie, Guillemette and Tixier, Paul and Barbraud, Christophe and Fay, R{\'e}mi and Nicolas Gasco and Guy Duhamel and Guinet, Christophe}
}
@article {8569,
	title = {First evaluation of the cookie-cutter sharks (Isistius sp.) predation pattern on different cetacean species in Martinique},
	journal = {Environmental Biology of Fishes},
	volume = {101},
	year = {2018},
	month = {Jan-05-2018},
	pages = {749 - 759},
	issn = {0378-1909},
	doi = {10.1007/s10641-018-0735-1},
	url = {http://link.springer.com/10.1007/s10641-018-0735-1},
	author = {Feunteun, A. and de Schrevel, C. and Verhaegen, M. and Chevallier, D. and Duchemin, M. and Ziani, N. and de Montgolfier, B.}
}
@article {5343,
	title = {Genetic and morphological discrimination of three species of ninespined stickleback Pungitius spp. (Teleostei, Gasterosteidae) in France with the revalidation of Pungitius vulgaris (Mauduyt, 1848)},
	journal = {J Zool Syst Evol Res },
	volume = {2017},
	year = {2018},
	pages = {1{\textendash}25},
	abstract = {<p class="rtejustify">The taxonomy of French ninespined sticklebacks (<em>Pungitius spp.</em>) has long been controversial. To clarify the taxonomy in this group, we use mitochondrial (COI) and nuclear\&nbsp; (RNF213) sequence markers, as well as morphological data. In France, both genetic markers discriminate three evolutionary lineages. Morphological analysis on fresh and type specimens supports the different lineages and the existence of three species in France. <em>Pungitius pungitius</em>, occurring in the North of France and Rhone basin, is characterized by specimens longer than 35 mm SL, by a flat head with a straight or slightly concave snout, typically 9{\textendash}10 dorsal spines, 10{\textendash}11 dorsal soft rays, 9{\textendash}10 anal soft rays, 0{\textendash}12 scutes on the caudal peduncle with a keel reaching the last anal-fin ray, longer pelvic fin, post-dorsal and caudal peduncle lengths, and a slim caudal peduncle (caudal peduncle depth/ length 11.8\%{\textendash}21.9\%).<em> Pungitius laevis</em>, occurring in France, in the English Channel basins and Loire drainage, differs from the other species by a head rounded with concave snout in specimens longer than 35 mm SL, accentuating the impression of fleshy lips, 0{\textendash}4 scutes on the caudal peduncle and a higher caudal peduncle depth/length ratio (15.7\%{\textendash} 34.5\%). Finally, <em>Pungitius vulgaris</em>, endemic to the Vienne River and rivers of south-western France as far north as the Garonne estuary, is differentiated by a rounded head with a straight or slightly convex snout, the absence of scutes on the caudal peduncle and by having 11 pectoral-fin rays. Our data confirm the existence of a hybridization zone in the North of France between <em>P. pungitius</em> and <em>P. laevis</em>. As a result, <em>Pungitius lotharingus</em> is invalid, as it was described based on hybrid specimens. A lectotype for <em>P. laevis</em> was designated because the syntypes included hybrids. This revision provides new perspectives for evolutionary biology studies and will have consequences for Pungitius conservation in France.</p>
},
	keywords = {France, Integrative taxonomy, mitochondrial DNA COI, Pungitius, RNF213},
	author = {Denys, Ga{\"e}l and Persat, Henri and Dettai, Agn{\`e}s and Geiger Mathias and Freyhof, J and Fesquet,  J and Philippe Keith}
}
@article {5959,
	title = {Histology of the endothermic opah (Lampris sp.) suggests a new structure function relationship in teleost fish bone},
	journal = {Biology Letters},
	volume = {14},
	year = {2018},
	pages = {20180270},
	abstract = {<p>Endothermy, production and retention of heat by the body, appeared convergently in mammals, birds and four spiny-rayed teleost fish lineages. Of these, red-muscle endothermy over most or all of the body has only appeared in two groups: tunas and the opah (Lampris). Hitherto, tunas have been the only spiny-rayed fishes known to have bones containing embedded osteocyte cells; others have acellular bone. We examined bone histology in Lampris for the first time, demonstrating the presence of cellular bone very similar to that of tunas. This contrasts with the acellular condition of its ectothermic close relatives. The distribution of this character suggests that it co-evolved with red-muscle endothermy, hinting at a common physiological mechanism that would link bone histology to endothermy in these distantly related teleost lineages.</p>
},
	doi = {10.1098/rsbl.2018.0270} URL = {https://royalsocietypublishing.org/doi/abs/10.1098/rsbl.2018.0270},
	author = {Davesne, Donald and Meunier, Francois J. and Friedman, Matt and Benson, Roger B. J. and Otero, Olga}
}
@article {8704,
	title = {How do fishing practices influence sperm whale (Physeter macrocephalus) depredation on demersal longline fisheries?},
	journal = {Fisheries Research},
	volume = {206},
	year = {2018},
	month = {Jan-10-2018},
	pages = {14 - 26},
	issn = {01657836},
	doi = {10.1016/j.fishres.2018.04.019},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0165783618301255},
	author = {Janc, Ana{\"\i}s and Richard, Ga{\"e}tan and Guinet, Christophe and Arnould, John P.Y. and Villanueva, Maria Ching and Guy Duhamel and Nicolas Gasco and Tixier, Paul}
}
@article {5921,
	title = {Hydro-ecological controls on dissolved carbon dynamics in groundwater and export to streams in a temperate pine forest},
	journal = {Biogeosciences},
	volume = {15},
	year = {2018},
	pages = {669{\textendash}691},
	doi = {10.5194/bg-15-669-2018},
	url = {https://doi.org/10.5194/bg-15-669-2018},
	author = {Loris Deirmendjian and Denis Loustau and Laurent Augusto and S{\'e}bastien Lafont and Christophe Chipeaux and Dominique Poirier and Gwena{\"e}l Abril}
}
@article {5921,
	title = {Hydro-ecological controls on dissolved carbon dynamics in groundwater and export to streams in a temperate pine forest},
	journal = {Biogeosciences},
	volume = {15},
	year = {2018},
	pages = {669{\textendash}691},
	doi = {10.5194/bg-15-669-2018},
	url = {https://doi.org/10.5194/bg-15-669-2018},
	author = {Loris Deirmendjian and Denis Loustau and Laurent Augusto and S{\'e}bastien Lafont and Christophe Chipeaux and Dominique Poirier and Gwena{\"e}l Abril}
}
@article {8567,
	title = {Identification of marine key areas across the Caribbean to ensure the conservation of the critically endangered hawksbill turtle},
	journal = {Biological Conservation},
	volume = {223},
	year = {2018},
	month = {Jan-07-2018},
	pages = {170 - 180},
	issn = {00063207},
	doi = {10.1016/j.biocon.2018.05.002},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0006320718301423},
	author = {Nivi{\`e}re, Manon and Chambault, Philippine and P{\'e}rez, Thierry and Etienne, Denis and Bonola, Marc and Martin, Jordan and Barnerias, Cyrille and Vedie, Fabien and Mailles, Julien and Dumont-Dayot, {\'E}milie and Gresser, Julie and Hielard, Ga{\"e}lle and R{\'e}gis, Sidney and Lecerf, Nicolas and Thieulle, Laurent and Duru, Matthieu and Lefebvre, Fabien and Milet, Guillaume and Guillemot, Blandine and Bildan, Bernard and de Montgolfier, Benjamin and Benhalilou, Abdelwahab and Murgale, C{\'e}line and Maillet, Thomas and Queneherve, Patrick and Woignier, Thierry and Safi, Morjane and Le Maho, Yvon and Petit, Odile and Chevallier, Damien}
}
@article {5928,
	title = {Integrative taxonomy helps separate four species of freshwater shrimps commonly overlooked as Caridina longirostris (Crustacea: Decapoda: Atyidae) in Indo-West Pacific islands.},
	journal = {Invertebrate systematics},
	volume = {32},
	year = {2018},
	pages = {1422{\textendash}1447},
	abstract = {<p><em>Caridina longirostris </em>H. Milne Edwards, 1837 described from specimens supposedly from La Macta River near Oran, Algeria, is an emblematic species of the {\textquoteleft}<em>C. nilotica </em>complex{\textquoteright}. Until now this species was thought to have a wide distribution in the Indo-Pacific region. Recently, numerous specimens identified as<em> C. longirostris </em>were collected from various Indo-West Pacific localities. In the context of integrative taxonomy, both old and newly collected specimens were morphologically and genetically studied. Four species allied to<em> C. longirostris</em> are here identified: <em>C. appendiculata</em> Jalihal \&amp; Shenoy, 1998, <em>C. brevidactyla</em> Roux, 1920, <em>C. gracilipes </em>De Man, 1892 and <em>C. meridionalis</em> Roux, 1926. Detailed re-descriptions of these four species are given as well as their geographical and ecological distributions. <em>Caridina nilotica var. brevidactyla </em>is revalidated as the species <em>C. brevidactyla</em>, and <em>C. coulaborensis</em> Richard\&amp;Clark, 2014, <em>C. fritzi </em>Richard \&amp; Clark, 2014 and <em>C. solamulieres</em> Richard \&amp; Clark, 2014 are considered junior synonyms of <em>C. meridionalis.</em> The position of these species in the troublesome {\textquoteleft}<em>C. nilotica</em> complex{\textquoteright} is clarified and some species are synonymised. A key is provided to facilitate identification.</p>
},
	keywords = {16S rRNA, Indo-Pacific region, morphology},
	author = {de Mazancourt, Valentin and Marquet, G{\'e}rard and Klotz, Werner and Philippe Keith}
}
@article {5176,
	title = {Interplay between abiotic factors and species assemblages mediated by the ecosystem engineer Sabellaria alveolata (Annelida: Polychaeta)},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {200},
	year = {2018},
	abstract = {<p class="rtejustify"><em>Sabellaria alveolata </em>is a gregarious polychaete that uses sand particles to build three-dimensional structures known as reefs, fixed atop rocks or built on soft sediments. These structures are known to modify the local grain-size distribution and to host a highly diversified macrofauna, altered when the reef undergoes disturbances.<br />
The goal of this study was to investigate the different sedimentary and biological changes associated with the presence of a <em>S. alveolata </em>reef over two contrasting seasons (late winter and late summer), and how these changes were linked. Three different sediments were considered: the engineered sediment (the actual reef), the associated sediment (the soft sediment surrounding the reef structures) and a control soft sediment (i.e. no reef structures in close proximity). Univariate and multivariate comparisons of grain-size distribution, soft sediment characteristics (organic matter content, chlorophyll a, pheopigments and carbohydrate concentrations) and macrofauna were conducted between the different sediment types at both seasons and between the two seasons for each sediment type. A distance-based redundancy analyses (dbRDA) was used to investigate the link between the different environmental parameters and the macrofauna assemblages. Finally, we focused on a disturbance continuum of the engineered sediments proxied by an increase in the mud present in these sediments. The effects of a continuous and increasing disturbance on the associated fauna were investigated using pairwise beta diversity indices (S{\o}rensen and Bray-Curtis dissimilarities and their decomposition into turnover and nestedness). Results showed a significant effect of the reef on the local sediment distribution (coarser sediments compared to the control) and on the benthic primary production (higher in the associated sediments). At both seasons, <em>S. alveolata</em> biomass and sediment principal mode were the environmental parameters which best differentiated the engineered, associated and control sediment assemblages. These two parameters are under the ecosystem engineer{\textquoteright}s influence stressing its importance in structuring benthic macrofauna. Furthermore, in late summer but not in late winter, presence/absence and abundance based beta diversity were positively correlated to our disturbance proxy (mud content) a tendency driven by a species replacement and a rise in the associated fauna density.<br />
Our first set of results highlight the importance of <em>S. alveolata</em> reefs as benthic primary production enhancers via their physical structure and their biological activity. The results obtained using beta diversity indices emphasize the importance of recruitment in structuring the reef{\textquoteright}s macrofauna and {\textendash} paradoxically {\textendash} the ecological value of <em>S. alveolata </em>degraded forms as biodiversity and recruitment promoters.</p>
},
	doi = {doi.org/10.1016/j.ecss.2017.10.001},
	url = {https://doi.org/10.1016/j.ecss.2017.10.001},
	author = {Auriane Jones and Stanislas Dubois and Nicolas Desroy and J{\'e}r{\^o}me Fournier}
}
@article {5364,
	title = {Latitudinal Patterns in European Seagrass Carbon Reserves: Influence of Seasonal Fluctuations versus Short-Term Stress and Disturbance Events},
	journal = {Frontiers in Plant Science},
	volume = {9},
	year = {2018},
	abstract = {<p>Seagrass meadows form highly productive and valuable ecosystems in the marine environment. Throughout the year, seagrass meadows are exposed to abiotic and biotic variations linked to (i) seasonal fluctuations, (ii) short-term stress events such as, e.g., local nutrient enrichment, and (iii) small-scale disturbances such as, e.g., biomass removal by grazing. We hypothesized that short-term stress events and smallscale disturbances may affect seagrass chance for survival in temperate latitudes. To test this hypothesis we focused on seagrass carbon reserves in the form of starch stored seasonally in rhizomes, as these have been defined as a good indicator for winter survival. Twelve Zostera noltei meadows were monitored along a latitudinal<br />
gradient in Western Europe to firstly assess the seasonal change of their rhizomal starch content. Secondly, we tested the effects of nutrient enrichment and/or biomass removal on the corresponding starch content by using a short-term manipulative field experiment at a single latitude in the Netherlands. At the end of the growing season, we observed a weak but significant linear increase of starch content along the latitudinal gradient from south to north. This agrees with the contention that such reserves are essential for regrowth after winter, which is more severe in the north. In addition, we also observed a weak but significant positive relationship between starch content at the beginning of the growing season and past winter temperatures. This implies a lower regrowth potential after severe winters, due to diminished starch content at the beginning of the growing season. Short-term stress and disturbances<br />
may intensify these patterns, because our manipulative experiments show that when nutrient enrichment and biomass loss co-occurred at the end of the growing season, Z. noltei starch content declined. In temperate zones, the capacity of seagrasses to accumulate carbon reserves is expected to determine carbon-based regrowth after winter. Therefore, processes affecting those reserves might affect seagrass resilience. With increasing human pressure on coastal systems, short- and small-scale stress events are expected to become more frequent, threatening the resilience of seagrass ecosystems, particularly at higher latitudes, where populations tend to have an annual cycle highly dependent on their storage capacity.</p>
},
	doi = {doi: 10.3389/fpls.2018.00088},
	author = {L.M. Soissons and E.P. Haanstra and M.M. van Katwijk and R. Asmus and I. Auby and L. Barill{\'e} and F.G. Brun and P.G. Cardoso and Nicolas Desroy and J{\'e}r{\^o}me Fournier and F. Ganthy and J.M. Garmendia and Laurent Godet and T.F. Grilo and P. Kadel and B. Ondiviela and G. Peralta and A. Puente and M. Recio and L. Rigouin and M. Valle and P.M.J. Herman and T.J. Bouma}
}
@article {5611,
	title = {Marine sublittoral benthos fails to track temperature in response to climate change in a biogeographical transition zone},
	journal = {ICES Journal of Marine Science},
	year = {2018},
	abstract = {<p>Species ranges are shifting globally to track temperature changes in response to climate warming, with substantial variability among taxa. In<br />
the English Channel, a biogeographical transition zone between the cold temperate and warm temperate provinces of the North-East Atlantic, distribution shifts have been relatively well documented for plankton, fish and intertidal benthic organisms, but little information is available on sublittoral benthos. Following a description of the magnitude of the sea bottom temperature (SBT) rise, the changes in the distribution and occupancy of 65 benthic invertebrate species were analysed by comparing data collected throughout the English Channel at more<br />
than 200 stations sampled during a cool period in the 1960s{\textendash}1970s and at present in 2012{\textendash}2014. A non-uniform rise in SBT for the last three<br />
decades was observed at the regional scale, varying from 0.07 to 0.54C per decade. This rise differs from that reported for sea surface temperature<br />
(SST) in stratified areas suggesting that SBT should be used rather than SST to analyse responses of subtidal organisms to climate change. Despite shifts in both minimum and maximum sea bottom isotherms (2.5 and 3.2 km.year1, respectively), the distribution centroid shift of most species remained \&lt;1.0 km.year1, regardless of the average temperatures they usually experience. Conversely, decreases were observed in the occurrence of most cold-water species and increases were found in the occurrence of most warm-water species. These results suggest that ongoing climate change could lead to a decrease in benthic biodiversity at range limits, especially where connection routes are lacking for new migrants.</p>
},
	doi = {doi:10.1093/icesjms/fsy095},
	author = {Fran{\c c}ois Gaudin and Nicolas Desroy and Stanislas Dubois and Caroline Broudin and Louis Cabioch and J{\'e}r{\^o}me Fournier and Franck Gentil and Jacques Grall and C{\'e}line Houbin and Patrick Le Mao and Eric Thi{\'e}baut}
}
@article {7037,
	title = {Metabarcoding by capture using a single COI probe (MCSP) to identify and quantify fish species in ichthyoplankton swarms},
	journal = {PLOS ONE},
	volume = {13},
	year = {2018},
	month = {Dec-09-2018},
	pages = {e0202976},
	doi = {10.1371/journal.pone.0202976},
	url = {https://dx.plos.org/10.1371/journal.pone.0202976},
	author = {Mariac, C. and Vigouroux, Y. and Duponchelle, F. and Garc{\'\i}a-D{\'a}vila, C and Jesus Nu{\~n}ez-Rodriguez and Desmarais, E. and Renno, J.F.},
	editor = {Hajibabaei, Mehrdad}
}
@article {5632,
	title = {Metabarcoding by Capture using a Single COI Probe (MCSP) to identify and quantify fish species in plankton swarms},
	journal = {PLoS ONE },
	volume = {13},
	year = {2018},
	pages = {e0202976},
	abstract = {<p class="rtejustify">The ability to determine the composition and relative frequencies of fish species in large ichthyoplankton swarms could have extremely important ecological applications However, this task is currently hampered by methodological limitations. We proposed a new method for Amazonian species based on hybridization capture of the COI gene DNA from a distant species (Danio rerio), absent from our study area (the Amazon basin). The COI sequence of this species is approximately equidistant from all COI of Amazonian species available. By using this sequence as probe we successfully facilitated the simultaneous identification of fish larvae belonging to the order Siluriformes and to the Characiformes represented in our ichthyoplankton samples. Species relative frequencies, estimated by the number of reads, showed almost perfect correlations with true frequencies estimated by a Sanger approach, allowing the development of a quantitative approach. We also proposed a further improvement to a previous protocol, which enables lowering the sequencing effort by 40 times. This new Metabarcoding by Capture using a Single Probe (MCSP) methodology could have important implications for ecology, fisheries management and conservation in fish biodiversity hotspots worldwide. Our approach could easily be extended to other plant and animal taxa.</p>
},
	doi = {https://doi.org/10.1371/journal.pone.0202976},
	url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0202976},
	author = {Mariac, C{\'e}dric and Vigouroux, Y. and Fabrice Duponchelle and Garc{\'\i}a-D{\'a}vila, C and Nu{\~n}ez L. and Desmarais, E and Renno, Jean-Francois}
}
@article {6931,
	title = {Microhabitat characteristics of Stegastes planifrons and S. adustus territories},
	journal = {Environmental Biology of Fishes},
	volume = {101},
	year = {2018},
	month = {Jan-03-2018},
	pages = {441 - 448},
	issn = {0378-1909},
	doi = {10.1007/s10641-017-0709-8},
	url = {http://link.springer.com/10.1007/s10641-017-0709-8},
	author = {Charlotte R. Dromard and Bouchon-Navaro, Yolande and Cordonnier, S{\'e}bastien and Harmelin-Vivien, Mireille and Bouchon, Claude}
}
@article {6751,
	title = {Migration behaviour and escapement of European silver eels from a large lake and wetland system subject to water level management (Grand-Lieu Lake, France): New insights from regulated acoustic telemetry data},
	journal = {Ecology of Freshwater Fish},
	volume = {27},
	year = {2018},
	pages = {570-579},
	abstract = {Current knowledge about the downstream migration of sexually mature European eels (Anguilla\&nbsp;anguilla) remains incomplete, particularly in still water habitats such as lakes and wetlands subject to water level management. However, for the management of this endangered species, it is important to understand migration dynamics, and contribution to the breeding stock. This study aimed to assess the parameters that trigger and guide the migration of silver eels in the largest floodplain lake and associated wetlands in France (the sluice regulated Grand-Lieu Lake). A telemetry survey of 50 acoustic and PIT-tagged female silver eels was performed during the 2015{\textendash}2016 migration period. We deployed a novel telemetric approach, using receivers to delimit several restricted virtual boxes to determine the instantaneous location of individuals and to transform simple discrete telemetric data into presence/absence data. The low numbers leaving the lake centre are probably explained by the lack of orienting water flows or other environmental clues, but whilst the fate of 34\% (17/50) of the tagged eels is unknown, 18\% (9/50) were caught by commercial fishermen. Modelling showed that detections were not clearly associated with environmental factors typically involved in riverine migrations (e.g. current velocity, atmospheric pressure and temperature) but they were particularly associated with higher and increasing water levels and, for eels exiting the lake, a sharp increase when sluice gates were opened to an effective gap of \&gt;75\&nbsp;cm. It is concluded that management of water levels and sluice gate opening during the migration period might aid escapement of silver eels.},
	keywords = {Anguilla~anguilla, cues, silver eel migration, triggers},
	doi = {10.1111/eff.12371},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/eff.12371},
	author = {Thomas Trancart and Eric Feunteun and Danet, Valentin and Alexandre Carpentier and Mazel, Virgile and Charrier, Fabien and Druet, Morgan and Anthony Acou}
}
@article {5924,
	title = {A new species of Schismatogobius (Teleostei: Gobiidae) from Halmahera (Indonesia)},
	journal = {Cybium},
	volume = {42},
	year = {2018},
	pages = {195-200},
	abstract = {<p>\&nbsp;</p>

<p>\&nbsp;Anew species of Schismatogobius, a freshwater goby, is described from Halmahera (Indonesia). It differs from other species belonging to the genus by a high percentage of genetic divergence in partial COIgene (652 bp) and by several characters, including the number of pectoral fin rays, the pattern of the ventral surface of the head, the pectoral fin colour pattern and the jaw length/head length ratio of male and female.</p>
},
	keywords = {Gobiidae, Halmahera, Indonesia, New species, Schismatogobius},
	author = {Philippe Keith and Darhuddin, H. and Limmon, G and Hubert, N}
}
@article {5310,
	title = {Nutritional composition of suspended particulate matter in a tropical mangrove creek during a tidal cycle (Can Gio, Vietnam)},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {200},
	year = {2018},
	pages = {126-130},
	doi = {10.1016/j.ecss.2017.10.017},
	url = {https://doi.org/10.1016/j.ecss.2017.10.017},
	author = {Frank David and Cyril Marchand and Pierre Taillardat and Th{\`a}nh-Nho, N and Tarik Meziane}
}
@article {5864,
	title = {{OZCAR}: The French Network of Critical Zone Observatories},
	journal = {Vadose Zone Journal},
	volume = {17},
	year = {2018},
	doi = {10.2136/vzj2018.04.0067},
	url = {https://doi.org/10.2136/vzj2018.04.0067},
	author = {J. Gaillardet and I. Braud and F. Hankard and S. Anquetin and O. Bour and N. Dorfliger and J.R. de Dreuzy and S. Galle and C. Galy and S. Gogo and L. Gourcy and F. Habets and F. Laggoun and L. Longuevergne and T. Le Borgne and F. Naaim-Bouvet and G. Nord and V. Simonneaux and D. Six and T. Tallec and C. Valentin and Gwena{\"e}l Abril and P. Allemand and A. Ar{\`e}nes and B. Arfib and L. Arnaud and N. Arnaud and P. Arnaud and S. Audry and V. Bailly Comte and C. Batiot and A. Battais and H. Bellot and E. Bernard and C. Bertrand and H. Bessi{\`e}re and S. Binet and J. Bodin and X. Bodin and L. Boithias and J. Bouchez and B. Boudevillain and I. Bouzou Moussa and F. Branger and J. J. Braun and P. Brunet and B. Caceres and D. Calmels and B. Cappelaere and H. Celle-Jeanton and F. Chabaux and K. Chalikakis and C. Champollion and Y. Copard and C. Cotel and P. Davy and P. Deline and G. Delrieu and J. Demarty and C. Dessert and M. Dumont and C. Emblanch and J. Ezzahar and M. Est{\`e}ves and V. Favier and M. Faucheux and N. Filizola and P. Flammarion and P. Floury and O. Fovet and M. Fournier and A. J. Francez and L. Gandois and C. Gascuel and E. Gayer and C. Genthon and M. F. G{\'e}rard and D. Gilbert and I. Gouttevin and M. Grippa and G. Gruau and A. Jardani and L. Jeanneau and J. L. Join and H. Jourde and F. Karbou and D. Labat and Yvan Lagadeuc and E. Lajeunesse and R. Lastennet and W. Lavado and E. Lawin and T. Lebel and C. Le Bouteiller and C. Legout and Y. Lejeune and E. Le Meur and N. Le Moigne and J. Lions and A. Lucas and J. P. Malet and C. Marais-Sicre and J. C. Mar{\'e}chal and C. Marlin and P. Martin and J. Martins and J. M. Martinez and N. Massei and A. Mauclerc and N. Mazzilli and J. Mol{\'e}nat and P. Moreira-Turcq and E. Mougin and S. Morin and J. Ndam Ngoupayou and G. Panthou and C. Peugeot and G. Picard and M. C. Pierret and G. Porel and A. Probst and J. L. Probst and A. Rabatel and D. Raclot and L. Ravanel and F. Rejiba and P. Ren{\'e} and O. Ribolzi and J. Riotte and A. Rivi{\`e}re and H. Robain and L. Ruiz and J. M. Sanchez-Perez and W. Santini and S. Sauvage and P. Schoeneich and J. L. Seidel and M. Sekhar and O. Sengtaheuanghoung and N. Silvera and M. Steinmann and A. Soruco and G. Tallec and E. Thibert and D. Valdes Lao and C. Vincent and D. Viville and P. Wagnon and R. Zitouna}
}
@article {7852,
	title = {Partial migration in inexperienced pied avocets <i>Recurvirostra avosetta</i>               : distribution pattern and correlates},
	journal = {Journal of Avian Biology},
	volume = {49},
	year = {2018},
	month = {Jan-06-2018},
	doi = {10.1111/jav.01549},
	url = {http://doi.wiley.com/10.1111/jav.01549},
	author = {Chambon, R{\'e}mi and Dugravot, S{\'e}bastien and Paillisson, Jean-Marc and Lemesle, Jean-Christophe and Fr{\'e}d{\'e}ric Ysnel and G{\'e}linaud, Guillaume}
}
@book {5650,
	title = {Peces de consumo de la Amazon{\'\i}a Peruana},
	year = {2018},
	pages = {218},
	edition = {Instituto de Investigaciones de la Amazon{\'\i}a Peruana (IIAP), Iquitos, Per{\'u}},
	author = {Garc{\'\i}a-D{\'a}vila, C and Sanchez, H. and Flores, M and Mejia, J. and Angulo, C. and Castro-Ruiz, D. and Estivals, G. and Garcia, Aurea and Vargas, G. and Nolorbe, C. and Jesus Nu{\~n}ez-Rodriguez and Mariac, C{\'e}dric and Fabrice Duponchelle and Renno, Jean-Francois}
}
@article {8406,
	title = {Platichthys solemdali sp. nov. (Actinopterygii, Pleuronectiformes): A New Flounder Species From the Baltic SeaImage_1.tifTable_1.DOCX},
	journal = {Frontiers in Marine Science},
	volume = {5},
	year = {2018},
	month = {Nov-07-2018},
	doi = {10.3389/fmars.2018.0022510.3389/fmars.2018.00225.s00110.3389/fmars.2018.00225.s002},
	url = {https://www.frontiersin.org/article/10.3389/fmars.2018.00225/full},
	author = {Momigliano, Paolo and DENYS, Ga{\"e}l P. J. and Jokinen, Henri and Meril{\"a}, Juha}
}
@article {5631,
	title = {Population dynamics of Prochilodus nigricans (Characiformes: Prochilodontidae) in the Putumayo River},
	journal = {Neotropical Ichthyology},
	volume = {16},
	year = {2018},
	pages = {e170139},
	abstract = {<p class="rtejustify">The black prochilodus (<em>Prochilodus nigricans</em>) is one of the most landed scaled fish species of the middle and upper parts of the Putumayo River, in the tri-national area between Colombia, Ecuador and Peru. Despite its importance, biological information about this species is too scant to guide fisheries management in this portion of the Colombian Amazon. In this study, 10884 individuals were sampled in the fish markets of Puerto Legu{\'\i}zamo between 2009 and 2017. This sampling was used to document reproductive patterns, but also growth and mortality parameters from length frequency distributions. The size at which all fish were mature was 22 cm Ls, which should be the established as the minimum size of capture to ensure that all fish have had a chance to reproduce before being caught. Growth and mortality parameters indicated a slower growth in the Putumayo than in other Amazonian rivers and a relatively high exploitation rate.</p>

<p class="rtejustify"><em>Keywords</em>:\&nbsp;Black prochilodus; Colombia; Growth; Mortality; Reproduction</p>
},
	doi = {http://dx.doi.org/10.1590/1982-0224-20170139},
	author = {Bonilla-Castillo, C S and Agudelo C{\'o}rdoba, E and G{\'o}mez, G and Fabrice Duponchelle}
}
@article {8407,
	title = {Presence of larvae of lampreys, Lampetra sp. (Cephalaspidomorphi, Petromyzontiformes), in a French Catalan basin},
	journal = {Cybium},
	volume = {42},
	year = {2018},
	pages = {216-218},
	abstract = {Des ammoc{\`e}tes de lamproies ont {\'e}t{\'e} r{\'e}cemment captur{\'e}es pour la premi{\`e}re fois dans un cours d{\textquoteright}eau de Catalogne fran{\c c}aise, la T{\^e}t. Les identifications morphologique et mol{\'e}culaire ont d{\'e}montr{\'e} que ces ammoc{\`e}tes appartiennent au complexe [Lampetra fluviatilis / Lampetra planeri]. Les lamproies et leurs fray{\`e}res {\'e}tant prot{\'e}g{\'e}es en France, cette {\'e}tude aura une incidence sur la gestion du cours d{\textquoteright}eau de la T{\^e}t.},
	author = {Arsento, R{\'e}my and Richarte, K{\'e}vin and Fonteneau, Andr{\'e} and Denys, Ga{\"e}l}
}
@article {6857,
	title = {Processus morphodynamiques et s{\'e}dimentaires dans les mangroves en {\'e}rosion de Mayotte, oc{\'e}an Indien},
	journal = {VertigO},
	year = {2018},
	month = {May-09-2018},
	doi = {10.4000/vertigo10.4000/vertigo.2039110.4000/vertigo.20531},
	url = {http://journals.openedition.org/vertigo},
	author = {Jeanson, Matthieu and Franck Dolique and Anthony, Edward~J.}
}
@article {5629,
	title = {Review of fisheries resource use and status in the Madeira River basin (Brazil, Bolivia and Peru) before the hydroelectric dam{\textquoteright}s completion},
	journal = {Reviews in Fisheries Science \& Aquaculture },
	volume = {26},
	year = {2018},
	pages = {494-514},
	abstract = {<p class="rtejustify">The Madeira River, which drains one of the major tributary river basins of the upper Amazon, contributes to small-scale fisheries in Peru, Bolivia, and Brazil. This paper provides a base-line of fisheries resources and their status in six sub-basins of the Madeira River: upper Madre de Dios River basin (Peru), Beni and Mamor{\'e} River basins (Bolivia), It{\'e}nez or Guapor{\'e} River basin (Bolivia and Brazil), middle Madeira, and (two sections of the) lower Madeira River (Brazil). Data were collected between 2009 and 2011, before the completion of two hydroelectric dams in the Brazilian portion of the basin. Biophysical, social, and biological indicators were used to characterize the fisheries. The results show an overall small-scale multispecies fisheries pattern but with notorious differences between the Madeira sub-basins. The Beni and Mamor{\'e} sub-basin shows the largest flooded area, with associated higher total fisheries yields. Trophic level of the catch, diversity, and mean weight of fish caught were shown to be very sensitive to exploitation level, river water type (white or clear water), flooded area, and the introduction of\&nbsp;<em>Arapaima gigas</em> in Bolivia. The Bolivian fisheries are characterized by less exploited stocks, whereas stocks in Peru and Brazil show signs of intensive exploitation, resulting in fisheries of smaller bodied, lower trophic-level species. Landing data in the upper basin show a predominant reliance on migrating fish resources, which might be vulnerable to the construction of dams. These data serve as a baseline to evaluate anthropogenic impacts on the Madeira River basin fisheries in the future.</p>

<p class="rtejustify">KEYWORDS:\&nbsp;Amazon,\&nbsp;freshwater ecosystem,\&nbsp;trophic level,\&nbsp;diversity,\&nbsp;fish catch</p>
},
	doi = {The goliath catfish Brachyplatystoma rousseauxii has crucial economical and ecological functions in the Amazon basin. Although its life history characteristics have been studied in the Amazon, there is little information in the Madeira River basin, which },
	author = {Doria, C R C and Fabrice Duponchelle and Lima, M A L and Garc{\'\i}a V{\'a}squez, A and Carvajal-Vallejos, F and Coca M{\'e}ndez, C and Catarino, M F and Carlos E.C. Freitas and Vega, B and Van Damme, P A}
}
@article {5615,
	title = {Revisiting the Organic Template Model through the Microstructural Study of Shell Development in Pinctada margaritifera, the Polynesian Pearl Oyster},
	journal = {Minerals},
	volume = {8},
	year = {2018},
	month = {09/2018},
	pages = {370},
	abstract = {A top-down approach to the mineralized structures and developmental steps that can be separated in the shells of Pinctada margaritifera was carried out. Detailed characterizations show that each of the two major layers usually taken into account (the outer prismatic layer and the inner nacreous layer) is actually the result of a complex process during which the microstructural patterns were progressively established. From its early growing stages in the deeper part of the periostracal grove up to the formation of the most inner nacreous layers, this species provides a demonstrative case study illustrating the leading role of specifically secreted organic structures as determinants of the crystallographic properties of the shell-building units. Gathering data established at various observational scales ranging from morphology to the nanometer level, this study allows for a reexamination of the recent and current biomineralization models.},
	keywords = {biocrystallization model, biomineralization, Mollusca, shell development},
	doi = {https://doi.org/10.3390/min8090370},
	author = {Jean-Pierre Cuif and Yannicke Dauphin and Gilles Luquet and Kadda Medjoubi and Andrea Somogyi and Alberto Perez-Huerta}
}
@article {8405,
	title = {S7 characterization of Western European pikes Esox spp. (Actinopterygii, Esociformes)},
	journal = {Cybium},
	volume = {42},
	year = {2018},
	pages = {221-228},
	abstract = {The comparison of a 1635 bp fragment of the first intron of the S7 ribosomal protein coding gene, a commonly used phylogenetic marker, for specimens from the three European pike species Esox aquitanicus, Esox cisalpinus and Esox lucius highlights diagnostic sites and indels constituting molecular synapomorphies. Both the sequence alignment and the phylogenetic tree discriminate these three species, even with a short sequence fragment. Three Esox lucius haplogroups can be separated. These haplogroups might correspond to the evolutionary lineages highlighted by previous mitochondrial studies. Finally this study confirms hybridization between Esox aquitanicus and Esox lucius, but also the absence of geographical structure between Esox lucius haplogroups in France following restocking from East European piscicultures. The S7 marker is excellent for molecular identification, and could be used for environmental DNA.},
	author = {Denys, Ga{\"e}l P.J. and Lauga, Th{\'e}o and Delmastro, Giovanni B. and Dettai, Agn{\`e}s}
}
@article {6752,
	title = {Silver eel downstream migration in the River Rhine, route choice, and its impacts on escapement: A 6-year telemetry study in a highly anthropized system},
	journal = {Ecological Engineering},
	volume = {123},
	year = {2018},
	pages = {202 - 211},
	abstract = {Several routes are available for the downstream migration of silver eels in the river Rhine system. Very different effects on migration success can result from this choice, such as speed and migration duration or escapement rate. We studied the downstream migration of silver eels in a river section with two different routes. The first route is the initial and old riverbed, with two dams equipped with two rather small or medium sized hydropower plants (HPPs) located at the beginning and at the exit of the bypass stretch. Both HPPs have small bar spacing (10 mm and 20 mm, respectively) and the second HPP has two downstream bypasses. The second route is a power canal, supplying four major HPPs (maximum discharge capacity = 1400 m3 s-1) and a nuclear power plant with cooling water. Firstly, this study focused on highlighting the factors influencing route choice. Secondly, we focused on the consequences of this choice. We demonstrate that water current management in the old riverbed at the study site had a 40\% higher negative effect on eel survival than that by a consecutive passage in four turbines.},
	keywords = {Escapement, Migration, Path selection, Rhine river, Silver-eel, Telemetry},
	issn = {0925-8574},
	doi = {https://doi.org/10.1016/j.ecoleng.2018.09.002},
	url = {http://www.sciencedirect.com/science/article/pii/S0925857418303318},
	author = {Thomas Trancart and St{\'e}phane T{\'e}tard and Anthony Acou and Eric Feunteun and Fr{\'e}d{\'e}ric Schaeffer and Eric de Oliveira}
}
@article {5491,
	title = {Small and large spatial scale coexistence of ctenid spiders in a neotropical forest (French Guiana)},
	journal = {Tropical Zoology},
	volume = {31},
	year = {2018},
	month = {04/2018},
	pages = {85-98},
	abstract = {While spiders constitute the most abundant and diverse arthropods in many habitats, they remained under-studied, especially in tropical rainforests. The goal of this study is to assess the spatial distribution of the spider family Ctenidae by assessing associations of species diversity and population traits among different habitat conditions. Fieldwork was carried out during 2013 in habitats varying in flooding frequency (plateau vs. flooded forest) and elevation (inselberg vs. lowland) in the Nouragues National Natural Reserve, French Guiana. Assemblage composition, population structure, and trait measurements of one dominant species were assessed using hand collection in replicated quadrats. We found strong effects on ctenid assemblages attributable to both elevation and flooding, with changes in relative abundance of species among habitats, but few correlated densities between species. At the population level, main differences in species distribution between and within habitats were detected only when juveniles were taken into account. No effect of elevation was found on the measurements of traits of the dominant species, but legs were proportionally shorter in flooded habitats, suggesting reduced active dispersal in these habitats. Our study highlights the value of complementary of measures of diversity and traits at different biological scales in Ctenidae.},
	keywords = {Araneae, flooding, Guianese shield, inselberg, juveniles},
	doi = {https://doi.org/10.1080/03946975.2018.1448531},
	url = {https://www.tandfonline.com/doi/full/10.1080/03946975.2018.1448531},
	author = {Petillon, J and Leroy, Boris and Djoudi, EA and Vedel, V}
}
@article {8138,
	title = {Small and large spatial scale coexistence of ctenid spiders in a neotropical forest (French Guiana)},
	journal = {Tropical Zoology},
	volume = {31},
	year = {2018},
	month = {Mar-04-2018},
	pages = {85 - 98},
	issn = {0394-6975},
	doi = {10.1080/03946975.2018.1448531},
	url = {https://www.tandfonline.com/doi/full/10.1080/03946975.2018.1448531},
	author = {P{\'e}tillon, Julien and Leroy, Boris and Djoudi, El Aziz and VEDEL, Vincent}
}
@article {5962,
	title = {Some histological data on bone and teeth in the grey notothen (Lepidonotothen squamifrons) and in the mackerel icefish (Champsocephalus gunnari) (Notothenioidei; Perciformes; Teleostei)},
	journal = {Cybium},
	volume = {42},
	year = {2018},
	pages = {091-097},
	doi = {10.26028/cybium/2018-421-009},
	url = {http://sfi-cybium.fr/fr/some-histological-data-bone-and-teeth-grey-notothen-lepidonotothen-squamifrons-and-mackerel-icefish},
	author = {Meunier, Francois J. and Lecomte, Fr{\'e}d{\'e}rique and Guy Duhamel}
}
@article {7891,
	title = {Spider assemblage structure in a neotropical rainforest-inselberg complex: ecological and methodological insights from a small-scale intensive survey},
	journal = {Journal of Tropical Ecology},
	volume = {59},
	year = {2018},
	pages = {21-34},
	keywords = {Araneae, composition, day-time, French Guiana, non-parametric estimators, richness, sampling method},
	url = {https://hal.inrae.fr/hal-02629375},
	author = {Privet, Ka{\"\i}na and Courtial, Cyril and Decaens, Thibaud and Djoudi, El Aziz and VEDEL, Vincent and Fr{\'e}d{\'e}ric Ysnel and P{\'e}tillon, Julien}
}
@article {6746,
	title = {Stable isotopes as tracers can reveal resource allocation in juvenile golden gray mullets (Liza aurata, Risso, 1810)},
	journal = {Journal of Experimental Marine Biology and Ecology},
	volume = {503},
	year = {2018},
	month = {Jan-06-2018},
	pages = {72 - 79},
	abstract = {Studies on the nutritional physiology of predator fish in the marine environment have contributed to our understanding of how they adapt to the environment and how they have evolved. Despite the fact that herbivorous and omnivorous fish species are numerous and play a significant role in the ecosystem, there is little information on how they process nutrients and how these are allocated to different tissues. This information could be particularly important for the juvenile stages, when small-sized fish are under high predation pressure and have a limited capability to intake and digest large quantities of food. The mullet Liza aurata ingests surface sediment and obtains its nutritional requirements from the organisms associated with the sediment, including microalgae and bacteria or small invertebrates. This paper examines how the carbon and nitrogen derived from benthic micro-organisms are allocated to the liver and muscle tissues of newborn (young-of-the-year, YOY) and one-year-old (OYO) individuals. After the animals were left feeding on 13C-enriched microalgae and 15N-enriched bacteria for 1 h, we traced the 13C and 15N in the liver and muscle tissues as well as in the blood and the gut. The YOY allocated 99\% of the 13C and 88\% of the 15N to the muscles, while the liver had a negligible amount of tracers (0.4\% and 11\% for 13C and 15N). Conversely, in the OYO experiment, the tracers were uniformly distributed throughout the muscle and liver (57\% of 13C and 45\% of 15N were found in the muscle, whereas 43\% of 13C and 55\% of 15N were in the liver). Negligible amounts were traced in the blood (\&lt;0.1\%), while a part of the tracers was not assimilated and remained in the gut of both YOY and OYO fish. These results indicated a size-related shift in resource allocation during first year of growth of L. aurata, probably related to changes in the survival strategies among juveniles. Our results also indicated that stable isotope enrichment can be a helpful tool for studying resource allocation in fish.},
	issn = {00220981},
	doi = {10.1016/j.jembe.2018.01.009},
	url = {https://www.sciencedirect.com/science/article/pii/S0022098117301971},
	author = {Como, S. and Alexandre Carpentier and Rossi, F. and Christine Dupuy and Richard, P. and Eric Feunteun and Lefran{\c c}ois, C.}
}
@article {5515,
	title = {Strengths, weaknesses, and opportunities of French research in trophic ecology},
	journal = {Comptes Rendus Biologies},
	year = {2018},
	pages = {-},
	abstract = {<p class="rtejustify">The French National Institute of Ecology and Environment (INEE) aims at fostering pluridisciplinarity in Environmental Science and, for that purpose, funds ex muros research groups (GDR) on thematic topics. Trophic ecology has been identified as a scientific field in ecology that would greatly benefit from such networking activity, as being profoundly scattered. This has motivated the seeding of a GDR, entitled {\^a}GRET{\^a}. The contours of the GRET{\textquoteright}s action, and its ability to fill these gaps within trophic ecology at the French national scale, will depend on the causes of this relative scattering. This study relied on a nationally broadcasted poll aiming at characterizing the field of trophic ecology in France. Amongst all the unique individuals that fulfilled the poll, over 300 belonged at least partly to the field of trophic ecology. The sample included all French public research institutes and career stages. Three main disruptions within the community of scientist in trophic ecology were identified. The first highlighted the lack of interfaces between microbial and trophic ecology. The second evidenced that research questions were strongly linked to single study fields or ecosystem type. Last, research activities are still quite restricted to the ecosystem boundaries. All three rupture points limit the conceptual and applied progression in the field of trophic ecology. Here we show that most of the disruptions within French Trophic Ecology are culturally inherited, rather than motivated by scientific reasons or justified by socio-economic stakes. Comparison with the current literature confirms that these disruptions are not necessarily typical of the French research landscape, but instead echo the general weaknesses of the international research in ecology. Thereby, communication and networking actions within and toward the community of trophic ecologists, as planned within the GRET{\textquoteright}s objectives, should contribute to fill these gaps, by reintegrating microbes within trophic concepts and setting the seeds for trans- and meta-ecosystemic research opportunities. Once the community of trophic ecologists is aware of the scientific benefit in pushing its boundaries forwards, turning words and good intentions into concrete research projects will depend on the opportunities to obtain research funding.</p>
},
	keywords = {Community},
	issn = {1631-0691},
	doi = {https://doi.org/10.1016/j.crvi.2018.05.001},
	url = {https://www.sciencedirect.com/science/article/pii/S1631069118300830},
	author = {Marie-Elodie Perga and Michael Danger and Dubois, Stanislas and Cl{\'e}mentine Fritch and C{\'e}dric Gaucherel and C{\'e}dric Hubas and Franck Jabot and Lacroix, G{\'e}rard and S{\'e}bastien Lefebvre and P. Marmonier and Alexandre Bec}
}
@article {5476,
	title = {Structure and composition of Unio pictorum shell: arguments for the diversity of the nacroprismatic arrangement in molluscs.},
	journal = {Journal of Microscopy},
	volume = {270},
	year = {2018},
	month = {05/2018},
	pages = {156-169},
	type = {Journal article},
	abstract = {Mollusc shells are complex organomineral structures, the arrangement and composition depending on the species. Most studies are dedicated to shells composed of an aragonite nacreous and a calcite prismatic layer, so the nacreous prismatic model based on Pinctada and Atrina-Pinna. Here, we studied the micro- and nanostructure, the mineralogy and composition of a nacroprismatic bivalve species: Unio pictorum. The prismatic layer of Unio is aragonite, and the inner structure of the prismatic units strongly differs from those of the calcitic layers. The shape of the prisms varies depending on their growth stage. The first layers of nacre are similar to those of gastropods (columnar nacre), then evolve towards the typical bivalve arrangement (sheet nacre). Na, Sr, Mg, P and S are present in both prisms and nacre. The organic prismatic envelopes are rich in sulphur amino acids, whereas organic sulphate is present within the prisms and the nacreous tablets. P is present as phosphate, probably a mixture of organic and mineral complex. Chemical distribution maps confirm the absence of an organic membrane between the nacre and the prisms. The comparison of the structure, mineralogy and composition of Unio pictorum and different species show the diversity of nacroprismatic shells, and that these features are taxonomically dependent.},
	author = {Dauphin, Y and Luquet, G and Salom{\'e}, M and Bellot-Gurlet, L and Cuif, JP}
}
@article {7180,
	title = {Subtidal Microphytobenthos: A Secret Garden Stimulated by the Engineer Species Crepidula fornicata},
	journal = {Frontiers in Marine Science},
	volume = {5},
	year = {2018},
	month = {Jun-12-2019},
	doi = {10.3389/fmars.2018.00475},
	url = {https://www.frontiersin.org/article/10.3389/fmars.2018.00475/full},
	author = {Androuin, Thibault and Polerecky, Lubos and Decottignies, Priscilla and Dubois, Stanislas F. and Dupuy, Christine and C{\'e}dric Hubas and Jesus, Bruno and Le Gall, Erwan and Marzloff, Martin P. and Carlier, Antoine}
}
@article {6806,
	title = {Surface ocean pH variations since 1689 CE and recent ocean acidification in the tropical South Pacific},
	journal = {Nature Communications},
	volume = {9},
	year = {2018},
	month = {Jan-12-2018},
	abstract = {Increasing atmospheric CO2 from man-made climate change is reducing surface ocean pH. Due to limited instrumental measurements and historical pH records in the world{\textquoteright}s oceans, seawater pH variability at the decadal and centennial scale remains largely unknown and requires documentation. Here we present evidence of striking secular trends of decreasing pH since the late nineteenth century with pronounced interannual to decadal{\textendash}interdecadal pH variability in the South Pacific Ocean from 1689 to 2011 CE. High-amplitude oceanic pH changes, likely related to atmospheric CO2 uptake and seawater dissolved inorganic carbon fluctuations, reveal a coupled relationship to sea surface temperature variations and highlight the marked influence of El Ni{\~n}o/Southern Oscillation and Interdecadal Pacific Oscillation. We suggest changing surface winds strength and zonal advection processes as the main drivers responsible for regional pH variability up to 1881 CE, followed by the prominent role of anthropogenic CO2 in accelerating the process of ocean acidification.},
	doi = {10.1038/s41467-018-04922-1},
	url = {https://hal.archives-ouvertes.fr/hal-01839951},
	author = {Wu, Henry C. and Dissard, Delphine and Douville, Eric and Blamart, Dominique and Bordier, Louise and Tribollet, Aline and Le Cornec, Florence and Pons-Branchu, Edwige and Dapoigny, Arnaud and Claire E. Lazareth}
}
@article {5583,
	title = {Tachykinin-3 Genes and Peptides Characterized in a Basal Teleost, the European Eel: Evolutionary Perspective and Pituitary Role.},
	journal = {Frontiers in Endocrinology},
	volume = {9},
	year = {2018},
	pages = {304},
	author = {Campo, Aurora and Anne-Gaelle Lafont and Lefranc, Benjamin and Leprince, J{\'e}r{\^o}me and Tostivint, Herv{\'e} and Kamech, Nedia and Sylvie Dufour and Karine Rousseau}
}
@article {6708,
	title = {Toxicological effects of CdSe nanocrystals on the marine diatom Phaeodactylum tricornutum: The first mass spectrometry-based proteomic approach},
	journal = {Ecotoxicology and Environmental Safety},
	volume = {152},
	year = {2018},
	month = {Jan-05-2018},
	pages = {78 - 90},
	issn = {01476513},
	doi = {10.1016/j.ecoenv.2018.01.043},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0147651318300514?via\%3Dihub},
	author = {Poirier, Isabelle and Pallud, Marie and Kuhn, Lauriane and Hammann, Philippe and Demorti{\`e}re, Arnaud and Jamali, Arash and Chicher, Johana and Christelle Caplat and Gallon, R{\'e}gis Kevin and Bertrand, Martine}
}
@article {9383,
	title = {Trace metals partitioning between particulate and dissolved phases along a tropical mangrove estuary (Can Gio, Vietnam)},
	journal = {Chemosphere},
	volume = {196},
	year = {2018},
	pages = {311{\textendash}322},
	abstract = {Mangroves can be considered as biogeochemical reactors along (sub)tropical coastlines, acting both as sinks or sources for trace metals depending on environmental factors. In this study, we characterized the role of a mangrove estuary, developing downstream a densely populated megacity (Ho Chi Minh City, Vietnam), on the fate and partitioning of trace metals. Surface water and suspended particulate matter were collected at four sites along the estuarine salinity gradient during 24 h cycling in dry and rainy seasons. Salinity, pH, DO, TSS, POC, DOC, dissolved and particulate Fe, Mn, Cr, As, Cu, Ni, Co and Pb were measured. TSS was the main trace metals carrier during their transit in the estuary. However, TSS variations did not explain the whole variability of metals distribution. Mn, Cr and As were highly reactive metals while the other metals (Fe, Ni, Cu, Co and Pb) presented stable log KD values along the estuary. Organic matter dynamic appeared to play a key role in metals fractioning. Its decomposition during water transit in the estuary induced metal desorption, especially for Cr and As. Conversely, dissolved Mn concentrations decreased along the estuary, which was suggested to result from Mn oxidative precipitation onto solid phase due to oxidation and pH changes. Extra sources as pore-water release, runoff from adjacent soils, or aquaculture effluents were suggested to be involved in trace metal dynamic in this estuary. In addition, the monsoon increased metal loads, notably dissolved and particulate Fe, Cr, Ni and Pb.},
	issn = {00456535},
	doi = {10.1016/j.chemosphere.2017.12.189},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0045653517321677},
	author = {Thanh-Nho, Nguyen and Strady, Emilie and Nhu-Trang, Tran{\textendash}Thi and Frank David and Marchand, Cyril}
}
@article {8982,
	title = {Trophic cues promote secondary migrations of bivalve recruits in a highly dynamic temperate intertidal system},
	journal = {Ecosphere},
	volume = {9},
	year = {2018},
	month = {Apr-12-2018},
	pages = {e02510},
	issn = {2150-8925},
	doi = {10.1002/ecs2.2018.9.issue-1210.1002/ecs2.2510},
	url = {https://onlinelibrary.wiley.com/toc/21508925/9/12},
	author = {Foret, Martin and Barbier, Pierrick and Tremblay, Rejean and Tarik Meziane and Neumeier, Urs and Duvieilbourg, Eric and Olivier, Fr{\'e}d{\'e}ric}
}
@article {8981,
	title = {Trophic cues promote secondary migrations of bivalve recruits in a highly dynamic temperate intertidal system},
	journal = {Ecosphere},
	volume = {9},
	year = {2018},
	month = {Apr-12-2018},
	pages = {e02510},
	issn = {2150-8925},
	doi = {10.1002/ecs2.2018.9.issue-1210.1002/ecs2.2510},
	url = {https://onlinelibrary.wiley.com/toc/21508925/9/12},
	author = {Foret, Martin and Barbier, Pierrick and Tremblay, Rejean and Meziane, Tarik and Neumeier, Urs and Duvieilbourg, Eric and Olivier, Fr{\'e}d{\'e}ric}
}
@article {5922,
	title = {Trophic ecology of speckled peacock bass Cichla temensis Humboldt 1821 in the middle Negro River, Amazon, Brazil},
	journal = {Ecology of Freshwater Fish},
	volume = {27},
	year = {2018},
	pages = {1076{\textendash}1086},
	doi = {10.1111/eff.12416},
	url = {https://doi.org/10.1111/eff.12416},
	author = {Jamerson Aguiar-Santos and Pieter A. P. deHart and Marc Pouilly and Carlos E.C. Freitas and Fl{\'a}via K. Siqueira-Souza}
}
@article {5923,
	title = {The unique functioning of a pre-Columbian Amazonian floodplain fishery},
	journal = {Scientific Reports},
	volume = {8},
	year = {2018},
	doi = {10.1038/s41598-018-24454-4},
	url = {https://doi.org/10.1038/s41598-018-24454-4},
	author = {Rumsa{\"\i}s Blatrix and Bruno Roux and Philippe B{\'e}arez and Gabriela Prestes-Carneiro and Marcelo Amaya and Jose Luis Aramayo and Leonor Rodrigues and Umberto Lombardo and Jose Iriarte and Jonas Gregorio de Souza and Mark Robinson and Cyril Bernard and Marc Pouilly and M{\'e}lisse Dur{\'e}cu and Carl F. Huchzermeyer and Mashuta Kalebe and Alex Ovando and Doyle McKey}
}
@article {7034,
	title = {Use of an acoustic telemetry array for fine scale fish behaviour assessment of captive Paiche, <i>Arapaima gigas,</i>               breeders},
	journal = {Aquaculture Research},
	volume = {49},
	year = {2018},
	month = {Jan-06-2018},
	pages = {2296 - 2304},
	doi = {10.1111/are.2018.49.issue-610.1111/are.13692},
	url = {http://doi.wiley.com/10.1111/are.2018.49.issue-6},
	author = {Jesus Nu{\~n}ez-Rodriguez and Vela D{\'\i}az, Antonia and Bazan-Albitez, Roger and Rebaza Alfaro, Carmela and Koua, Daniel and N{\'u}{\~n}ez, Lucie and Testi, Baptiste and Renno, Jean-Francois and Duponchelle, Fabrice and Pella, Herv{\'e}}
}
@article {5628,
	title = {Use of an acoustic telemetry array for fine scale fish behaviour assessment of captive Paiche, Arapaima gigas, breeders},
	journal = {Aquaculture Research },
	volume = {49},
	year = {2018},
	pages = {2296-2304},
	abstract = {<p class="rtejustify">As\&nbsp;<em>Arapaima gigas</em>\&nbsp;is one of the most valuable species for the growing production of Amazonian aquaculture, knowledge of its reproductive behaviour and its application to increase reproduction success in captivity is of great importance as no hormonal spawning induction technique exists for this species. An acoustic positioning system (LOTEK Inc.) was used to observe the interactions of adult fish to better understand the formation of mating pairs. Fish were placed in a 4,500\&nbsp;m2\&nbsp;aquaculture pond over a 6-month period in the IIAP field station of Pucallpa, Per{\'u}. This paper describes the methodological protocols used to set up and test the hydrophone array and presents the methodology used for the analysis of the huge amount of collected data. This methodology is illustrated by the analysis of a 6-day period for a mating pair that showed a spawning event. The results indicated that male and female occupied mostly one preferential area in one pond edge where the nesting area is located. Different activity patterns were observed during the spawning event, with male and female being closer during the spawning day. The results also showed that male travelled less distance than female during the studied period. Finally these results demonstrated the suitability of such equipment to monitor fish interactions at fine spatial (sub meter) and temporal (5\&nbsp;s) scales in confined environments like aquaculture ponds.</p>
},
	doi = {doi.org/10.1111/are.13692},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/are.13692},
	author = {Jesus Nu{\~n}ez-Rodriguez and Vela Diaz, A. and Bazan-Albitez, R and Koua, D and Nu{\~n}ez L. and Testi, B. and Renno, Jean-Francois and Duponchelle, F and Pella, H}
}
@article {6686,
	title = {Without quality presence-absence data, discrimination metrics such as TSS can be misleading measures of model performance},
	journal = {Journal of Biogeography},
	volume = {45},
	year = {2018},
	month = {Jan-09-2018},
	pages = {1994 - 2002},
	doi = {10.1111/jbi.2018.45.issue-910.1111/jbi.13402},
	url = {http://doi.wiley.com/10.1111/jbi.2018.45.issue-9http://doi.wiley.com/10.1111/jbi.13402http://onlinelibrary.wiley.com/wol1/doi/10.1111/jbi.13402/fullpdfhttps://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1111\%2Fjbi.13402},
	author = {Leroy, Boris and Delsol, Robin and Hugueny, Bernard and Meynard, Christine N. and Barhoumi, Ch{\'e}{\"\i}ma and Barbet-Massin, Morgane and Bellard, C{\'e}line}
}
@article {5036,
	title = {Before-After analysis of the trophic network of an experimental dumping site in the eastern part of the Bay of Seine (English Channel)},
	journal = {Marine Pollution Bulletin},
	volume = {118},
	year = {2017},
	month = {05/2017},
	pages = {101-111},
	abstract = {<p class="rtejustify">An experimental study was conducted to assess the physical and biological impacts of muddy fine sand dredged material dumped on a medium sand site Machu offshore the Seine Estuary. Complementary trophic web modelling tools were applied to the Machu ecosystem to analyse the effects of dumping operations. Results show that, after the dumping operations, the biomass of fish increased while invertebrate biomass remained relatively stable through time. Nevertheless, the biomasses of benthic invertebrates, omnivores/scavengers and predators showed some increases, while non-selective deposit feeders and filter feeders decreased. At the ecosystem level, results show that the total ecosystem activity, the ascendency and the overall omnivorous character of the food-web structure increased after dumping operations, whereas recycling subsequently decreased. Finally, the fine and medium sand habitat offshore from the Seine estuary, which undergoes regular natural physical perturbations, shows a high resilience after a short dumping phase. (C) 2017 Elsevier Ltd. All rights reserved.</p>
},
	issn = {{0025-326X}},
	doi = {{10.1016/j.marpolbul.2017.02.042}},
	author = {Pezy, Jean-Philippe and Raoux, Aurore and Marmin, Stella and Balay, Pierre and Nathalie Niquil and Jean-Claude Dauvin}
}
@article {5037,
	title = {Benthic and fish aggregation inside an offshore wind farm: Which effects on the trophic web functioning?},
	journal = {Ecological indicators},
	volume = {72},
	year = {2017},
	month = {01/2017},
	pages = {33-46},
	abstract = {<p class="rtejustify">As part of the energy transition, the French government is planning the construction of three offshore wind farms in Normandy (Bay of Seine and eastern part of the English Channel, north-western France) in the next years. These offshore wind farms will be integrated into an ecosystem already facing multiple anthropogenic disturbances such as maritime transport, fisheries, oyster and mussel farming, and sediment dredging. Currently no integrated, ecosystem-based study on the effects of the construction and exploitation of offshore wind farms exists, where biological approaches generally focused on the conservation of some valuable species or groups of species. Complementary trophic web modelling tools were applied to the Bay of Seine ecosystem (to the 50 km(2) area covered by the wind farm) to analyse the potential impacts of benthos and fish aggregation caused by the introduction of additional hard substrates from the piles and the turbine scour protections. An Ecopath ecosystem model composed of 37 compartments, from phytoplankton to seabirds, was built to describe the situation {\textquoteleft}{\textquoteleft}before{{\textquoteright}{\textquoteright}} the construction of the wind farm. Then, an Ecosim projection over 30 years was performed after increasing the biomass of targeted benthic and fish compartments. Ecological Network Analysis (ENA) indices were calculated for the two periods, {\textquoteleft}{\textquoteleft}before{{\textquoteright}{\textquoteright}} and {\textquoteleft}{\textquoteleft}after{{\textquoteright}{\textquoteright}}, to compare network functioning and the overall structural properties of the food web. Our main results showed (1) that the total ecosystem activity, the overall system omnivory (proportion of generalist feeders), and the recycling increased after the construction of the wind farm; (2) that higher trophic levels such as piscivorous fish species, marine mammals, and seabirds responded positively to the aggregation of biomass on piles and turbine scour protections; and (3) a change in keystone groups after the construction towards more structuring and dominant compartments. Nonetheless, these changes could be considered as limited impacts of the wind farm installation on this coastal trophic web structure and functioning. (C) 2016 Elsevier Ltd. All rights reserved.</p>
},
	issn = {{1470-160X}},
	doi = {10.1016/j.ecolind.2016.07.037},
	author = {Raoux, Aurore and Samuele Tecchio and Pezy, Jean-Philippe and G{\'e}raldine Lassalle and Degraer, Steven and Wilhelmsson, Dan and Cachera, Marie and Ernande, Bruno and Le Guen, Camille and Haraldsson, Matilda and Karine Granger{\'e} and Le Loc{\textquoteright}h, Francois and Dauvin, Jean-Claude and Nathalie Niquil}
}
@article {5166,
	title = {Bioaccumulation, distribution and elimination of chlordecone in the giant freshwater prawn Macrobrachium rosenbergii: Field and laboratory studies},
	journal = {Chemosphere},
	volume = {185},
	year = {2017},
	pages = {888 - 898},
	abstract = {<p>Abstract Chlordecone is a persistent organochlorine pesticide that has been widely used in Guadeloupe (French West Indies) to control the banana weevil Cosmopolites sordidus from 1972 to 1993. A few years after its introduction, widespread contamination of soils, rivers, wild animals and aquatic organisms was reported. Although high chlordecone concentrations have been reported in several crustacean species, its uptake, internal distribution, and elimination in aquatic species have never been described. This study aimed at investigating the accumulation and tissue distribution of chlordecone in the giant freshwater prawn Macrobrachium rosenbergii, using both laboratory (30 days exposure) and field (8 months exposure) approaches. In addition, depuration in chlordecone-free water was studied. Results showed that chlordecone bioconcentration in prawns was dose-dependent and time-dependent. Moreover, females appeared to be less contaminated than males after 5 and 7 months of exposure, probably due to successive spawning leading in the elimination of chlordecone through the eggs. Chlordecone distribution in tissues of exposed prawns showed that cephalothorax organs, mainly represented by the hepatopancreas, was the most contaminated. Results also showed that chlordecone was accumulated in cuticle, up to levels of 40\% of the chlordecone body burden, which could be considered as a depuration mechanism since chlordecone is eliminated with the exuviae during successive moults. Finally, this study underlined the similarity of results obtained in laboratory and field approaches, which highlights their complementarities in the chlordecone behaviour understanding in M.\&nbsp;rosenbergii.</p>
},
	keywords = {Bioaccumulation factor},
	issn = {0045-6535},
	doi = {https://doi.org/10.1016/j.chemosphere.2017.07.099},
	url = {http://www.sciencedirect.com/science/article/pii/S0045653517311529},
	author = {Anne Lafontaine and Eric Gismondi and Nathalie Dodet and C{\'e}lia Joaquim-Justo and C{\'e}line Boulang{\'e}-Lecomte and Fanny Caupos and Lemoine, Soazig and Laurent Lagadic and Jo{\"e}lle Forget-Leray and Jean-Pierre Thom{\'e}}
}
@article {5222,
	title = {Conservation of Three-Dimensional Helix-Loop-Helix Structure through the Vertebrate Lineage Reopens the Cold Case of Gonadotropin-Releasing Hormone-Associated Peptide},
	journal = {Frontiers in Endocrinology},
	volume = {8},
	year = {2017},
	pages = {207},
	abstract = {<p class="rtejustify">GnRH associated peptide (GAP) is the C-terminal portion of the GnRH preprohormone. Although it was reported in mammals that GAP may act as a prolactin-inhibiting factor and can be co-secreted with GnRH into the hypophyseal portal blood, GAP has been practically out of the research circuit for about 20 years. Comparative studies highlighted the low conservation of GAP primary amino acid sequences among vertebrates, contributing to consider that this peptide only participates in the folding or carrying process of GnRH. Considering that the tridimensional (3D) structure of a protein may define its function, the aim of this study was to evaluate if GAP sequences and 3D structures are conserved in the vertebrate lineage. GAP sequences from various vertebrates were retrieved from databases. Analysis of primary amino acid sequence identity and similarity, molecular phylogeny, and prediction of 3D structures were performed. Amino acid sequence comparison and phylogeny analyses confirmed the large variation of GAP sequences throughout vertebrate radiation. In contrast, prediction of the 3D structure revealed a striking conservation of the 3D structure of GAP1 (GAP associated with the hypophysiotropic type 1 GnRH), despite low amino acid sequence conservation. This GAP1 peptide presented a typical helix-loop-helix (HLH) structure in all the vertebrate species analyzed. This HLH structure could also be predicted for GAP2 in some but not all vertebrate species, and in none of the GAP3 analyzed. These results allowed us to infer that selective pressures have maintained GAP1 HLH structure throughout the vertebrate lineage. The conservation of the HLH motif, known to confer biological activity to various proteins, suggests that GAP1 peptides may exert some hypophysiotropic biological functions across vertebrate radiation.</p>
},
	issn = {1664-2392},
	doi = {10.3389/fendo.2017.00207},
	url = {https://www.frontiersin.org/article/10.3389/fendo.2017.00207},
	author = {P{\'e}rez Sirkin, Daniela I. and Anne-Gaelle Lafont and Kamech, Nedia and Somoza, Gustavo M. and Vissio, Paula G. and Sylvie Dufour}
}
@article {8152,
	title = {Contamination and depuration of Paralytic Shellfish Poisoning by Acanthocardia tuberculata cockles and Callista chione clams in Moroccan waters},
	journal = {Journal of Materials and Environmental Sciences},
	volume = {8},
	year = {2017},
	pages = {4634-4641},
	abstract = {This study of\&nbsp;Gymnodinium catenatum\&nbsp;was conducted across two sampling stations; M{\textquoteright}diq bay and Oued Laou estuary during the period from July 2007 to May 2009.\&nbsp;Gymnodinium catenatum\&nbsp;blooms occurred after a rainfall event in autumn and early winter. Statically analyses showed a positive correlation with rainfall. During January 2008, the\&nbsp;G. catenatum\&nbsp;bloom resulted in contamination of tuberculate cockles and sweet clam by Paralytic Shellfish Poisoning (PSP) toxins. In the Oued Laou estuary, the levels of these toxins in shellfish went beyond the normative threshold for consumption of shellfish, (80\&nbsp;μg SXTeq. /100g of meat) and reached (710 {\textpm} 82.07) and (198 {\textpm} 6.56)\&nbsp;μg SXTeq. /100g of meat in cockles and sweet clam respectively. In M{\textquoteright}diq bay, concentrations of PSP toxins in the meat of these two shellfish were lower (256.57 {\textpm} 12.22\&nbsp;μg SXTeq. /100g and 80.66 {\textpm} 8.14\&nbsp;μg SXTeq. /100g of meat in tuberculate cockles and sweet clam respectively. An experimental test of depuration of tuberculate cockles and sweet clam contaminated by the PSP toxins was conducted in laboratory conditions in the first week of January 2008. The results showed partial and progressive elimination of PSP toxins in two shellfish species over time. In the tuberculate cockle, the elimination of PSP appears to be slower compared with the sweet clam; it took 120 days to reach levels of 80\&nbsp;μg SXTeq. /100g of meat, on the other hand only 3 days were needed to reach this safe concentration in the sweet clam.},
	author = {B. Rijal Leblad and H. Nhhala and M. Daoudi and M. Marhraoui and M. K. Ouelad Abdellah and Beno{\^\i}t V{\'e}ron and H. Er-Raioui}
}
@article {5005,
	title = {Description of a new maternal larvophilic mouth-brooding cichlid species, Apistogramma megastoma sp. n. (Teleostei: Perciformes: Geophaginae), from Loreto, Peru},
	journal = {Vertebrate Zoology },
	volume = {67},
	year = {2017},
	author = {R{\"o}mer, CI and Estivals, G and Vela Diaz, A and Fabrice Duponchelle and Garcia Davila, C and Hahn, I and Renno, J-F},
	editor = {R{\"o}mer, U}
}
@article {5033,
	title = {Description of a new maternal larvophilic mouth-brooding cichlid species, Apistogramma megastoma sp. n. (Teleostei: Perciformes: Geophaginae), from Loreto, Peru},
	journal = {Vertebrate Zoology },
	volume = {67},
	year = {2017},
	author = {R{\"o}mer, Uwe and R{\"o}mer, CI and Estivals, G and Vela Diaz, A. and Fabrice Duponchelle and Garcia Davila, C and Hahn, I and Renno, Jean-Francois}
}
@article {4801,
	title = {Dietary plasticity in the bivalve Astarte moerchi revealed by a multimarker study in two Arctic fjords},
	journal = {Marine Ecology Progress Series},
	volume = {567},
	year = {2017},
	pages = {157-172},
	abstract = {<p>ABSTRACT: Arctic coastal ecosystems are likely to be strongly affected by predicted environmental changes such as sea-ice decline and increase in freshwater input and turbidity. These changes are expected to impact primary production dynamics and consequently benthic consumers. The trophic relationship between primary producers and benthic primary consumers were compared in 2 Arctic fjords with different seasonal ice-cover: Young Sound (NE Greenland, a high-Arctic fjord) and Kongsfjorden (Svalbard Archipelago, a sub-Arctic fjord). For comparison, we selected the filter-feeding bivalve <em>Astarte moerchi</em> (belonging to the complex <em>A. borealis</em>), which has a broad geographical distribution in the Arctic. The bivalve digestive glands and food sources were characterized with fatty acids (FAs), bulk stable isotopes, and compound-specific stable isotopes of individual FAs. Our results suggest that diatoms of pelagic and/or benthic origin are the main contributors to the <em>A. moerchi</em> diet in Young Sound and make up a less important fraction of the diet in the Kongsfjorden population. A contribution by sympagic diatoms is clearly excluded in the sub-Arctic fjord and needs to be further assessed in the Arctic fjord. The <em>A. moerchi</em> diet in sub-Arctic Kongsfjorden is more diversified, varies with season, and has contributions from dinoflagellates and macroalgal detritus. These results, together with higher concentrations of total FAs in the Young Sound population, demonstrated and characterized the trophic plasticity of this bivalve species. Based on these results, we discuss potential effects of environmental factors (shifts in trophic resources, increase in turbidity) for <em>A. moerchi</em> populations in changing Arctic ecosystems.</p>
},
	author = {De Cesare, S and Tarik Meziane and Laurent Chauvaud and Richard, J and Sejr, M K and Th{\'e}bault, J and Winkler, G and Fr{\'e}d{\'e}ric Olivier}
}
@article {5906,
	title = {Distribution and abundance of skates ({Bathyraja} spp.) on the {Kerguelen} {Plateau} through the lens of the toothfish fisheries},
	journal = {Fisheries Research},
	volume = {186},
	year = {2017},
	pages = {65{\textendash}81},
	abstract = {<p>Three species of skate, Bathyraja eatonii, B. irrasa and B. murrayi, are commonly taken as incidental by-catch in Patagonian toothfish (Dissostichus eleginoides) longline and trawl fisheries, and the mackerelicefish (Champsocephalus gunnari) trawl fishery on the Kerguelen Plateau (KP) in the southern IndianOcean. Data from fishery observations for 1997{\textendash}2014 shows that the three skates were widely distributedacross the Kerguelen Plateau, showing different spatial distributions, linked mainly with depth. Off HeardIsland and McDonald Islands (HIMI), in the southern part of the KP, B. eatonii and B. irrasa were mostabundant to the north and northwest of Heard Island, out to the edge of the Australian Exclusive EconomicZone (EEZ), and were caught down to depths of 1790 m and 2059 m respectively. The smallest species, B.murrayi, occurred mainly in the shallower waters down to 550 m, and was most abundant to the northand northeast, close to Heard Island. Around Kerguelen Islands, in the northern part of the KP, skateswere most abundant between the 500 m and 1000 m contours circling and extending from the islands.Catch rates were modelled using zero-inflated GAMs and GLMs. The catch rates of skates from thetrawl fisheries in the Australian EEZ surrounding Heard Island and McDonald Islands have shown littleevidence of depletion on the main trawl fishing grounds, although there is evidence of a decrease inthe average total length of B. eatonii. The marine reserves and the conservation measures employed bythe Commission for the Conservation of Antarctic Marine Living Resources in the HIMI fisheries, appearto provide effective protection for the skates, at least in the shallower waters where the trawl fisheriesoperate. B. irrasa taken in the deeper waters where longline fishing occurs have shown a slight declinein catch rate over the years of the HIMI fishery. Although all skates are returned to the water from thisfishery, survival rates are unknown and careful monitoring should continue to assess the status of thesestocks. There appears to be little change in the abundance of the skate species at Kerguelen in the timeperiod.This study provides the first review of skate by-catch across both the HIMI and Kerguelen fisheries.Ongoing monitoring of species specific by-catch levels and further research to determine the importantlife history parameters of these species are required, particularly for B. irrasa which is taken in both trawland longline fisheries.</p>
},
	issn = {01657836},
	doi = {10.1016/j.fishres.2016.07.022},
	url = {http://linkinghub.elsevier.com/retrieve/pii/S016578361630234X},
	author = {Nowara, G.B. and Burch, P. and Nicolas Gasco and Welsford, D.C. and Lamb, T.D. and Charlotte Chazeau and Guy Duhamel and Patrice Pruvost and Wotherspoon, S. and Candy, S.G.}
}
@article {4796,
	title = {DNA Metabarcoding of Amazonian Ichthyoplankton Swarms},
	journal = {PLoSOne},
	volume = {Jan 17;12},
	year = {2017},
	month = {01/2017},
	pages = {:e0170009},
	abstract = {<p>Tropical rainforests harbor extraordinary biodiversity. The Amazon basin is thought to hold 30\% of all river fish species in the world. Information about the ecology, reproduction, and recruitment of most species is still lacking, thus hampering fisheries management and successful conservation strategies. One of the key understudied issues in the study of population dynamics is recruitment. Fish larval ecology in tropical biomes is still in its infancy owing to identification difficulties. Molecular techniques are very promising tools for the identification of larvae at the species level. However, one of their limits is obtaining individual sequences with large samples of larvae. To facilitate this task, we developed a new method based on the massive parallel sequencing capability of next generation sequencing (NGS) coupled with hybridization capture. We focused on the mitochondrial marker cytochrome oxidase I (COI). The results obtained using the new method were compared with individual larval sequencing. We validated the ability of the method to identify Amazonian catfish larvae at the species level and to estimate the relative abundance of species in batches of larvae. Finally, we applied the method and provided evidence for strong temporal variation in reproductive activity of catfish species in the Ucayal{\'\i} River in the Peruvian Amazon. This new time and cost effective method enables the acquisition of large datasets, paving the way for a finer understanding of reproductive dynamics and recruitment patterns of tropical fish species, with major implications for fisheries management and conservation.</p>
},
	author = {Maggia, M. E. and Vigouroux, Y. and Renno, Jean-Francois and Fabrice Duponchelle and Desmarais, E and Jesus Nu{\~n}ez-Rodriguez and Garc{\'\i}a-D{\'a}vila, C and Carvajal-Vallejos, F M and Paradis, Emmanuel and Martin, Jean-Fran{\c c}ois and Mariac, C{\'e}dric}
}
@article {6667,
	title = {Dynamics of particulate organic matter composition in coastal systems: A spatio-temporal study at multi-systems scale},
	journal = {Progress in Oceanography},
	volume = {156},
	year = {2017},
	pages = {221-239},
	abstract = {In coastal systems, the multiplicity of sources fueling the pool of particulate organic matter (POM) leads to divergent estimations of POM composition. Eleven systems (two littoral systems, eight embayments and semi-enclosed systems and one estuary) distributed along the three maritime fa{\c c}ades of France were studied for two to eight years in order to quantify the relative contribution of organic matter sources to the surface-water POM pool in coastal systems. This study was based on carbon and nitrogen elemental and isotopic ratios, used for running mixing models. The POM of the estuary is dominated by terrestrial material (93\% on average), whereas the POM of the other systems is dominated by phytoplankton (84\% on average). Nevertheless, for the latter systems, the POM composition varies in space, with (1) systems where POM is highly composed of phytoplankton (>=93\%), (2) systems characterized by a non-negligible contribution of benthic (8{\textendash}19\%) and/or river (7{\textendash}19\%) POM sources, and (3) the Mediterranean systems characterized by the contribution of diazotroph organisms (ca. 14\%). A continent-to-ocean gradient of river and/or benthic POM contribution is observed. Finally, time series reveal (1) seasonal variations of POM composition, (2) differences in seasonality between systems, and (3) an inshore-offshore gradient of seasonality within each system that were sampled at several stations. Spatial and seasonal patterns of POM composition are mainly due to local to regional processes such as hydrodynamics and sedimentary hydrodynamic (e.g. resuspension processes, changes in river flows, wind patterns influencing along-shore currents) but also due to the geomorphology of the systems (depth of the water column, distance to the shore). Future studies investigating the link between these forcings and POM composition would help to better understand the dynamics of POM composition in coastal systems. {\textcopyright} 2017 Elsevier Ltd},
	keywords = {bacterium, benthos, biogeochemistry, Biological materials, C and n stable isotopes, C:N ratio, Carbon, carbon isotope, Coastal systems, coastal zone, Fluid dynamics, France, geomorphology, Hydrodynamics, Isotopes, isotopic ratio, Mediterranean sea, Meta analysis, meta-analysis, Mixing, Mixing models, nitrogen isotope, Organic compounds, particulate organic matter, Particulate organic matters, Phytoplankton, prokaryote, Rivers, seasonality, spatiotemporal analysis, stable isotope, Surface water, Surface waters, terrestrial deposit, Time series},
	issn = {00796611},
	doi = {10.1016/j.pocean.2017.03.001},
	url = {https://www.sciencedirect.com/science/article/abs/pii/S0079661116301914},
	author = {Li{\'e}nart, Camilla and Savoye, Nicolas and Bozec, Yann and Elsa Breton and Conan, Pascal and David, Val{\'e}rie and Eric Feunteun and Karine Granger{\'e} and Kerherv{\'e}, P. and Lebreton, B. and S{\'e}bastien Lefebvre and St{\'e}phane L{\textquoteright}Helguen and Mousseau, Laure and Raimbault, P and Richard, P. and Riera, P. and Sauriau, P.-G. and Gauthier Schaal and Aubert, F. and Aubin, S. and Bichon, S. and Boinet, C. and Bourasseau, L. and Br{\'e}ret, M. and Caparros, J. and Cariou, T. and Charlier, K. and Claquin, P. and Vincent Cornille and Corre, A.-M. and Costes, L. and Crispi, O. and Muriel Crouvoisier and Czamanski, M. and Del Amo, Y. and Derriennic, H. and Dindinaud, F. and Durozier, M. and Hanquiez, V. and Antoine Nowaczyk and Devesa, J. and Ferreira, S. and Fornier, M. and Garcia, F. and Garcia, N. and Geslin, S. and Emilie Grossteffan and Gueux, A. and Guillaudeau, J. and Guillou, G. and Joly, O. and Lachauss{\'e}e, N. and Lafont, M. and Lamoureux, J. and Lecuyer, E. and Lehodey, J.-P. and Lemeille, D. and Leroux, C. and Mac{\'e}, E. and Maria, E. and Pineau, P. and Petit, F. and Pujo-Pay, M. and Rimelin-Maury, P. and Sultan, E.}
}
@article {4755,
	title = {The expression of nuclear and membrane estradiol receptors in the European eel throughout spermatogenesis.},
	journal = {Comparative Biochemistry and Physiology, Part A},
	volume = {203},
	year = {2017},
	pages = {91-99},
	author = {Morini, Marina and Penaranda, David S and V{\'\i}lchez, M C and Tveiten, Helge and Anne-Gaelle Lafont and Sylvie Dufour and P{\'e}rez, L and Asturiano, J F}
}
@article {5019,
	title = {Genetic and morphological evidence for cryptic species in Macrobrachium australe and resurrection of M. ustulatum (Crustacea, Palaemonidae)},
	journal = {European Journal of Taxonomy},
	volume = {289},
	year = {2017},
	month = {03/2017},
	pages = {1{\textendash}27},
	abstract = {<p>\&nbsp;</p>

<p>\&nbsp;Macrobrachium australe is an amphidromous prawn living in the insular freshwater systems of the Indo-Pacific. Because it possesses few informative morphological characters, that often vary from one habitat to another, M. australe has produced much taxonomic confusion and has historically been described under eight synonyms. Here, 53 specimens collected throughout the Indo-Pacific under the name M. australe were phylogenetically and morphologically examined. Results revealed that what has been called M. australe belongs to at least two distinct species: M. australe, distributed from the Southwest Indian Ocean to the Central Pacific Ocean, and a cryptic species potentially restricted to the Northwest Pacific Ocean, here identified as M. ustulatum, which until now was considered as a junior synonym. Although they are not quite found in the same habitat (lentic-lotic), the presence of these distinct, and reciprocally monophyletic entities in the same rivers on the islands of Palau and Santo strongly favors the hypothesis of two reproductively isolated entities. Six morphological characters, including the proportions of the joints of the male second pereiopod, the shape of the epistome lobe and the armature of the fourth thoracic sternite, are evidenced as diagnostic. A neotype of M. australe is designated and deposited in the Mus{\'e}um national d{\textquoteright}Histoire naturelle in Paris.</p>
},
	keywords = {Amphidromous prawn, Indo-West Pacific, morphology, multi-locus phylogeny},
	author = {Castelin, Magalie and de Mazancourt, Valentin and Marquet, G{\'e}rard and Zimmermann, Gabrielle and Philippe Keith}
}
@article {5908,
	title = {Geography and life history traits account for the accumulation of cryptic diversity among {Indo}-{West} {Pacific} coral reef fishes},
	journal = {Marine Ecology Progress Series},
	volume = {583},
	year = {2017},
	pages = {179{\textendash}193},
	author = {Hubert, Nicolas and Dettai, Agn{\`e}s and Patrice Pruvost and Cruaud, Corinne and Kulbicki, Michel and Myers, Robert F. and Borsa, Philippe}
}
@article {8573,
	title = {The Gulf Stream frontal system: A key oceanographic feature in the habitat selection of the leatherback turtle?},
	journal = {Deep Sea Research Part I: Oceanographic Research Papers},
	volume = {123},
	year = {2017},
	month = {Jan-05-2017},
	pages = {35 - 47},
	issn = {09670637},
	doi = {10.1016/j.dsr.2017.03.003},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0967063716303016},
	author = {Chambault, Philippine and Roquet, Fabien and Benhamou, Simon and Baudena, Alberto and Pauthenet, Etienne and de Thoisy, Beno{\^\i}t and Bonola, Marc and Dos Reis, Virginie and Crasson, Rodrigue and Brucker, Mathieu and Le Maho, Yvon and Chevallier, Damien}
}
@article {8575,
	title = {Habitat use and diving behaviour of gravid olive ridley sea turtles under riverine conditions in French Guiana},
	journal = {Journal of Marine Systems},
	volume = {165},
	year = {2017},
	month = {Jan-01-2017},
	pages = {115 - 123},
	issn = {09247963},
	doi = {10.1016/j.jmarsys.2016.10.005},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0924796316301889},
	author = {Chambault, Philippine and Giraudou, Lucie and de Thoisy, Beno{\^\i}t and Bonola, Marc and Kelle, Laurent and Reis, Virginie Dos and Blanchard, Fabian and Le Maho, Yvon and Chevallier, Damien}
}
@article {6820,
	title = {Identifying Toxic Impacts of Metals Potentially Released during Deep-Sea Mining{\textemdash}A Synthesis of the Challenges to Quantifying Risk},
	journal = {Frontiers in Marine Science},
	volume = {4},
	year = {2017},
	pages = {368},
	abstract = {In January 2017, the International Seabed Authority released a discussion paper on the development of Environmental Regulations for deep-sea mining (DSM) within the Area Beyond National Jurisdiction (the {\textquotedblleft}Area{\textquotedblright}). With the release of this paper, the prospect for commercial mining in the Area within the next decade has become very real. Moreover, within nations{\textquoteright} Exclusive Economic Zones, the exploitation of deep-sea mineral ore resources could take place on very much shorter time scales and, indeed, may have already started. However, potentially toxic metal mixtures may be released at sea during different stages of the mining process and in different physical phases (dissolved or particulate). As toxicants, metals can disrupt organism physiology and performance, and therefore may impact whole populations, leading to ecosystem scale effects. A challenge to the prediction of toxicity is that deep-sea ore deposits include complex mixtures of minerals, including potentially toxic metals such as copper, cadmium, zinc, and lead, as well as rare earth elements. Whereas the individual toxicity of some of these dissolved metals has been established in laboratory studies, the complex and variable mineral composition of seabed resources makes the a priori prediction of the toxic risk of DSM extremely challenging. Furthermore, although extensive data quantify the toxicity of metals in solution in shallow-water organisms, these may not be representative of the toxicity in deep-sea organisms, which may differ biochemically and physiologically and which will experience those toxicants under conditions of low temperature, high hydrostatic pressure, and potentially altered pH. In this synthesis, we present a summation of recent advances in our understanding of the potential toxic impacts of metal exposure to deep-sea meio- to megafauna at low temperature and high pressure, and consider the limitation of deriving lethal limits based on the paradigm of exposure to single metals in solution. We consider the potential for long-term and far-field impacts to key benthic invertebrates, including the very real prospect of sub-lethal impacts and behavioral perturbation of exposed species. In conclusion, we advocate the adoption of an existing practical framework for characterizing bulk resource toxicity in advance of exploitation.},
	issn = {2296-7745},
	doi = {10.3389/fmars.2017.00368},
	url = {https://www.frontiersin.org/article/10.3389/fmars.2017.00368},
	author = {Hauton, Chris and Brown, Alastair and Thatje, Sven and Mestre, N{\'e}lia C. and Bebianno, Maria J. and Martins, In{\^e}s and Bettencourt, Raul and Canals, Miquel and Sanchez-Vidal, Anna and Bruce Shillito and Juliette Ravaux and Magali Zbinden and Duperron, S{\'e}bastien and Mevenkamp, Lisa and Vanreusel, Ann and Gambi, Cristina and Dell{\textquoteright}Anno, Antonio and Danovaro, Roberto and Gunn, Vikki and Weaver, Phil}
}
@article {5365,
	title = {Le cas des r{\'e}cifs d{\textquoteright}hermelles Nuisible ou patrimonial : l{\textquoteright}{\'e}volution des perceptions en milieu marin},
	journal = {Le Courrier de la Nature},
	volume = {306},
	year = {2017},
	pages = {46-49},
	issn = {0011-047},
	author = {Patrick Le Mao and Nicolas Desroy and J{\'e}r{\^o}me Fournier and Laurent Godet and Eric Thi{\'e}baut}
}
@article {8571,
	title = {Marine Mammals Exploring the Oceans Pole to Pole: A Review of the MEOP Consortium},
	journal = {Oceanography},
	volume = {30},
	year = {2017},
	month = {Jan-06-2017},
	pages = {132 - 138},
	issn = {10428275},
	doi = {10.5670/oceanog10.5670/oceanog.2017.234},
	url = {https://tos.org/oceanography/},
	author = {Treasure, Anne and Roquet, Fabien and Ansorge, Isabelle and Bester, Marth{\'a}n and Boehme, Lars and Bornemann, Horst and Charrassin, Jean-Beno{\^\i}t and Chevallier, Damien and Costa, Daniel and Fedak, Mike and Guinet, Christophe and Hammill, Mike and Harcourt, Robert and Hindell, Mark and Kovacs, Kit and Lea, Mary-Anne and Lovell, Phil and Lowther, Andrew and Lydersen, Christian and McIntyre, Trevor and McMahon, Clive and Muelbert, M{\^o}nica and Nicholls, Keith and Picard, Baptiste and Reverdin, Gilles and Trites, Andrew and Williams, Guy and de Bruyn, P.J. Nico}
}
@article {5231,
	title = {Mercury contamination level and speciation inventory in Lakes Titicaca and Uru-Uru (Bolivia): Current status and future trends},
	journal = {Environmental Pollution},
	volume = {231, Part 1},
	year = {2017},
	pages = {262 - 270},
	abstract = {<p>Aquatic ecosystems of the Bolivian Altiplano (\~{}3800 m a.s.l.) are characterized by extreme hydro-climatic constrains (e.g., high UV-radiations and low oxygen) and are under the pressure of increasing anthropogenic activities, unregulated mining, agricultural and urban development. We report here a complete inventory of mercury (Hg) levels and speciation in the water column, atmosphere, sediment and key sentinel organisms (i.e., plankton, fish and birds) of two endorheic Lakes of the same watershed differing with respect to their size, eutrophication and contamination levels. Total Hg (THg) and monomethylmercury (MMHg) concentrations in filtered water and sediment of Lake Titicaca are in the lowest range of reported levels in other large lakes worldwide. Downstream, Hg levels are 3-10 times higher in the shallow eutrophic Lake Uru-Uru than in Lake Titicaca due to high Hg inputs from the surrounding mining region. High percentages of MMHg were found in the filtered and unfiltered water rising up from \&lt;1 to \~{}50\% THg from the oligo/hetero-trophic Lake Titicaca to the eutrophic Lake Uru-Uru. Such high \%MMHg is explained by a high in situ MMHg production in relation to the sulfate rich substrate, the low oxygen levels of the water column, and the stabilization of MMHg due to abundant ligands present in these alkaline waters. Differences in MMHg concentrations in water and sediments compartments between Lake Titicaca and Uru-Uru were found to mirror the offset in MMHg levels that also exist in their respective food webs. This suggests that in situ MMHg baseline production is likely the main factor controlling MMHg levels in fish species consumed by the local population. Finally, the increase of anthropogenic pressure in Lake Titicaca may probably enhance eutrophication processes which favor MMHg production and thus accumulation in water and biota.</p>
},
	keywords = {Titicaca},
	issn = {0269-7491},
	doi = {https://doi.org/10.1016/j.envpol.2017.08.009},
	url = {https://www.sciencedirect.com/science/article/pii/S0269749117320572},
	author = {S. Gu{\'e}dron and D. Point and D. Acha and S. Bouchet and P.A. Baya and E. Tessier and M. Monperrus and C.I. Molina and A. Groleau and Laurent Chauvaud and J. Thebault and E. Amice and L. Alanoca and C. Duwig and G. Uzu and Lazzaro, Xavier and A. Bertrand and S. Bertrand and C. Barbraud and K. Delord and Gibon, Francois-Marie and C. Ibanez and M. Flores and P. Fernandez Saavedra and M.E. Ezpinoza and C. Heredia and F. Rocha and C. Zepita and D. Amouroux}
}
@article {8583,
	title = {Mixed-stock analysis in green turtles Chelonia mydas: mtDNA decipher current connections among west Atlantic populations},
	journal = {Mitochondrial DNA Part A},
	volume = {28},
	year = {2017},
	month = {Apr-03-2017},
	pages = {197 - 207},
	issn = {2470-1394},
	doi = {10.3109/19401736.2015.1115843},
	url = {https://www.tandfonline.com/doi/full/10.3109/19401736.2015.1115843},
	author = {Costa Jordao, Juliana and Bondioli, Ana Cristina Vigliar and Almeida-Toledo, Lurdes Foresti de and Bilo, Karin and Berzins, Rachel and Le Maho, Yvon and Chevallier, Damien and de Thoisy, Beno{\^\i}t}
}
@article {4626,
	title = {Molecular characterization of an adipokinetic hormone-related neuropeptide (AKH) from a mollusk},
	journal = {General and Comparative Endocrinology},
	volume = {243},
	year = {2017},
	pages = {15-21},
	author = {Marie-Pierre Dubos and Bernay, Beno{\^\i}t and Pascal Favrel}
}
@article {5560,
	title = {Morphodynamics of an eroding beach and foredune in the Mekong River delta: Implications for deltaic shoreline change},
	journal = {Continental Shelf Research},
	volume = {147},
	year = {2017},
	pages = {155 - 164},
	abstract = {<p>River delta shorelines composed of sand may be characterized by complex spatial and temporal patterns of erosion and accretion even when sand supply is readily available. This is especially the case for deltas with multiple mouths subject to significant wave and tide influence. High-resolution topographical and wave and current measurements were conducted from 2010 to 2012 at Ba D{\^o}ng beach, a popular resort located on the largest of the multiple inter-distributary plains of the Mekong River delta. Ba D{\^o}ng beach is a mesotidal, multiple bar-trough system. The upper beach corresponds to the current active beach ridge in the sequence of ridges that have marked the progradation of the inter-distributary delta plains, and is capped by a low foredune that protects villages and agricultural land from marine flooding. During the low river-flow season, the beach is characterized by Northeast monsoon waves and strong longshore currents that transport sediment towards the southwest. Weaker longshore currents towards the northeast are generated by Southwest monsoon waves during the high river-flow season. Ba D{\^o}ng beach underwent strong erosion between 2010 and 2012, following a phase of massive accretion. In 2012, this erosion resulted in breaching of the foredune, contributing to concerns that the Mekong delta had become vulnerable to retreat. The local erosion at Ba D{\^o}ng needs to be considered, however, in the broader context of delta shoreline morphodynamics, which involves space- and time-varying patterns of beach accretion and erosion. These patterns are the present expressions of plan-view beach-ridge morphology in the delta, which is characterized by flaring and truncations that reflect changing beach morphodynamics in the course of deltaic progradation. We surmise that these patterns are related to complex interactions involving river water and sediment discharge, waves and wave-generated longshore currents, tidal currents, and shoreline orientation.</p>
},
	keywords = {Asian monsoon waves, Beach morphodynamics, Beach ridges, Delta erosion and accretion, Mekong delta},
	issn = {0278-4343},
	doi = {https://doi.org/10.1016/j.csr.2017.06.018},
	url = {http://www.sciencedirect.com/science/article/pii/S0278434316305271},
	author = {E.J. Anthony and P. Dussouillez and Franck Dolique and M. Besset and G. Brunier and V.L. Nguyen and M. Goichot}
}
@article {4756,
	title = {Nuclear and membrane progestin receptors in the European eel: characterization and expression in vivo through spermatogenesis},
	journal = {Comparative Biochemistry and Physiology, Part A},
	volume = {207},
	year = {2017},
	pages = {79-92},
	author = {Morini, Marina and Penaranda, David S and V{\'\i}lchez, M C and Nourizadeh-Lillabadi, R and Anne-Gaelle Lafont and Sylvie Dufour and Asturiano, J F and Weltzien, Finn-Arne and Perez, Luz}
}
@article {Thorel2017192,
	title = {Nutrient ratios influence variability in Pseudo-nitzschia species diversity and particulate domoic acid production in the Bay of Seine (France)},
	journal = {Harmful Algae},
	volume = {68},
	year = {2017},
	note = {cited By 15},
	pages = {192-205},
	publisher = {Elsevier B.V.},
	abstract = {The population dynamics of different Pseudo-nitzschia species, along with particulate domoic acid (pDA) concentrations, were studied from May 2012 to December 2013 in the Bay of Seine (English Channel, Normandy). While Pseudo-nitzschia spp. blooms occurred during the two years of study, Pseudo-nitzschia species diversity and particulate domoic acid concentrations varied greatly. In 2012, three different species were identified during the spring bloom (P. australis, P. pungens and P. fraudulenta) with high pDA concentrations (\~{}1400 ng l-1) resulting in shellfish harvesting closures. In contrast, the 2013 spring was characterised by a P. delicatissima bloom without any toxic event. Above all, the results show that high pDA concentrations coincided with the presence of P. australis and with potential silicate limitation (Si:N \&lt; 1), while nitrate concentrations were still replete. The contrasting environmental conditions between 2012 and 2013 highlight different environmental controls that might favour the development of either P. delicatissima or P. australis. This study points to the key role of Pseudo-nitzschia diversity and cellular toxicity in the control of particulate domoic acid variations and highlights the fact that diversity and toxicity are influenced by nutrients, especially nutrient ratios. {\textcopyright} 2017 Elsevier B.V.},
	keywords = {analogs and derivatives, analysis, Bay, Bays, Biodiversity, chemistry, Diatom, Diatoms, Domoic acid, France, Geography, kainic acid, Nitrates, nitric acid derivative, particulate matter, phosphate, Phosphates, Physiology, Phytoplankton, Principal Component Analysis, season, Seasons, species difference, Species Specificity, time factor, Time Factors},
	issn = {15689883},
	doi = {10.1016/j.hal.2017.07.005},
	url = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-85028543709\&doi=10.1016\%2fj.hal.2017.07.005\&partnerID=40\&md5=def23b37b0d16a1ae7ab65a7ef2b940b},
	author = {Thorel, Maxine and Pascal Claquin and Mathilde Schapira and Romain Le Gendre and Riou, Philippe and Didier Goux and Bertrand Le Roy and Raimbault, V and Deton-Cabanillas, A.-F. and Bazin, Pauline and Kientz-Bouchart, Val{\'e}rie and Juliette Fauchot}
}
@article {5143,
	title = {Nutrient ratios influence variability in Pseudo-nitzschia species diversity and particulate domoic acid production in the Bay of Seine (France)},
	journal = {Harmful Algae},
	volume = {68},
	year = {2017},
	pages = {192 - 205},
	abstract = {<p>The population dynamics of different Pseudo-nitzschia species, along with particulate domoic acid (pDA) concentrations, were studied from May 2012 to December 2013 in the Bay of Seine (English Channel, Normandy). While Pseudo-nitzschia spp. blooms occurred during the two years of study, Pseudo-nitzschia species diversity and particulate domoic acid concentrations varied greatly. In 2012, three different species were identified during the spring bloom (P. australis, P. pungens and P. fraudulenta) with high pDA concentrations (\~{}1400\&nbsp;ng\&nbsp;l-1) resulting in shellfish harvesting closures. In contrast, the 2013 spring was characterised by a P. delicatissima bloom without any toxic event. Above all, the results show that high pDA concentrations coincided with the presence of P. australis and with potential silicate limitation (Si:N\&nbsp;\&lt;\&nbsp;1), while nitrate concentrations were still replete. The contrasting environmental conditions between 2012 and 2013 highlight different environmental controls that might favour the development of either P. delicatissima or P. australis. This study points to the key role of Pseudo-nitzschia diversity and cellular toxicity in the control of particulate domoic acid variations and highlights the fact that diversity and toxicity are influenced by nutrients, especially nutrient ratios.</p>
},
	keywords = {Bloom dynamics, Domoic acid, English Channel, Nutrient ratios, Pseudo-nitzschia Species diversity},
	issn = {1568-9883},
	doi = {https://doi.org/10.1016/j.hal.2017.07.005},
	url = {http://www.sciencedirect.com/science/article/pii/S1568988317300148},
	author = {Thorel, Maxine and Pascal Claquin and Mathilde Schapira and Romain Le Gendre and Riou, Philippe and Goux, Didier and Le Roy, Bertrand and Raimbault, V and Deton-Cabanillas, Anne-Flore and Bazin, Pauline and Kientz-Bouchart, Val{\'e}rie and Juliette Fauchot}
}
@article {6928,
	title = {The nutritional quality of non-calcified macroalgae in Guadeloupe (Lesser Antilles) evaluated by their biochemical composition},
	journal = {Gulf and Caribbean Research},
	volume = {28},
	year = {2017},
	pages = {1-6},
	author = {Charlotte R. Dromard and Bouchon, Yolande and Harmelin-Vivien, Mireille and Bouchon, Claude}
}
@article {4341,
	title = {Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms},
	journal = {Environmental Microbiology},
	volume = {19},
	year = {2017},
	month = {5},
	pages = {909-925},
	abstract = {<p>Salinity regimes in estuaries and coastal areas vary with river discharge patterns, seawater evaporation, the morphology of the coastal waterways, and the dynamics of marine water mixing. Therefore, microalgae have to respond to salinity variations at time scales ranging from daily to annual cycles. Microalgae may also have to adapt to physical alterations that induce the loss of connectivity between habitats and the enclosure of bodies of water. Here, we integrated physiological assays and measurements of morphological plasticity with a functional genomics approach to examine the regulatory changes that occur during the acclimation to salinity in the estuarine diatom Thalassiosira weissflogii. We found that cells exposed to different salinity regimes for a short or long period presented adjustments in their carbon fractions, silicon pools, pigment concentrations and/or photosynthetic parameters. Salinity-induced alterations in frustule symmetry were observed only in the long-term cultures. Whole transcriptome analyses revealed a down-regulation of nuclear and plastid encoded genes during the long-term response and identified only a few regulated genes that were in common between the short- and long-term responses. We propose that in diatoms, one strategy for acclimating to salinity gradients and maintaining optimal cellular fitness could be a reduction in the cost of transcription. This article is protected by copyright. All rights reserved.</p>
},
	issn = {1462-2920},
	doi = {10.1111/1462-2920.13398},
	url = {http://dx.doi.org/10.1111/1462-2920.13398},
	author = {Adrien Bussard and Corre, Erwan and C{\'e}dric Hubas and Duvernois-Berthet, Evelyne and Gildas Le Corguille and Jourdren, Laurent and Coulpier, Fanny and Pascal Claquin and Pascal Jean Lopez}
}
@article {5023,
	title = {The {\textquotedblleft}Pinocchio-shrimp effect{\textquotedblright}: first evidence of variation in rostrum length with the environment in Caridina H. Milne-Edwards, 1837 (Decapoda: Caridea: Atyidae)},
	journal = {Journal of Crustacean Biology},
	volume = {37},
	year = {2017},
	month = {05/2017},
	pages = {243-248},
	abstract = {<p>External morphology has always been the first criterion used to separate species of shrimps,</p>

<p>especially in the freshwater genus Caridina H. Milne-Edwards, 1837, but more doubts have been</p>

<p>expressed regarding the relevance of some of the morphological characters. We collected 27</p>

<p>specimens of Caridina from seven different localities during field work conducted on the island</p>

<p>of Pohnpei (Federated States of Micronesia). After genetic verification that they all belonged to</p>

<p>the same species, 19 morphological variables were measured and correlated with the elevation</p>

<p>of the collecting stations using correlation analyses. We provide evidence that the length of the</p>

<p>rostrum showed strong negative correlation with the elevation. This could be explained either</p>

<p>by the physical stress exerted on the rostrum by the stronger water currents in the stations at a</p>

<p>higher elevation, as a defence against predators in the lower stations, or a combination of both</p>

<p>possibilities. The taxonomy of these shrimps is thus challenging and should not rely only on</p>

<p>rostrum length, but on other characters such as the number of teeth on the dorsal margin of</p>

<p>the carapace, which is not correlated with rostrum length and therefore, with the environment.</p>
},
	keywords = {correlation analysis, effect of elevation, freshwater shrimps, Micronesia, morphology, taxonomy},
	author = {de Mazancourt, Valentin and Marquet, G{\'e}rard and Philippe Keith}
}
@article {5285,
	title = {Present and future distribution of three aquatic plants taxa across the world: decrease in native and increase in invasive ranges},
	journal = {Biological Invasions},
	volume = {19},
	year = {2017},
	month = {04/2017},
	pages = {2159-2170},
	abstract = {<p>Inland aquatic ecosystems are vulnerable to both climate change and biological invasion at broad spatial scales. The aim of this study was to establish the current and future potential distribution of three invasive plant taxa, Egeria densa, Myriophyllum aquaticum and Ludwigia spp., in their native and exotic ranges. We used species distribution models (SDMs), with nine different algorithms and three global circulation models, and we restricted the suitability maps to cells containing aquatic ecosystems. The current bioclimatic range of the taxa was predicted to represent 6.6{\textendash}12.3\% of their suitable habitats at global scale, with a lot of variations between continents. In Europe and North America, their invasive ranges are predicted to increase up to two\&nbsp;fold by 2070 with the highest gas emission scenario. Suitable new areas will mainly be located to the north of their current range. In other continents where they are exotic and in their native range (South America), the surface areas of suitable locations are predicted to decrease with climate change, especially for Ludwigia spp. in South America (down to -55\% by 2070 with RCP 8.5 scenario). This study allows to identify areas vulnerable to ongoing invasions by aquatic plant species and thus could help the prioritisation of monitoring and management, as well as contribute to the public awareness regarding biological invasions.</p>
},
	doi = {10.1007/s10530-017-1428-y},
	url = {https://link.springer.com/article/10.1007/s10530-017-1428-y},
	author = {Gillard, Morgane and Thi{\'e}baut, Gabrielle and Deleu, Carole and Leroy, Boris}
}
@article {4860,
	title = {Proteomic response of Macrobrachium rosenbergii hepatopancreas exposed to chlordecone: Identification of endocrine disruption biomarkers?},
	journal = {Ecotoxicology and Environmental Safety},
	volume = {141},
	year = {2017},
	pages = {306-314},
	author = {Lafontaine, Anne and Baiwir, Dominique and Joaquim-Justo, C{\'e}lia and de Pauw, Edwin and Lemoine, Soazig and Boulang{\'e}-Lecomte, C{\'e}line and Jo{\"e}lle Forget-Leray and Thom{\'e}, Jean-Pierre and Gismondi, Eric}
}
@article {5016,
	title = {Rapid de novo assembly of the European eel genome from nanopore sequencing reads},
	journal = {Scientific Reports},
	volume = {7},
	year = {2017},
	pages = {7213},
	author = {J. Jansen and M. Liem and S. Jong-Raadsen and Sylvie Dufour and Weltzien, Finn-Arne and W. Swinkels and A. Koelewijn and A. Palstra and B. Pelster and H. Spaink and G. van den Thillart and Dirks, Ron and Christiaan V Henkel}
}
@article {4757,
	title = {Recurrent DCC gene losses during bird evolution},
	journal = {Scientific Reports},
	volume = {7},
	year = {2017},
	pages = {37569},
	author = {Friocourt, Fran{\c c}ois and Anne-Gaelle Lafont and Kress, Cl{\'e}mence and Pain, Bertrand and Manceau, Marie and Sylvie Dufour and Chedotal, Alain}
}
@article {5366,
	title = {Regional and latitudinal patterns of soft-bottom macrobenthic invertebrates along French coasts: Results from the RESOMAR database},
	journal = {Journal of Sea Research},
	volume = {130},
	year = {2017},
	pages = {96 - 106},
	abstract = {<p>This study aims to describe the patterns of soft bottom macrozoobenthic richness along French coasts. It is based on a collaborative database developed by the {\textquotedblleft}R{\'e}seau des Stations et Observatoires Marins{\textquotedblright} (RESOMAR). We investigated patterns of species richness in sublittoral soft bottom habitats (EUNIS level 3) at two different spatial scales: 1) seaboards: English Channel, Bay of Biscay and Mediterranean Sea and 2) 0.5{\textdegree} latitudinal and longitudinal grid. Total observed richness, rarefaction curves and three incidence-based richness estimators (Chao2, ICE and Jacknife1) were used to compare soft bottom habitats species richness in each seaboard. Overall, the Mediterranean Sea has the highest richness and despite higher sampling effort, the English Channel hosts the lowest number of species. The distribution of species occurrence within and between seaboards was assessed for each major phylum using constrained rarefaction curves. The Mediterranean Sea hosts the highest number of exclusive species. In pairwise comparisons, it also shares a lower proportion of taxa with the Bay of Biscay (34.1\%) or the English Channel (27.6\%) than that shared between these two seaboards (49.7\%). Latitudinal species richness patterns along the Atlantic and English Channel coasts were investigated for each major phylum using partial LOESS regression controlling for sampling effort. This showed the existence of a bell-shaped latitudinal pattern, highlighting Brittany as a hotspot for macrobenthic richness at the confluence of two biogeographic provinces.</p>
},
	keywords = {France, Latitudinal pattern, Regional pattern, Soft-bottom, Species richness, Zoobenthos},
	issn = {1385-1101},
	doi = {https://doi.org/10.1016/j.seares.2017.03.011},
	url = {http://www.sciencedirect.com/science/article/pii/S1385110116302660},
	author = {R{\'e}gis K. Gallon and Nicolas Lavesque and Jacques Grall and C{\'e}line Labrune and Antoine Gr{\'e}mare and Guy Bachelet and Hugues Blanchet and Paulo Bonif{\'a}cio and Vincent M.P. Bouchet and Jean-Claude Dauvin and Nicolas Desroy and Franck Gentil and Laurent Guerin and C{\'e}line Houbin and J{\'e}r{\^o}me Jourde and Sandrine Laurand and Michel Le Duff and Vincent Le Garrec and Xavier de Montaudouin and Fr{\'e}d{\'e}ric Olivier and Francis Orvain and Pierre-Guy Sauriau and Eric Thi{\'e}baut and Olivier Gauthier}
}
@article {4780,
	title = {Resource use of three juvenile scarids (Cryptotomus roseus, Scarus iseri, Sparisoma radians) in Caribbean seagrass beds},
	journal = {Aquatic Botany},
	volume = {136},
	year = {2017},
	pages = {1-8},
	abstract = {<p>The bucktooth parrotfish\&nbsp;<em>Sparisoma radians</em>, the striped parrotfish\&nbsp;<em>Scarus iseri</em>\&nbsp;and the bluelip parrotfish\&nbsp;<em>Cryptotomus roseus</em>\&nbsp;are three herbivorous fishes commonly found at juvenile stages in Caribbean seagrass beds. While the diet of the three species as adults is relatively well known, few studies have been conducted on the feeding patterns of juveniles. In this study, the resource use of the juveniles of three scarid species were studied using two complementary methods: gut content and stable isotope analyses (13C:12C and\&nbsp;15N:14N ratios). Bayesian mixing model approaches were used to calculate the contribution of each food item to fish diets (SIAR, mixing models). The three parrotfish species appeared to rely essentially on the consumption of fleshy macrophytes.\&nbsp;<em>Cryptotomus roseus</em>\&nbsp;consumed more benthic invertebrates and presented a higher trophic level than the two other scarid species.\&nbsp;<em>Scarus iseri\&nbsp;</em>presented a higher assimilation of benthic biofilm, in accordance with the high percentage of sediment in its gut content, and\&nbsp;<em>Sparisoma radians</em>\&nbsp;assimilated more\&nbsp;<em>Thalassia testudinum</em>\&nbsp;leaves. This research highlighted a food resources partitioning among the juveniles of the three herbivorous fishes, probably to avoid inter-specific competitive interactions for the most palatable food at a critical stage of their life.</p>

<p><strong>Keywords:\&nbsp;</strong>Gut content analyses; Trophic niche; Stable isotopes analyses</p>
},
	doi = {DOI: 10.1016/j.aquabot.2016.08.003},
	author = {Charlotte R. Dromard and Vaslet, Amandine and Gautier, F and Yolande Bouchon-Navaro and Mireille Harmelin-Vivien and Claude Bouchon}
}
@article {7512,
	title = {Revision of the species complex{\textquoteright}Neritina pulligera{\textquoteright}(Gastropoda, Cyclonetimorpha: Neritidae) using taxonomy and barcoding},
	journal = {Vie et Milieu / Life \& Environment},
	volume = {67},
	year = {2017},
	month = {2017},
	pages = {149-161},
	author = {Ahmed Abdou and Ren{\'e} Galzin and Clara Lord and Denys, Ga{\"e}l PJ and Philippe Keith}
}
@article {6811,
	title = {Saving Our Marine Archives},
	journal = {Eos},
	year = {2017},
	month = {Dec-02-2018},
	doi = {10.1029/2017EO068159},
	url = {https://eos.org/project-updates/saving-our-marine-archives},
	author = {Dassi{\'e}, Emilie and DeLong, Kristine and Kilbourne, Hali and Williams, Branwen and Abram, Nerilie and Brenner, Logan and Brahmi, Chlo{\'e} and Cobb, Kim and Corr{\`e}ge, Thierry and Dissard, Delphine and Emile-Geay, Julien and Evangelista, Heitor and Evans, Michael and Farmer, Jesse and Felis, Thomas and Gagan, Michael and Gillikin, David and Goodkin, Nathalie and Khodri, Myriam and Lavagnino, Ana and LaVigne, Mich{\`e}le and Claire E. Lazareth and Linsley, Braddock and Lough, Janice and McGregor, Helen and Nurhati, Intan and Ouellette, Gilman and Perrin, Laura and Raymo, Maureen and Rosenheim, Brad and Sandstrom, Michael and Sch{\"o}ne, Bernd and Sifeddine, Abdelfettah and Stevenson, Samantha and Thompson, Diane and Waite, Amanda and Wanamaker, Alan and Wu, Henry}
}
@article {5024,
	title = {Schismatogobius (Gobiidae) from Indonesia, with description of four new species},
	journal = {Cybium},
	volume = {41},
	year = {2017},
	month = {06/2017},
	pages = {195-211},
	abstract = {<p class="rtejustify">The species of Schismatogobius from Indonesia are reviewed and compared to the known species described from the area. Eight species are recognized including four new species. These are described using genetic and morphomeristic approaches. The species differ by a high percentage of genetic divergence in partial COI gene (652 bp) and by several characters including the number of pectoral fin rays, the pattern of the ventral surface of the head in males and/or females, the pectoral fin colour pattern, the jaw length/head length ratio or the jaw length of male and/or female.</p>
},
	keywords = {Gobiidae, Indonesia, New species, Schismatogobius},
	author = {Philippe Keith and Clara Lord and Darhuddin, H. and Limmon, G and Sukmono, T and Hadiaty, Renny and Hubert, Nicolas}
}
@article {5000,
	title = {Seasonal and latitudinal variation in seagrass mechanical traits across Europe: The influence of local nutrient status and morphometric plasticity},
	journal = {Limnology and Oceanography},
	year = {2017},
	abstract = {<p>Seagrasses are marine flowering plants distributed worldwide. They are however threatened, mostly due to the increase of human activities. Seagrasses have the capacity to adapt their morphological, physiological, and mechanical traits to their local conditions. Mechanical traits have been identified as a good tool to investigate a plant-species capacity to withstand physical forces or disturbances but are still sparsely studied in seagrasses. With this study, we aimed to assess how the mechanical traits of a broadly spread seagrass species vary along a latitudinal gradient in relation to its morphometric plasticity and nutrient status. We found that seagrasses acclimate their mechanical traits in relation to their physiological or morphological traits, both over the growing season and across a latitudinal range: leaves were weaker and thinner in northern areas, particularly at the end of the growing season. Besides the influence of the latitudinal gradient, leaf mechanical strength and stiffness were both strongly affected by their morphometric plasticity. Moreover, we showed that leaves mechanical traits change depending on their nutrient status: leaves were stronger and stiffer in oligotrophic conditions as compared to more eutrophic conditions. Thus, our results imply that, under eutrophication, leaves become weaker and thus more vulnerable to physical forces. This vulnerability is higher in the north at the end of the growing season. The latter is consistent with the more ephemeral character of northern seagrass meadows, in contrast to the more evergreen southern meadows.</p>
},
	doi = {10.1002/lno.10611},
	url = {http://onlinelibrary.wiley.com/doi/10.1002/lno.10611/full},
	author = {L.M. Soissons and M.M. van Katwijk and G. Peralta and F.G. Brun and P.G. Cardoso and T.F. Grilo and B. Ondiviela and M. Recio and M. Valle and J.M. Garmendia and F. Ganthy and I. Auby and L. Rigouin and Laurent Godet and J{\'e}r{\^o}me Fournier and Nicolas Desroy and L. Barill{\'e} and P. Kadel and R. Asmus and P.M.J. Herman and T.J. Bouma}
}
@article {7176,
	title = {Southern Ocean Echinoids database {\textendash} An updated version of Antarctic, Sub-Antarctic and cold temperate echinoid database.},
	journal = {ZooKeys},
	volume = {697},
	year = {2017},
	month = {Feb-09-2018},
	pages = {1 - 20},
	issn = {1313-2989},
	doi = {10.3897/zookeys.697.14746},
	url = {https://zookeys.pensoft.net/articles.php?id=14746},
	author = {Fabri-Ruiz, Salom{\'e} and Sauc{\`e}de, Thomas and Danis, Bruno and David, Bruno}
}
@article {5067,
	title = {Strat{\'e}gie de d{\'e}veloppement des outils de bio-indication en mangroves pour la DCE},
	year = {2017},
	month = {2017},
	pages = {25 pp},
	institution = {ONEMA - MNHN},
	abstract = {<p>Le deuxi{\`e}me s{\'e}minaire du GT DCE {\guillemotleft} mangroves {\guillemotright} a permis d{\textquoteright}{\'e}tablir une premi{\`e}re liste des descripteurs du bon {\'e}tat {\'e}cologique des mangroves du point de vue de la DCE, de finaliser le choix des param{\`e}tres pertinents pour la construction d{\textquoteright}outils de bioindication, et de poser les bases de la phase test d{\textquoteright}acquisition de donn{\'e}es qui permettra de construire les outils de bioindication. Le groupe de travail se donne pour objectif de disposer des premiers outils op{\'e}rationnels pour le prochain cycle de gestion de la DCE d{\'e}butant en 2022.\&nbsp;</p>
},
	author = {Guillaume Dirberg}
}
@article {5034,
	title = {Tempo and Rates of diversification in the South American Cichlid Genus Apistogramma (Teleostei: Perciformes: Cichlidae)},
	journal = {PLoS ONE },
	volume = {in press},
	year = {2017},
	author = {Tougard, C and Garcia Davila, C and R{\"o}mer, U and Fabrice Duponchelle and Cerqueira, F and Guinand, B and Angulo Ch{\'a}vez, C and Salas, V and Sophie Qu{\'e}rouil and Sirvas Cornero, S and Renno, Jean-Francois}
}
@article {5046,
	title = {Towards ecosystem-based management: identifying operational food-web indicators for marine ecosystems},
	journal = {ICES Journal of Marine Science},
	year = {2017},
	pages = {fsw230},
	author = {Tam, Jamie C and Link, Jason S and Rossberg, Axel G. and Rogers, Stuart I and Levin, Philip S and Rochet, Marie-Jo{\"e}lle and Bundy, Alida and Belgrano, Andrea and Libralato, Simone and Maciej Tomasz Tomczak and van de Wolfshaar, K and Pranovi, F and Gorokhova, E and Large, S I and Nathalie Niquil and Greenstreet, SPR and Druon, JN and Lesutiene, J and Johansen, M and Preciado, I and Patr{\'\i}cio, Joana and Palialexis, A and Tett, P and Johansen, GO and Houle, J and Rindorf, A}
}
@article {Tam20172040,
	title = {Towards ecosystem-based management: Identifying operational food-web indicators for marine ecosystems},
	journal = {ICES Journal of Marine Science},
	volume = {74},
	number = {7},
	year = {2017},
	note = {cited By 25},
	pages = {2040-2052},
	publisher = {Oxford University Press},
	abstract = {Modern approaches to Ecosystem-Based Management and sustainable use of marine resources must account for the myriad of pressures (interspecies, human and environmental) affecting marine ecosystems. The network of feeding interactions between co-existing species and populations (food webs) are an important aspect of all marine ecosystems and biodiversity. Here we describe and discuss a process to evaluate the selection of operational food-web indicators for use in evaluating marine ecosystem status. This process brought together experts in food-web ecology, marine ecology, and resource management, to identify available indicators that can be used to inform marine management. Standard evaluation criteria (availability and quality of data, conceptual basis, communicability, relevancy to management) were implemented to identify practical food-web indicators ready for operational use and indicators that hold promise for future use in policy and management. The major attributes of the final suite of operational food-web indicators were structure and functioning. Indicators that represent resilience of the marine ecosystem were less developed. Over 60 potential food-web indicators were evaluated and the final selection of operational food-web indicators includes: the primary production required to sustain a fishery, the productivity of seabirds (or charismatic megafauna), zooplankton indicators, primary productivity, integrated trophic indicators, and the biomass of trophic guilds. More efforts should be made to develop thresholds-based reference points for achieving Good Environmental Status. There is also a need for international collaborations to develop indicators that will facilitate management in marine ecosystems used by multiple countries. {\textcopyright} 2017 International Council for the Exploration of the Sea. All rights reserved.},
	keywords = {Biomass, coexistence, ecosystem approach, ecosystem management, ecosystem resilience, environmental assessment, environmental indicator, food web, marine ecosystem, primary production, strategic approach, trophic status},
	issn = {10543139},
	doi = {10.1093/icesjms/fsw230},
	url = {https://academic.oup.com/icesjms/article-abstract/74/7/2040/2970046},
	author = {Tam, J.C. and Link, J.S. and Rossberg, A.G. and Rogers, S.I. and Levin, P.S. and Rochet, M.-J. and Bundy, A. and Belgrano, A. and Libralato, S. and Maciej Tomasz Tomczak and Van De Wolfshaar, K. and Pranovi, F. and Gorokhova, E. and Large, S.I. and Nathalie Niquil and Greenstreet, S.P.R. and Druon, J.-N. and Lesutiene, J. and Johansen, M. and Preciado, I. and Patricio, J. and Palialexis, A. and Tett, P. and Johansen, G.O. and Houle, J. and Rindorf, A.}
}
@article {4988,
	title = {Toxicity assessment of five emerging pollutants, alone and in binary or ternary mixtures, towards three aquatic organisms},
	journal = {Environmental Science and Pollution Research},
	year = {2017},
	abstract = {<p>Despite a growing scientific attention on ecological impact of emerging pollutants (EPs) such as pharmaceuticals, personal care products, and pesticides, knowledge gaps remain regarding mixture toxicity and effects on aquatic organisms. Several EPs were screened in seawater (Normandy, France), and the ecotoxicity of five compounds, chosen on their occurrence in ecosystems and use worldwide, was assessed and were the biocides methylparaben (MP) and triclosan (TCS), a pesticide degradation product (AMPA), and the pharmaceuticals venlafaxine (VEN) and carbamazepine (CBZ). The acute or sub-chronic toxicity, alone or in binary/ternary mixtures of three of them (CBZ, AMPA, and MP), was assessed on one marine and two freshwater organisms: Crassostrea gigas, Pseudokirchneriella subcapitata, and Daphnia magna. TCS and AMPA were, respectively, the most (EC50 \&lt; 1 mg L-1) and the least (EC50 \&gt; 50 mg L-1) toxic chemicals for the four endpoints (algal growth inhibition, daphnia immobilization, oyster embryotoxicity, and metamorphosis). The anxiolytic VEN (EC50 \&lt; 1 mg L-1) was particularly toxic to oyster larvae showing sensitivity difference between freshwater and marine organisms. If all the mixtures appeared to be in the same range of toxicity, the joint-toxic effects mainly led to synergistic or antagonistic interactions compared to single-compound toxicity. The data also highlighted species-dependent differing models of toxicity and underscored the need for an awareness of cocktail effects for better ecological risk assessment.</p>
},
	keywords = {Freshwater species, Marine bivalve, Mixture and single-compound toxicity, Personal care products, Pesticides, pharmaceuticals},
	doi = {DOI 10.1007/s11356-017-9306-9},
	author = {Di Poi, Carole and Katherine Costil and Bouchart, Valerie and Halm-Lemeille, Marie-Pierre}
}
@article {8570,
	title = {Two new Tursiocola species (Bacillariophyta) epizoic on green turtles (Chelonia mydas) in French Guiana and Eastern Caribbean},
	journal = {Fottea},
	volume = {17},
	year = {2017},
	month = {Aug-09-2018},
	pages = {150 - 163},
	issn = {18025439},
	doi = {10.5507/fot.2017.007},
	url = {http://fottea.czechphycology.cz/doi/10.5507/fot.2017.007.html},
	author = {Riaux-Gobin, Catherine and Witkowski, Andrzej and Chevallier, Damien and Daniszewska-Kowalczyk, Genowefa}
}
@article {5022,
	title = {Visual census, photographic records and the trial of a video network provide first evidence of the elusive Sicyopterus cynocephalus in Australia},
	journal = {Cybium},
	volume = {41},
	year = {2017},
	month = {06/2017},
	pages = {117-125},
	abstract = {<p>Opportunistic encounters with an elusive large-bodied sicydiine goby in a single plunge pool led us to photograph and deploy three video cameras to detect individuals in that pool. Subsequently, a catchment-wide search indicated that the species, eventually identified as Sicyopterus cynocephalus, was confined to the single pool where it was originally detected. A network of ten video cameras was then deployed to estimate the number of individuals of that species and of a congener, S. lagocephalus, by non-destructive means. This study provides the first record of S. cynocephalus in Australia, and showcases the synergy of active snorkel searches and a remote camera network in counting individuals of two sympatric species of Sicyopterus.</p>
},
	keywords = {Australia, Coastal stream, Elusive species, First record, Gobiidae, Sicyopterus cynocephalus, Underwater video, Visual census},
	author = {Ebner, Brendan C and Donaldson, James and Allen, Gerald and Philippe Keith}
}
@article {5020,
	title = {When molecules and morphology work together: lines of evidence for the validity of Caridina buehleri Roux (Crustacea :Decapoda : Atyidae) and for C. gueryi Marquet, Keith and Kalfatak as its junior synonym},
	journal = {Invertebrate Systematics},
	volume = {31},
	year = {2017},
	month = {01/2017},
	pages = {220-230},
	abstract = {<p class="rtejustify">The taxonomy of the freshwater shrimps <em>Caridina</em> (Atyidae) is very complex and confused mostly because the morphological characters that have traditionally been used for species delimitation and identification are highly plastic. There is thus a need for an integrative approach to their taxonomy. In total, 42 specimens belonging to either <em>Caridina buehleri</em> Roux, 1934 or <em>Caridina gueryi</em> Marquet, Keith \&amp; Kalfatak, 2009 were examined. We combined here morphological data from 12 specimens from the whole distributional range of the species, including type specimens with 16S mtDNA analyses from seven freshly sampled specimens, to verify the specific status of <em>Caridina buehleri</em> from Papua New-Guinea, Central Sulawesi, Western Samoa and the Solomon Islands, and <em>C. gueryi</em> from Vanuatu. The comparison of 24 morphological characters showed that morphological variations of character traits between <em>C. gueryi</em> and <em>C. buehleri</em> are widely overlapping and that no morphological feature can effectively split specimens into two clear groups. Molecular characters corroborated these results, as specimens from both groups were only separated by a 2\% p-distance, a genetic distance that is coherent with their potentially high dispersal abilities. We thus consider <em>C. gueryi</em> as a junior synonym of <em>C. buehleri</em>. Finally, <em>C. buehleri</em> is characterised mainly by a styliform and characteristically indented rostrum and a long stylocerite. Detailed re-descriptions of the type specimens of <em>C. buehleri</em> and <em>C. gueryi </em>are given, as well as their geographical and ecological distribution.</p>
},
	keywords = {16S., freshwater shrimp, Indo-Pacific, Integrative taxonomy},
	author = {de Mazancourt, Valentin and Marquet, G{\'e}rard and Klotz, Werner and Philippe Keith and Castelin, Magalie}
}
@article {6707,
	title = {Ability of the marine bacterium Pseudomonas fluorescens BA3SM1 to counteract the toxicity of CdSe nanoparticles},
	journal = {Journal of Proteomics},
	volume = {148},
	year = {2016},
	month = {Jan-10-2016},
	pages = {213 - 227},
	issn = {18743919},
	doi = {10.1016/j.jprot.2016.07.021},
	url = {https://www.sciencedirect.com/science/article/pii/S187439191630330X?via\%3Dihub},
	author = {Poirier, Isabelle and Kuhn, Lauriane and Demorti{\`e}re, Arnaud and Mirvaux, Boris and Hammann, Philippe and Chicher, Johana and Christelle Caplat and Pallud, Marie and Bertrand, Martine}
}
@article {4506,
	title = {Activation of brain steroidogenesis and neurogenesis during the gonadal differentiation in protandrous black porgy, Acanthopagrus schlegelii.},
	journal = {Dev Neurobiol},
	volume = {76},
	year = {2016},
	month = {2016 Feb},
	pages = {121-36},
	abstract = {<p>The early brain development, at the time of gonadal differentiation was investigated using a protandrous teleost, black porgy. This natural model of monosex juvenile fish avoids the potential complexity of sexual dimorphism. Brain neurogenesis was evaluated by histological analyses of the diencephalon, at the time of testicular differentiation (in fish between 90 and 150 days after hatching). Increases in the number of both Nissl-stained total brain cells, and Pcna-immunostained proliferative brain cells were observed in specific area of the diencephalon, such as ventromedialis thalami and posterior preoptic area, revealing brain cell proliferation. qPCR analyses showed significantly higher expression of the radial glial cell marker blbp and neuron marker bdnf. Strong immunohistochemical staining of Blbp and extended cellular projections were observed. A peak expression of aromatase (cyp19a1b), as well as an increase in estradiol (E2 ) content were also detected in the early brain. These data demonstrate that during gonadal differentiation, the early brain exhibits increased E2 synthesis, cell proliferation, and neurogenesis. To investigate the role of E2 in early brain, undifferentiated fish were treated with E2 or aromatase inhibitor (AI). E2 treatment upregulated brain cyp19a1b and blbp expression, and enhanced brain cell proliferation. Conversely, AI reduced brain cell proliferation. Castration experiment did not influence the brain gene expression patterns and the brain cell number. Our data clearly support E2 biosynthesis in the early brain, and that brain E2 induces neurogenesis. These peak activity patterns in the early brain occur at the time of gonad differentiation but are independent of the gonads.</p>
},
	issn = {1932-846X},
	doi = {10.1002/dneu.22303},
	author = {Lin, Chien-Ju and Fan-Chiang, Yi-Chun and Sylvie Dufour and Chang, Ching-Fong}
}
@article {5423,
	title = {Activation of brain steroidogenesis and neurogenesis during the gonadal differentiation in protandrous black porgy, Acanthopagrus schlegelii.},
	journal = {Developmental Neurobiology},
	volume = {76},
	year = {2016},
	pages = {121-136},
	doi = {DOI: 10.1002/dneu.22303},
	author = {Lin, Chien-Ju and Fran-Chiang, Y C and Sylvie Dufour and Chang, Ching-Fong}
}
@article {4246,
	title = {Calcium Deposits in the Crayfish, Cherax quadricarinatus: Microstructure Versus Elemental Distribution},
	journal = {Microscopy and Microanalysis},
	volume = {22},
	year = {2016},
	pages = {22-38},
	type = {Journal Article},
	author = {Gilles Luquet and Yannicke Dauphin and Aline Percot and Murielle Salom{\'e} and Andreas Ziegler and Maria S. Fernandez and Jos{\'e} L. Arias}
}
@article {4041,
	title = {The Channel ecosystem, a cross-roads of anthropogenic pressures and scientific studies: Lessons learned from the European \{INTERREG\} \{IV\} projects (2009{\textendash}2015)},
	journal = {Marine Policy},
	volume = {63},
	year = {2016},
	month = {11/2015},
	pages = {158 - 165},
	author = {L Evariste and Pascal Claquin and Jean-Paul Robin and Arnaud Auber and Abigail McQuatters-Gollop and Jean-Claude Dauvin}
}
@conference {4385,
	title = {Comparison of MODIS and LANDSAT-8 retrievals of chlorophyll-a and water temperature over lake Titicaca},
	booktitle = {IEEE International Symposium},
	year = {2016},
	publisher = {Geoscience and Remote Sensing (IGARSS)},
	organization = {Geoscience and Remote Sensing (IGARSS)},
	address = {10-15 july 2016, Beijing, China},
	author = {Ruiz-Verd{\'u}, A and Jim{\'e}nez, JC and Lazzaro, Xavier and Tango, C and Delegido, J and Pereira, M and Sobrino, JA and Moreno, J}
}
@article {4509,
	title = {A comparison of techniques for studying oogenesis in the European eel Anguilla anguilla.},
	journal = {J Fish Biol},
	year = {2016},
	month = {2016 Aug 8},
	abstract = {<p>A multi-technique approach was used to study the changes occurring in European eel Anguilla anguilla ovaries during hormonally-induced vitellogenesis. Aside from classic techniques used to monitor the vitellogenic process, such as ovary histology, fat content analysis, sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and vitellogenin enzyme linked immunosorbent assay (ELISA), a new technique, Fourier-transform infrared (FT-IR) microspectroscopy, was used to analyse A. anguilla ovaries. The results from the different techniques provided different ways of approaching the same process. Although it is considered a time consuming approach, of all the employed techniques, histology provided the most direct evidences about vitellogenesis. SDS-PAGE and ELISA were also useful for studying vitellogenesis, whereas fat analysis cannot be used for this purpose. The FT-IR analysis provided a representative IR spectrum for each ovarian stage (previtellogenic stage, early vitellogenic stage, mid-vitellogenic stage and late vitellogenic stage), demonstrating that it is a valid method able to illustrate the distribution of the oocytes within the ovary slices. The chemical maps obtained confirmed changes in lipid concentrations and revealed their distribution within the oocytes at different maturational stages. When the results and the accuracy of the FT-IR analysis were compared with those of the traditional techniques commonly used to establish the vitellogenic stage, it became evident that FT-IR is a useful and reliable tool, with many advantages, including the fact that it requires little biological material, the costs involved are low, analysis times are short and last but not least, the fact that it offers the possibility of simultaneously analysing various biocomponents of the same oocyte.</p>
},
	issn = {1095-8649},
	doi = {10.1111/jfb.13103},
	author = {Mazzeo, I and Giorgini, E and Gioacchini, G and Maradonna, F and V{\'\i}lchez, M C and Sylvie Baloche and Sylvie Dufour and P{\'e}rez, L and Carnevali, O and Asturiano, J F}
}
@article {4214,
	title = {Determinants of local and regional communities in intermittent and perennial headwaters of the Bolivian Amazon},
	journal = {Freshwater Biology},
	year = {2016},
	abstract = {<p>SUMMARY</p>

<p>1. The effect of drying events on aquatic biodiversity is still overlooked in wet Neotropical systems. Yet, the responses of local communities and metacommunities in these biodiversity hotspots may differ from what is reported in other areas.<br />
2. We addressed the effect of drying events on local and regional fish and macroinvertebrate communities in the headwaters of the Chipiriri River basin, in the wet Neotropical piedmont of Bolivia. According to current knowledge in intermittent rivers and ephemeral streams (IRES) ecology, we predicted that intermittent (INT) sites would harbour lower a-diversity, but higher b-diversity, than perennial (PER) sites, due to local, negative effect of drying combined with the existence of multiple recovery stages at the network scale.</p>

<p>3. Although habitat variables were similar between INT and PER sites, local and regional diversity patterns differed. Local invertebrate communities were not different between site types as soon as 4{\textendash}6 weeks after flow resumption. The proximity of colonist sources and frequent rainfall probably enhanced persistence through dry periods and high resilience. In contrast, fish communities were still poorer at INT than PER sites, indicating they were still in the process of recolonising upstream INT reaches.</p>

<p>4. b-diversity analyses confirmed that invertebrate and fish metacommunities were not at the same recovery stage because (i) b-diversity of invertebrates was best explained by physical and environmental distances at both INT and PER sites, whereas that of fish was explained only by physical distances at INT sites; (ii) fish b-diversity was higher at INT than at PER sites, but invertebrate b-diversity was similar; and (iii) physical distances were correlated with the turnover component of invertebrate b-diversity but with the nestedness component for fish.</p>

<p>5. Exploring regional community patterns in IRES and across biota with different dispersal abilities and modes can advance metacommunity theory and improve our ability to predict local community composition in dynamic ecosystems.</p>
},
	doi = {doi:10.1111/fwb.12706},
	author = {T. Datry and N. Moya and J. Zubieta and Thierry Oberdorff}
}
@article {6812,
	title = {Development of laser ablation multi-collector inductively coupled plasma mass spectrometry for boron isotopic measurement in marine biocarbonates: new improvements and application to a modern <i>Porites</i>               coral},
	journal = {Rapid Communications in Mass Spectrometry},
	volume = {30},
	year = {2016},
	month = {Mar-02-2017},
	pages = {359 - 371},
	abstract = {RATIONALE: Laser Ablation coupled to Multi-Collector Inductively Coupled Plasma Mass Spectrometry (LA-MCICPMS)<br />
is a powerful tool for the high-precision measurement of the isotopic ratios of many elements in geological<br />
samples, with the isotope ratio (11B/10B) of boron being used as an indicator of the pH of oceanic waters. Most geological<br />
samples or standards are polished and ablation occurs on flat surfaces. However, the shape and the irregularities of<br />
marine biocarbonates (e.g., corals, foraminifera) can make precise isotopic measurements of boron difficult. Even after<br />
polishing, the porosity properties and the presence of holes or micro-fractures affect the signal and the isotopic ratio<br />
when ablating the material, especially in raster mode.<br />
METHODS: The effect of porosity and of the crater itself on the 11B signal and the isotopic ratio acquired by LA-MCICPMS<br />
in both raster and spot mode was studied. Characterization of the craters was then performed with an optical<br />
profilometer to determine their shapes and depths. Surface state effects were examined by analyzing the isotopic<br />
fractionation of boron in silicate (NIST-SRM 612 and 610 standards) and in carbonate (corals).<br />
RESULTS: Surface irregularities led to a considerable loss of signal when the crater depth exceeded 20 μm. The stability<br />
and precision were degraded when ablation occurred in a deep cavity. The effect of laser focusing and of blank correction<br />
was also highlighted and our observations indicate that the accuracy of the boron isotopic ratio does not depend on the<br />
shape of the surface. After validation of the analytical protocol for boron isotopes, a raster application on a Porites coral,<br />
which grew for 18 months in an aquarium after field sampling, was carried out.<br />
CONCLUSIONS: This original LA-MC-ICPMS study revealed a well-marked boron isotope ratio temporal variability,<br />
probably related to growth rate and density changes, irrespective of the pH of the surrounding seawater.},
	doi = {10.1002/rcm.7448},
	url = {http://doi.wiley.com/10.1002/rcm.7448},
	author = {Thil, Fran{\c c}ois and Blamart, Dominique and Assailly, Caroline and Claire E. Lazareth and Leblanc, Thierry and Butsher, John and Douville, Eric}
}
@article {Lamy201629,
	title = {Dinard Herbarium: History of a Marine Station1},
	journal = {Cryptogamie, Algologie},
	volume = {37},
	number = {1},
	year = {2016},
	note = {cited By 2},
	pages = {29-45},
	doi = {10.7872/crya/v37.iss1.2016.29},
	url = {https://bioone.org/journals/Cryptogamie-Algologie/volume-37/issue-1/v37.iss1.2016.29/Dinard-Herbarium-History-of-a-Marine-Station1/10.7872/crya/v37.iss1.2016.29.short},
	author = {Lamy, Dominique and Robuchon, Marine and Kervran, L. and Dennetiere, B. and Eric Feunteun and Le Gall, L.}
}
@article {4413,
	title = {Effects of an environmentally relevant concentration of diuron on oyster genitors during gametogenesis: responses of early molecular and cellular markers and physiological impacts.},
	journal = {Environ Sci Pollut Res Int},
	volume = {23},
	year = {2016},
	month = {2016 Apr},
	pages = {8008-20},
	abstract = {<p>Genitors of the Pacific oyster Crassostrea gigas were submitted during gametogenesis to a short pulse exposure to the herbicide diuron at a realistic environmental concentration. Histological analysis showed no effect of diuron on gametogenesis course, sex ratio and reproductive effort. A non-significant increase in testosterone and progesterone levels was observed in genitors exposed to the herbicide. At cell level, diuron exposure was shown to modulate the phagocytic activity of circulating hemocytes. The results of a transcriptional analysis showed that diuron affected the expression of genes belonging to functions known to play a major role during oyster gametogenesis such as gene transcription regulation, DNA replication and repair, DNA methylation and cytokinesis. Taking into account the results we previously obtained on the same genitors, this study showed a negative effect of diuron on oyster reproduction by inducing both structural and functional modifications of the DNA.</p>
},
	issn = {1614-7499},
	doi = {10.1007/s11356-015-5969-2},
	author = {Akcha, F and Barranger, A and Bach{\`e}re, E and Clothilde Heude-Berthelin and Piquemal, D and Alonso, P and Sallan, R Rondon and Dimastrogiovanni, G and Porte, C and Menard, D and Szczybelski, A and Benabdelmouna, A and Auffret, M and Rouxel, J and Burgeot, T}
}
@article {4281,
	title = {Effects of chlordecone on 20-hydroxyecdysone concentration and chitobiase activity in a decapod crustacean, Macrobrachium rosenbergii},
	journal = {Aquatic toxicology},
	year = {2016},
	abstract = {<p>Chlordecone (CLD) is an organochlorine insecticide abundant in aquatic environment of the French West Indies. However, few studies have investigated its impact on freshwater invertebrates. WhereasCLD is suspected of inducingendocrine disruption,this work aimed to study the effects of environmentally relevant concentrations of CLD on the 20-hydroxyecdysone (20-HE) hormone concentration and on the chitobiase activity, both having key roles in the molting process of crustaceans. In addition, the bioaccumulation of CLD was measured in the muscle tissueof Macrobrachium rosenbergiito underline potential dose-response relationship. The results have shown that CLD was bioaccumulated in exposed organisms according to a trend to a dose-response relationship. Moreover, it was observed that CLD decreased the 20-HE concentration in exposed prawns when compared to control, whatever the duration of exposure, as well as it inhibited the chitobiase activity after 30 days of exposure. The present study indicates that CLD could interfere with molting process of M. rosenbergiiby disturbing the 20-HE concentration and the activity of chitobiase, suggesting consequences at the long term on the shrimp development. This study also confirmed that CLD could be an endocrine disruptor in decapod crustaceans, as it was already observed in vertebrates.</p>
},
	keywords = {20-Hydroxyecdysone, Chitobiase, Chlordecone, Endocrine Disruptors, Macrobrachium rosenbergii},
	doi = {10.1016/j.aquatox.2016.04.006},
	author = {Lafontaine, Anne and Gismondi, Eric and Boulang{\'e}-Lecomte, C{\'e}line and Gerraudie, Perrine and Dodet, Nathalie and Campos, Fanny and Lemoine, Soazig and Lagadic, Laurent and Thom{\'e}, Jean-Pierre and Jo{\"e}lle Forget-Leray}
}
@article {4053,
	title = {Environmental correlates of body size distribution in Cyprinidae (Actinopterygians) depend on phylogenetic scale},
	journal = {Ecology of Freshwater Fish},
	volume = {25},
	year = {2016},
	pages = {125-132},
	abstract = {<p>ABSTRACT: The pattern of increasing species body size with increasing latitude has been noticed in different groups of animals. Here, we used seven key environmental factors and independent contrasts to assess body size latitudinal clines in Cyprinidae at two phylogenetic levels (inter- and intragenera), which were defined using a genus-level supertree. Model selection procedures revealed that environmental factors shaping body size variation in Cyprinidae differed according to the phylogenetic scale considered. At the higher phylogenetic level, we found that both temperature (negative effect) and habitat availability (positive effect of drainage basin surface area) constituted mechanistic explanations of large-scale body size distribution. No temperature-related body size cline was observed at the intragenus level. Instead, competitive interaction (negative effect of species richness), habitat availability (positive effect of drainage basin surface area), migration ability and available energy (positive effects of glacial coverage and actual evapotranspiration) constitute alternative explanations at this lower phylogenetic scale. We conclude that (i) at the intergenus level, cyprinids do show a tendency to be smaller at high temperatures and larger at low temperatures, (ii) this tendency no longer exists at the intragenus level, (iii) latitude per se is a weak predictor of body size clines whatever the taxonomic level analysed, (iv) generalising geographical body size patterns may be rendered difficult by the superimposition of a series of mechanisms across different taxonomic scales, and (v) habitat size, here acting positively at both taxonomic scales, may play a major role in shaping riverine species body size clines.<br />
\&nbsp;</p>
},
	doi = {DOI:10.1111/eff.12196},
	author = {G. Denys and Pablo Tedesco and Thierry Oberdorff and P. Gaubert}
}
@article {6896,
	title = {Estimating Symbiont Abundances and Gill Surface Areas in Specimens of the Hydrothermal Vent Mussel Bathymodiolus puteoserpentis Maintained in Pressure Vessels},
	journal = {Frontiers in Marine Science},
	volume = {3},
	year = {2016},
	month = {Apr-02-2017},
	doi = {10.3389/fmars.2016.00016},
	url = {http://journal.frontiersin.org/Article/10.3389/fmars.2016.00016/abstract},
	author = {Duperron, S{\'e}bastien and Quiles, Adrien and Szafranski, Kamil M. and L{\'e}ger, Nelly and Bruce Shillito}
}
@article {5039,
	title = {Evaluating ecosystem-level anthropogenic impacts in a stressed transitional environment: The case of the Seine estuary},
	journal = {ECOLOGICAL INDICATORS},
	volume = {61},
	year = {2016},
	month = {02/2016},
	pages = {833-845},
	abstract = {<p class="rtejustify">During 2002-2005, a new container terminal in the commercial harbour of Le Havre, named "Port2000", was built on the northern flank of the Seine estuary, northern France. This extension is already known to have modified the estuary current and sediment dynamics, as well as reducing biomass of the suprabenthos assemblage, for the whole downstream part of the system. However, studies on other biotic communities were largely inconclusive, and an ecosystem-wide analysis was still lacking. Here, we performed a before/after study of ecosystem dynamics of the different habitats of the Seine estuary, using a Linear Inverse Modelling technique (LIM-MCMC) to estimate all flows occurring in the food web. Ecological Network Analysis indices were calculated, summarising ecosystem functioning traits and giving indications about the habitat health status. Results showed that the southern flank (FS, Fosse Sud) exhibits all characteristics to be considered as the least stressed habitat of the estuary: system activity and functional specialisation of flows were stable between periods, ecosystem recycling processes and detrital dynamics were also stable; an increase in trophic specialisation (decrease in system omnivory) was the only change confirming a general ecological succession. The northern flank (FN, Fosse Nord), where the actual terminal was built, showed a food web with increased importance of lower trophic levels (increased detritivory and carbon recycling), increased stability and flow efficiency, but possibly regressed to a previous step in ecological succession. In the central navigation channel (CH), patterns of network indices were overall inconclusive and the general image is one of a constantly shifting food web, a condition possibly caused by the year-round dredging activities. The functioning of the Seine estuary especially of FN and FS - seems to have been modified by the combination of harbour construction and the related mitigation measures. Network indices partially captured this combination of changes and, although not fully operational yet, they are promising tools to comply with the European Union mandate of defining ecosystem health status. (c) 2015 Elsevier Ltd. All rights reserved.</p>
},
	issn = {{1470-160X}},
	doi = {{10.1016/j.ecolind.2015.10.036}},
	author = {Samuele Tecchio and Chaalali, Aur{\'e}lie and Raoux, Aurore and Rius, Armonie Tous and Lequesne, Justine and Girardin, Valerie and G{\'e}raldine Lassalle and Cachera, Marie and Riou, P and Lobry, Jeremy and Dauvin, Jean-Claude and Nathalie Niquil}
}
@article {4412,
	title = {Extreme landscapes decrease taxonomic and functional bird diversity but promote the presence of rare species},
	journal = {Acta Ornithologica},
	volume = {51},
	year = {2016},
	abstract = {<p>Human activities may generate geometrical landscape (i.e. composed of rectilinear and repetitive landscape units) structures that can significantly influence the spatial distribution of birds. While bird distribution in various landscape types has been extensively studied, the role played by landscape configuration and composition in different facets of bird diversity remains unclear. Here, these two main components of landscape characteristics (i.e. configuration and composition) are disentangled and their relative influence on three different facets of bird assemblages: taxonomic and functional characteristics, and the presence of rare species, is tested. We chose four large coastal salinas of Western France as a relevant model of geometrical and human-dominated landscapes where each landscape unit can be easily identified and mapped. The landscape characteristics of these sites were mapped and quantified. Then, terrestrial breeding birds were sampled in 172 point-counts using a standardized protocol. 69 diurnal terrestrial bird species were detected and considered in analyses (waterbirds and owls excluded). Landscape composition was found to have a higher influence on bird communities than landscape configuration, which fits with the {\textquotedblleft}landscape composition hypothesis{\textquotedblright}. More specifically, the most {\textquotedblleft}extreme{\textquotedblright} landscapes {\textemdash} those with low terrestrial surface areas, low landscape richness and diversity, low cohesion, and very patchy landscapes with complex geometrical shapes {\textemdash} host the lowest bird taxonomic abundance, richness and diversity and functional richness, but are characterized by the presence of rare species (mainly wetland specialist species, e.g. Reed Bunting Emberiza schoeniclus and species with restricted ranges e.g. Bluethroat Luscinia svecica namnetum). Our results suggest that conservation plans in such geometrical and human-dominated habitats should not only focus on one aspect of landscape characteristics or one aspect of biological diversity but also consider the adverse effects of landscape characteristics on these different facets.<br />
\&nbsp;</p>
},
	doi = {10.3161/00016454AO2016.51.1.003},
	author = {Laurent Godet and Vincent Devictor and Fran{\c c}oise Burel and Jean-Guy Robin and Lo{\"\i}c M{\'e}nanteau and J{\'e}r{\^o}me Fournier}
}
@article {4637,
	title = {First record of Siganus randalli (Teleost, Siganidae) in New Caledonia, and comments on its diet},
	journal = {Marine Biodiversity Records},
	volume = {9},
	year = {2016},
	month = {11/2016},
	pages = {1-5},
	abstract = {<p>Background: Most of the 29 Siganidae species are widely distributed through the Indo-Pacific area. In New<br />
Caledonia, these family was represented by 12 species. The present report is the first record of Siganus randalli in New<br />
Caledonian waters and provide information on its diet.<br />
Methods: Three specimens of Siganus randalli were caught in shallow mangrove waters of the southern part of New<br />
Caledonia. Their stomach contents and isotopic signatures (carbon and nitrogen) were analyzed and compared to<br />
others siganids species.<br />
Results and conclusion: This note provides the most southerly record of the rabbitfish Siganus randalli, which extends<br />
its distribution range by 1200 km southward and 1300 km southwest. The data on its diet, when compared with other<br />
co-occurring or more reef-associated siganid species, provide information on feeding processes and ecological<br />
functions associated with its mangrove habitat.<br />
Keywords: Variegated rabbitfish, Diet, Stomach content, Isotope, SW pacific<br />
Abbreviations: ADECAL, Agence de d{\'e}veloppement {\'e}conomique de la Nouvelle-Cal{\'e}donie; ARR, Arr{\^e}t{\'e};<br />
C, Carbon; DENV, Direction de l{\textquoteright}environnement; G, grams; IRI, Index of relative importance; LIVE, Laboratoire<br />
insulaire du vivant et de l{\textquoteright}environnement; MM, millimeter; N, Nitrogen; SD, standard deviation; TL, Total length;<br />
UNC, Universit{\'e} de la Nouvelle-Cal{\'e}donie</p>
},
	doi = {DOI 10.1186/s41200-016-0082-x},
	author = {Thibaud Moleana and Luc Della-Patrona and Tarik Meziane and Yves Letourneur}
}
@article {4507,
	title = {Functional characterization of eel dopamine D2 receptors and involvement in the direct inhibition of pituitary gonadotropins.},
	journal = {J Neuroendocrinol},
	year = {2016},
	month = {2016 Jul 25},
	abstract = {<p>In various vertebrate species, dopamine (DA) exerts an inhibitory action on reproduction. In the European eel, DA plays a pivotal role in the inhibitory control of the gonadotrope function and the blockade of puberty. In vivo studies suggested that this effect is mediated by receptors pharmacologically related to the D2-family. In the European eel, two distinct D2 receptor (D2-R) paralogous genes have been identified (D2A-R and D2B-R) and both shown to be expressed in the pituitary. We investigated the potential role of each paralog in the control of gonadotrope function in this species. Eel recombinant D2A-R or D2B-R were expressed in HEK 293 cells, with a universal Gα subunit, and receptor activation was followed by inositol phosphate production. Recombinant D2-Rs exhibited a comparable affinity for DA, but differential affinities for mammalian D2-R agonists and antagonists, supporting subtle structure/activity differences. Further, using eel pituitary cell primary cultures, the expression by gonadotrope cells of both native eel D2-R paralogs was examined by in situ hybridisation of D2A-R or D2B-R transcripts, coupled to immunofluorescence of LHβ or FSHβ. LH and to a lesser extent, FSH cells expressed both D2-R transcripts, but with a clear predominance of D2B-R. Notably, D2B- R transcripts were detected on the majority of LH cells. Accordingly, using these cultures, we showed that DA potently inhibited basal and testosterone-stimulated LHβ expression and less potently basal and activin-stimulated FSHβ expression. We also tested some D2-R antagonists in order to select the most adequate one to be used in innovative protocols for induction of eel sexual maturation. We identified eticlopride as the most potent inhibitor of DA action on basal and stimulated LH expression in vitro. Our data suggest a differential functionalisation of the duplicated receptor genes and demonstrate that mainly D2B-R is involved in the dopaminergic inhibitory control of eel gonadotrope function. This article is protected by copyright. All rights reserved.</p>
},
	issn = {1365-2826},
	doi = {10.1111/jne.12411},
	author = {Jolly, C and Karine Rousseau and Pr{\'e}zeau, L and Vol, C and Tomkiewicz, J and Sylvie Dufour and Pasqualini, C}
}
@article {4226,
	title = {Geographic variation in stable isotopic and fatty acid composition of anguilliform leptocephali and particulate organic matter in the South Pacific},
	journal = {Marine Ecology and Progress Series},
	volume = {544},
	year = {2016},
	pages = {225-241},
	abstract = {<p>The feeding ecology of leptocephali has remained poorly understood because they apparently feed on particulate organic matter (POM), which varies in composition, and it is unclear which components of the POM they assimilate. The δ13C and δ15N stable isotope (SI) and fatty acid (FA) compositions of 3 families of leptocephali and POM were compared in 3 latitudinal current zones of the western South Pacific. The δ15N signatures of leptocephali and POM overlapped, with both having their lowest values in the southern current zone. POM in general (across all zones) contained 38 FAs and was rich in saturated FAs (SFA) (16:0, 18:0, 14:0), while leptocephali contained 50 FAs, with high proportions of 16:0, and higher contributions of 22:6ω3, 20:5ω3, 18:1ω9, 16:1ω7 and other FAs than found in the POM. Serrivomeridae leptocephali in the north had higher δ15N signatures and were also distinguished from Nemichthyidae and Muraenidae larvae by their FA compositions (higher SFAs, lower 22:6ω3 and 20:5ω3). Although SI signatures of the Serrivomeridae larvae did not clearly vary with size, 16:0 and 18:0 FA proportions decreased with increasing larval size, and 22:6ω3 and 16:1ω7 increased in larger larvae. Correspondences between the latitudinal variations in nitrogen SI signatures and FA compositions of POM with those of leptocephali and the presence of FA markers of both autotrophic and heterotrophic organisms were consistent with leptocephali feeding on POM. POM can contain various materials from primary producers and heterotrophic microorganisms, but differences in the SI signatures and FA compositions in leptocephali remain to be explained through further research.</p>
},
	keywords = {Leptocephali {\textperiodcentered} Fatty acids {\textperiodcentered} Stable isotopes {\textperiodcentered} Biomarkers {\textperiodcentered} Trophic ecology {\textperiodcentered} Oceanic currents},
	isbn = {doi:10.3354/meps11575 },
	author = {Li{\'e}nart, Camilla and Eric Feunteun and Miller, M J and Aoyama, J and Jean-Michel Mortillaro and C{\'e}dric Hubas and Kuroki, M and Watanabe, S and Christine Dupuy and Alexandre Carpentier and Otake, T and Tsukamoto, K and Tarik Meziane}
}
@article {4527,
	title = {High-resolution structural and elemental analyses of calcium storage structures synthesized by the noble crayfish Astacus astacus.},
	journal = {J Struct Biol},
	year = {2016},
	month = {2016 Sep 6},
	abstract = {<p>During premolt, crayfish develop deposits of calcium ions, called gastroliths, in their stomach wall. The stored calcium is used for the calcification of parts of the skeleton regularly renewed for allowing growth. Structural and molecular analyses of gastroliths have been primarily performed on three crayfish species, Orconectes virilis, Procambarus clarkii, and more recently, Cherax quadricarinatus. We have performed high-resolution analyses of gastroliths from the native noble crayfish, Astacus astacus, focusing on the microstructure, the mineralogical and elemental composition and distribution in a comparative perspective. Field emission scanning electron microscopy (FESEM) and atomic force microscopy (AFM) observations showed a classical layered microstructure composed of 200-nm diameter granules aligned along fibers. These granules are themselves composed of agglomerated nanogranules of 50nm-mean diameters. Denser regions of bigger fused granules are also present. Micro-Raman spectroscopy show that if A. astacus gastroliths, similarly to the other analyzed gastroliths, are mainly composed of amorphous calcium carbonate (ACC), they are also rich in amorphous calcium phosphate (ACP). The presence of a carotenoid pigment is also observed in A. astacus gastrolith contrary to C. quadricarinatus. Energy-dispersive X-ray spectroscopy (EDX) analyses demonstrate the presence of minor elements such as Mg, Sr, Si and P. The distribution of this last element is particularly heterogeneous. X-ray absorption near edge structure spectroscopy (XANES) reveals an alternation of layers more or less rich in phosphorus evidenced in the mineral phase as well as in the organic matrix in different molecular forms. Putative functions of the different P-comprising molecules are discussed.</p>
},
	issn = {1095-8657},
	doi = {10.1016/j.jsb.2016.09.001},
	author = {Gilles Luquet and Salom{\'e}, Murielle and Ziegler, Andreas and Paris, C{\'e}line and Percot, Aline and Dauphin, Yannicke}
}
@article {4346,
	title = {How do macrobenthic resources concentrate foraging waders in large megatidal sandflats?},
	journal = {Estuarine, Coastal and Shelf Science},
	year = {2016},
	abstract = {<p>The relationship between foraging shorebirds, macrobenthos and sedimentary parameters has been widely studied across Western Europe. Megatidal areas have large zones uncovered when the water retreats. Consequently, in such cases, the tide also influences foraging activities. This paper examines the use of an intertidal space by waders to define how macrobenthic resource concentrates foraging activity of birds in a large megatidal sandflat. This approach combines accurate spatial distribution of waders (Oystercatcher, Eurasian curlew, Bar-tailed Godwit and Redknot) according to their activity with ecological/biological parameters. A differential exploitation of the flat is clearly shown, with macrobenthic biomass appearing as one of the main explanatory factor for the four species considered on the western part of the bay and altitude (shore elevation) in the eastern part. The novelty of this study relates to the large area, also presumed to be a functional unit, while considering at the same time the singularities of the different parts of the flat. This multi-scale approach identifies important factors influencing the differential distribution patterns observed. The different selected parameters present an important variability in their contribution, underlining the complexity of explaining the distribution of foraging birds. Consequently, the study of such complex phenomena needs to consider additional variables to improve the relevance of explanatory models.</p>
},
	doi = {10.1016/j.ecss.2016.05.023},
	author = {Ponsero, Alain and Sturbois, Anthony and Nicolas Desroy and Patrick Le Mao and Jones, Auriane and J{\'e}r{\^o}me Fournier}
}
@article {4417,
	title = {Image analysis-based classification of pigmentation patterns in fish: A case study of pseudo-albinism in Senegalese sole},
	journal = {Aquaculture},
	volume = {464},
	year = {2016},
	pages = {303 - 308},
	keywords = {Pseudo-albinism},
	issn = {0044-8486},
	doi = {http://dx.doi.org/10.1016/j.aquaculture.2016.06.040},
	url = {http://www.sciencedirect.com/science/article/pii/S0044848616303441},
	author = {Wishkerman, A and Boglino, A and Darias, Maria and Andree, K B and Est{\'e}vez, A and Gisbert, E}
}
@article {8577,
	title = {The influence of oceanographic features on the foraging behavior of the olive ridley sea turtle Lepidochelys olivacea along the Guiana coast},
	journal = {Progress in Oceanography},
	volume = {142},
	year = {2016},
	month = {Jan-03-2016},
	pages = {58 - 71},
	issn = {00796611},
	doi = {10.1016/j.pocean.2016.01.006},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0079661115300094},
	author = {Chambault, Philippine and de Thoisy, Beno{\^\i}t and Heerah, Karine and Conchon, Anna and Barrioz, S{\'e}bastien and Dos Reis, Virginie and Berzins, Rachel and Kelle, Laurent and Picard, Baptiste and Roquet, Fabien and Le Maho, Yvon and Chevallier, Damien}
}
@article {4575,
	title = {Insights from the shell proteome: biomineralization to adaptation.},
	journal = {Mol Biol Evol},
	year = {2016},
	month = {2016 Oct 15},
	abstract = {<p>Bivalves have evolved a range of complex shell forming mechanisms that are reflected by their incredible diversity in shell mineralogy and microstructures. A suite of proteins exported to the shell matrix space plays a significant role in controlling these features, in addition to underpinning some of the physical properties of the shell itself. Although, there is a general consensus that a minimum basic protein tool kit is required for shell construction, to date, this remains undefined. In this study the shell matrix proteins (SMPs) of four highly divergent bivalves (The Pacific oyster, Crassostrea gigas; the blue mussel, Mytilus edulis; the clam, Mya truncata and the king scallop, Pecten maximus) were analyzed in an identical fashion using proteomics pipeline. This enabled us to identify the critical elements of a "basic tool kit" for calcification processes, which were conserved across the taxa irrespective of the shell morphology and arrangement of the crystal surfaces. In addition, protein domains controlling the crystal layers specific to aragonite and calcite were also identified. Intriguingly, a significant number of the identified SMPs contained domains related to immune functions. These were often are unique to each species implying their involvement not only in immunity, but also environmental adaptation. This suggests that the SMPs are selectively exported in a complex mix to endow the shell with both mechanical protection and biochemical defense.</p>
},
	issn = {1537-1719},
	doi = {10.1093/molbev/msw219},
	author = {Arivalagan, Jaison and Yarra Teja and Marie, Benjamin and Sleight, Victoria A and Duvernois-Berthet, Evelyne and Clark, Melody S and Marie, Arul and Berland, Sophie}
}
@article {8576,
	title = {Inter-nesting behavioural adjustments of green turtles to an estuarine habitat in French Guiana},
	journal = {Marine Ecology Progress Series},
	volume = {555},
	year = {2016},
	month = {Jun-08-2017},
	pages = {235 - 248},
	issn = {0171-8630},
	doi = {10.3354/meps11813},
	url = {http://www.int-res.com/abstracts/meps/v555/p235-248/},
	author = {Chambault, P and de Thoisy, B and Kelle, L and Berzins, R and Bonola, M and Delvaux, H and Le Maho, Y and Chevallier, D}
}
@article {6813,
	title = {Intra-skeletal calcite in a live-collected Porites sp.: Impact on environmental proxies and potential formation process},
	journal = {Geochimica et Cosmochimica Acta},
	volume = {176},
	year = {2016},
	month = {Jan-03-2016},
	pages = {279 - 294},
	abstract = {Geochemical proxies measured in the carbonate skeleton of tropical coral Porites sp. have commonly been used to reconstruct sea surface temperature (SST) and more recently seawater pH. Nevertheless, both reconstructed SST and pH depend on the preservation state of the skeleton, here made of aragonite; i.e., diagenetic processes and its related effects should be limited. In this study, we report on the impact of the presence of intra-skeletal calcite on the skeleton geochemistry of a live-collected Porites sp. The Porites skeleton preservation state was analyzed using X-ray diffraction and scanning electron microscopy. Sr/Ca, Mg/Ca, U/Ca, Ba/Ca, Li/Mg, and B/Ca ratios were measured at a monthly and yearly resolution using quadrupole ICP-MS and multi-collector ICP-MS. The δ11B signatures and the calcite percentages were acquired at a yearly timescale. The coral colony presents two parts, one with less than 3\% calcite (referred to as {\textquotedblleft}no-calcite{\textquotedblright} skeleton), the other one, corresponding to the skeleton formed during the last 4 years of growth, with calcite percentages varying from 13\% to 32\% (referred to as {\textquotedblleft}with calcite{\textquotedblright} skeleton). This intra-skeletal calcite replaces partly or completely numerous centers of calcification (COCs). All investigated geochemical tracers are significantly impacted by the presence of calcite. The reconstructed SST decreases by about 0.1 {\textdegree}C per calcite-percent as inferred from the Sr/Ca ratio. Such impact reaches up to 0.26 {\textdegree}C per calcite-percent for temperature deduced from the Li/Mg ratio. So, less than 5\% of such intra-skeletal calcite does not prevent SST reconstructions using Sr/Ca ratio, but the percentage and type of calcite have to be determined before fine SST interpretation. Seawater pH reconstruction inferred from boron isotopes drop by about -0.011 pH-unit per calcite-percent. Such sensitivity to calcite presence is particularly dramatic for fine paleo-pH reconstructions. Here we suggest that after being brought to shallow waters following a cyclone, the studied coral was seasonally subjected to rainfall-related water freshening that could have mimicked a vadose environment like can be encountered on raised fossil coral reefs. Nevertheless, the process of calcite precipitation remains to be determined.},
	issn = {00167037},
	doi = {10.1016/j.gca.2015.12.020},
	url = {https://hal.archives-ouvertes.fr/hal-01253864v1},
	author = {Claire E. Lazareth and Soares-Pereira, Caroline and Douville, Eric and Brahmi, Chlo{\'e} and Dissard, Delphine and Le Cornec, Florence and Thil, Fran{\c c}ois and Gonzalez-Roubaud, C{\'e}cile and Caquineau, Sandrine and Cabioch, Guy}
}
@article {4368,
	title = {The invasive lionfish, Pterois volitans, used as a sentinel species to assess the organochlorine pollution by chlordecone in Guadeloupe (Lesser Antilles)},
	journal = {Marine Pollution Bulletin},
	volume = {107},
	year = {2016},
	pages = {102-106},
	type = {Journal Article},
	author = {Charlotte R. Dromard and Yolande Bouchon-Navaro and S{\'e}bastien Cordonnier and Claude Bouchon}
}
@article {4192,
	title = {Level of contamination by metallic trace elements and organic molecules in the seagrass beds of Guadeloupe island.},
	journal = {Environmental Science and Pollution Research},
	volume = {23},
	year = {2016},
	month = {2016},
	pages = {61-72},
	author = {Claude Bouchon and Lemoine, Soazig and Charlotte R. Dromard and Yolande Bouchon-Navaro}
}
@article {4396,
	title = {Meiofauna distribution in a mangrove forest exposed to shrimp farm effluents (New Caledonia)},
	journal = {Marine Environmental Research},
	volume = {119},
	year = {2016},
	pages = {100 - 113},
	abstract = {<p>Abstract Meiofauna abundance, biomass and individual size were studied in mangrove sediments subjected to shrimp farm effluents in New Caledonia. Two strategies were developed: i) meiofauna examination during the active (AP) and the non-active (NAP) periods of the farm in five mangrove stands characteristics of the mangrove zonation along this coastline, ii) meiofauna examination every two months during one year in the stand the closest to the pond (i.e. Avicennia marina). Thirteen taxonomic groups of meiofauna were identified, with nematodes and copepods being the most abundant ones. Meiofauna abundance and biomass increased from the land side to the sea side of the mangrove probably as a result of the increased length of tidal immersion. Abundance of total meiofauna was not significantly different before and after the rearing period. However, the effluent-receiving mangrove presented twice the meiofauna abundance and biomass than the control one. Among rare taxa, mites appeared extremely sensitive to this perturbation.</p>
},
	keywords = {New Caledonia},
	issn = {0141-1136},
	doi = {http://dx.doi.org/10.1016/j.marenvres.2016.05.028},
	url = {http://www.sciencedirect.com/science/article/pii/S0141113616300976},
	author = {L. Della Patrona and Cyril Marchand and C{\'e}dric Hubas and Nathalie Molnar and J. Deborde and Tarik Meziane}
}
@article {4213,
	title = {Metacommunity patterns across three Neotropical catchments with varying environmental harshness},
	journal = {Freshwater Biology},
	volume = {61},
	year = {2016},
	pages = {277-292},
	abstract = {<p>SUMMARY</p>

<p>1. Most metacommunity studies indicate that dispersal processes play a minor role compared with species sorting in explaining metacommunity organisation, in particular, in stream systems. However, the role of dispersal could vary with environmental harshness, as a result of frequent resetting of community succession by disturbances and the selection of generalist species from regional species pools. The importance of dispersal may also be mitigated by species dispersal ability.</p>

<p>2. In this study, we explored how species sorting and dispersal shaped invertebrate and fish metacommunities across streams in three tropical headwater catchments in Bolivia with contrasting environmental harshness, including flow regime, altitude and climate conditions. We addressed the hypothesis that the relative roles of dispersal and species sorting vary with environmental harshness: we predicted that the role of species sorting would predominate in benign conditions, whereas that of dispersal would predominate under moderate environmental harshness, and that neither dispersal nor species sorting would be relevant to explain metacommunities under high environmental harshness. We also hypothesised that the role of dispersal would decrease with increasing species dispersal ability.</p>

<p>3. Although there was little or no spatial autocorrelation of environmental distances (i.e. environmental differences) across the headwater catchments, community similarity correlated more strongly with environmental than spatial distances among headwater sites that had low environmental harshness, but the opposite pattern was observed among sites with moderate environmental harshness. Under high environmental harshness, neither environmental harshness nor spatial distances between sites explained community similarity.<br />
4. Under moderate environmental harshness, the correlation between community similarity and spatial distances was the strongest for moderate dispersers of both invertebrates and fish. Yet, in contrast to fish, strongly dispersing invertebrate taxa were spatial structured, suggesting that they were not able to reach all sites as predicted.<br />
5. Our results suggest the role of dispersal might be underestimated, notably in systems prone to environmental harshness. Better proxies for dispersal, along with the use of spatial distances to account for resistance to animal movements in river systems and that account for flow magnitude and directionality, slope, riparian vegetation, wind and streambed roughness, may promote a more realistic integration of dispersal processes in basic and applied metacommunity research.</p>
},
	doi = {doi:10.1111/fwb.12702},
	author = {T. Datry and A.S. Melo and N. Moya and J. Zubieta and E. De La Barra and Thierry Oberdorff}
}
@article {4287,
	title = {Modelling spatial distribution of Patagonian toothfish through life-stages and sex and its implications for the fishery on the Kerguelen Plateau},
	journal = {Progress in Oceanography},
	volume = {141},
	year = {2016},
	pages = {81 - 95},
	abstract = {<p>Abstract Size and sex specific habitat preferences are common in animal populations and can have important implications for sound spatial management of harvested species. Patagonian toothfish (Dissostichus eleginoides) is a commercially exploited fish species characterised by its longevity (\&gt;50 yo) and its extremely broad distribution in depths ranging from 10 m to 2500 m on most of the Plateaux, banks and seamounts of the Southern Ocean. As many bentho-pelagic fish species, Patagonian toothfish exhibits sexual dimorphism and ontogenetic habitat shift towards deeper waters as they grow. In this study, we modelled the spatial structure of Patagonian toothfish population (median total length and sex composition) in a data-rich area, the Kerguelen Plateau (Southern Indian Ocean), to better understand the ecological drivers of their distributional patterns and inform current and future fishery management strategies. We applied spatially-explicit statistical models to quantify and predict the effects of the complex topography of the Kerguelen Plateau in structuring the spatial distribution of Patagonian toothfish total length and sex ratio, while controlling for gear selectivity and season. Model predictions showed that juvenile toothfish live in shallow regions (shelf and banks) and move downward progressively up to 600 m while they grow. Between 600 m and 1200 m, the downward movement stops and fish settle at their preferred depths. While in this depth range, fish are \~{}75 cm long and most vulnerable to fisheries. As they approach maturity large fish move downward to deep-sea habitats (from 1200 m to \&gt;2300 m) and head towards the spawning grounds on the western side of the plateau and around Skiff Bank. Importantly, the sex ratio was not evenly distributed across the Plateau; prediction maps revealed a higher proportion of females in the South whereas a strong male-bias sex ratio (70\%) occurred in the North-West. Large-scale prediction maps derived from our models assisted in developing hypotheses regarding ecological drivers of Patagonian toothfish habitat-use and movement across different life stages and sex. Such hypotheses are crucial to inform management strategies of this multijurisdictional fishery (France and Australia) at the spatial and temporal scales over which natural processes and fishery extend.</p>
},
	issn = {0079-6611},
	doi = {10.1016/j.pocean.2015.12.003},
	url = {http://www.sciencedirect.com/science/article/pii/S007966111530015X},
	author = {Clara P{\'e}ron and Dirk C. Welsford and Philippe Ziegler and Timothy D. Lamb and Nicolas Gasco and Charlotte Chazeau and Romain Sin{\`e}gre and Guy Duhamel}
}
@article {8574,
	title = {Network Analysis Shows Asymmetrical Flows within a Bird Metapopulation},
	journal = {PLOS ONE},
	volume = {11},
	year = {2016},
	month = {Apr-11-2018},
	pages = {e0166701},
	doi = {10.1371/journal.pone.016670110.1371/journal.pone.0166701.g00110.1371/journal.pone.0166701.t00110.1371/journal.pone.0166701.t00210.1371/journal.pone.0166701.s001},
	url = {https://dx.plos.org/10.1371/journal.pone.0166701},
	author = {Rojas, Emilio R. and Sueur, C{\'e}dric and Henry, Pierre-Yves and Doligez, Blandine and Wey, G{\'e}rard and Dehorter, Olivier and Massemin, Sylvie and Chevallier, Damien and Clauss, Thierry and Dugu{\'e} Hubert and Merle, Christian},
	editor = {Margalida, Antoni}
}
@article {4597,
	title = {Parental influence in relation to growth and survival in larval families of Doncella Pseudoplatystoma punctifer},
	journal = {Folia Amaz{\'o}nica},
	volume = {25},
	year = {2016},
	pages = {77-82},
	author = {Castro-Ruiz, D and Baras, Etienne and Fern{\'a}ndez, C and Sophie Qu{\'e}rouil and Chota-Macuyama, Werner and F. Duponchelle and Renno, J-F and Darias, Maria and Garc{\'\i}a-D{\'a}vila, C and Jesus Nu{\~n}ez-Rodriguez}
}
@article {4372,
	title = {Pollen limitation may be a common Allee effect in marine  hydrophilous plants: implications for decline and recovery  in seagrasses},
	journal = {Oecologia},
	year = {2016},
	pages = {1-15},
	doi = {10.1007/s00442-016-3665-7},
	author = {B.I. Van Tussenbroek and L.M. Soissons and T.J. Bouma and R. Asmus and I. Auby and F.G. Brun and P.G. Cardoso and Nicolas Desroy and J{\'e}r{\^o}me Fournier and F. Ganthy and J.M. Garmendia and Laurent Godet and T.F. Grilo and P. Kadel and B. Ondiviela and G. Peralta and M. Recio and M. Valle and T. Van der Heide and van Katwijk, M M}
}
@article {4677,
	title = {Present-day African analogue of a pre-European Amazonian floodplain fishery shows convergence in cultural niche construction},
	journal = {Proceedings of the National Academy of Sciences},
	year = {2016},
	abstract = {<p>Erickson [Erickson CL (2000) Nature 408 (6809):190{\textendash}193] interpreted features in seasonal floodplains in Bolivia{\textquoteright}s Beni savannas as vestiges of pre-European earthen fish weirs, postulating that they supported a productive, sustainable fishery that warranted cooperation in the construction and maintenance of perennial structures. His inferences were bold, because no close ethnographic analogues were known. A similar present-day Zambian fishery, documented here, appears strikingly convergent. The Zambian fishery supports Erickson{\textquoteright}s key inferences about the pre-European fishery: It allows sustained high harvest levels; weir construction and operation require cooperation; and weirs are inherited across generations. However, our comparison suggests that the pre-European system may not have entailed intensive management, as Erickson postulated. The Zambian fishery{\textquoteright}s sustainability is based on exploiting an assemblage dominated by species with life histories combining high fecundity, multiple reproductive cycles, and seasonal use of floodplains. As water rises, adults migrate from permanent watercourses into floodplains, through gaps in weirs, to feed and spawn. Juveniles grow and then migrate back to dry-season refuges as water falls. At that moment fishermen set traps in the gaps, harvesting large numbers of fish, mostly juveniles. In nature, most juveniles die during the first dry season, so that their harvest just before migration has limited impact on future populations, facilitating sustainability and the adoption of a fishery based on inherited perennial structures. South American floodplain fishes with similar life histories were the likely targets of the pre-European fishery. Convergence in floodplain fish strategies in these two regions in turn drove convergence in cultural niche construction.</p>
},
	doi = {10.1073/pnas.1613169114},
	url = {http://www.pnas.org/content/early/2016/12/09/1613169114.abstract},
	author = {McKey, Doyle B. and Dur{\'e}cu, M{\'e}lisse and Marc Pouilly and Bearez, Philippe and Ovando, Alex and Kalebe, Mashuta and Carl F. Huchzermeyer}
}
@article {4365,
	title = {Revisiting the ichthyodiversity of Java and Bali through DNA barcodes: taxonomic coverage, identification accuracy, cryptic diversity and identification of exotic species.},
	journal = {Mol Ecol Resour},
	year = {2016},
	month = {2016 Mar 22},
	abstract = {<p>Among the 899 species of freshwater fishes reported from Sundaland biodiversity hotspot, nearly 50\% are endemics. The functional integrity of aquatic ecosystems is currently jeopardized by human activities and landscape conversion led to the decline of fish populations in several part of Sundaland, particularly in Java. The inventory of the Javanese ichthyofauna has been discontinuous and the taxonomic knowledge is scattered in the literature. The present study provides a DNA barcode reference library for the inland fishes of Java and Bali with the aim to streamline the inventory of fishes in this part of Sundaland. Owing to the lack of available checklist for estimating the taxonomic coverage of the present study, a checklist was compiled based on online catalogs. A total of 95 sites were visited and a library including 1,046 DNA barcodes for 159 species was assembled. Nearest neighbor distance was 28-fold higher than maximum intra-specific distance on average and a DNA barcoding gap was observed. The list of species with DNA barcodes displayed large discrepancies with the checklist compiled here as only 36\% (i.e. 77 species) and 60\% (i.e.24 species) of the known species were sampled in Java and Bali, respectively. This result was contrasted by a high number of new occurrences and the ceiling of the accumulation curves for both species and genera. These results highlight the poor taxonomic knowledge of this ichthyofauna and the apparent discrepancy between present and historical occurrence data is to be attributed to species extirpations, synonymy and misidentifications in previous studies. This article is protected by copyright. All rights reserved.</p>
},
	issn = {1755-0998},
	doi = {10.1111/1755-0998.12528},
	author = {Dahruddin, Hadi and Hutama, Aditya and Fr{\'e}d{\'e}ric Busson and Sauri, Sopian and Hanner, Robert and Philippe Keith and Hadiaty, Renny and Hubert, Nicolas}
}
@article {4176,
	title = {Spatial and seasonal contrasts of sedimentary organic matter in floodplain lakes of the central Amazon basin},
	journal = {Biogeosciences},
	volume = {13},
	year = {2016},
	type = {original},
	abstract = {<p><br />
In this study, we investigated the seasonal and spatial pattern of sedimentary organic matter (SOM) in five floodplain lakes of the central Amazon basin (Cabaliana, Janauaca, Cana{\c c}ari, Mirituba and Curuai) which have different morphologies, hydrodynamics and vegetation coverages. Surface sediments were collected in four hydrological seasons: low water (LW), rising water (RW), high water (HW) and falling water (FW) in 2009 and 2010. We inves-tigated commonly used bulk geochemical tracers such as the C/N ratio and the stable isotopic composition of organic carbon (13Cor). These results were compared with lignin phenol parameters as an indicator of vascular plant detritus and branched glycerol dialkyl glycerol tetraethers (brGDGTs) to trace the input of soil organic matter (OM) from land to the aquatic settings. We also applied the crenarchaeol as an indi- cator of aquatic (rivers and lakes) OM. Our data showed that during the RW and FW seasons, the surface sediments were enriched in lignin and brGDGTs in comparison to other seasons. Our study also indicated that floodplain lake sediments primarily consisted of allochthonous, C3 plant-derived OM. However, a downstream increase in C4 macrophyte-derivedOM contribution was observed along the gradient of increas-ing open waters {\textendash} i.e., from upstream to downstream. Accordingly, we attribute the temporal and spatial difference in SOM composition to the hydrological dynamics between the floodplain lakes and the surrounding flooded forests.<br />
\&nbsp;</p>
},
	author = {Sobrinho, R L and Bernardes, Marcelo C and Gwena{\"e}l Abril and Kim, J-H and Zell, C and Jean-Michel Mortillaro and Tarik Meziane and Moreira-Turcq, P and J S Sinningh Damst{\'e}}
}
@article {3506,
	title = {Sub-chronic exposure to fluoxetine in juvenile oysters (Crassostrea gigas): uptake and biological effects.},
	journal = {Environ Sci Pollut Res Int},
	year = {2016},
	month = {2014 Oct 15},
	abstract = {<p>The bioconcentration potential of fluoxetine (FLX) and its biological effects were investigated in juvenile Pacific oyster exposed for 28\&nbsp;days to environmentally relevant concentrations of FLX (1\&nbsp;ng L(-1), 100\&nbsp;ng L(-1) and up to 10\&nbsp;μg\&nbsp;L(-1)). FLX bioaccumulated in oyster flesh resulting in 28-day bioconcentration factors greater than 2,000 and 10,000 by referring to wet and dry weights, respectively. Nevertheless, FLX did not induce oyster mortality, delayed gametogenesis, or lead to adverse histopathological alterations. At the two highest concentrations, despite non-optimal trophic conditions, FLX stimulated shell growth but only in a transient manner, suggesting a role of serotonin in the regulation of feeding and metabolism in bivalves. Those high concentrations seemed to drive bell-shaped responses of catalase and glutathione S-transferase activities throughout the exposure period, which may indicate the activation of antioxidant enzyme synthesis and then an enhanced catabolic rate or direct inhibition of those enzymes. However, no clear oxidative stress was detected because no strong differences in thiobarbituric acid-reactive substance (TBARS) content (i.e. lipid peroxidation) were observed between oyster groups, suggesting that cellular defence mechanisms were effective. These results demonstrate the importance of considering additional biomarkers of oxidative stress to obtain a comprehensive overview of the FLX-induced changes in marine bivalves exposed under realistic conditions. Considering the battery of biomarkers used, FLX appears to induce little or no effects on oyster physiology even at a concentration of 10\&nbsp;μg\&nbsp;L(-1). These results do not confirm the lowest observed effect concentration (LOEC) values reported by some authors in other mollusc species.</p>
},
	issn = {1614-7499},
	doi = {10.1007/s11356-014-3702-1},
	author = {Di Poi, C and L Evariste and S{\'e}guin, Alexis and Mottier, A and Pedelucq, Julie and Jean-Marc Lebel and Antoine Serpentini and Budzinski, H{\'e}l{\`e}ne and Katherine Costil}
}
@article {8581,
	title = {Tele-anaesthesia{\textquoteright}: a new approach to wild bird capture under field conditions},
	journal = {Ringing \& Migration},
	volume = {31},
	year = {2016},
	month = {Jan-06-2017},
	pages = {77 - 80},
	issn = {0307-8698},
	doi = {10.1080/03078698.2016.1190549},
	url = {http://www.tandfonline.com/doi/full/10.1080/03078698.2016.1190549},
	author = {Chevallier, Damien and Dehorter, Olivier and Brossard, Christian and Larvol, Jean-Pierre}
}
@article {4508,
	title = {Three nuclear and two membrane estrogen receptors in basal teleosts, Anguilla sp.: Identification, evolutionary history and differential expression regulation.},
	journal = {Gen Comp Endocrinol},
	volume = {235},
	year = {2016},
	month = {2016 Sep 1},
	pages = {177-91},
	abstract = {<p>Estrogens interact with classical intracellular nuclear receptors (ESR), and with G-coupled membrane receptors (GPER). In the eel, we identified three nuclear (ESR1, ESR2a, ESR2b) and two membrane (GPERa, GPERb) estrogen receptors. Duplicated ESR2 and GPER were also retrieved in most extant teleosts. Phylogeny and synteny analyses suggest that they result from teleost whole genome duplication (3R). In contrast to conserved 3R-duplicated ESR2 and GPER, one of 3R-duplicated ESR1 has been lost shortly after teleost emergence. Quantitative PCRs revealed that the five receptors are all widely expressed in the eel, but with differential patterns of tissue expression and regulation. ESR1 only is consistently up-regulated in vivo in female eel BPG-liver axis during induced sexual maturation, and also up-regulated in vitro by estradiol in eel hepatocyte primary cultures. This first comparative study of the five teleost estradiol receptors provides bases for future investigations on differential roles that may have contributed to the conservation of multiple estrogen receptors.</p>
},
	issn = {1095-6840},
	doi = {10.1016/j.ygcen.2015.11.021},
	author = {Anne-Gaelle Lafont and Karine Rousseau and Tomkiewicz, Jonna and Sylvie Dufour}
}
@article {4280,
	title = {Trans-Amazonian natal homing in giant catfish},
	journal = {Journal of Applied Ecology},
	volume = {53},
	year = {2016},
	pages = {1511-1520},
	abstract = {<p>1.Knowledge of fish migration is a prerequisite to sustainable fisheries management and preservation, especially in large international river basins. In particular, understanding whether a migratory lifestyle is compulsory or facultative, and whether adults home to their natal geographic area is paramount to fully appraise disruptions of longitudinal connectivity resulting from damming.2.In the Amazon, the large migratory catfishes of the Brachyplatystoma genus are apex predators of considerable interest for fisheries. They are believed to use the entire length of the basin to perform their life cycle, with hypothesized homing behaviours. Here we tested these hypotheses, using the emblematic B. rousseauxii as a model species.3.We sampled adults close to major breeding areas in the Amazon basin (upper Madeira and upper Amazonas) and assessed their lifetime movements by measuring variations in 87Sr/86Sr along transverse sections of their otoliths (ear stones) using laser ablation multicollector mass spectrometry (LA-MC-ICPMS).4.We demonstrate that larvae migrate downstream from the Andean piedmont to the lower Amazon, where they grow over a protracted period before migrating upstream as adults. Contrary to prevailing inferences, not all fish spend their nursery stages in the Amazon estuary. By contrast, the passage in the lower or central Amazon seems an obligate part of the life cycle. We further evidence that most adults home to their natal geographic area within the Madeira sub-basin. Such long-distance natal homing is exceptional in purely freshwater fishes.5.Synthesis and applications. By using otolith microchemistry, we were able to demonstrate a seemingly compulsory basin-wide migratory life cycle of large Amazonian catfishes. This makes them the organisms performing the longest migrations (\&gt;8000 km) in fresh waters. This exceptional life history is already jeopardized by two dams recently built in the Madeira River, which block a major migration route and access to a substantial part of their spawning grounds. Major impacts can be anticipated from the current and forthcoming hydroelectric development in the Amazon basin, not only on the populations and fisheries of this apex predator, but also on Amazonian food webs through trophic cascades.This article is protected by copyright. All rights reserved.</p>
},
	keywords = {87Sr/86Sr ratios, Amazon, anthropogenic activities, Brachyplatystoma spp, freshwater fish, giant catfish, hydroelectric dams, Migration, otoliths},
	issn = {1365-2664},
	doi = {10.1111/1365-2664.12665},
	url = {http://dx.doi.org/10.1111/1365-2664.12665},
	author = {Fabrice Duponchelle and Marc Pouilly and Pecheyran, Christophe and Hauser, Marilia and Renno, Jean-Francois and Panfili, Jacques and Darnaude, Audrey M. and Garc{\'\i}a-Vasquez, Aurea and Carvajal-Vallejos, Fernando and Carmen Garc{\'\i}a-D{\'a}vila and Doria, Carolina and B{\'e}rail, Sylvain and Donard, Ariane and Sondag, Francis and Santos, Roberto V. and Jesus Nu{\~n}ez-Rodriguez and Point, David and Labonne, Maylis and Baras, Etienne}
}
@article {4448,
	title = {Unexpectedmovements of male Bluethroats Luscinia svecica namnetum during the breeding period},
	journal = {Alauda},
	volume = {84},
	year = {2016},
	pages = {195-202},
	abstract = {<p>During a radiotracking survey on 61 different males of Bluethroat Luscinia svecica namnetum from 2012 to 2015 in three different sites, we found that 8 males joined remote areas, at 300 to 900meters fromtheir regular territory and home range. Thesemovements occurred at dawn and dusk, but also at day. Such movements are not recorded in the literature and we propose four different hypotheses to explain them: the existence of {\textquotedblleft}hidden leks{\textquotedblright}, a male poly-territoriality, the look for food or for a shelter from predators.</p>
},
	author = {Cl{\'e}ment Harmange and Laurent Godet and Matthieu Marquet and Julie Dietrich and Sarah Monnet and Elisa Gr{\'e}goire and Marie-Christine Eybert and J{\'e}r{\^o}me Fournier}
}
@article {4215,
	title = {Which factors determine the altitudinal distribution of tropical Andean riverine fishes?},
	journal = {Revista de Biologia Tropical},
	volume = {64},
	year = {2016},
	month = {03/2016},
	pages = {173-192},
	abstract = {<p>Abstract: Which factors determine the altitudinal distribution of tropical Andean riverine fishes?</p>

<p>Altitudinal gradients represent an appropriate system to assess whether there is a relationship between richness patterns, environmental variables, and the ecological processes that determine the species type and number inhabiting a given area. In mountain streams freshwater fishes, the most prevalent relationship is a monotonic decrease in species richness with elevation. The objective of this study was to evaluate four hypotheses that can explain the negative relationship between local fish species richness and altitude, 1) the hypothesis of decreasing energy availability, 2) the hypothesis of increasing climate severity, 3) the hypothesis of habitat diversity, and 4) the hypothesis of isolation by physical severity of the environment. Fish and macro-invertebrates were col- lected following standard methods from 83 sites (between 200-4 000 meters) of two river basins in the Bolivian Amazon. The first hypothesis was tested by analyzing relationships between the density of macro-invertebrates, the richness of invertivorous fish species and altitude; while the second and third hypotheses were assessed by a multiple regression analysis (GLM) between fish species richness and several local and regional factors. Besides, assemblage dissimilarity between sites along the altitudinal gradient was analyzed using βsim and βness indices. Fish richness decreases linearly with increasing altitude. The density of macro-invertebrates tends to increase at higher altitudes, contrary to invertivorous fish species richness, suggesting that energy availability is not a limiting factor for fish species colonization. The GLM explained 86 \% of the variation in fish species richness, with a significant contribution of water temperature, maximum slope in the river mainstem, and stream width. There is a higher species turnover (βsim) between sites at low elevation. Inversely, βness shows higher values in the upper parts, corresponding to change in assemblages mainly due to species loss. Taken together, these results suggest that climatic and physical severities create strong barriers to colonization, further explaining the decrease in fish richness along the altitudinal gradient.</p>
},
	issn = {ISSN-0034-7744},
	author = {E. De La Barra and J. Zubieta and G. Aguilera and M. Maldonado and Marc Pouilly and Thierry Oberdorff}
}
@book {4150,
	title = {4th RIIA International Conference : Book of abstracts.},
	year = {2015},
	pages = {84 p.},
	publisher = {Universidad Mayor de San Sim{\'o}n; Institut de Recherche pour le D{\'e}veloppement},
	organization = {Universidad Mayor de San Sim{\'o}n; Institut de Recherche pour le D{\'e}veloppement},
	address = {Cochabamba; Marseille},
	author = {Darias, Maria and Rejas, Danny}
}
@article {5815,
	title = {{Anthropogenic impact on macrobenthic communities and consequences for shorebirds in Northern France: A complex response}},
	journal = {Biological Conservation},
	volume = {184},
	year = {2015},
	abstract = {<p>{\textcopyright} 2015 Elsevier Ltd. Shorebird populations are declining worldwide due to the combined effect of climate change and anthropogenic forcing, the ongoing coastal urbanisation amplifying the alteration of their habitat in both rate and magnitude. By focusing on a highly anthropogenically-influenced region in Northern France, we studied the impact of a seawall construction on wintering shorebird populations through potential alterations in the abundance and availability of their food resources. We concurrently investigated changes in the spatial distribution of muddy-sand beach macrobenthic communities between two periods of contrasting anthropogenic impacts and examined year-to-year trends of wintering shorebirds. Our study reveals that the seawall construction led to a major spatial reorganisation of the macrobenthic communities with a drastic reduction of the muddy-sand community. However, no relation between macrobenthic changes and shorebird abundances was detected. Fluctuations in shorebird abundances appeared to be congruent with flyway population trends. This result suggests that the response of shorebirds to human-induced perturbations is much more complex than expected. While an assessment of potential disturbances induced by coastal engineering constructions is needed, the pathways by which alterations could propagate through an ecosystem are not linear and as such difficult to determine. Ecosystems appear as complex adaptive systems in which macroscopic dynamics emerge from non-linear interactions at entangled smaller/larger scales. Our results confirm that an in-depth knowledge of the local, regional and global factors that influence trends of shorebirds and their habitat use is essential for accurate and effective management and conservation strategies.</p>
},
	keywords = {Anthropogenic impact, Coastal conservation, Complexity, Macrobenthic communities, Shorebirds},
	issn = {00063207},
	doi = {10.1016/j.biocon.2015.02.016},
	author = {C{\'e}line Rolet and Nicolas Spilmont and Dominique Davoult and Goberville, Eric and Christophe Luczak}
}
@proceedings {3545,
	title = {Artificial reef: Multiscale monitoring of colonization and primary production - R{\'e}cif artificiel: mise en place d{\textquoteright}un suivi de la colonisation a plusieurs {\'e}chelles},
	volume = {1},
	year = {2015},
	month = {01/2015},
	pages = {103-110},
	edition = {M. Boutouil \& S. Leboulanger},
	address = {ESITC Caen},
	isbn = {978-2-95517664-0-5},
	author = {Pascal Claquin and Leroy, Fanny and Anne-Marie Rusig and Isabelle Mussio and Eric Feunteun and Foveau, Aur{\'e}lie and Jean-Claude Dauvin and R{\'e}gis Gallon and Lebrun, J-L and Lestarquit, Mabel and Francis Orvain and Anne-Sophie Martinez and Desoche, E and Napol{\'e}on, Camille and Roussel, D{\'e}borha and Boutoil, Mohamed}
}
@article {3791,
	title = {Assessment of the contamination of marine fauna by chlordecone in Guadeloupe and Martinique (Lesser Antilles)},
	journal = {Environmental Science and Pollution Research},
	year = {2015},
	author = {Charlotte R. Dromard and Bodiguel, xavier and Lemoine, Soazig and Yolande Bouchon-Navaro and Reynal, Lionel and Thouard, Emmanuel and Claude Bouchon}
}
@article {6824,
	title = {Behavioural study of two hydrothermal crustacean decapods: Mirocaris fortunata and Segonzacia mesatlantica, from the Lucky Strike vent field (Mid-Atlantic Ridge)},
	journal = {Deep Sea Research Part II: Topical Studies in Oceanography},
	volume = {121},
	year = {2015},
	pages = {146 - 158},
	abstract = {Identifying the factors driving community dynamics in hydrothermal vent communities, and in particular biological interactions, is challenged by our ability to make direct observations and the difficulty to conduct experiments in those remote ecosystems. As a result, we have very limited knowledge on species׳ behaviour and interactions in these communities and how they in turn influence community dynamics. Interactions such as competition or predation significantly affect community structure in vent communities, and video time-series have successfully been used to gain insights in biological interactions and species behaviour, including responses to short-term changes in temperature or feeding strategies. In this study, we combined in situ and ex situ approaches to characterise the behaviour and interactions among two key species encountered along the Mid-Atlantic Ridge (MAR): the shrimp Mirocaris fortunata and the crab Segonzacia mesatlantica. In situ, species small-scale distribution, interactions and behaviour were studied using the TEMPO observatory module deployed on the seafloor at the base of the active Eiffel Tower edifice in the Lucky Strike vent field as part of the EMSO-A{\c c}ores MoMAR observatory. TEMPO sampled 2min of video four times a day from July 2011 to April 2012. One week of observations per month was used for {\textquoteleft}long-term{\textquoteright} variations, and a full video data set was analysed for January 2012. In addition, observations of crab and shrimp individuals maintained for the first time under controlled conditions in atmospheric pressure (classic tank) and pressurised (AbyssBox) aquaria allowed better characterisation and description of the different types of behaviour and interactions observed in nature. While the identified in situ spatial distribution pattern was stable over the nine months, both species displayed a significant preference for mussel bed and anhydrite substrata, and preferentially occupied the area located directly in the fluid flow axis. The aggregation behaviour of M. fortunata resulted in the occurrence of numerous intraspecific interactions mainly involving the use of two pairs of sensory organs (antenna/antennule) and fleeing behaviours when in contact or close to individuals of S. mesatlantica. The higher level of passiveness observed in the ex situ artificial environment compared to the in situ environment was attributed to the lack of stimulation related to low densities of congeners and/or of sympatric species compared to the natural environment and the absence of continuous food supply, as both species displayed a significant higher level of activity during feeding time. This result emphasises the role of food supply as a driver of species distribution and behaviour. Direct in situ observations using cameras deployed on deep-sea observatories, combined with experimental set-up in pressurised aquaria, will help investigators understand the factors influencing community dynamics and species biology at vents as well as their underlying mechanisms.},
	keywords = {32{\textdegree}16.3'W, 37{\textdegree}17'N, AbyssBox, Biological interactions, Deep-sea observatory, Eiffel Tower edifice, Experimental research, Feeding behaviour, Lucky Strike, Mid-Atlantic Ridge, Time series, Video imagery},
	issn = {0967-0645},
	doi = {https://doi.org/10.1016/j.dsr2.2015.04.008},
	url = {http://www.sciencedirect.com/science/article/pii/S0967064515001113},
	author = {Matabos Marjolaine and Cuvelier Daphn{\'e} and Brouard Johan and Bruce Shillito and Juliette Ravaux and Magali Zbinden and Barthelemy Dominique and Sarradin, Pierre-Marie and Sarrazin, Jozee}
}
@article {3325,
	title = {Biogenic reefs affect multiple components of intertidal soft-bottom benthic assemblages: the Lanice conchilega case study},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {152},
	year = {2015},
	month = {01/2015},
	pages = {44-55},
	abstract = {<p>Biogenic reefs composed of the tube-building polychaete Lanice conchilega are important from a conservation point of view because they noticeably increase the biodiversity in otherwise species poor<br />
environments. However, up to now, little or no attention has been paid to the intertidal epi- and hyperbenthic communities associated with the reefs. Therefore, this is the first study which focuses on<br />
the effect of L. conchilega reefs on the entire bentho-pelagic community at two different locations. Environmental variables were measured and macro-, epi- and hyperbenthic communities were sampled<br />
within a L. conchilega reef and a control area at two locations in France: the bay of the Mont Saint-Michel (BMSM) and Boulogne-sur-Mer (Boulogne). The effect of the reef presence on the benthic community<br />
was studied with a 3-factor (Reef, Location and Period) Permanova. In addition, the relationship between the benthic community and the environmental variables was investigated using Distance-based linear<br />
models (DistLM). Most collected organisms were sampled in the reef area (macrobenthos: 91\%, epibenthos: 81\% and hyperbenthos: 78.5\%) indicating that, independent of the location, the L. conchilega<br />
reefs positively affect all three associated benthic communities. However, the extent of the effect seems to be most pronounced for the macrobenthos and less distinct in case of the hyperbenthos. The macro-,<br />
and epibenthos are mainly structured by biotic variables (L. conchilega density and macrobenthic food availability respectively), while the hyperbenthos is rather structured by environmental variables. In<br />
general, L. conchilega reefs do not only affect abundances and diversity but they substantially steer the structure of the intertidal benthic sandy beach ecosystem.</p>
},
	keywords = {beaches, benthos, biogenic reefs, community composition, Lanice conchilega, tidal flats},
	doi = {doi:10.1016/j.ecss.2014.11.002},
	author = {De Smet, Bart and D{\textquoteright}Hondt, An Sophie and Pieterjan, Verhelst and J{\'e}r{\^o}me Fournier and Laurent Godet and Nicolas Desroy and Rabaut, Marijn and Magda, Vincx and Jan, Vanaverbeke}
}
@article {4165,
	title = {Biogeographical distribution of Rimicaris exoculata resident gut epibiont communities along the Mid-Atlantic Ridge hydrothermal vent sites.},
	journal = {FEMS Microbiol Ecol},
	volume = {91},
	year = {2015},
	month = {2015 Oct},
	abstract = {<p>Rimicaris exoculata is a deep-sea hydrothermal vent shrimp whose enlarged gill chamber houses a complex trophic epibiotic community. Its gut harbours an autochthonous and distinct microbial community. This species dominates hydrothermal ecosystem megafauna along the Mid-Atlantic Ridge, regardless of contrasting geochemical conditions prevailing in them. Here, the resident gut epibiont community at four contrasted hydrothermal vent sites (Rainbow, TAG, Logatchev and Ashadze) was analysed and compiled with previous data to evaluate the possible influence of site location, using 16S rRNA surveys and microscopic observations (transmission electron microscopy, scanning electron microscopy and fluorescence in situ hybridization analyses). Filamentous epibionts inserted between the epithelial cell microvilli were observed on all examined samples. Results confirmed resident gut community affiliation to Deferribacteres, Mollicutes, Epsilonproteobacteria and to a lesser extent Gammaproteobacteria lineages. Still a single Deferribacteres phylotype was retrieved at all sites. Four Mollicutes-related operational taxonomic units were distinguished, one being only identified on Rainbow specimens. The topology of ribotype median-joining networks illustrated a community diversification possibly following demographic expansions, suggesting a more ancient evolutionary history and/or a larger effective population size at Rainbow. Finally, the gill chamber community distribution was also analysed through ribotype networks based on sequences from R. exoculata collected at the Rainbow, Snake Pit, TAG, Logatchev and Ashadze sites. Results allow the refining of hypotheses on the epibiont role and transmission pathways.</p>
},
	issn = {1574-6941},
	doi = {10.1093/femsec/fiv101},
	author = {Durand, Lucile and Roumagnac, Marie and Cueff-Gauchard, Val{\'e}rie and Jan, Cyrielle and Guri, Mathieu and Tessier, Claire and Haond, Marine and Crassous, Philippe and Magali Zbinden and Arnaud-Haond, Sophie and Cambon-Bonavita, Marie-Anne}
}
@article {3448,
	title = {Bushmeat genetics: setting up a reference framework for the DNA typing of African forest bushmeat.},
	journal = {Mol Ecol Resour},
	volume = {15},
	year = {2015},
	month = {2014 Sep 26},
	pages = {633-651},
	abstract = {<p>The bushmeat trade in tropical Africa represents illegal, unsustainable off-takes of millions of tons of wild game - mostly mammals - per year. We sequenced four mitochondrial gene fragments (cyt b, COI, 12S, 16S) in \&gt;300 bushmeat items representing nine mammalian orders and 59 morphological species from five western and central African countries (Guinea, Ghana, Nigeria, Cameroon and Equatorial Guinea). Our objectives were to assess the efficiency of cross-species PCR amplification and to evaluate the usefulness of our multilocus approach for reliable bushmeat species identification. We provide a straightforward amplification protocol using a single {\textquoteright}universal{\textquoteright} primer pair per gene that generally yielded \&gt;90\% PCR success rates across orders and was robust to different types of meat preprocessing and DNA extraction protocols. For taxonomic identification, we set up a decision pipeline combining similarity- and tree-based approaches with an assessment of taxonomic expertise and coverage of the GENBANK database. Our multilocus approach permitted us to: (i) adjust for existing taxonomic gaps in GENBANK databases, (ii) assign to the species level 67\% of the morphological species hypotheses and (iii) successfully identify samples with uncertain taxonomic attribution (preprocessed carcasses and cryptic lineages). High levels of genetic polymorphism across genes and taxa, together with the excellent resolution observed among species-level clusters (neighbour-joining trees and Klee diagrams) advocate the usefulness of our markers for bushmeat DNA typing. We formalize our DNA typing decision pipeline through an expert-curated query database - DNAbushmeat - that shall permit the automated identification of African forest bushmeat items.</p>
},
	issn = {1755-0998},
	doi = {10.1111/1755-0998.12334},
	author = {Gaubert, Philippe and Njiokou, Flobert and Olayemi, Ayodeji and Pagani, Paolo and Dufour, Sylvain and Danquah, Emmanuel and Nutsuakor, Mac Elikem K and Ngua, Gabriel and Missoup, Alain-Didier and Pablo Tedesco and Dernat, R{\'e}my and Antunes, Agostinho}
}
@article {6815,
	title = {Calibration of seawater temperature and δ18Oseawater signals in Tridacna maxima{\textquoteright}s δ18Oshell record based on in situ data},
	journal = {Coral Reefs},
	volume = {34},
	year = {2015},
	month = {Jan-06-2015},
	pages = {437 - 450},
	issn = {0722-4028},
	doi = {10.1007/s00338-014-1245-z},
	url = {http://link.springer.com/10.1007/s00338-014-1245-z},
	author = {Duprey, N. and Claire E. Lazareth and Dupouy, C. and Butscher, J. and Farman, R. and Maes, C. and Cabioch, G.}
}
@proceedings {3549,
	title = {Chemical interaction between epilitic microphytobenthic biofilm and larval development of the sea urchin Paracentrotus lividus},
	volume = {1},
	year = {2015},
	month = {01/2015},
	pages = {239-247},
	edition = {M. Boutouil \& S. Leboulanger},
	address = {ESITC Caen},
	isbn = {978-2-95517664-0-5},
	author = {Francis Orvain and Anne-Sophie Martinez and Desoche, E and Pascal Claquin}
}
@proceedings {3547,
	title = {Colonisation {\`a} court terme par le benthos sur un {\'e}co-r{\'e}cif artificiel},
	volume = {1},
	year = {2015},
	month = {01/2015},
	pages = {119-126},
	edition = {M. Boutouil \& S. Leboulanger},
	address = {ESITC Caen},
	isbn = {978-2-95517664-0-5},
	author = {Foveau, Aur{\'e}lie and Jean-Claude Dauvin and Anne-Marie Rusig and Isabelle Mussio and Pascal Claquin}
}
@article {3700,
	title = {Colonization of plant substrates at hydrothermal vents and cold seeps in the northeast Atlantic and Mediterranean and occurrence of symbiont-related bacteria.},
	journal = {Front Microbiol},
	volume = {6},
	year = {2015},
	month = {2015},
	pages = {162},
	abstract = {<p>Reducing conditions with elevated sulfide and methane concentrations in ecosystems such as hydrothermal vents, cold seeps or organic falls, are suitable for chemosynthetic primary production. Understanding processes driving bacterial diversity, colonization and dispersal is of prime importance for deep-sea microbial ecology. This study provides a detailed characterization of bacterial assemblages colonizing plant-derived substrates using a standardized approach over a geographic area spanning the North-East Atlantic and Mediterranean. Wood and alfalfa substrates in colonization devices were deployed for different periods at 8 deep-sea chemosynthesis-based sites in four distinct geographic areas. Pyrosequencing of a fragment of the 16S rRNA-encoding gene was used to describe bacterial communities. Colonization occurred within the first 14 days. The diversity was higher in samples deployed for more than 289 days. After 289 days, no relation was observed between community richness and deployment duration, suggesting that diversity may have reached saturation sometime in between. Communities in long-term deployments were different, and their composition was mainly influenced by the geographical location where devices were deployed. Numerous sequences related to horizontally-transmitted chemosynthetic symbionts of metazoans were identified. Their potential status as free-living forms of these symbionts was evaluated based on sequence similarity with demonstrated symbionts. Results suggest that some free-living forms of metazoan symbionts or their close relatives, such as Epsilonproteobacteria associated with the shrimp <em>Rimicaris exoculata</em>, are efficient colonizers of plant substrates at vents and seeps.</p>
},
	issn = {1664-302X},
	doi = {10.3389/fmicb.2015.00162},
	author = {Szafranski, Kamil M and Deschamps, Philippe and Cunha, Marina R and Sylvie M Gaudron and S{\'e}bastien Duperron}
}
@article {4358,
	title = {Comparative phylogeography of Javanese and Balinese freshwater fishes: DNA barcodes shed light on Quaternary range expansion dynamic in a biodiversity hotspot.},
	journal = {Genome},
	volume = {58},
	year = {2015},
	pages = {230},
	author = {Hutama, A. and Darhuddin, H. and Fr{\'e}d{\'e}ric Busson and Sauri, S and Hanner, R and Philippe Keith and Hadiaty, Renny and Hubert, N}
}
@article {4240,
	title = {Compte rendu du s{\'e}minaire du groupe de travail {\guillemotleft} mangroves {\guillemotright}. Paris, MNHN, 28-30 septembre 2015. Convention ONEMA/MNHN 2015. 12 pages.},
	year = {2015},
	keywords = {Bioindication, DCE, DOM, Mangrove},
	author = {Guillaume Dirberg}
}
@article {3559,
	title = {Concentrations and Fractionation of Carbon, Iron, Sulfur, Nitrogen and Phosphorus in Mangrove Sediments Along an Intertidal Gradient (Semi-Arid Climate, New Caledonia)},
	journal = {J. Mar. Sci. Eng.},
	year = {2015},
	month = {02/2015},
	pages = {52-57},
	type = {OPEN ACCESS},
	abstract = {<p>In mangrove ecosystems, strong reciprocal interactions exist between plant and substrate. Under semi-arid climate, Rhizophora spp. are usually predominant, colonizing the seashore, and Avicennia marina develops at the edge of salt-flats, which is the highest zone in the intertidal range. Along this zonation, distribution and speciation of C, Fe, S, N, and P in sediments and pore-waters were investigated. From the land-side to the sea-side of the mangrove, sediments were characterized by I/ increase in: (i) water content; (ii) TOC; (iii) mangrove-derived OM; II/ and decrease in: (i) salinity; (ii) redox; (iii) pH; (iv) solid Fe and solid P. Beneath Avicennia and Rhizophora, TS accumulated at depth, probably as a result of reduction of iron oxides and sulfate. The loss of total Fe observed towards the sea-side may be related to sulfur oxidation and to more intense tidal flushing of dissolved components. Except the organic forms, dissolved N and P concentrations were very low beneath Avicennia and Rhizophora stands, probably as a result of their uptake by the root systems. However, in the unvegetated salt-flat, NH4+ can accumulate in organic rich and anoxic layers. This study shows: (i) the evolution of mangrove sediment biogeochemistry along the intertidal zone as a result of the different duration of tidal inundation and organic enrichment; and (ii) the strong links between the distribution and speciation of the different elements.</p>
},
	keywords = {biogeochemistry, Mangrove, New Caledonia, zonation},
	issn = {2077-1312},
	author = {Jonhatan Deborde and Cyril Marchand and Nathalie Molnar and Luc Della-Patrona and Tarik Meziane}
}
@article {3937,
	title = {Demonstration of the Coexistence of Duplicated LH Receptors in Teleosts, and Their Origin in Ancestral Actinopterygians.},
	journal = {PLoS One},
	volume = {10},
	year = {2015},
	month = {2015},
	pages = {e0135184},
	abstract = {<p>Pituitary gonadotropins, FSH and LH, control gonad activity in vertebrates, via binding to their respective receptors, FSHR and LHR, members of GPCR superfamily. Until recently, it was accepted that gnathostomes possess a single FSHR and a single LHR, encoded by fshr and lhcgr genes. We reinvestigated this question, focusing on vertebrate species of key-phylogenetical positions. Genome analyses supported the presence of a single fshr and a single lhcgr in chondrichthyans, and in sarcopterygians including mammals, birds, amphibians and coelacanth. In contrast, we identified a single fshr but two lhgcr in basal teleosts, the eels. We further showed the coexistence of duplicated lhgcr in other actinopterygians, including a non-teleost, the gar, and other teleosts, e.g. Mexican tetra, platyfish, or tilapia. Phylogeny and synteny analyses supported the existence in actinopterygians of two lhgcr paralogs (lhgcr1/ lhgcr2), which do not result from the teleost-specific whole-genome duplication (3R), but likely from a local gene duplication that occurred early in the actinopterygian lineage. Due to gene losses, there was no impact of 3R on the number of gonadotropin receptors in extant teleosts. Additional gene losses during teleost radiation, led to a single lhgcr (lhgcr1 or lhgcr2) in some species, e.g. medaka and zebrafish. Sequence comparison highlighted divergences in the extracellular and intracellular domains of the duplicated lhgcr, suggesting differential properties such as ligand binding and activation mechanisms. Comparison of tissue distribution in the European eel, revealed that fshr and both lhgcr transcripts are expressed in the ovary and testis, but are differentially expressed in non-gonadal tissues such as brain or eye. Differences in structure-activity relationships and tissue expression may have contributed as selective drives in the conservation of the duplicated lhgcr. This study revises the evolutionary scenario and nomenclature of gonadotropin receptors, and opens new research avenues on the roles of duplicated LHR in actinopterygians.</p>
},
	issn = {1932-6203},
	doi = {10.1371/journal.pone.0135184},
	author = {Gersende Maugars and Sylvie Dufour}
}
@article {4205,
	title = {Description of the skeletal anatomy of reared juveniles of Pseudoplatystoma~punctifer (Castelnau, 1855) with notes on skeletal anomalies},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {88{\textendash}97},
	abstract = {<p>This study aimed at describing the normal bony skeleton of Pseudoplatystoma\&nbsp;punctifer juveniles to use as a reference when assessing the adequacy of nutritional and environmental conditions in experimental rearing during the early developmental stages and to provide a baseline for characterizing skeletal anomalies that might appear in rearing trials with this species. Fertilized eggs and newly hatched P.\&nbsp;punctifer larvae were incubated at 27.8\&nbsp;{\textpm}\&nbsp;0.4{\textdegree}C in two 60-L tanks (50-L water volume) connected to a clear water recirculating system. At 3\&nbsp;days post fertilization {\textendash} dpf (2\&nbsp;days post hatching {\textendash} dph) larvae were reared in three 40-L tanks (30-L water volume; initial n\&nbsp;=\&nbsp;2700 larvae per tank; 28.3\&nbsp;{\textpm}\&nbsp;0.4{\textdegree}C, pH 6.9\&nbsp;{\textpm}\&nbsp;0.2, dissolved oxygen 8.2\&nbsp;{\textpm}\&nbsp;0.5\&nbsp;mg\&nbsp;L-1, N{\textendash}NO2 0.04\&nbsp;{\textpm}\&nbsp;0.02\&nbsp;mg\&nbsp;L-1, N{\textendash}NH4 0.14\&nbsp;{\textpm}\&nbsp;0.05\&nbsp;mg\&nbsp;L-1; 0L:24D photoperiod) and fed as follows: non-enriched Artemia spp. nauplii from 4 to 21 dpf (3{\textendash}20 dph) and a commercial compound diet from 18 dpf onwards. Pseudoplatystoma\&nbsp;punctifer juveniles (23.2\&nbsp;{\textpm}\&nbsp;5.5\&nbsp;mm standard length, SL, n\&nbsp;=\&nbsp;58) were stained with alizarin red and their skeletal structures analysed and identified under stereoscope. Pseudoplatystoma\&nbsp;punctifer presents an osseous skeleton typical of catfishes, consisting of a broad and depressed skull containing small eyes, 43{\textendash}44 vertebrae (44 being the most frequent), a caudal fin complex composed of one epural, five hypurals, one parhypural and two hypurapophyses, dorsal and pectoral fins with spines and anal and adipose fins. The observed occurrence of several skeletal anomalies indicates that the rearing conditions might have been suboptimal.</p>
},
	issn = {1439-0426},
	doi = {10.1111/jai.12983},
	url = {http://dx.doi.org/10.1111/jai.12983},
	author = {Estivals, G and Carmen Garc{\'\i}a-D{\'a}vila and Darias, Maria}
}
@article {8584,
	title = {Dispersal and diving adjustments of green turtles in response to dynamic environmental conditions during post-nesting migration},
	journal = {PLOS ONE},
	volume = {10},
	year = {2015},
	month = {Nov-09-2016},
	pages = {e0137340},
	doi = {10.1371/journal.pone.0137340},
	url = {https://dx.plos.org/10.1371/journal.pone.0137340},
	author = {Chambault, Philippine and Pinaud, David and Vantrepotte, Vincent and Kelle, Laurent and Entraygues, Mathieu and Guinet, Christophe and Berzins, Rachel and Bilo, Karin and Gaspar, Philippe and de Thoisy, Beno{\^\i}t and Le Maho, Yvon and Chevallier, Damien}
}
@article {Martin2015991,
	title = {Dispersal capacities of anadromous Allis shad population inferred from a coupled genetic and otolith approach},
	journal = {Canadian Journal of Fisheries and Aquatic Sciences},
	volume = {72},
	number = {7},
	year = {2015},
	note = {cited By 13},
	pages = {991-1003},
	doi = {10.1139/cjfas-2014-0510},
	url = {https://www.nrcresearchpress.com/doi/abs/10.1139/cjfas-2014-0510?journalCode=cjfas},
	author = {Martin, J. and Rougemont, Q. and Drouineau, H. and Launey, S. and Jatteau, P. and Bareille, G. and Berail, S. and P{\'e}cheyran, C. and Eric Feunteun and Roques, S. and Clav{\'e}, D. and Nach{\'o}n, D.J. and Antunes, C. and Mota, M. and R{\'e}veillac, E. and Daverat, F.}
}
@article {3524,
	title = {Diversity of trophic niches among herbivorous fishes on a Caribbean reef (Guadeloupe, Lesser Antilles), evidenced by stable isotope and gut content analyses},
	journal = {Journal of Sea Reasearch},
	volume = {95},
	year = {2015},
	pages = {124-131},
	keywords = {Caribbean reefs, functional diversity, gut contents, herbivorous fishes, Stable isotopes, trophic niches},
	author = {Charlotte R. Dromard and Yolande Bouchon-Navaro and Mireille Harmelin-Vivien and Claude Bouchon}
}
@article {4356,
	title = {DNA barcoding of Javanese and Balinese freshwater fishes: molecular insights into a poorly known ichthyofauna.},
	journal = {Genome},
	volume = {58},
	year = {2015},
	pages = {209},
	author = {Darhuddin, H. and Hutama, A. and Fr{\'e}d{\'e}ric Busson and Sauri, S and Philippe Keith and Hanner, R and Hadiaty, Renny and Hubert, Nicolas}
}
@article {3773,
	title = {The Dopaminergic Neurons Controlling Anterior Pituitary Functions: Anatomy and Ontogenesis in Zebrafish.},
	journal = {Endocrinology},
	year = {2015},
	month = {2015 May 12},
	pages = {en20151091},
	abstract = {<p>Dopaminergic (DA) neurons located in the preoptico-hypothalamic region of the brain exert a major neuroendocrine control on reproduction, growth and homeostasis by regulating the secretion of anterior pituitary (or adenohypophysis) hormones. Here, using a retrograde tract tracing experiment, we identified the neurons playing this role in the zebrafish. The DA cells projecting directly to the anterior pituitary are localized in the most anteroventral part of the preoptic area, and we named them preoptico-hypophyseal DA (POHDA) neurons. During development, these neurons do not appear before 72 hours post fertilization (hpf) and are the last dopaminergic cell group to differentiate. We found that the number of neurons in this cell population continues to increase life-long, proportionally to the growth of the fish. BrdU incorporation analysis suggested that this increase is due to continuous neurogenesis and not due to a phenotypic change in already existing neurons. Finally, expression profiles of several genes (foxg1a, dlx2a and nr4a2a/b) were different in the POHDA compared to the adjacent suprachiasmatic DA neurons, suggesting that POHDA neurons develop as a distinct DA cell population in the preoptic area. This study offers some insights into the regional identity of the preoptic area and provides the first bases for future functional genetic studies on the development of DA neurons controlling anterior pituitary functions.</p>
},
	issn = {1945-7170},
	doi = {10.1210/en.2015-1091},
	author = {Fontaine, Romain and Affaticati, Pierre and Bureau, Charlotte and Colin, Ingrid and Demarque, Micha{\"e}l and Sylvie Dufour and Vernier, Philippe and Yamamoto, Kei and Pasqualini, Catherine}
}
@article {4050,
	title = {Is drift the primary process promoting the resilience of river invertebrate communities? A manipulative field experiment in an intermittent alluvial river},
	journal = {Freshwater Biology},
	year = {2015},
	abstract = {<p>ABSTRACT: 1. In river systems, aquatic invertebrate communities are surprisingly persistent over time and generally recover quickly from disturbances. Drift has long been viewed as the primary process promoting this resilience, and it plays a important role in predictive models of community composition and concepts in lotic ecology. More recently, other processes such as vertical migration from the hyporheic zone, aerial oviposition from distant refuges and the use of resistance forms (e.g. diapause) have received greater recognition and support for their importance. 2. In this study, the view that drift is the primary process promoting invertebrate community resilience was challenged in an intermittent alluvial river using reach-scale flow manipulations. First, six treatment channels were completely dried for 1 week, while three others were left flowing to be used as controls. Second, flow was re-established in channels and drift was either allowed or blocked for a 4-week period. Third, during this period the resilience of community structure, composition and function was compared between treatments, and the potential for colonisation from the drift, hyporheic zone, aerial oviposition and resistance forms was measured. 3. Communities recovered after only 2 weeks in all of the previously dried channels, and contrary to our hypotheses, invertebrate community structure, composition and functional trait composition were not altered by blocking drift, indicating it was not the primary process promoting resilience in this river. 4. Three lines of evidence suggested colonisation from the hyporheic zone and not aerial oviposition nor resistance forms promoted resilience following rewetting including the following: (i) finding all common benthic taxa in the hyporheic zone during the drying event, (ii) a distinct decrease in invertebrate size upon rewetting in all treatment channels and (iii) a negative correlation between resilience and water table depth. 5. This experiment highlighted the potential importance of the hyporheic zone as a key source of colonisation in alluvial rivers and emphasises the need for a three-dimensional perspective when considering community resilience in rivers. Adaptive management approaches are needed to direct attention to sources (e.g. hyporheic zone) that are essential to promoting community resilience in rivers facing increased pressures due to climate change, water abstraction and flow regime alteration.</p>
},
	doi = {DOI:10.1111/fwb.12658},
	author = {R. Vander Vorste and F. Malard and T. Datry}
}
@article {3774,
	title = {Duplicated leptin receptors in two species of eel bring new insights into the evolution of the leptin system in vertebrates.},
	journal = {PLoS One},
	volume = {10},
	year = {2015},
	month = {2015},
	pages = {e0126008},
	abstract = {<p>Since its discovery in mammals as a key-hormone in reproduction and metabolism, leptin has been identified in an increasing number of tetrapods and teleosts. Tetrapods possess only one leptin gene, while most teleosts possess two leptin genes, as a result of the teleost third whole genome duplication event (3R). Leptin acts through a specific receptor (LEPR). In the European and Japanese eels, we identified two leptin genes, and for the first time in vertebrates, two LEPR genes. Synteny analyses indicated that eel LEPRa and LEPRb result from teleost 3R. LEPRb seems to have been lost in the teleost lineage shortly after the elopomorph divergence. Quantitative PCRs revealed a wide distribution of leptins and LEPRs in the European eel, including tissues involved in metabolism and reproduction. Noticeably, leptin1 was expressed in fat tissue, while leptin2 in the liver, reflecting subfunctionalization. Four-month fasting had no impact on the expression of leptins and LEPRs in control European eels. This might be related to the remarkable adaptation of silver eel metabolism to long-term fasting throughout the reproductive oceanic migration. In contrast, sexual maturation induced differential increases in the expression of leptins and LEPRs in the BPG-liver axis. Leptin2 was strikingly upregulated in the liver, the central organ of the reproductive metabolic challenge in teleosts. LEPRs were differentially regulated during sexual maturation, which may have contributed to the conservation of the duplicated LEPRs in this species. This suggests an ancient and positive role of the leptin system in the vertebrate reproductive function. This study brings new insights on the evolutionary history of the leptin system in vertebrates. Among extant vertebrates, the eel represents a unique case of duplicated leptins and leptin receptors as a result of 3R.</p>
},
	issn = {1932-6203},
	doi = {10.1371/journal.pone.0126008},
	author = {Morini, Marina and Pasquier, J{\'e}r{\'e}my and Dirks, Ron and van den Thillart, Guido and Tomkiewicz, Jonna and Karine Rousseau and Sylvie Dufour and Anne-Gaelle Lafont}
}
@article {4051,
	title = {Ecological research and management of intermittent rivers: an historical review and future directions},
	journal = {Freshwater Biology},
	year = {2015},
	abstract = {<p>ABSTRACT: 1. Rivers and streams that do not flow permanently (herein intermittent rivers; IRs) make up a large proportion of the world{\textquoteright}s inland waters and are gaining widespread attention. We review the research on IRs from its early focus on natural history through to current application in management and policy. 2. The few early studies of the ecology of IRs were largely descriptive. Nevertheless, in the 1970s, synthesis of this sparse research complemented work on temporary standing waters to found a powerful framework for much of the subsequent research on IRs. 3. Research on the ecology and biogeochemistry of IRs continues to fuel our understanding of resistance and resilience to drying and flooding as disturbances. Syntheses of the growing literature, including cross-continental and cross-climate comparisons, are revealing the generality and individuality of ecological and ecosystem responses to flow cessation and surface water loss. Meanwhile, increasing numbers of experiments test the causality of these responses. 4. Much of the increased consideration of IRs in research, management and policy is driven by the observed and projected shifts in flow regimes from perennial to intermittent associated with changes in land and water use and climate, superimposed on the high incidence of natural intermittency. The need to protect and better manage IRs is prompting researchers to develop new or modified methods to monitor flow status and assess the ecological condition of these systems. 5. Intermittent river research and management will benefit from greater exploration of aquatic{\textendash}terrestrial linkages, wet{\textendash}dry cycling and temporal dynamics, more-detailed mapping and predictive modelling of flow intermittency and the application of metapopulation and metacommunity concepts alongside multiple-stressors and novel-ecosystems research. By building on existing knowledge, continuing to develop quantitative models and distribution maps and using experiments to test hypotheses and concepts, we can further ecological understanding and wise management of these ubiquitous ecosystems.</p>
},
	doi = {DOI:10.1111/fwb.12646},
	author = {C. Leigh and A.J. Boulton and J. Courtwright and T. Datry}
}
@article {3936,
	title = {Editorial: A Comparative Survey of the RF-Amide Peptide Superfamily.},
	journal = {Front Endocrinol (Lausanne)},
	volume = {6},
	year = {2015},
	month = {2015},
	pages = {120},
	issn = {1664-2392},
	doi = {10.3389/fendo.2015.00120},
	author = {Karine Rousseau and Sylvie Dufour and Vaudry, Hubert}
}
@article {3505,
	title = {Effects of subchronic exposure to glyphosate in juvenile oysters (Crassostrea gigas): From molecular to individual levels.},
	journal = {Mar Pollut Bull},
	year = {2015},
	month = {2014 Oct 30},
	abstract = {<p>Glyphosate-based herbicides are extensively used and can be measured in aquatic ecosystems, including coastal waters. The effect of glyphosate on non-target organisms is an issue of worldwide concern. The aim of this study was to investigate the effects of subchronic exposure to glyphosate in juvenile oysters, <em>Crassostrea gigas</em>. Yearling oysters were exposed to three concentrations of glyphosate (0.1, 1 and 100μgL(-1)) for 56days. Various endpoints were studied, from the individual level (e.g., gametogenesis and tissue alterations) to the molecular level (mRNA quantification), including biochemical endpoints such as glutathione-S-transferase (GST) and catalase activities and malondialdehyde content. No mortality and growth occurred during the experiment, and individual biomarkers revealed only slight effects. The levels of gene expression significantly increased in oysters exposed to the highest glyphosate concentration (GST and metallothioneins) or to all concentrations (multi-xenobiotic resistance). These results suggested an activation of defence mechanisms at the molecular level.</p>
},
	issn = {1879-3363},
	doi = {10.1016/j.marpolbul.2014.10.026},
	author = {Mottier, A and S{\'e}guin, Alexis and Devos, Alexandre and Le Pabic, C and Voiseux, C and Lebel, Jean-Marc and Antoine Serpentini and Fievet, B and Katherine Costil}
}
@article {3984,
	title = {Environmental microbiology as a mosaic of explored ecosystems and issues},
	journal = {Environmental Science and Pollution Research},
	volume = {22},
	year = {2015},
	pages = {13577-13598},
	keywords = {Critical zone, Environmental microbiology, Microbial ecology, Microbial ecosystems},
	issn = {0944-1344},
	doi = {10.1007/s11356-015-5164-5},
	url = {http://dx.doi.org/10.1007/s11356-015-5164-5},
	author = {Faure, Denis and Bonin, Patricia and Duran, Robert and The EC2CO consortium}
}
@article {3761,
	title = {Epsilonproteobacteria as gill epibionts of the hydrothermal vent gastropod Cyathermia naticoides (North East-Pacific Rise)},
	journal = {Marine Biology},
	volume = {162},
	year = {2015},
	month = {11 D{\'e}c 2014},
	pages = {435-448},
	abstract = {<p>Mollusks, and particularly gastropods, are one of the major taxonomic groups at vents. In these ecosystems, devoid of light, chemoautotrophic bacteria are at the base of the food web and symbiotic association between metazoa and these bacteria is numerous. Nevertheless, apart few {\textquotedblleft}large-size{\textquotedblright} well-known species, the {\textquotedblleft}small-size{\textquotedblright} gastropods (shell \&lt;5\&nbsp;mm), although very abundant, remain poorly studied regarding symbioses. We investigated here Cyathermia naticoides (War{\'e}n and Bouchet in Zool Scr 18(1), 1989), a small coiled gastropod found in abundance on the East Pacific Rise among Riftia pachyptila tubes, and usually inferred to graze on tubeworm bacterial cover, and/or filter feeding. Among mollusks, symbioses are well known in large species and almost exclusively rely on sulfide or methane-oxidizing proteobacterial endosymbionts, occurring within the host tissues in gill epithelial bacteriocytes. Combining several approaches (molecular biology, microscopy, stable isotopes analyses), we described here an unusual symbiosis, where autotrophic filamentous Epsilonproteobacteria are located extracellularly, at the base of host gill filaments. Numerous endocytotic lysosome-like structures were observed in the gill epithelium of the animal suggesting bacteria may contribute to its nutrition through intracellular digestion by gill cells. Additional food source by non-symbiotic proteobacteria grazed on R. pachyptila tubes could complete the diet. The possible role of temperature in the selection of Epsilon- vs Gammaproteobacterial partners is discussed.</p>
},
	url = {http://link.springer.com/article/10.1007/s00227-014-2591-7$\#$},
	author = {Magali Zbinden and Marqu{\'e}, Lise and Sylvie M Gaudron and Juliette Ravaux and Nelly L{\'e}ger and S{\'e}bastien Duperron}
}
@article {3554,
	title = {Exploitation of intertidal feeding ressources by the red knot Calidris canutus under megatidal conditions (Bay of Saint-Brieuc, France)},
	journal = {Journal of Sea Research},
	volume = {96},
	year = {2015},
	pages = {23-30},
	author = {Anthony Sturbois and Alain Ponsero and Nicolas Desroy and Patrick Le Mao and J{\'e}r{\^o}me Fournier}
}
@article {3663,
	title = {Foraminiferal assemblages as bioindicators to assess potential pollution in mangroves used as a natural biofilter for shrimp farm effluents (New Caledonia)},
	journal = {Marine Pollution Bulletin},
	volume = {93},
	year = {2015},
	month = {15 April 2015},
	pages = {103-120},
	type = {Research},
	abstract = {<p>In New Caledonia, semi-intensive shrimp farms release untreated effluents into the mangrove. Foraminiferal assemblages were analyzed for assessing the impact of effluent release on the benthic compartment. Comparison was made between samples collected (1) in an effluent receiving mangrove before and after the rearing cycle, and (2) for one-year monitoring an effluent receiving and a control mangrove. The distribution of foraminiferal assemblages was primarily driven by the gradient between\&nbsp;Rhizophora\&nbsp;stands and salt-flats, related to salinity and tidal elevation, and by seasonal cycles. The potential impact of effluent release was due to the combined effects of normal-saline effluents on surface salinity, and of nutrient input and microbial stimulation on food availability. Foraminiferal assemblages did not indicate a substantial impact of farm effluents and suggest that semi-intensive shrimp farming using mangrove for effluent discharge may appear as a sustainable solution in New Caledonia, when considering only the impact on the mangrove itself.</p>
},
	keywords = {Effluents, fatty acids, Foraminifera, Mangrove, Shrimp farming, SW Pacific},
	doi = {10.1016/j.marpolbul.2015.02.009},
	author = {Debenay,  J-P and Cyril Marchand and Nathalie Molnar and Ad{\'e}laide Aschenbroich and Tarik Meziane}
}
@article {4429,
	title = {The freshwater fish fauna history between Rhine and Ebro: general considerations and comments from on-going developments in fish taxonomy.},
	journal = {Frontiers in Marine Science},
	volume = {2},
	year = {2015},
	author = {Persat, Henri and Denys, Ga{\"e}l and Dettai, Agn{\`e}s and Philippe Keith}
}
@article {3862,
	title = {Gonadal transcriptome analysis of wild contaminated female European eels during artificial gonad maturation.},
	journal = {Chemosphere},
	volume = {139},
	year = {2015},
	month = {2015 Jul 6},
	pages = {303-309},
	abstract = {<p>Since the early 1980s, the population of European eels (Anguilla anguilla) has dramatically declined. Nowadays, the European eel is listed on the red list of threatened species (IUCN Red List) and is considered as critically endangered of extinction. Pollution is one of the putative causes for the collapse of this species. Among their possible effects, contaminants gradually accumulated in eels during their somatic growth phase (yellow eel stage) would be remobilized during their reproductive migration leading to potential toxic events in gonads. The aim of this study was to investigate the effects of organic and inorganic contaminants on the gonad development of wild female silver eels. Female silver eels from two sites with differing contamination levels were artificially matured. Transcriptomic analyses by means of a 1000 candidate gene cDNA microarray were performed on gonads after 11weeks of maturation to get insight into the mechanisms of toxicity of contaminants. The transcription levels of several genes, that were associated to the gonadosomatic index (GSI), were involved in mitotic cell division but also in gametogenesis. Genes associated to contaminants were mainly involved in the mechanisms of protection against oxidative stress, in DNA repair, in the purinergic signaling pathway and in steroidogenesis, suggesting an impairment of gonad development in eels from the polluted site. This was in agreement with the fact that eels from the reference site showed a higher gonad growth in comparison to contaminated fish.</p>
},
	issn = {1879-1298},
	doi = {10.1016/j.chemosphere.2015.06.007},
	author = {Baillon, Lucie and Oses, Jennifer and Pierron, Fabien and Bureau du Colombier, Sarah and Caron, Antoine and Normandeau, Eric and Lambert, Patrick and Couture, Patrice and Labadie, Pierre and Budzinski, H{\'e}l{\`e}ne and Sylvie Dufour and Bernatchez, Louis and Baudrimont, Magalie}
}
@article {4203,
	title = {Growth, survival and the histology of the digestive tract of juvenile Osteoglossum bicirrhosum (Cuvier, 1829) fed three diets containing different protein and lipid levels},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {67{\textendash}73},
	abstract = {<p>The influence of three commercial diets with different protein and lipid contents (40\&nbsp;:\&nbsp;14, 45\&nbsp;:\&nbsp;8, 48\&nbsp;:\&nbsp;8 protein\&nbsp;:\&nbsp;lipid {\textendash} P\&nbsp;:\&nbsp;L, in \% dry weight of diet) on growth performance, survival and the histology of the liver and intestine was analysed in early juveniles of silver arowana, Osteoglossum\&nbsp;bicirrhosum, reared in captivity. Individuals (initial wet\&nbsp;weight{\textendash}Wi\&nbsp;=\&nbsp;1.07\&nbsp;{\textpm}\&nbsp;0.04\&nbsp;g; total length{\textendash}TL\&nbsp;= 6.0\&nbsp;{\textpm} 0.17\&nbsp;cm) were raised in triplicate (n\&nbsp;=\&nbsp;12 fish per tank) at 26.2\&nbsp;{\textpm}\&nbsp;0.1{\textdegree}C and fed one of three commercial diets over 60\&nbsp;days. At the end of the trial, survival (90.5\&nbsp;{\textpm}\&nbsp;3.3\%) and condition factor (0.5\&nbsp;{\textpm}\&nbsp;0.02) were not affected by dietary treatments, whereas specific growth rate, TL and W gain were lower in animals fed the 40P\&nbsp;:\&nbsp;14L diet. Histological analysis revealed a larger accumulation of lipid droplets in the intestines of the group supplied with the 40P\&nbsp;:\&nbsp;14L diet, as well as a larger surface of hepatic lipid vacuoles compared to the other treatments, although no signs of steatosis were observed. Juveniles fed the 48P\&nbsp;:\&nbsp;8L diet displayed the lowest liver lipid accumulation; however, a protein content higher than 45\% did not improve growth performance. The intestine and liver lipid accumulation of individuals fed the 45P\&nbsp;:\&nbsp;8L diet might indicate a more balanced lipidic metabolism. Intestine and liver histologies proved to be useful markers to identify the nutritional condition in juveniles of O.\&nbsp;bicirrhosum, even when differences in nutritional composition were subtle (i.e. protein variation of 3\%).</p>
},
	issn = {1439-0426},
	doi = {10.1111/jai.12977},
	url = {http://dx.doi.org/10.1111/jai.12977},
	author = {Darias, Maria and G{\'o}mez, M. A. and Salvador Tello and Gisbert, E}
}
@article {6822,
	title = {How are microbial and detrital sources partitioned among and within gastropods species at East Pacific Rise hydrothermal vents?},
	journal = {Marine Ecology},
	volume = {36},
	year = {2015},
	pages = {18-34},
	abstract = {Abstract For the last few decades, trophic ecology has usually been investigated by using stable isotopes. However, the isotopic signatures of potential food sources in hydrothermal vent ecosystems are often unknown and so their relative contribution to the consumers{\textquoteright} diet, as well as resource partitioning, are then difficult to estimate. Here, we used a recent Bayesian mixing model (stable isotope analysis in R, SIAR) based on δ13C and δ15N to estimate the contribution of multiple food sources to the diet of eight vent gastropods that can reach high densities at hydrothermal vents (Lepetodrilus elevatus, Lepetodrilus pustulosus, Lepetodrilus ovalis, Eulepetopsis vitrea, Cyathermia naticoides, Peltospira delicata, Peltospira operculata and Rhynchopelta concentrica). These species, known as primary consumers (mostly bacterivores and detritivores), were sampled on the South-East Pacific Rise at 17{\textdegree}25'\&nbsp;S and the North-East Pacific Rise at 9{\textdegree}50'\&nbsp;N and 12{\textdegree}50'\&nbsp;N. Several potential food sources were sampled according to the gastropod habitat on the chimney wall, or mussel beds (proxies of Gammaproteobacteria form I RubisCO, Gammaproteobacteria form II RubisCO and Epsilonproteobacteria, biofilms of siboglinid and alvinellid tubes, biofilms of mussel shells and particulate organic matter). Some of these microbial and detrital sources were confirmed as present in the gut content of some small specimens by transmission electron microscopy. Distinct stable isotopic signatures of the potential food sources allowed calculation of their relative contributions to primary consumers{\textquoteright} diets. This revealed that gastropod species living on siboglinid or bathymodiolin habitats are usually generalists, feeding on various pools of microbial or detrital origins. For a particular habitat, sympatric gastropod species partition the food sources, thus avoiding being in competition. Only for the alvinellid habitat Peltospira spp. appeared to be more specialists as the choice of food sources is more reduced.},
	keywords = {Chemosynthetic, gastropods, mixing model, Stable isotopes, trophic niche, vents},
	doi = {10.1111/maec.12260},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/maec.12260},
	author = {Sylvie M Gaudron and Marqu{\'e}, Lise and Eric Thi{\'e}baut and Riera, Pascal and Duperron, S{\'e}bastien and Magali Zbinden}
}
@article {3864,
	title = {How Egg Case Proteins Can Protect Cuttlefish Offspring?},
	journal = {PLoS One},
	volume = {10},
	year = {2015},
	month = {2015},
	pages = {e0132836},
	abstract = {<p><em>Sepia officinalis</em> egg protection is ensured by a complex capsule produced by the female accessory genital glands and the ink bag. Our study is focused on the proteins constituting the main egg case. De novo transcriptomes from female genital glands provided essential databases for protein identification. A proteomic approach in SDS-PAGE coupled with MS unveiled a new egg case protein family: SepECPs, for <em>Sepia officinalis </em>Egg Case Proteins. N-glycosylation was demonstrated by PAS staining SDS-PAGE gels. These glycoproteins are mainly produced in the main nidamental glands. SepECPs share high sequence homology, especially in the signal peptide and the three cysteine-rich domains. SepECPs have a high number of cysteines, with conserved motifs involved in 3D-structure. SDS-PAGE showed that SepECPs could form dimers; this result was confirmed by TEM observations, which also revealed a protein network. This network is similar to the capsule network, and it associates these structural proteins with polysaccharides, melanin and bacteria to form a tight mesh. Its hardness and elasticity provide physical protection to the embryo. In addition, SepECPs also have bacteriostatic antimicrobial activity on GRAM- bacteria. By observing the SepECP / <em>Vibrio aestuarianus</em> complex in SEM, we demonstrated the ability of these proteins to agglomerate bacteria and thus inhibit their growth. These original proteins identified from the outer egg case ensure the survival of the species by providing physical and chemical protection to the embryos released in the environment without any maternal protection.</p>
},
	issn = {1932-6203},
	doi = {10.1371/journal.pone.0132836},
	author = {Cornet, Val{\'e}rie and Jo{\"e}l Henry and Goux, Didier and Duval, Emilie and Bernay, Beno{\^\i}t and Gildas Le Corguille and Corre, Erwan and C{\'e}line Zatylny-Gaudin}
}
@article {8585,
	title = {Identification of key marine areas for conservation based on satellite tracking of post-nesting migrating green turtles (Chelonia mydas)},
	journal = {Biological Conservation},
	volume = {184},
	year = {2015},
	month = {Jan-04-2015},
	pages = {36 - 41},
	issn = {00063207},
	doi = {10.1016/j.biocon.2014.12.021},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S000632071400500X},
	author = {Baudouin, Marie and de Thoisy, Beno{\^\i}t and Chambault, Philippine and Berzins, Rachel and Entraygues, Mathieu and Kelle, Laurent and Turny, Avasania and Le Maho, Yvon and Chevallier, Damien}
}
@article {4047,
	title = {Impact of Galvanic Anode Dissolution onMetal Trace Element Concentrations in Marine Waters},
	journal = {water, air \& soil pollution},
	volume = {226},
	year = {2015},
	month = {11/2015},
	pages = {226-423},
	abstract = {<p>Submerged harbor steel structures often employ cathodic protection using galvanic anodes to guard against corrosion. A laboratory experiment, with three different cathodic protection configurations by galvanic aluminum-based anodes, was performed to evaluate the potential metal transfer from the anodic alloy dissolution into the surrounding marine water. The anode dissolution rate is proportional to the imposed current demands and induced a significant Al, In, and Zn transfer in the dissolved and particulate fractions of the corrosion product layers covering the anode surface. These layers were poorly adherent, even under low hydrodynamic conditions. Consequently, at the anode vicinity, the suspended particle matter and dissolved fraction of surrounding marine waters showed strong enrichments in Al and Zn, respectively, the values of which could potentially affect the adjacent biota. After the anode activation period, however, the metal inputs from galvanic anode dissolution are rapidly diluted by seawater renewal. At regional scale, these metal fluxes should be negligible compared to river and wastewater fluxes. These results also showed that it is difficult to assess the impact of the anode dissolution on the concentrations of metals in the natural environment, especially for metals included in trace amounts in the anode alloy (i.e., Cu, Fe, In, Mn, and Si) in the aquatic compartment.</p>
},
	keywords = {aluminium, galvanic anode, metal transfer, Seawater, Zinc},
	issn = {0049-6979},
	author = {Deborde, J and Refait, P and Paco Bustamante and Christelle Caplat and Basuyaux, O and Grolleau, AM and M-L Mahaut}
}
@article {4202,
	title = {Influence of dietary protein and lipid levels on growth performance and the incidence of cannibalism in Pseudoplatystoma punctifer~(Castelnau, 1855) larvae and early juveniles},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {74{\textendash}82},
	abstract = {<p>The aim of the study was to evaluate the influence of different dietary protein and lipid levels and their ratios on larval growth, survival and the incidence of cannibalism in Pseudoplatystoma punctifer. Larvae were raised in a recirculation system from 3 to 26\&nbsp;days post-fertilization (dpf) (2{\textendash}25\&nbsp;days post hatching, dph) at an initial density of 40 larvae L-1, 27.8\&nbsp;{\textpm}\&nbsp;0.65{\textdegree}C and 0L\&nbsp;:\&nbsp;24D photoperiod. Larvae were fed from 4 to 12 dpf with Artemia nauplii and weaned onto four different compound diets from 13 dpf within 3\&nbsp;days, then fed exclusively with these diets until 26 dpf. These diets contained 30\&nbsp;:\&nbsp;15, 30\&nbsp;:\&nbsp;10, 45\&nbsp;:\&nbsp;15 or 45\&nbsp;:\&nbsp;10 protein\&nbsp;:\&nbsp;lipid (P\&nbsp;:\&nbsp;L) (in \% of dry matter) levels. A control group was fed Artemia nauplii until 17 dpf and weaned thereafter with the 45P\&nbsp;:\&nbsp;10L compound diet. The experiment was carried out in triplicate. Results showed higher growth and survival rates and lower incidence of cannibalism in the group fed the 45P\&nbsp;:\&nbsp;15L diet than in the other treatments. Differences in larval survival and growth performance were associated with the higher protein and lipid content rather than the protein\&nbsp;:\&nbsp;lipid ratio of this diet. When comparing diets with the same protein level, the increase in dietary lipid led to an improvement in growth, suggesting that energy from lipids spares protein for growth in P.\&nbsp;punctifer fingerlings. An Artemia feeding period longer than 12 dpf did not improve larval growth or survival.</p>
},
	issn = {1439-0426},
	doi = {10.1111/jai.12978},
	url = {http://dx.doi.org/10.1111/jai.12978},
	author = {Darias, Maria and Castro-Ruiz, D and Estivals, G and Quazuguel, Patrick and Fern{\'a}ndez, C and Jesus Nu{\~n}ez-Rodriguez and Clota, F. and Gilles, S and Garc{\'\i}a-D{\'a}vila, C and Gisbert, E. and Cahu, Chantal L}
}
@article {4003,
	title = {Integrating Ecosystem Engineering and Food Web Ecology: Testing the Effect of Biogenic Reefs on the Food Web of a Soft-Bottom Intertidal Area},
	journal = {PLoS ONE},
	volume = {10},
	year = {2015},
	month = {10/2015},
	pages = {e0140857},
	abstract = {<p>The potential of ecosystem engineers to modify the structure and dynamics of food webs has recently been hypothesised from a conceptual point of view. Empirical data on the integration of ecosystem engineers and food webs is however largely lacking. This paper investigates the hypothesised link based on a field sampling approach of intertidal biogenic aggregations created by the ecosystem engineer Lanice conchilega (Polychaeta, Terebellidae). The aggregations are known to have a considerable impact on the physical and biogeochemical characteristics of their environment and subsequently on the abundance and biomass of primary food sources and the macrofaunal (i.e. the macro-, hyper- and epibenthos) community. Therefore, we hypothesise that L. conchilega aggregations affect the structure, stability and isotopic niche of the consumer assemblage of a soft-bottom intertidal food web. Primary food sources and the bentho-pelagic consumer assemblage of a L. conchilega aggregation and a control area were sampled on two soft-bottom intertidal areas along the French coast and analysed for their stable isotopes. Despite the structural impacts of the ecosystem engineer on the associated macrofaunal community, the presence of L. conchilega aggregations only has a minor effect on the food web structure of soft-bottom intertidal areas. The isotopic niche width of the consumer communities of the L. conchilega aggregations and control areas are highly similar, implying that consumer taxa do not shift their diet when feeding in a L. conchilega aggregation. Besides, species packing and hence trophic redundancy were not affected, pointing to an unaltered stability of the food web in the presence of L. conchilega.</p>
},
	author = {De Smet, Bart and J{\'e}r{\^o}me Fournier and De Troch, Marleen and Vincx, Magda and Vanaverbeke, Jan}
}
@article {3847,
	title = {Invalidity of Gasterosteus gymnurus (Cuvier, 1829) (Actinopterygii, Gasterosteidae) according to integrative taxonomy. },
	journal = {Cybium},
	volume = {39},
	year = {2015},
	pages = {37-45},
	keywords = {Cytochrome C, Gasterosteidae Gasterosteus aculeatus Gasterosteus gymnurus Gasterosteus islandicus, Integrative taxonomy, oxidase subunit 1},
	author = {Denys, Ga{\"e}l and Geiger Mathias and Persat, Henri and Philippe Keith and Dettai, Agn{\`e}s}
}
@article {4049,
	title = {Invertebrate assemblage responses and the dual roles of resistance and resilience to drying in intermittent rivers},
	journal = {Aquatic Sciences},
	year = {2015},
	abstract = {<p>ABSTRACT: Intermittent rivers are naturally dynamic ecosystems in which flow cessation and riverbed drying cause temporal fluctuations in aquatic biodiversity. We analysed datasets from intermittent rivers in different climate zones across the world to examine responses of aquatic macroinvertebrate assemblages to drying, in relation to both taxonomic composition and traits of resistance and resilience. First, we compared the differences in taxonomic richness and turnover and in trait diversity, richness and redundancy before and after intermittent sites dried with the differences in concurrently sampled perennial sites. We found such high levels of variation in the before-after differences at intermittent and perennial sites that we could not detect statistical differences between them. Second, we examined the effects of climate (arid, Mediterranean, temperate) and durations of dry and post-dry (flowing) periods on responses to drying at intermittent sites. Only climate had a detectable effect; the proportion of taxa at intermittent sites that persisted through drying-rewetting phases was greatest in arid-zone rivers. Regardless of climate, the invertebrates that persisted at intermittent sites were dominated by taxa resistant to drying. By contrast, taxa that persisted at perennial sites had fewer traits conferring resistance but more conferring resilience. The contributions of resistance and resilience combined with the presence of both intermittent and perennial reaches likely supports the long-term stability and persistence of communities in intermittent rivers, despite the inherently high variation in short-term responses to drying.</p>
},
	doi = {DOI:10.1007/s00027-015-0427-2 },
	author = {C. Leigh and N. Bonada and A.J. Boulton and B. Hugueny and S.T. Larned and R. Vander Vorste and T. Datry}
}
@inbook {4008,
	title = {Invert{\'e}br{\'e}s marins introduits dans le Golfe Normand-Breton depuis 1920},
	booktitle = {Atlas Permanent de la mer et du littoral},
	volume = {7},
	number = {51-53},
	year = {2015},
	publisher = {Universit{\'e} de Nantes},
	organization = {Universit{\'e} de Nantes},
	address = {Nantes},
	author = {Laurent Godet and Patrick Le Mao and Eric Thi{\'e}baut and Christian Reti{\`e}re and Louis Cabioc{\textquoteright}h and Franck Gentil and Nicolas Desroy and J{\'e}r{\^o}me Fournier}
}
@article {3879,
	title = {La p{\^e}che aux {\^\i}les Saint-Paul et Amsterdam},
	journal = {Fisheries Centre Research Reports},
	volume = {23},
	year = {2015},
	pages = {37-45},
	author = {Patrice Pruvost and Guy Duhamel and Le Manach, Frederic and Palomares, M L D}
}
@article {6825,
	title = {Long-term maintenance and public exhibition of deep-sea hydrothermal fauna: The AbyssBox project},
	journal = {Deep Sea Research Part II: Topical Studies in Oceanography},
	volume = {121},
	year = {2015},
	pages = {137 - 145},
	abstract = {The AbyssBox project aims to provide the first permanent public exhibition of live deep-sea hydrothermal fauna maintained at in situ pressure. AbyssBox is a pressurized aquarium designed to function permanently. Here we present details of the project after the public exhibition functioned for more than three years at Oc{\'e}anopolis aquarium in Brest, France. We also describe the AbyssBox pressure aquarium, and provide data and observations on vent shrimp (Mirocaris fortunata) and crabs (Segonzacia mesatlantica) that were sampled from 1700m depth at the Lucky Strike vent field (Mid-Atlantic Ridge) during different cruises. While mortalities exceeded 50\% during the first days following sampling, the remaining animals appeared to acclimate fairly well. Some crabs have now been kept for more than 2 years, and some shrimp have spent more than 3 years in captivity. Primarily designed for a public exhibition, the AbyssBox is already used for scientific purposes, since it provides one of the most effective tools for long-term rearing of deep-sea fauna. AbyssBox is a first step towards maintaining a variety of deep-sea fauna year-round at in situ pressure, which will serve both scientific and public interests.},
	keywords = {AbyssBox, Aquaria, Aquariology, Deep waters, Hydrostatic Pressure, Hydrothermal Vents, Public exhibition, Scientific experiments},
	issn = {0967-0645},
	doi = {https://doi.org/10.1016/j.dsr2.2015.05.002},
	url = {http://www.sciencedirect.com/science/article/pii/S0967064515001460},
	author = {Bruce Shillito and Juliette Ravaux and Sarrazin, Jozee and Magali Zbinden and Sarradin, Pierre-Marie and Barthelemy Dominique}
}
@article {5042,
	title = {The mosaic of habitats of the Seine estuary: Insights from food-web modelling and network analysis},
	journal = {ECOLOGICAL MODELLING},
	volume = {312},
	year = {2015},
	month = {09/2015},
	pages = {91-101},
	abstract = {<p class="rtejustify">Ecological network analysis was applied in the Seine estuary ecosystem, northern France, integrating ecological data from the years 1996 to 2002. The Ecopath with Ecosim (EwE) approach was used to model the trophic flows in 6 spatial compartments leading to 6 distinct EwE models: the navigation channel and the two channel flanks in the estuary proper, and 3 marine habitats in the eastern Seine Bay. Each model included 12 consumer groups, 2 primary producers, and one detritus group. Ecological network analysis was performed, including a set of indices, keystoneness, and trophic spectrum analysis to describe the contribution of the 6 habitats to the Seine estuary ecosystem functioning. Results showed that the two habitats with a functioning most related to a stressed state were the northern and central navigation channels, where building works and constant maritime traffic are considered major anthropogenic stressors. The strong top-down control highlighted in the other 4 habitats was not present in the central channel, showing instead (i) a change in keystone roles in the ecosystem towards sediment-based, lower trophic levels, and (ii) a higher system omnivory. The southern channel evidenced the highest system activity (total system throughput), the higher trophic specialisation (low system omnivory), and the lowest indication of stress (low cycling and relative redundancy). Marine habitats showed higher fish biomass proportions and higher transfer efficiencies per trophic levels than the estuarine habitats, with a transition area between the two that presented intermediate ecosystem structure. The modelling of separate habitats permitted disclosing each one{\textquoteright}s response to the different pressures, based on their a priori knowledge. Network indices, although non-monotonously, responded to these differences and seem a promising operational tool to define the ecological status of transitional water ecosystems. (C) 2015 Elsevier B.V. All rights reserved.</p>
},
	issn = {{0304-3800}},
	doi = {{10.1016/j.ecolmodel.2015.05.026}},
	author = {Samuele Tecchio and Rius, Armonie Tous and Dauvin, Jean-Claude and Lobry, Jeremy and G{\'e}raldine Lassalle and Morin, Jocelyne and Bacq, Nicolas and Cachera, Marie and Chaalali, Aur{\'e}lie and Villanueva, Maria Ching and Nathalie Niquil}
}
@article {4398,
	title = {Movement patterns and home range of wild and re-stocked Arapaima gigas (Schinz, 1822) monitored by radio-telemetry in Lake Imiria, Peru},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {10{\textendash}18},
	issn = {1439-0426},
	doi = {10.1111/jai.12972},
	url = {http://dx.doi.org/10.1111/jai.12972},
	author = {Jesus Nu{\~n}ez-Rodriguez and Fabrice Duponchelle and Cotrina-Doria, M. and Renno, Jean-Francois and Ch{\'a}vez Veintemilla, C and Rebaza, C. and Deza, S. and Garc{\'\i}a-D{\'a}vila, C and Chu-Koo, F and Salvador Tello and Baras, Etienne}
}
@article {4552,
	title = {Opinion Paper: how vulnerable are Amazonian freshwater fishes to ongoing climate change?},
	journal = {Journal of Applied Ichthytology},
	volume = {31},
	year = {2015},
	pages = {4-9},
	author = {Thierry Oberdorff and J{\'e}z{\'e}quel, C{\'e}line and Campero, Melina and Carvajal-Vallejos, Fernando and Cornu, Jean-Fran{\c c}ois and Dias, Murilo S and Fabrice Duponchelle and Maldonado, Mabel and H. Ortega and Renno, Jean-Francois and Pablo Tedesco}
}
@article {4234,
	title = {Opinion Paper: how vulnerable are Amazonian freshwater fishes to ongoing climate change?},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {4-9},
	abstract = {<p>With around 15\% of all described freshwater fish species in the world, the Amazon Basin is by far the most fish species- rich freshwater ecosystem on the planet. In this opinion paper, a rough evaluation is given on just how vulnerable Amazonian freshwater fishes are to ongoing climate change. And to argue that current anthropogenic threats through rapid expansion of human infrastructure and economic activ- ities in the basin could be a far greater threat to fish commu- nities than those anticipated by any future climate change. Conservation actions in the Amazon Basin should focus preferentially on reducing the impacts of present-day anthro- pogenic threats.</p>
},
	doi = {doi: 10.1111/jai.12971},
	author = {Thierry Oberdorff and C. J{\'e}z{\'e}quel and M. Campero and F. Carvajal-Vallejos and J.F. Cornu and M.S. Dias and Fabrice Duponchelle and J.A. Maldonado-Ocampo and H. Ortega and J.F. Renno and Pablo Tedesco}
}
@article {4397,
	title = {Periodic life history strategy of Psectrogaster rutiloides, Kner 1858, in the Iquitos~region, Peruvian Amazon},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {31{\textendash}39},
	issn = {1439-0426},
	doi = {10.1111/jai.12974},
	url = {http://dx.doi.org/10.1111/jai.12974},
	author = {Garc{\'\i}a-Vasquez, Aurea and Vargas, Gladys and S{\'a}nchez, H and Salvador Tello and Fabrice Duponchelle}
}
@article {4239,
	title = {Rapport bibliographique pour la mise en place d{\textquoteright}un indicateur mangrove dans le cadre de la DCE Eaux Littorales dans les DOM. Convention ONEMA/MNHN 2015. 35 pages},
	year = {2015},
	keywords = {Bioindication, DCE, Mangrove},
	author = {Guillaume Dirberg}
}
@article {4822,
	title = {Rearing of the Amazon catfish Pseudoplatystoma punctifer (Castelnau, 1855): weaning with dry and moist diets},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {83-87},
	type = {Journal Article},
	issn = {1439-0426},
	doi = {10.1111/jai.12979},
	url = {http://dx.doi.org/10.1111/jai.12979},
	author = {Fern{\'a}ndez-M{\'e}ndez, C. and Frank David and Darias, Maria and Castro-Ruiz, Diana and Jesus Nu{\~n}ez-Rodriguez}
}
@article {4400,
	title = {Re-description of Apistogramma payaminonis Kullander, 1986, with descriptions of two new cichlid species of the genus Apistogramma (Teleostei, Perciformes, Geophaginae) from northern Peru},
	journal = {Vertebrate Zoology},
	volume = {65},
	year = {2015},
	pages = {287-314},
	author = {R{\"o}mer, Uwe and Soares, D. P. and Garc{\'\i}a-D{\'a}vila, C. and Fabrice Duponchelle and Renno, Jean-Francois and Hanh, I.}
}
@article {3385,
	title = {Relationships between biodiversity and the stability of marine ecosystems: Comparisons at a European scale using meta-analysis},
	journal = {Journal of Sea Research},
	volume = {98},
	year = {2015},
	pages = {5-14},
	abstract = {<p>Abstract The relationship between biodiversity and stability of marine benthic assemblages was investigated through meta-analyses using existing data sets (n\&nbsp;=\&nbsp;28) covering various spatial (m{\textendash}km) and temporal (1973{\textendash}2006; ranging from 5 to \&gt;\&nbsp;250\&nbsp;months) scales in different benthic habitats (emergent rock, rock pools and sedimentary habitats) over different European marine systems (North Atlantic and western Mediterranean). Stability was measured by a lower variability in time, and variability was estimated as temporal variance of species richness, total abundance (density or \% cover) and community structure (using Bray{\textendash}Curtis dissimilarities on species composition and abundance). Stability generally decreased with species richness. Temporal variability in species richness increased with the number of species at both quadrat (\&lt;\&nbsp;1\&nbsp;m2) and site (\&nbsp;\&nbsp;100\&nbsp;m2) scales, while no relationship was observed by multivariate analyses. Positive relationships were also observed at the scale of site between temporal variability in species richness and variability in community structure with evenness estimates. This implies that the relationship between species richness or evenness and species richness variability is slightly positive and depends on the scale of observation. Thus, species richness does not stabilize temporal fluctuations in species number, rather species rich assemblages are those most likely to undergo the largest fluctuations in species numbers and abundance from time to time. Changes within community assemblages in terms of structure are, however, generally independent of biodiversity. Except for sedimentary and rock pool habitats, no relationship was observed between temporal variation of total abundances and diversity at either scale. Overall, our results emphasize that the relation between species richness and species-level measures of temporal variability depends on scale of measurements, type of habitats and the marine system (North Atlantic and Mediterranean) considered.</p>
},
	keywords = {Benthic Marine Coastal Habitats, Biodiversity Ecosystem Functioning, Community Variability, Diversity{\textendash}Stability Relationships, Temporal Variability},
	issn = {1385-1101},
	doi = {http://dx.doi.org/10.1016/j.seares.2014.08.004},
	url = {http://www.sciencedirect.com/science/article/pii/S1385110114001609},
	author = {Cusson, Mathieu and Tasman P. Crowe and Rita Ara{\'u}jo and Francisco Arenas and Rebbecca Aspden and Fabio Bulleri and Dominique Davoult and Kirstie Dyson and Simonetta Fraschetti and Kristjan Herk{\"u}l and C{\'e}dric Hubas and Stuart Jenkins and Jonne Kotta and Patrik Kraufvelin and Migne, A and Markus Molis and Olwyen Mulholland and Laure M.-L.J. No{\"e}l and Paterson, David M and James Saunders and Paul J. Somerfield and Isabel Sousa-Pinto and Nicolas Spilmont and Antonio Terlizzi and Lisandro Benedetti-Cecchi}
}
@article {6881,
	title = {Relative abundances of methane- and sulfur-oxidizing symbionts in gills of the deep-sea hydrothermal vent mussel Bathymodiolus azoricus under pressure},
	journal = {Deep Sea Research Part I: Oceanographic Research Papers},
	volume = {101},
	year = {2015},
	month = {Jan-07-2015},
	pages = {7 - 13},
	issn = {09670637},
	doi = {10.1016/j.dsr.2015.03.003},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0967063715000576},
	author = {Szafranski, Kamil M. and Piquet, B{\'e}r{\'e}nice and Bruce Shillito and Lallier, Fran{\c c}ois H. and Duperron, S{\'e}bastien}
}
@article {4201,
	title = {The Research Network on Amazonian Ichthyofauna},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {1{\textendash}3},
	issn = {1439-0426},
	doi = {10.1111/jai.12986},
	url = {http://dx.doi.org/10.1111/jai.12986},
	author = {Darias, Maria and Amadio, S. A. and Rosenthal, H.}
}
@article {4362,
	title = {Revision of vernacular names for the freshwater fish of French Guiana.},
	journal = {Cybium},
	volume = {39},
	year = {2015},
	pages = {279-300},
	author = {Grenand, Pierre and Chapuis, Jean and Cognat Andr{\'e} and Cristinoi Antonia and Davy Damien and Grenand Fran{\c c}oise and Michel J{\'e}gu and Philippe Keith and Martin, Emmanuel and Nemo Fran{\c c}ois and Pagezy H{\'e}l{\`e}ne and Le Bail, Pierre-Yves}
}
@article {4554,
	title = {Shell growth, microstructure and composition over the development cycle of the European abalone Haliotis tuberculata},
	journal = {Marine Biology},
	volume = {162},
	year = {2015},
	pages = {687{\textendash}697},
	abstract = {<p>The shell of the European abalone Haliotis tuberculata is a model for studying mechanisms of mollusc shell formation, but the early steps of shell formation and calcification remain poorly documented. The microstructure and the mineralogical and geochemical composition of larval and juvenile shells were investigated by scanning electron microscopy, infrared spectroscopy and ion microprobe analyses (NanoSIMS). Analyses were performed on shells obtained from controlled fertilisations at the hatchery France-Haliotis (Plouguerneau, France) in July 2009 and 2010 using abalone from Roscoff. Shell cross sections revealed the microstructural arrangement of the developing shell, showing progressive biomineral organisation into two differentiated layers, i.e. the outer granular and the internal nacreous layer. Infrared analysis confirmed that the European abalone shell, at every stage of development, was mostly composed of CaCO3 in the form of aragonite. Variations in trace element composition, i.e. Sr/Ca, were measured in the different stages and correlated with micro-structural changes in the shells. Experimental manganese labelling of live abalones produced cathodoluminescence marks in the growing shell sections. The increase in shell thickness can be used to determine the growth rate of an early adult abalone shell.</p>
},
	issn = {1432-1793},
	doi = {10.1007/s00227-015-2615-y},
	url = {http://dx.doi.org/10.1007/s00227-015-2615-y},
	author = {St{\'e}phanie Auzoux-Bordenave and Brahmi, C. and Badou, Aicha and de Raf{\'e}lis, M. and Huchette, S.}
}
@article {3880,
	title = {A short history of the fisheries of Crozet Islands},
	journal = {Fisheries Centre Research Reports},
	volume = {23},
	year = {2015},
	pages = {31},
	issn = {1198 - 6727},
	author = {Patrice Pruvost and Guy Duhamel and Nicolas Gasco and Palomares, M L D}
}
@article {3522,
	title = {Spatio-temporal variations in the composition of organic matter in surface sediments of a mangrove receiving shrimp farm effluents (New Caledonia)},
	journal = {Science of The Total Environment},
	volume = {512{\textendash}513},
	year = {2015},
	pages = {296 - 307},
	abstract = {<p>In order to investigate spatio-temporal variations in the composition and origin of the benthic organic matter (OM) at the sediment surface in mangrove receiving shrimp farm effluents, fatty acid (FA) biomarkers, natural stable isotopes (δ13C and δ15N), C:N ratios and chlorophyll-a (chl-a) concentrations were determined during the active and the non-active period of the farm. Fatty acid compositions in surface sediments within the mangrove forest indicated that organic matter inputs varied along the year as a result of farm activity. Effluents were the source of fresh particulate organic matter for the mangrove, as evidenced by the unsaturated fatty acid (UFA) distribution. The anthropogenic \{MUFA\} 18:1ω9 was not only accumulated at the sediment surface in some parts of the mangrove, but was also exported to the seafront. Direct release of bacteria and enhanced in situ production of fungi, as revealed by specific FAs, stimulated mangrove litter decomposition under effluent runoff condition. Also, microalgae released from ponds contributed to maintain high benthic chl-a concentrations in mangrove sediments in winter and to a shift in microphytobenthic community assemblage. Primary production was high whether the farm released effluent or not which questioned the temporary effect of shrimp farm effluent on benthic microalgae dynamic. This study outlined that mangrove benthic organic matter was qualitatively and quantitatively affected by shrimp farm effluent release and that responses to environmental condition changes likely depended on mangrove stand characteristics.</p>
},
	keywords = {Chlorophyll-a, fatty acids, Mangrove, Organic matter, Shrimp farming, Stable isotopes},
	issn = {0048-9697},
	doi = {http://dx.doi.org/10.1016/j.scitotenv.2014.12.082},
	url = {http://www.sciencedirect.com/science/article/pii/S0048969714017938},
	author = {Ad{\'e}laide Aschenbroich and Cyril Marchand and Nathalie Molnar and Jonhatan Deborde and C{\'e}dric Hubas and Herv{\'e} Rybarczyk and Tarik Meziane}
}
@article {9379,
	title = {Spiralian Phylogeny Informs the Evolution of Microscopic Lineages},
	journal = {Current Biology},
	volume = {25},
	year = {2015},
	month = {Jan-08-2015},
	pages = {2000 - 2006},
	issn = {09609822},
	doi = {10.1016/j.cub.2015.06.068},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0960982215007952},
	author = {Laumer, Christopher~E. and Bekkouche, Nicolas and Kerbl, Alexandra and Goetz, Freya and Neves, Ricardo~C. and S{\o}rensen, Martin~V. and Kristensen, Reinhardt~M. and Hejnol, Andreas and Dunn, Casey~W. and Giribet, Gonzalo and Worsaae, Katrine}
}
@article {Feunteun201569,
	title = {Stable isotopic composition of anguilliform leptocephali and other food web components from west of the Mascarene Plateau},
	journal = {Progress in Oceanography},
	volume = {137},
	year = {2015},
	note = {cited By 14},
	pages = {69-83},
	doi = {10.1016/j.pocean.2015.05.024},
	url = {https://www.sciencedirect.com/science/article/pii/S0079661115001299},
	author = {Eric Feunteun and Miller, M.J. and Alexandre Carpentier and Aoyama, J. and Christine Dupuy and Kuroki, M. and Pagano, M. and R{\'e}veillac, E. and Sellos, D. and Watanabe, S. and Tsukamoto, K. and Otake, T.}
}
@inbook {3878,
	title = {Storage of Karyotyped Voucher Specimens and their Molecular Identification},
	booktitle = {Fish Cytogenetic Techniques: Ray-Fin Fishes and Chondrichthyans},
	year = {2015},
	publisher = {CRC Press},
	organization = {CRC Press},
	edition = {CRC Press},
	abstract = {<p>Fish are currently the only vertebrate group where several hundred new species are still<br />
described each year (Fig. 1). One third of the currently recognized species have been<br />
described in the last 12 years (Fishbase 2002; 2014). The reassesment using modern<br />
approaches of species that were thought to be well known resulted in the discovery of many<br />
new species (Thomas et al. 2014; Zemlak et al. 2009). In a particularly stunning example,<br />
Durand et al.(2012) presented evidence for the presence of many cryptic groups within ...</p>
},
	author = {Dettai, Agn{\`e}s and Patrice Pruvost}
}
@article {3778,
	title = {Temporal and spatial distribution of young Brachyplatystoma spp. (Siluriformes: Pimelodidae) along the rapids stretch of the Madeira River (Brazil) before the construction of two hydroelectric dams},
	journal = {Journal of Fish Biology},
	volume = {86},
	year = {2015},
	pages = {1429-1437},
	author = {Cella-Ribeiro, Ariana and Assakawa, L. F. and Torrente-Vilara, Gislene and Zuanon, Jansen and Leite, R. G. and Doria, C. and Fabrice Duponchelle}
}
@article {3586,
	title = {Temporal and spatial distribution of young Brachyplatystoma spp. (Siluriformes: Pimelodidae) along the rapids stretch of the Madeira River (Brazil) before the construction of two hydroelectric dams},
	journal = {Journal of Fish Biology},
	volume = {86},
	year = {2015},
	month = {04/2015},
	pages = {1429-37},
	author = {Cella Ribeiro, A. and Fugimoto Assakawa, L. and Torrente-Vilara, Gislene and Zuanon, Jansen and Leite, R.G. and Doria, C. and Fabrice Duponchelle}
}
@article {4048,
	title = {Towards understanding the organisation of metacommunities in  highly dynamic ecological systems },
	journal = {Oikos},
	year = {2015},
	abstract = {<p>ABSTRACT: Community ecology recognises today that local biological communities are not only affected by local biotic interactions and abiotic environmental conditions, but also by regional processes (e.g. dispersal). While much is known about how metacommunities are organised in space in terrestrial, marine and freshwater ecological systems, their temporal variations remain poorly studied. Here, we address the question of the dynamics of metacommunities in highly variable systems, using intermittent rivers (IRs), those rivers which temporarily stop flowing or dry up, as a model system. We first review how habitat heterogeneity in space and time influences metacommunity organisation. Second, we compare the metacommunities in IRs to those in perennial rivers (PRs) and develop the idea that IRs could undergo highly dynamic shifts due to the temporal variability in local and regional community processes. Third, we develop the idea that in IRs, metacommunities of the wet and dry phases of IRs are closely intertwined, thereby increasing even more their respective temporal dynamics. Last, we provide a roadmap to stimulate further conceptual and empirical developments of metacommunity research and identify possible applications for improving the management of IRs and other highly dynamic ecological systems.</p>
},
	doi = {doi: 10.1111/oik.02922},
	author = {T. Datry and N. Bonada and J. Heino}
}
@article {5049,
	title = {Trophic networks: How do theories link ecosystem structure and functioning to stability properties? A review},
	journal = {Ecological indicators},
	volume = {52},
	year = {2015},
	pages = {458{\textendash}471},
	author = {Saint-B{\'e}at, B and Dan Baird and H Asmus and R Asmus and Bacher, C and Pacella, S R and Johnson, Galen A and David, Val{\'e}rie and V{\'e}zina, A F and Nathalie Niquil}
}
@inbook {4068,
	title = {Unveiling the evolution of bivalve nacre proteins by shell proteomics of Unionoidae. },
	booktitle = {Biomineralization: from fundamentals to biomaterials \& environmental issues},
	volume = {672},
	year = {2015},
	pages = {pp.158-167},
	edition = {Key Engineering Materials, 978-3-03835-591-5 Trans Tech Publications Ltd},
	chapter = {2},
	author = {Marie, Benjamin and Arivalagan, Jaison and Dubost, Lionel and Berland, Sophie and Marie, Arul and Marin, Fr{\'e}d{\'e}ric}
}
@article {4399,
	title = {Using barcoding of larvae for investigating the breeding seasons of pimelodid catfishes from the Mara{\~n}on, Napo and Ucayali rivers in the Peruvian Amazon},
	journal = {Journal of Applied Ichthyology},
	volume = {31},
	year = {2015},
	pages = {40{\textendash}51},
	issn = {1439-0426},
	doi = {10.1111/jai.12987},
	url = {http://dx.doi.org/10.1111/jai.12987},
	author = {Garc{\'\i}a-D{\'a}vila, C. and Castro-Ruiz, Diana and Renno, Jean-Francois and Chota-Macuyama, Werner and Carvajal-Vallejos, Fernando and Sanchez, H. and Angulo, C. and Nolorbe, C. and Alvarado, J. and Estivals, G and Jesus Nu{\~n}ez-Rodriguez and Fabrice Duponchelle}
}
@article {4392,
	title = {Variations in reproductive strategy of the silver Arowana, Osteoglossum bicirrhosum Cuvier, 1829 from four sub-basins of the Peruvian Amazon},
	journal = {Journal of Applied Ichthyology },
	volume = {31},
	year = {2015},
	pages = {19-30},
	author = {Fabrice Duponchelle and Ruiz-Arce Adela and Waty, A. and Garc{\'\i}a-Vasquez, Aurea and Renno, J-F and Chu-Koo, F and Garc{\'\i}a-D{\'a}vila, C. and Vargas, Gladys and Salvador Tello and Ortiz, A. and Pinedo, R. and Manzanares V{\'a}squez, R. and Jesus Nu{\~n}ez-Rodriguez}
}
@article {3769,
	title = {What did we learn from PEGASEAS forum "Science and Governance of the Channel Marine Ecosystem"?},
	journal = {Mar Pollut Bull},
	volume = {93},
	year = {2015},
	month = {2015 Apr 15},
	pages = {1-4},
	abstract = {<p>As one of the busiest marine ecosystems in the world, the English Channel is subjected to strong pressures due to the human activities occurring within it. Effective governance is required to improve the combined management of different activities and so secure the benefits provided by the Channel ecosystem. In July 2014, a Cross-Channel Forum, entitled "Science and Governance of the Channel Marine Ecosystem", was held in Caen (France) as part of the INTERREG project "Promoting Effective Governance of the Channel Ecosystem" (PEGASEAS). Here we use outputs from the Forum as a framework for providing Channel-specific advice and recommendations on marine governance themes, including the identification of knowledge gaps, which may form the foundation of future projects for the next INTERREG project call (2015-2020).</p>
},
	issn = {1879-3363},
	doi = {10.1016/j.marpolbul.2015.02.021},
	author = {L Evariste and Claquin, Pascal and Jean-Paul Robin and Arnaud Auber and Abigail McQuatters-Gollop and Fletcher, Stephen and Glegg, Gillian and Jean-Claude Dauvin}
}
@article {4678,
	title = {Which factors determine the altitudinal distribution of tropical Andean riverine fishes?},
	journal = {Revista de Biolog{{\'\i}a Tropical/International Journal of Tropical Biology and Conservation},
	volume = {64},
	year = {2015},
	pages = {157{\textendash}176},
	author = {De La Barra, Evans and Zubieta, Jos{\'e} and Aguilera, Gast{\'o}n and Maldonado, Mabel and Marc Pouilly and Oberdorff, Thierry}
}
@article {3638,
	title = {Abnormal ovarian DNA methylation programming during gonad maturation in wild contaminated fish.},
	journal = {Environ Sci Technol},
	volume = {48},
	year = {2014},
	month = {2014 Oct 7},
	pages = {11688-95},
	abstract = {<p>There is increasing evidence that pollutants may cause diseases via epigenetic modifications. Epigenetic mechanisms such as DNA methylation participate in the regulation of gene transcription. Surprisingly, epigenetics research is still limited in ecotoxicology. In this study, we investigated whether chronic exposure to contaminants experienced by wild female fish (Anguilla anguilla) throughout their juvenile phase can affect the DNA methylation status of their oocytes during gonad maturation. Thus, fish were sampled in two locations presenting a low or a high contamination level. Then, fish were transferred to the laboratory and artificially matured. Before hormonal treatment, the DNA methylation levels of the genes encoding for the aromatase and the receptor of the follicle stimulating hormone were higher in contaminated fish than in fish from the clean site. For the hormone receptor, this hypermethylation was positively correlated with the contamination level of fish and was associated with a decrease in its transcription level. In addition, whereas gonad growth was associated with an increase in DNA methylation in fish from the clean site, no changes were observed in contaminated fish in response to hormonal treatment. Finally, a higher gonad growth was observed in fish from the reference site in comparison to contaminated fish.</p>
},
	issn = {1520-5851},
	doi = {10.1021/es503712c},
	author = {Pierron, Fabien and Bureau du Colombier, Sarah and Moffett, Audrey and Caron, Antoine and Peluhet, Laurent and Daffe, Guillemine and Lambert, Patrick and Elie, Pierre and Labadie, Pierre and Budzinski, H{\'e}l{\`e}ne and Sylvie Dufour and Couture, Patrice and Baudrimont, Magalie}
}
@article {Abril2014,
	title = {{Amazon River carbon dioxide outgassing fuelled by wetlands}},
	journal = {Nature},
	volume = {505},
	year = {2014},
	pages = {395-398},
	publisher = {Nature},
	doi = {10.1038/nature12797},
	author = {Gwena{\"e}l Abril and Martinez, Jean Michel and Luis Felipe Artigas and Moreira-Turcq, Patricia and Marc F Benedetti and Vidal, Luciana and Tarik Meziane and Kim, Jung-Hyun and Bernardes, Marcelo C and Savoye, Nicolas and Deborde, Jonathan and Lima Souza, Edivaldo and Alb{\'e}ric, Patrick and Fernandes, Marcelo and de Souza, Landim and Roland, Fabio}
}
@article {3418,
	title = {Bacterial dynamics in a microphytobenthic biofilm: A tidal mesocosm approach},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	month = {09/2014},
	pages = {144-157},
	author = {H{\'e}l{\`e}ne Agogu{\'e} and Clarisse Mallet and Francis Orvain and Margot de Crignis and Fran{\c c}oise Mornet and Christine Dupuy}
}
@article {3264,
	title = {Cephalopods in neuroscience: regulations, research and the 3Rs.},
	journal = {Invert Neurosci},
	volume = {14},
	year = {2014},
	month = {2014 Mar},
	pages = {13-36},
	abstract = {<p>Cephalopods have been utilised in neuroscience research for more than 100\&nbsp;years particularly because of their phenotypic plasticity, complex and centralised nervous system, tractability for studies of learning and cellular mechanisms of memory (e.g. long-term potentiation) and anatomical features facilitating physiological studies (e.g. squid giant axon and synapse). On 1 January 2013, research using any of the about 700 extant species of "live cephalopods" became regulated within the European Union by Directive 2010/63/EU on the "Protection of Animals used for Scientific Purposes", giving cephalopods the same EU legal protection as previously afforded only to vertebrates. The Directive has a number of implications, particularly for neuroscience research. These include: (1) projects will need justification, authorisation from local competent authorities, and be subject to review including a harm-benefit assessment and adherence to the 3Rs principles (Replacement, Refinement and Reduction). (2) To support project evaluation and compliance with the new EU law, guidelines specific to cephalopods will need to be developed, covering capture, transport, handling, housing, care, maintenance, health monitoring, humane anaesthesia, analgesia and euthanasia. (3) Objective criteria need to be developed to identify signs of pain, suffering, distress and lasting harm particularly in the context of their induction by an experimental procedure. Despite diversity of views existing on some of these topics, this paper reviews the above topics and describes the approaches being taken by the cephalopod research community (represented by the authorship) to produce "guidelines" and the potential contribution of neuroscience research to cephalopod welfare.</p>
},
	keywords = {3Rs, Animal welfare, Cephalopods, Directive2010/63/EU, Neuroscience},
	issn = {1439-1104},
	doi = {10.1007/s10158-013-0165-x},
	author = {Fiorito, Graziano and Affuso, Andrea and Anderson, David B and Basil, Jennifer and Laure Bonnaud-Ponticelli and Botta, Giovanni and Cole, Alison and D{\textquoteright}Angelo, Livia and De Girolamo, Paolo and Dennison, Ngaire and Dickel, Ludovic and Di Cosmo, Anna and Di Cristo, Carlo and Gestal, Camino and Fonseca, Rute and Grasso, Frank and Kristiansen, Tore and Kuba, Michael and Maffucci, Fulvio and Manciocco, Arianna and Mark, Felix Christopher and Melillo, Daniela and Osorio, Daniel and Palumbo, Anna and Perkins, Kerry and Ponte, Giovanna and Raspa, Marcello and Shashar, Nadav and Smith, Jane and Smith, David and Sykes, Ant{\'o}nio and Villanueva, Roger and Tublitz, Nathan and Zullo, Letizia and Andrews, Paul}
}
@inbook {5148,
	title = {Chapter 7. Biogeographic patterns of fish},
	booktitle = {Biogeographic Atlas of the Southern Ocean},
	year = {2014},
	pages = {327{\textendash}362},
	edition = {In: De Broyer C., Koubbi P., Griffiths H.J., Raymond B., Udekem d{\textquoteright}Acoz C. d{\textquoteright}, et al. (eds.)},
	chapter = {7},
	isbn = {978-0-948277-28-3},
	author = {Guy Duhamel and Percy-Alexander Hulley and Causse, Romain and Koubbi, Philippe and Vacchi, Marino and Patrice Pruvost and Vigetta, Stephanie and Irisson, J.-O. and Mormede, Sophie and Belchier, Mark and others}
}
@article {3307,
	title = {Chapter Four : Transitions During Cephalopod Life History: The Role of Habitat, Environment, Functional Morphology and Behaviour},
	year = {2014},
	keywords = {Acquisition of behaviours, Adult, Cephalopod ontogeny, Cohort survival, Environmental variability, Habitat shifts, Juvenile, Life stages, Morphological changes, Paralarvae, Subadult},
	author = {Jean-Paul Robin and Roberts, Michael and Zeidberg, Lou and Bloor, Isobel and Rodriguez, Almendra and Brice{\~n}o, Felipe and Downey, Nicola and Mascar{\'o}, Maite and Guerra, Angel and Hofmeister, Jennifer and Barcellos, Diogo D. and Louren{\c c}o, Silvia A.P. and Roper, Clyde F.E. and Moltschaniwskyj, Natalie A. and Green, Corey P. and Mather, Jennifer}
}
@article {3490,
	title = {Characterisation and expression of the biomineralising gene Lustrin A during shell formation of the European abalone Haliotis tuberculata},
	journal = {Comparative Biochemistry and Physiology , Part B},
	volume = {169},
	year = {2014},
	month = {2014},
	pages = {1-8},
	type = {Research article},
	abstract = {<p>The molluscan shell is a remarkable product of a highly biomineralisation process, and is composed of calcium carbonate most commonly in the form of calcite or aragonite. The exceptional mechanical properties of this biomaterial are imparted by the embedded organic matrix which is secreted by the underlying mantle tissue. While many shell-matrix proteins have already been identified within adult molluscan shell, their presence and role in the early developmental stages of larval shell formation are not well understood. In the European abalone <em>Haliotis tuberculata</em>, the shell first forms in the early trochophore larva and develops into a mineralised protoconch in the veliger. Following metamorphosis, the juvenile shell rapidly changes as it becomes flattened and develops a more complex crystallographic profile including an external granular layer and an internal nacreous layer. Among the matrix proteins involved in abalone shell formation, Lustrin A is thought to participate in the formation of the nacreous layer. Here we have identified a partial cDNA coding for the <em>Lustrin A</em> gene in <em>H. tuberculata</em> and have analysed its spatial and temporal expression during abalone development. RT-PCR experiments indicate that <em>Lustrin A</em> is first expressed in juvenile (post-metamorphosis) stages, suggesting that Lustrin A is a component of the juvenile shell, but not of the larval shell. We also detected <em>Lustrin A</em> mRNAs in non-nacre forming cells at the distal-most edge of the juvenile mantle as well as in the nacre-forming region of the mantle. <em>Lustrin A</em> was also expressed in 7-day-old post-larvae, prior to the formation of nacre. These results suggest that Lustrin A plays multiple roles in the shell-forming process and further highlight the dynamic ontogenic nature of molluscan shell formation.</p>
},
	keywords = {biomineralisation, Haliotis tuberculata, larval development, Lustrin A, mollusc, organic matrix, shell},
	author = {Gaume, B{\'e}atrice and Denis, Fran{\c c}oise and Van Wormhoudt, Alain and Huchette, Sylvain and Jackson, Daniel and Avignon, Sol{\`e}ne and St{\'e}phanie Auzoux-Bordenave}
}
@article {4223,
	title = {Colonisation of leaf litter by lotic macroinvertebrates in a headwater stream of the Phachi River (western Thailand)},
	journal = {Fundamental and Applied Limnology},
	volume = {184},
	year = {2014},
	month = {04},
	pages = {109-124},
	doi = {10.1127/1863-9135/2014/0596},
	url = {http://dx.doi.org/10.1127/1863-9135/2014/0596},
	author = {Frank David and Boonsoong, Boonsatien}
}
@article {3428,
	title = {Comparison of the sensitivity of seven marine and freshwater bioassays as regards antidepressant toxicity assessment.},
	journal = {Ecotoxicology},
	volume = {23},
	year = {2014},
	month = {2014 Nov},
	pages = {1744-54},
	abstract = {<p>The hazards linked to pharmaceutical residues like antidepressants are currently a major concern of ecotoxicology because they may have adverse effects on non-target aquatic organisms. Our study assesses the ecotoxicity of three antidepressants (fluoxetine, sertraline and clomipramine) using a battery of marine and freshwater species representing different trophic levels, and compares the bioassay sensitivity levels. We selected the following bioassays: the algal growth inhibition test (Skeletonema marinoi and Pseudokirchneriella subcapitata), the microcrustacean immobilization test (Artemia salina and Daphnia magna), development and adult survival tests on Hydra attenuata, embryotoxicity and metamorphosis tests on Crassostrea gigas, and in vitro assays on primary cultures of Haliotis tuberculata hemocytes. The results showed high inter-species variability in EC50-values ranging from 43 to 15,600\&nbsp;{\textmu}g/L for fluoxetine, from 67 to 4,400\&nbsp;{\textmu}g/L for sertraline, and from 4.70\&nbsp;{\textmu}g/L to more than 100,000\&nbsp;{\textmu}g/L for clomipramine. Algae (S. marinoi and P. subcapitata) and the embryo-larval stages of the oyster C. gigas were the most sensitive taxa. This raises an issue due to their ecological and/or economic importance. The marine crustacean A. salina was the least sensitive species. This difference in sensitivity between bioassays highlights the importance of using a test battery.</p>
},
	issn = {1573-3017},
	doi = {10.1007/s10646-014-1339-y},
	author = {Minguez, Laetitia and Di Poi, C and Farcy, E and Ballandonne, C{\'e}line and Benchouala, Amira and Bojic, Cl{\'e}ment and Cossu-Leguille, Carole and Katherine Costil and Antoine Serpentini and Jean-Marc Lebel and Halm-Lemeille, Marie-Pierre}
}
@article {3278,
	title = {Complex patterns in phytoplankton and microeukaryote diversity along the estuarine continuum},
	journal = {Hydrobiologia},
	volume = {726},
	year = {2014},
	pages = {155-178},
	keywords = {18S rDNA clone libraries, Diversity, Estuarine gradient, Microeukaryotes, Microscopy, Phytoplankton, semiarid area},
	doi = {10.1007/s10750-013- 1761-9},
	author = {Bazin, Pauline and Fabien Jouenne and Deton-Cabanillas, Anne-Flore and Perez-Ruzafa, Angel and Beno{\^\i}t V{\'e}ron}
}
@article {3701,
	title = {Direct evidence for maternal inheritance of bacterial symbionts in small deep-sea clams (Bivalvia: Vesicomyidae).},
	journal = {Naturwissenschaften},
	volume = {101},
	year = {2014},
	month = {2014 May},
	pages = {373-83},
	abstract = {<p>Bacterial symbiont transmission is a key step in the renewal of the symbiotic interaction at each host generation, and different modes of transmission can be distinguished. Vesicomyidae are chemosynthetic bivalves from reducing habitats that rely on symbiosis with sulfur-oxidizing bacteria, in which two studies suggesting vertical transmission of symbionts have been published, both limited by the imaging techniques used. Using fluorescence in situ hybridization and transmission electron microscopy, we demonstrate that bacterial symbionts of Isorropodon bigoti, a gonochoristic Vesicomyidae from the Guiness cold seep site, occur intracellularly within female gametes at all stages of gametogenesis from germ cells to mature oocytes and in early postlarval stage. Symbionts are completely absent from the male gonad and gametes. This study confirms the transovarial transmission of symbionts in Vesicomyidae and extends it to the smaller species for which no data were previously available.</p>
},
	keywords = {Animals, Bacterial Physiological Phenomena, Bivalvia, Female, Germ Cells, Gonads, In Situ Hybridization, Fluorescence, Male, Microscopy, Electron, Transmission, Oceans and Seas, Symbiosis},
	issn = {1432-1904},
	doi = {10.1007/s00114-014-1165-3},
	author = {Szafranski, Kamil M and Sylvie M Gaudron and S{\'e}bastien Duperron}
}
@article {4126,
	title = {Diversity of cultivable fungi associated with Antarctic marine sponges and screening for their antimicrobial, antitumoral and antioxidant potential.},
	journal = {World J Microbiol Biotechnol},
	volume = {30},
	year = {2014},
	month = {2014 Jan},
	pages = {65-76},
	abstract = {<p>The diversity of sponge-associated fungi has been poorly investigated in remote geographical areas like Antarctica. In this study, 101 phenotypically different fungal isolates were obtained from 11 sponge samples collected in King George Island, Antarctica. The analysis of ITS sequences revealed that they belong to the phylum Ascomycota. Sixty-five isolates belong to the genera Geomyces, Penicillium, Epicoccum, Pseudeurotium, Thelebolus, Cladosporium, Aspergillus, Aureobasidium, Phoma, and Trichocladium but 36 isolates could not be identified at genus level. In order to estimate the potential of these isolates as producers of interesting bioactivities, antimicrobial, antitumoral and antioxidant activities of fungal culture extracts were assayed. Around 51\% of the extracts, mainly from the genus Geomyces and non identified relatives, showed antimicrobial activity against some of the bacteria tested. On the other hand, around 42\% of the extracts showed potent antitumoral activity, Geomyces sp. having the best performance. Finally, the potential of the isolated fungi as producers of antioxidant activity seems to be moderate. Our results suggest that fungi associated with Antarctic sponges, particularly Geomyces, would be valuable sources of antimicrobial and antitumoral compounds. To our knowledge, this is the first report describing the biodiversity and the metabolic potential of fungi associated with Antarctic marine sponges.</p>
},
	keywords = {Animals, Antarctic Regions, Anti-Bacterial Agents, Antineoplastic Agents, Antioxidants, Ascomycota, DNA, Ribosomal Spacer, Porifera, Sequence Analysis, DNA},
	issn = {1573-0972},
	doi = {10.1007/s11274-013-1418-x},
	author = {Henr{\'\i}quez, Marlene and Vergara, Karen and Norambuena, Javiera and Beiza, Andrea and Maza, Felipe and Ubilla, Pamela and Araya, Ivanna and Ch{\'a}vez, Renato and San-Mart{\'\i}n, Aurelio and Darias, Jos{\'e} and Darias, Maria and Vaca, Inmaculada}
}
@article {4125,
	title = {The effect of dietary oxidized lipid levels on growth performance, antioxidant enzyme activities, intestinal lipid deposition and skeletogenesis in Senegalese sole (Solea senegalensis) larvae},
	journal = {Aquaculture Nutrition},
	volume = {20},
	year = {2014},
	pages = {692{\textendash}711},
	abstract = {<p>Fish tissues, particularly rich in n-3 PUFA, are prone to lipid peroxidation that can damage cellular membranes, cause severe lesions and subsequently incidences of disease and mortality. However, fish possess antioxidant defences, such as vitamin E (VE) and antioxidant enzymes, to protect them against oxidative damage. This study investigated the effects of an increasing gradient of oxidized dietary lipid on the survival, growth performance, skeletogenesis and antioxidant defensive processes occurring in Senegalese sole (Solea senegalensis) larvae. Four groups of fish were fed live prey enriched with experimental emulsions containing an increasing gradient of oxidized oil: non-oxidized, NO+VE, 34.5\&nbsp;nmol MDA g-1 w.w.; mildly oxidized, MO+VE, 43.1\&nbsp;nmol MDA g-1 w.w.; highly oxidized, HO+VE, 63.3\&nbsp;nmol MDA g-1 w.w. and highly oxidized without VE, HO-VE, 78.8\&nbsp;nmol MDA g-1 w.w. The oxidation levels increased in enriched rotifers following the oxidation gradient of the emulsions, but were not affected in enriched Artemia metanauplii. The oxidation status of Senegalese sole larvae increased during development, but this was not related to the dietary treatments. The increasing dietary oxidation levels did not affect the fatty acid profile, survival, growth performance and metamorphosis processes of sole larvae. Senegalese sole seem to activate antioxidant defence mechanisms in response to the increasing amounts of dietary peroxidized lipids, in a manner efficiently enough to prevent detection of any alterations of these physiological processes. Antioxidant systems and detoxification mechanisms appeared to occur through the consumption of dietary α-tocopherol, the activation of the antioxidant enzymes (catalase, superoxide dismutase, glutathione S-transferase, glutathione reductase) and the retention of oxidized fat in the intestinal enterocytes for detoxification prior to their utilization. However, fish fed the highest oxidized diet presented a reduction in bone mineralization, but lower incidence of deformities in the vertebral and caudal regions than fish fed the other diets. This study exemplifies the importance of rearing Senegalese sole larvae on non-oxidized diets during the early larval development to avoid detrimental consequences in older fish, most notably in the process of skeletogenesis.</p>
},
	keywords = {antioxidant enzymes, lipid peroxidation, live prey enrichment, skeletogenesis, Solea senegalensis larvae, vitamin E},
	issn = {1365-2095},
	doi = {10.1111/anu.12123},
	url = {http://dx.doi.org/10.1111/anu.12123},
	author = {Boglino, A and Darias, Maria and Est{\'e}vez, A and Andree, K B and Sarasquete, Carmen and Ortiz-Delgado, Juan Bosco and Sol{\'e}, M and Gisbert, E}
}
@article {3511,
	title = {Effects of acute exposures to mecoprop, mecoprop-p and their biodegradation product (2-MCP) on the larval stages of the Pacific oyster, Crassostrea gigas.},
	journal = {Aquat Toxicol},
	volume = {146},
	year = {2014},
	month = {2014 Jan},
	pages = {165-75},
	abstract = {<p>Studies have shown that pesticides are sometimes detected at rather high levels in seawater and it has been suggested that these chemical compounds could act as additional stress factor for oysters cultured in coastal environments. The effects of pesticides on marine molluscs could be particularly harmful in the early stages which correspond to critical life stages. This study aimed to assess the effects of mecoprop, mecoprop-p and their degradation compound 2-methyl-4-chlorophenol on two larval stages of Crassostrea gigas. Embryotoxic effects were assessed on veliger larvae after 36 h exposures, and both percentages of normal larvae and types of abnormalities were taken into account. The effects of the three substances were evaluated on 21-day-old pediveliger larvae by calculating metamorphosis rates after 24h exposures. The results of the embryotoxicity assay indicated that 2-methyl-4-chlorophenol was more toxic (EC50: 10.81 mg L(-1)) than its parent compounds (EC50 mecoprop: 42.55 mg L(-1); EC50 mecoprop-p: 78.85 mg L(-1)). Mecoprop in particular injured shell formation with an increase of shell abnormalities following herbicide concentrations. The active substances were not toxic to metamorphosis processes, but 2-MCP was revealed to be more toxic to the success of metamorphosis (EC50: 7.20 mg L(-1)) than to embryo-larval development. However, the toxic concentrations were several orders of magnitude higher than environmental concentrations.</p>
},
	keywords = {2-Methyl-4-chlorophenoxyacetic Acid, Animals, Chlorophenols, Crassostrea, Embryo, Nonmammalian, Larva, Metamorphosis, Biological, Water Pollutants, Chemical},
	issn = {1879-1514},
	doi = {10.1016/j.aquatox.2013.11.008},
	author = {Mottier, A and Kientz-Bouchart, Val{\'e}rie and Dubreule, Christelle and Antoine Serpentini and Jean-Marc Lebel and Katherine Costil}
}
@article {4132,
	title = {The effects of dietary arachidonic acid on bone in flatfish larvae: the last but not the least of the essential fatty acids},
	journal = {Journal of Applied Ichthyology},
	volume = {30},
	year = {2014},
	pages = {643{\textendash}651},
	abstract = {<p>Flatfish can provide a reliable model to study developmental disorders in bone tissues occurring during morphogenesis in response to nutritional imbalances. To date, most studies dealing with the effect of dietary essential fatty acids (EFA) on skeletogenesis in fish have focused their investigation on the role of docohexanoic (22:6n-3, DHA) and eicosapentaenoic (20:5n{\textendash}3, EPA) acids, but only a few have focused on investigating the effects of arachidonic acid (20:4n{\textendash}6, ARA) on bone during fish larval development. Bone development and composition at larval stage have been demonstrated to be highly sensitive to dietary levels of EFA, in particular the EPA and ARA acids, both precursors for highly bioactive eicosanoids presenting opposite effects on bone metabolism. Since fish are not able to synthesize EFA, they need to obtain them from the diet. However, dietary imbalances in EPA and ARA in flatfish larvae may disrupt bone formation and osteoblast differentiation in skeletal tissues, leading to the incidence of skeletal deformities, reduced mineralization and problems of bone remodelling in the cranial region associated with impaired eye migration. These anomalies in skeletal structures are one of the most important factors that affect flatfish larval quality and hamper their production. Thus, we have reviewed the current state of knowledge about the effects of dietary ARA contents on skeletogenesis in Senegalese sole (Solea senegalensis), one of the main flatfish species cultured in Europe. Their larval quality still suffers for a high incidence of skeletal anomalies induced by dietary imbalances during metamorphosis.</p>
},
	issn = {1439-0426},
	doi = {10.1111/jai.12511},
	url = {http://dx.doi.org/10.1111/jai.12511},
	author = {Boglino, A and Darias, Maria and Andree, K B and Est{\'e}vez, A and Gisbert, E}
}
@article {4133,
	title = {The effects of dietary arachidonic acid on Senegalese sole morphogenesis: A synthesis of recent findings},
	journal = {Aquaculture},
	volume = {432},
	year = {2014},
	pages = {443 - 452},
	abstract = {<p>Abstract In this study we evaluated the effects of high dietary arachidonic acid (ARA) levels on prostaglandin \{E2\} (PGE2) and \{E3\} (PGE3) production and their effect on two morphogenetic processes occurring during metamorphosis: the establishment of the juvenile pigmentation pattern and eye migration and remodeling of cranial bones. In this sense, Senegalese sole larvae were fed from 2 to 50 days post-hatch (dph) with live prey enriched with an experimental emulsion containing high levels of \{ARA\} (ARA-H; 10.2 and 7.1\% \{TFA\} in enriched rotifer and Artemia, respectively) versus a reference commercial enriching product (Algamac 3050{\textregistered}, AGM; 1.0 and 1.4\% \{TFA\} in enriched rotifer and Artemia, respectively). High dietary \{ARA\} levels did not affect larval growth performance at 50 dph, but significantly induced malpigmentation (81.4 {\textpm} 7.5\%, versus 0.9 {\textpm} 0.3\% in larvae fed the \{AGM\} diet). This malpigmentation was linked to the higher prostaglandin \{E2\} (PGE2) levels observed in pseudo-albino fish as compared to normally pigmented individuals. The \{PGE2\} levels were higher in normally pigmented specimens fed the ARA-H diet than in those fed the \{AGM\} diet. The effects of \{ARA\} on normally pigmented fish fed the \{AGM\} diet and pseudo-albino specimens fed the ARA-H diet were evaluated by means of the density of melanophores and the texture and image segmentation analyses in the dorsal skin of post-metamorphic fish. The skin of pseudo-albino specimens had a more uniform and homogeneous melanophore pattern than normally pigmented fish. Melanophores in pseudo-albino specimens were less abundant and not so aggregated in patches as they were in normally pigmented ones, whereas their shape differed (round vs. dendritic) suggesting their inability to disperse melanin. In addition, fish fed the ARA-H diet presented a higher percentage of cranial deformities (95.1 {\textpm} 1.5\%) than those fed the control diet (1.9 {\textpm} 1.9\%) that was significantly and negatively correlated with the incidence of normally-pigmented animals (R2 = - 0.88, P \&lt; 0.001). Cranial deformities in pseudo-albino fish were associated with an impaired migration of the eye from the ocular side (the right eye), whereas the left eye migrated from the blind side into the ocular side almost normally. The effects of high dietary \{ARA\} levels in the eye migration and cranial bone remodeling processes in post-metamorphic larvae were evaluated by means of the staining of cranial skeletal elements. Pseudo-albino fish showed higher interocular distance and head height than normally pigmented individuals, a different disposition of the eyes with regard to the vertebral column and mouth axes, and a distinct osteological development of some skeletal structures from the neuro- and splanchnocranium, in relation to high dietary \{ARA\} contents and high \{PGE2\} production. These results brought new information about possible nutritional forcing factors and physiological mechanisms of pigmentary disorders and impaired eye migration, which are current major bottlenecks in flatfish aquaculture.</p>
},
	keywords = {Skeletal deformities},
	issn = {0044-8486},
	doi = {http://dx.doi.org/10.1016/j.aquaculture.2014.05.007},
	url = {http://www.sciencedirect.com/science/article/pii/S0044848614002233},
	author = {Boglino, A and Wishkerman, A and Darias, Maria and de la Iglesia, P and Est{\'e}vez, A and Andree, K B and Gisbert, E}
}
@inbook {4149,
	title = {European Sea bass larval culture.},
	booktitle = {Biology of European Seabass.},
	year = {2014},
	pages = {162-206},
	publisher = {CRC Press},
	organization = {CRC Press},
	address = {Boca Raton},
	author = {Gisbert, E and Fern{\'a}ndez, Ignacio and Villamizar, N and Darias, Maria and Zambonino-Infante, J and Est{\'e}vez, A},
	editor = {S{\'a}nchez-V{\'a}zquez, F J and Mu{\~n}oz-Cueto, J A}
}
@article {Carpentier201486,
	title = {Feeding ecology of Liza spp. in a tidal flat: Evidence of the importance of primary production (biofilm) and associated meiofauna},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	note = {cited By 25},
	pages = {86-91},
	doi = {10.1016/j.seares.2013.10.007},
	url = {https://www.sciencedirect.com/science/article/pii/S1385110113002013},
	author = {Alexandre Carpentier and Como, S. and Christine Dupuy and Lefran{\c c}ois, C. and Eric Feunteun}
}
@article {3290,
	title = {Fish-AMAZBOL: a database on freshwater fishes of the Bolivian Amazon},
	journal = {Hyrobiologia},
	volume = {732},
	year = {2014},
	month = {07/2014},
	pages = {pp. 19-27},
	abstract = {The Bolivian part of the Amazon Basin contains a mega diverse and well-preserved fish fauna. Since the last decade, this fish fauna has received an increasing attention from scientists and the national authorities as fishes represent one of the most important sources of proteins for local human communities. However, this fish fauna still remains poorly documented. Here, we present a database for fishes from the Bolivian Amazon. To build the database, we conducted an extensive literature survey of native and non-native (exotic) fishes inhabiting all major sub-drainages of the Bolivian Amazon. The database, named Fish-AMAZBOL, contains species lists for 13 Amazonian hydrological units, covering 100\% of the Bolivian Amazon and approximately 65\% (722,137 km2) of the all territory. Fish-AMAZBOL includes 802 valid species, 12 of them being non-native, that have been checked for systematic reliability and consistency. To put this number in perspective, this represents around 14\% of the all Neotropical ichthyofauna and around 6\% of all strictly freshwater fishes inhabiting the planet. This database is currently the most comprehensive database of native and non-native fish species richness available so far for the Bolivian Amazon.},
	keywords = {Amazon River basin, Bolivia, Checklist, Freshwater fishes, Madera River, South America},
	doi = {10.1007/s10750-014-1841-5},
	url = {http://link.springer.com/article/10.1007/s10750-014-1841-5},
	author = {Carvajal-Vallejos, F M and R{\'e}my Bigorne and Zeballos Fernandez, Am{\'e}rica J. and Sarmiento, Jaime and Barrera Soraya and Yunoki, T and Marc Pouilly and Zubieta Jos{\'e} and De La Barra, Evans and Michel J{\'e}gu and Maldonado, Mabel and Van Damme, Paul and C{\'e}spedes, Ricardo and Thierry Oberdorff}
}
@article {3244,
	title = {Forecasted climate and land use changes, and protected areas: the contrasting case of spiders},
	journal = {Diversity and Distributions},
	volume = {20},
	year = {2014},
	pages = {686-697},
	keywords = {Arthropods, ensemble forecast, global changes, species distribution models, threatened species, uncertainty},
	doi = {10.1111/ddi.12191},
	author = {Leroy, Boris and Bellard, C{\'e}line and Dubos, Nicolas and Colliot, Arthur and Vasseur, Manon and Courtial, Cyril and Bakkenes, Michel and Canard, A and Fr{\'e}d{\'e}ric Ysnel}
}
@article {3395,
	title = {Functional characterization of a short neuropeptide F-related receptor in a lophotrochozoan, the mollusk Crassostrea gigas.},
	journal = {J Exp Biol},
	volume = {217},
	year = {2014},
	month = {2014 Aug 15},
	pages = {2974-82},
	abstract = {<p>Members of the short neuropeptide F (sNPF) family of peptides and their cognate receptors play key roles in a variety of physiological processes in arthropods. In silico screening of GigasDatabase, a specific expressed sequence tag database from the Pacific oyster Crassostrea gigas, resulted in the identification of a receptor (Cg-sNPFR-like) phylogenetically closely related to sNPF receptors (sNPFRs) of insects. A reverse endocrinology approach was undertaken to identify the peptide ligand(s) of this orphan receptor. Though structurally distinct from insect sNPFs, three RFamide peptides derived from the same precursor, i.e. GSLFRFamide, SSLFRFamide and GALFRFamide, specifically activate the receptor in a dose-dependent manner, with respective EC50 values (half-maximal effective concentrations) of 1.1, 2.1 and 4.1 μmol l(-1). We found that both Cg-sNPFR-like receptor and LFRFamide encoding transcripts are expressed in the oyster central nervous system and in other tissues as well, albeit at lower levels. Mass spectrometry analysis confirmed the wide distribution of LFRFamide mature peptides in several central and peripheral tissues. The Cg-sNPFR-like receptor was more abundantly expressed in ganglia of females than of males, and upregulated in starved oysters. In the gonad area, highest receptor gene expression occurred at the start of gametogenesis, when storage activity is maximal. Our results suggest that signaling of LFRFamide peptides through the Cg-sNPFR-like receptor might play a role in the coordination of nutrition, energy storage and metabolism in C. gigas, possibly by promoting storage at the expense of reproduction.</p>
},
	issn = {1477-9145},
	doi = {10.1242/jeb.104067},
	author = {Bigot, Laetitia and Beets, Isabel and Marie-Pierre Dubos and Boudry, Pierre and Schoofs, Liliane and Pascal Favrel}
}
@article {3445,
	title = {Genetic structure in the Amazonian catfish Brachyplatystoma rousseauxii: influence of life history strategies.},
	journal = {Genetica},
	volume = {142},
	year = {2014},
	month = {2014 Aug},
	pages = {323-36},
	abstract = {<p>The Dorado or Plateado (Gilded catfish) Brachyplatystoma rousseauxii (Pimelodidae, Siluriformes) is a commercially valuable migratory catfish performing the largest migration in freshwaters: from the Amazonian headwaters in the Andean foothills (breeding area) to the Amazon estuary (nursery area). In spite of its importance to inform management and conservation efforts, the genetic variability of this species has only recently begun to be studied. The aim of the present work was to determine the population genetic structure of B. rousseauxii in two regions: the Upper Madera Basin (five locations in the Bolivian Amazon) and the Western Amazon Basin (one regional sample from the Uyucal{\'\i}-Napo-Mara{\~n}on-Amazon basin, Peru). Length polymorphism at nine microsatellite loci (284 individuals) was used to determine genetic variability and to identify the most probable panmictic units (using a Bayesian approach), after a significant departure from Hardy-Weinberg equilibrium was observed in the overall dataset (Western Amazon\&nbsp;+\&nbsp;Upper Madera). Bayesian analyses revealed at least three clusters in admixture in the five locations sampled in the Bolivian Amazon, whereas only two of these clusters were observed in the Western Amazon. Considering the migratory behaviour of B. rousseauxii, different life history strategies, including homing, are proposed to explain the cluster distribution. Our results are discussed in the light of the numerous threats to the species survival in the Madera basin, in particular dam and reservoir construction.</p>
},
	issn = {1573-6857},
	doi = {10.1007/s10709-014-9777-2},
	author = {Carvajal-Vallejos, F M and Fabrice Duponchelle and Desmarais, E and Cerqueira, F and Sophie Qu{\'e}rouil and Jesus Nu{\~n}ez-Rodriguez and Garc{\'\i}a, C and Renno, J-F}
}
@article {3252,
	title = {Global imprint of historical connectivity on freshwater fish biodiversity.},
	journal = {Ecol Lett},
	volume = {17},
	year = {2014},
	month = {2014 Sep},
	pages = {1130-40},
	abstract = {<p>The relative importance of contemporary and historical processes is central for understanding biodiversity patterns. While several studies show that past conditions can partly explain the current biodiversity patterns, the role of history remains elusive. We reconstructed palaeo-drainage basins under lower sea level conditions (Last Glacial Maximum) to test whether the historical connectivity between basins left an imprint on the global patterns of freshwater fish biodiversity. After controlling for contemporary and past environmental conditions, we found that palaeo-connected basins displayed greater species richness but lower levels of endemism and beta diversity than did palaeo-disconnected basins. Palaeo-connected basins exhibited shallower distance decay of compositional similarity, suggesting that palaeo-river connections favoured the exchange of fish species. Finally, we found that a longer period of palaeo-connection resulted in lower levels of beta diversity. These findings reveal the first unambiguous results of the role played by history in explaining the global contemporary patterns of biodiversity.</p>
},
	keywords = {Animals, Biodiversity, Environment, Fishes, Fresh Water, Models, Biological},
	issn = {1461-0248},
	doi = {10.1111/ele.12319},
	author = {Dias, Murilo S and Thierry Oberdorff and Bernard Hugueny and Leprieur, Fabien and J{\'e}z{\'e}quel, C{\'e}line and Cornu, Jean-Fran{\c c}ois and Brosse, S{\'e}bastien and Grenouillet, Gael and Pablo Tedesco}
}
@article {3251,
	title = {Ground-dwelling arthropod community across braided landscape mosaics: a Mediterraen perspective},
	journal = {Freshwater Biology},
	volume = {59},
	year = {2014},
	pages = {1308-1322},
	keywords = {beta-diversity, chronosequence, floodplain, Lycosidae, natural flow regime},
	doi = {10.1111/fwb.12350},
	author = {Datry, Thibault and Corti, Roland and Belletti, Barbara and Pi{\'e}gay, Herv{\'e}}
}
@article {3250,
	title = {Histological development of the digestive system of the Amazonian pimelodid catfish Pseudoplatystoma punctifer.},
	journal = {Animal},
	volume = {8},
	year = {2014},
	month = {2014 Nov},
	pages = {1765-76},
	abstract = {<p>The organogenesis of the digestive system was described in the Amazonian pimelodid catfish species Pseudoplatystoma punctifer from hatching (3.5 mm total length, TL) to 41 days post-fertilization (dpf) (58.1 mm TL) reared at 28{\textdegree}C. Newly hatched larvae showed a simple digestive tract, which appeared as a straight undifferentiated and unfolded tube lined by a single layer of columnar epithelial cells (future enterocytes). During the endogenous feeding period, comprised between 20 and 96 h post-fertilization (3.5 to 6.1 mm TL), the larval digestive system experienced a fast transformation with the almost complete development and differentiation of most of digestive organs (buccopahrynx, oesophagus, intestine, liver and exocrine pancreas). Yolk reserves were not completely depleted at the onset of exogenous feeding (4 dpf, 6.1 mm TL), and a period of mixed nutrition was observed up to 6 to 7 dpf (6.8 to 7.3 mm TL) when yolk was definitively exhausted. The stomach was the organ that latest achieved its complete differentiation, characterized by the development of abundant gastric glands in the fundic stomach between 10 and 15 dpf (10.9 to 15.8 mm TL) and the formation of the pyloric sphincter at the junction of the pyloric stomach and the anterior intestine at 15 dpf (15.8 mm TL). The above-mentioned morphological and histological features observed suggested the achievement of a digestive system characteristic of P. punctifer juveniles and adults. The ontogeny of the digestive system in P. punctifer followed the same general pattern as in most Siluriform species so far, although some species-specific differences in the timing of differentiation of several digestive structures were noted, which might be related to different reproductive guilds, egg and larval size or even different larval rearing practices. According to present findings on the histological development of the digestive system in P. punctifer, some recommendations regarding the rearing practices of this species are also provided in order to improve the actual larval rearing techniques of this fast-growing Neotropical catfish species.</p>
},
	issn = {1751-732X},
	doi = {10.1017/S1751731114001797},
	author = {Gisbert, E and Moreira, C and Castro-Ruiz, D and Ozt{\"u}rk, S and Fern{\'a}ndez, C and Gilles, S and Jesus Nu{\~n}ez-Rodriguez and Fabrice Duponchelle and Salvador Tello and Renno, J F and Garc{\'\i}a-D{\'a}vila, C and Darias, Maria}
}
@article {Saint-B{\'e}at2014144,
	title = {How does the resuspension of the biofilm alter the functioning of the benthos-pelagos coupled food web of a bare mudflat in Marennes-Ol{\'e}ron Bay (NE Atlantic)?},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	note = {cited By 17},
	pages = {144-157},
	doi = {10.1016/j.seares.2014.02.003},
	url = {https://www.sciencedirect.com/science/article/pii/S138511011400029X},
	author = {Saint-B{\'e}at, B. and Christine Dupuy and Agogu{\'e}, H. and Alexandre Carpentier and Chalumeau, J. and Como, S. and David, V. and De Crignis, M. and Duch{\^e}ne, J.-C. and Fontaine, C. and Eric Feunteun and Katell Guizien and Hartmann, H. and Lavaud, J. and S{\'e}bastien Lefebvre and Lefran{\c c}ois, C. and Mallet, C. and Montani{\'e}, H. and Mouget, J.-L. and Francis Orvain and Ory, P. and Pascal, P.-Y. and Radenac, G. and Richard, P. and V{\'e}zina, A.F. and Nathalie Niquil}
}
@article {5051,
	title = {How does the resuspension of the biofilm alter the functioning of the benthos{\textendash}pelagos coupled food web of a bare mudflat in Marennes-Ol{\'e}ron Bay (NE Atlantic)?},
	journal = {Journal of sea research},
	volume = {92},
	year = {2014},
	pages = {144{\textendash}157},
	author = {Saint-B{\'e}at, B and Christine Dupuy and Agogue, Helene and Alexandre Carpentier and Chalumeau, J and Como, Serena and David, Val{\'e}rie and Margot de Crignis and Duch{\^e}ne, J C and Fontaine, C and others}
}
@article {4108,
	title = {An integrated closed system for fish-plankton aquaculture in Amazonian fresh water.},
	journal = {Animal},
	volume = {8},
	year = {2014},
	month = {2014 Aug},
	pages = {1319-28},
	abstract = {<p>A prototype of an integrated closed system for fish-plankton aquaculture was developed in Iquitos (Peruvian Amazonia) in order to cultivate the Tiger Catfish, Pseudoplatystoma punctifer (Castelnau, 1855). This freshwater recirculating system consisted of two linked sewage tanks with an intensive rearing unit (a cage) for P. punctifer placed in the first, and with a fish-plankton trophic chain replacing the filters commonly used in clear water closed systems. Detritivorous and zooplanktivorous fishes (Loricariidae and Cichlidae), maintained without external feeding in the sewage volume, mineralized organic matter and permitted the stabilization of the phytoplankton biomass. Water exchange and organic waste discharge were not necessary. In this paper we describe the processes undertaken to equilibrate this ecosystem: first the elimination of an un-adapted spiny alga, Golenkinia sp., whose proliferation was favored by the presence of a small rotifer, Trichocerca sp., and second the control of this rotifer proliferation via the introduction of two cichlid species, Acaronia nassa Heckel, 1840 and Satanoperca jurupari Heckel, 1840, in the sewage part. This favored some development of the green algae Nannochloris sp. and Chlorella sp. At that time we took the opportunity to begin a 3-month rearing test of P. punctifer. The mean specific growth rate and feed conversion ratio (FCR) of P. punctifer were 1.43 and 1.27, respectively, and the global FCR, including fish in the sewage part, was 1.08. This system has proven to be suitable for growing P. punctifer juveniles out to adult, and provides several practical advantages compared with traditional recirculating clear water systems, which use a combination of mechanical and biological filters and require periodic waste removal, leading to water and organic matter losses.</p>
},
	issn = {1751-732X},
	doi = {10.1017/S1751731114001165},
	author = {Gilles, S and Ismi{\~n}o, R and S{\'a}nchez, H and Frank David and Jesus Nu{\~n}ez-Rodriguez and Dugu{\'e}, R and Darias, Maria and R{\"o}mer, U}
}
@article {3631,
	title = {Looking for the bird Kiss: evolutionary scenario in sauropsids.},
	journal = {BMC Evol Biol},
	volume = {14},
	year = {2014},
	month = {2014},
	pages = {30},
	abstract = {<p><strong>BACKGROUND: </strong>The neuropeptide Kiss and its receptor KissR are key-actors in the brain control of reproduction in mammals, where they are responsible for the stimulation of the activity of GnRH neurones. Investigation in other vertebrates revealed up to 3 Kiss and 4 KissR paralogs, originating from the two rounds of whole genome duplication in early vertebrates. In contrast, the absence of Kiss and KissR has been suggested in birds, as no homologs of these genes could be found in current genomic databases. This study aims at addressing the question of the existence, from an evolutionary perspective, of the Kisspeptin system in birds. It provides the first large-scale investigation of the Kisspeptin system in the sauropsid lineage, including ophidian, chelonian, crocodilian, and avian lineages.</p>

<p><strong>RESULTS: </strong>Sauropsid Kiss and KissR genes were predicted from multiple genome and transcriptome databases by TBLASTN. Phylogenetic and syntenic analyses were performed to classify predicted sauropsid Kiss and KissR genes and to re-construct the evolutionary scenarios of both gene families across the sauropsid radiation.Genome search, phylogenetic and synteny analyses, demonstrated the presence of two Kiss genes (Kiss1 and Kiss2 types) and of two KissR genes (KissR1 and KissR4 types) in the sauropsid lineage. These four genes, also present in the mammalian lineage, would have been inherited from their common amniote ancestor. In contrast, synteny analyses supported that the other Kiss and KissR paralogs are missing in sauropsids as in mammals, indicating their absence in the amniote lineage. Among sauropsids, in the avian lineage, we demonstrated the existence of a Kiss2-like gene in three bird genomes. The divergence of these avian Kiss2-like sequences from those of other vertebrates, as well as their absence in the genomes of some other birds, revealed the processes of Kiss2 gene degeneration and loss in the avian lineage.</p>

<p><strong>CONCLUSION: </strong>These findings contribute to trace back the evolutionary history of the Kisspeptin system in amniotes and sauropsids, and provide the first molecular evidence of the existence and fate of a Kiss gene in birds.</p>
},
	keywords = {Amino Acid Sequence, Animals, Avian Proteins, Biological Evolution, Birds, Humans, Kisspeptins, Molecular Sequence Data, Phylogeny, Receptors, G-Protein-Coupled, Reptiles, Sequence Alignment, Synteny},
	issn = {1471-2148},
	doi = {10.1186/1471-2148-14-30},
	author = {Pasquier, J{\'e}r{\'e}my and Anne-Gaelle Lafont and Karine Rousseau and Qu{\'e}rat, Bruno and Chemineau, Philippe and Sylvie Dufour}
}
@article {3216,
	title = {A microbiological and biogeochemical investigation of the cold seep tubeworm <i>Escarpia southwardae</i> (Annelida: Siboglinidae): Symbiosis and trace element composition of the tube},
	journal = {Deep-Sea Research Part I - Oceanographic Research Papers},
	year = {2014},
	doi = {10.1016/J.dsr.2014.05.006},
	author = {S{\'e}bastien Duperron and Sylvie M Gaudron and Lema{\^\i}tre, Nolwenn and Bayon, Germain}
}
@article {3211,
	title = {Molecular evolution of GPCRs: Kisspeptin/kisspeptin receptors.},
	journal = {J. Mol. Endocrinol.},
	volume = {52},
	year = {2014},
	pages = {101-117},
	author = {Pasquier, J and Kamech, Nedia and Anne-Gaelle Lafont and H Vaudry and Karine Rousseau and Sylvie Dufour}
}
@article {3131,
	title = {Morphological and molecular evidence of three species of pikes <i>Esox</i> spp. (Actinopterygii, Esocidae) in France, including the description of a new species},
	journal = {Comptes Rendus Biologies},
	volume = {337},
	year = {2014},
	pages = {521-534},
	abstract = {<p>This integrative taxonomy study of French pikes compares morphological characters and molecular sequence data (mitochondrial COI and nuclear Plagl2 genes). In addition to the expected <em>E.\&nbsp;lucius</em>, DNA sequences and morphology both support a new species in France, <em>E.\&nbsp;aquitanicus</em> sp. nov. from the Charente to the Adour drainages. It is characterized by a color pattern of sides with narrow 1{\textendash}1.5-scale-wide oblique vertical bands, conferring it a marbled coat, a snout only 0.9 times larger than the postorbital length, an anal fin basis 1.1{\textendash}1.2 times larger than the caudal peduncle length, 101 to 121 lateral scales, 53 to 57 vertebrae, as well as 24 diagnostic sites in the COI gene and 3 in the Plagl2 gene. Partial COI sequences (131bp) from modern and historical specimens indicate also the presence of <em>E.\&nbsp;cisalpinus</em> and <em>E.\&nbsp;lucius</em> during the 19th century in Lake Geneva. Morphological and molecular data points to a possible hybridization between <em>E.\&nbsp;lucius</em> with both other local pike species, representing a risk for them. Their endangerment status should be evaluated rapidly in order to take conservation measures.</p>
},
	keywords = {Cytochrome c oxidase subunit 1, Esox aquitanicus, Esox cisalpinus, France, Integrative taxonomy, New species, Pleiomorphic adenoma gene-like 2},
	issn = {16310691},
	doi = {10.1016/j.crvi.2014.07.002},
	author = {Denys, Ga{\"e}l and Dettai, Agn{\`e}s and Persat, Henri and M{\'e}lyne Hautecoeur and Philippe Keith}
}
@article {3636,
	title = {Multiple thyrotropin β-subunit and thyrotropin receptor-related genes arose during vertebrate evolution.},
	journal = {PLoS One},
	volume = {9},
	year = {2014},
	month = {2014},
	pages = {e111361},
	abstract = {<p>Thyroid-stimulating hormone (TSH) is composed of a specific β subunit and an α subunit that is shared with the two pituitary gonadotropins. The three β subunits derive from a common ancestral gene through two genome duplications (1R and 2R) that took place before the radiation of vertebrates. Analysis of genomic data from phylogenetically relevant species allowed us to identify an additional Tshβ subunit-related gene that was generated through 2R. This gene, named Tshβ2, present in cartilaginous fish, little skate and elephant shark, and in early lobe-finned fish, coelacanth and lungfish, was lost in ray-finned fish and tetrapods. The absence of a second type of TSH receptor (Tshr) gene in these species suggests that both TSHs act through the same receptor. A novel Tshβ sister gene, named Tshβ3, was generated through the third genomic duplication (3R) that occurred early in the teleost lineage. Tshβ3 is present in most teleost groups but was lostin tedraodontiforms. The 3R also generated a second Tshr, named Tshrb. Interestingly, the new Tshrb was translocated from its original chromosomic position after the emergence of eels and was then maintained in its new position. Tshrb was lost in tetraodontiforms and in ostariophysians including zebrafish although the latter species have two TSHs, suggesting that TSHRb may be dispensable. The tissue distribution of duplicated Tshβs and Tshrs was studied in the European eel. The endocrine thyrotropic function in the eel would be essentially mediated by the classical Tshβ and Tshra, which are mainly expressed in the pituitary and thyroid, respectively. Tshβ3 and Tshrb showed a similar distribution pattern in the brain, pituitary, ovary and adipose tissue, suggesting a possible paracrine/autocrine mode of action in these non-thyroidal tissues. Further studies will be needed to determine the binding specificity of the two receptors and how these two TSH systems are interrelated.</p>
},
	issn = {1932-6203},
	doi = {10.1371/journal.pone.0111361},
	author = {Gersende Maugars and Sylvie Dufour and Cohen-Tannoudji, Jo{\"e}lle and Qu{\'e}rat, Bruno}
}
@article {3487,
	title = {Multiscale patterns in the diversity and organization of benthic intertidal fauna among French Atlantic estuaries},
	journal = {Journal of Sea Research},
	volume = {90},
	year = {2014},
	month = {07/2014},
	pages = {95 - 110},
	abstract = {<p>Based on a parallel sampling conducted during autumn 2008, a comparative study of the intertidal benthic macrofauna among 10 estuarine systems located along the Channel and Atlantic coasts of France was performed in order to assess the level of fauna similarity among these sites and to identify possible environmental factors involved in the observed pattern at both large (among sites) and smaller (benthic assemblages) scales. More precisely this study focused on unraveling the observed pattern of intertidal benthic fauna composition and diversity observed at among-site scale by exploring both biotic and abiotic factors acting at the among- and within-site scales. Results showed a limited level of similarity at the among-site level in terms of intertidal benthic fauna composition and diversity. The observed pattern did not fit with existing transitional water classification methods based on fish or benthic assemblages developed in the frame of the European Water Framework Directive (WFD). More particularly, the coastal plain estuaries displayed higher among-site similarity compared to ria systems. These coastal plain estuaries were characterized by higher influence of river discharge, lower communication with the ocean and high suspended particulate matter levels. On the other hand, the ria-type systems were more dissimilar and different from the coastal plain estuaries. The level of similarity among estuaries was mainly linked to the relative extent of the intertidal {\textquotedblleft}Scrobicularia plana{\textendash}Cerastoderma edule{\textquotedblright} and {\textquotedblleft}Tellina tenuis{\textquotedblright} or {\textquotedblleft}Venus{\textquotedblright} communities as a possible consequence of salinity regime, suspended matter concentrations and fine particles supply with consequences on the trophic functioning, structure and organization of benthic fauna. Despite biogeographical patterns, the results also suggest that, in the context of the WFD, these estuaries should only be compared on the basis of the most common intertidal habitat occurring throughout all estuarine systems and that the \{EUNIS\} biotope classification might be used for this purpose. In addition, an original inverse relation between γ-diversity and area was shown; however, its relevance might be questioned.</p>
},
	keywords = {Diversity, Estuaries, Macrozoobenthos, Structuring Factors, WFD},
	issn = {1385-1101},
	doi = {http://dx.doi.org/10.1016/j.seares.2014.02.014},
	url = {http://www.sciencedirect.com/science/article/pii/S1385110114000495},
	author = {Hugues Blanchet and Beno{\^\i}t Gouillieux and Sandrine Alizier and Jean-Michel Amouroux and Guy Bachelet and Anne-Laure Barill{\'e} and Jean-Claude Dauvin and Xavier de Montaudouin and Val{\'e}rie Derolez and Nicolas Desroy and Jacques Grall and Antoine Gr{\'e}mare and Pascal Hacquebart and J{\'e}r{\^o}me Jourde and C{\'e}line Labrune and Nicolas Lavesque and Antoine Meirland and Thiebaut Nebout and Fr{\'e}d{\'e}ric Olivier and Corine Pelaprat and Thierry Ruellet and Pierre-Guy Sauriau and S{\'e}bastien Thorin}
}
@article {3639,
	title = {Neuroendocrine gene expression reveals a decrease in dopamine D2B receptor with no changes in GnRH system during prepubertal metamorphosis of silvering in wild Japanese eel.},
	journal = {Gen Comp Endocrinol},
	volume = {206},
	year = {2014},
	month = {2014 Sep 15},
	pages = {8-15},
	abstract = {<p>Silvering is a prepubertal metamorphosis preparing the eel to the oceanic reproductive migration. A moderate gonad development occurs during this metamorphosis from the sedentary yellow stage to the migratory silver stage. The aim of this study was to elucidate the molecular aspects of various endocrine parameters of BPG axis at different ovarian developmental stages in wild yellow and silver female Japanese eels. The GSI of the sampled female eels ranged between 0.18 and 2.3\%, corresponding to yellow, pre-silver and silver stages. Gonad histology showed changes from previtellogenic oocytes in yellow eels to early vitellogenic oocytes in silver eels. Both serum E2 and T concentrations significantly increased with ovarian development indicating a significant activation of steroidogenesis during silvering. In agreement with previous studies, significant increases in pituitary gonadotropin beta subunits FSH-β and LH-β transcripts were also measured by qPCR, supporting that the activation of pituitary gonadotropin expression is likely responsible for the significant ovarian development observed during silvering. We investigated for the first time the possible brain neuroendocrine mechanisms involved in the activation of the pituitary gonadotropic function during silvering. By analyzing the expression of genes representative of the stimulatory GnRH control and the inhibitory dopaminergic control. The transcript levels of mGnRH and the three GnRH receptors did not change in the brain and pituitary between yellow and silver stages, suggesting that gene expression of the GnRH system is not significantly activated during silvering. The brain transcript levels of tyrosine hydroxylase, limiting enzyme of DA synthesis did not change during silvering, indicating that the DA synthesis activity was maintained. In contrast, a significant decrease in DA-D2B receptor expression in the forebrain and pituitary was observed, with no changes in DA-D2A receptor. The decrease in the pituitary expression of DA-D2BR during silvering would allow a reduced inhibitory effect of DA. We may raise the hypothesis that this regulation of D2BR gene expression is one of the neuroendocrine mechanisms involved in the slight activation of the pituitary gonadotropin and gonadal activity that occur at silvering.</p>
},
	keywords = {Animals, Cells, Cultured, Dopamine, Eels, Female, Follicle Stimulating Hormone, beta Subunit, Gene Expression Regulation, Gonadotropin-Releasing Hormone, Immunoblotting, Immunoenzyme Techniques, Luteinizing Hormone, beta Subunit, Metamorphosis, Biological, Neurosecretory Systems, Oocytes, Ovary, Real-Time Polymerase Chain Reaction, Receptors, Dopamine D2, Reproduction, Reverse Transcriptase Polymerase Chain Reaction, RNA, Messenger, Sexual Maturation, Skin Pigmentation},
	issn = {1095-6840},
	doi = {10.1016/j.ygcen.2014.08.001},
	author = {Jeng, Shan-Ru and Wen-Shiun Yueh and Pen, Yi-Ting and Lee, Yan-Horn and Chen, Guan-Ru and Sylvie Dufour and Chang, Ching-Fong}
}
@article {3486,
	title = {New Sicydiinae phylogeny (Teleostei: Gobioidei) inferred from mitochondrial and nuclear genes: insights on systematics and ancestral areas.},
	journal = {Mol Phylogenet Evol},
	volume = {70},
	year = {2014},
	month = {2014 Jan},
	pages = {260-71},
	abstract = {<p>The Sicydiinae subfamily (Teleostei: Gobioidei) is the biggest contributor to the diversity of fish communities in river systems of tropical islands. These species are found in the Indo-Pacific area, the Caribbean region and West Africa. They spawn in freshwater, their planktotrophic larvae drift downstream to the sea where they develop, before returning to the rivers to grow and reproduce. Hence, they are called amphidromous. Their phylogeny has been explored using a total of 3545 sites from 5 molecular markers (mitochondrial DNA: 16S rDNA, cytochrome oxidase I, cytochrome b; nuclear DNA: rhodopsin gene and a nuclear marker specially developed for this study, the interferon regulatory factor 2 binding protein 1-IRF2PB1). Sequences were obtained for 59 Sicydiinae specimens of 9 known genera. The Bayesian and maximum likelihood analyses support the monophyly of the subfamily as well as the monophylyof all genera except Sicydium, which is paraphyletic. Five major clades were identified within this subfamily. One clade contained the genus Stiphodon. Another clade contained Sicyopterus, Sicydium and Parasicydium with Sicyopterus as sister genus of Sicydium. The non-monophyly of Sicydium subclade, because it includes the monotypic genus Parasicydium, challenged the validity of Parasicydium genus. Ancestral area reconstruction showed that the subfamily emerged in the Central West Pacific region implying that previous hypotheses proposing a dispersal route for Sicydiinae into the Atlantic Ocean are unsupported by the present analysis. Our results suggest that the hypotheses for the dispersal route of the genus Sicydium should be reconsidered.</p>
},
	keywords = {Animals, Bayes Theorem, Cell Nucleus, Cytochromes b, DNA, Mitochondrial, DNA, Ribosomal, Electron Transport Complex IV, Evolution, Molecular, Female, Mitochondria, Perciformes, Phylogeny, Sequence Analysis, DNA},
	issn = {1095-9513},
	doi = {10.1016/j.ympev.2013.09.026},
	author = {Taillebois, Laura and Castelin, Magalie and Clara Lord and Chabarria, Ryan and Dettai, Agn{\`e}s and Philippe Keith}
}
@article {3273,
	title = {Phytoplankton diversity and community composition along the estuarine gradient of a temperate macrotidal ecosystem: combined morphological and molecular approaches.},
	journal = {PLoS One},
	volume = {9},
	year = {2014},
	month = {2014},
	pages = {e94110},
	abstract = {<p>Microscopical and molecular analyses were used to investigate the diversity and spatial community structure of spring phytoplankton all along the estuarine gradient in a macrotidal ecosystem, the Baie des Veys (eastern English Channel). Taxa distribution at high tide in the water column appeared to be mainly driven by the tidal force which superimposed on the natural salinity gradient, resulting in a two-layer flow within the channel. Lowest taxa richness and abundance were found in the bay where Teleaulax-like cryptophytes dominated. A shift in species composition occurred towards the mouth of the river, with the diatom Asterionellopsis glacialis dramatically accumulating in the bottom waters of the upstream brackish reach. Small thalassiosiroid diatoms dominated the upper layer river community, where taxa richness was higher. Through the construction of partial 18S rDNA clone libraries, the microeukaryotic diversity was further explored for three samples selected along the surface salinity gradient (freshwater - brackish - marine). Clone libraries revealed a high diversity among heterotrophic and/or small-sized protists which were undetected by microscopy. Among them, a rich variety of Chrysophyceae and other lineages (e.g. novel marine stramenopiles) are reported here for the first time in this transition area. However, conventional microscopy remains more efficient in revealing the high diversity of phototrophic taxa, low in abundances but morphologically distinct, that is overlooked by the molecular approach. The differences between microscopical and molecular analyses and their limitations are discussed here, pointing out the complementarities of both approaches, for a thorough phytoplankton community description.</p>},
	issn = {1932-6203},
	doi = {10.1371/journal.pone.0094110},
	author = {Bazin, Pauline and Fabien Jouenne and Friedl, Thomas and Deton-Cabanillas, Anne-Flore and Bertrand Le Roy and Beno{\^\i}t V{\'e}ron}
}
@article {3370,
	title = {Protecting honey bees: identification of a new varroacide by in silico, in vitro, and in vivo studies.},
	journal = {Parasitol Res},
	volume = {113},
	year = {2014},
	month = {2014 Dec},
	pages = {4601-10},
	abstract = {<p>Varroa destructor is the main concern related to the gradual decline of honeybees. Nowadays, among the various acaricides used in the control of V. destructor, most presents increasing resistance. An interesting alternative could be the identification of existent molecules as new acaricides with no effect on honeybee health. We have previously constructed the first 3D model of AChE for honeybee. By analyzing data concerning amino acid mutations implicated in the resistance associated to pesticides, it appears that pirimicarb should be a good candidate for varroacide. To check this hypothesis, we characterized the AChE gene of V. destructor. In the same way, we proposed a 3D model for the AChE of V. destructor. Starting from the definition of these two 3D models of AChE in honeybee and varroa, a comparison between the gorges of the active site highlighted some major differences and particularly different shapes. Following this result, docking studies have shown that pirimicarb adopts two distinct positions with the strongest intermolecular interactions with VdAChE. This result was confirmed with in vitro and in vivo data for which a clear inhibition of VdAChE by pirimicarb at 10 μM (contrary to HbAChE) and a 100\% mortality of varroa (dose corresponding to the LD50 (contact) for honeybee divided by a factor 100) were observed. These results demonstrate that primicarb could be a new varroacide candidate and reinforce the high relationships between in silico, in vitro, and in vivo data for the design of new selective pesticides.</p>},
	issn = {1432-1955},
	doi = {10.1007/s00436-014-4150-z},
	author = {Dulin, Fabienne and C{\'e}line Zatylny-Gaudin and Ballandonne, C{\'e}line and Guillet, Bertrand and Bonafos, Romain and Bureau, Ronan and Halm, Marie Pierre}
}
@article {3416,
	title = {Relevance of macrozoobenthic grazers to understand the dynamic behaviour of sediment erodibility and microphytobenthos resuspension in sunny summer conditions},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	month = {09/2014},
	pages = {46-55},
	author = {Francis Orvain and Katell Guizien and S{\'e}bastien Lefebvre and Martine Br{\'e}ret and Christine Dupuy}
}
@article {3419,
	title = {Seasonal dynamics of extracellular polymeric substances (EPS) in surface sediments of a diatom-dominated intertidal mudflat (Marennes{\textendash}Ol{\'e}ron, France)},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	month = {09/2014},
	pages = {26-35},
	author = {Guillaume Pierre and Jean-Michel Zhao and Francis Orvain and Christine Dupuy and G{\'e}raldine Klein and Marianne Graber and Thierry Maugard}
}
@article {3994,
	title = {Seasonal Pattern of the Biogeochemical Properties of Mangrove Sediments Receiving Shrimp Farm Effluents (New Caledonia)},
	journal = {Journal of acquaculture research \& development},
	volume = {05},
	year = {2014},
	issn = { 2155-9546},
	author = {Cyril Marchand and Molnar, N and Deborde, J and Patrona, LC and Tarik Meziane}
}
@article {4144,
	title = {Senegalese sole (Solea senegalensis) metamorphic larvae are more sensitive to pseudo-albinism induced by high dietary arachidonic acid levels than post-metamorphic larvae},
	journal = {Aquaculture},
	volume = {433},
	year = {2014},
	pages = {276 - 287},
	abstract = {<p>Abstract High dietary levels of arachidonic acid (ARA) and its relative proportions with eicosapentaenoic acid (EPA), fed during early larval stages, have been associated with malpigmentation in various flatfish species. This study investigated whether the nutritional induction of pigmentary disorders at larval stages was related to a specific larval period of increased sensitivity to \{ARA\} in Senegalese sole (Solea senegalensis Kaup, 1858). Senegalese sole larvae were fed high dietary \{ARA\} levels during pre- and pro-metamorphosis (2{\textendash}15 dph) and/or post-metamorphosis (15{\textendash}50 dph). Larval tissues reflected the dietary fatty acid composition. Malpigmentations were significantly related to elevated dietary and larval \{ARA\} contents and ARA/EPA ratio. This study reports evidence for a {\textquotedblleft}pigmentation window{\textquotedblright}, with a higher larval sensitivity to dietary \{ARA\} during pre- and pro-metamorphosis than post-metamorphosis. High dietary \{ARA\} fed to larvae during pre-metamorphosis enhanced survival, but did not affect growth nor eye migration. The aspect and density of melanophores in the skin of the ocular side of ARA-induced pseudo-albinos were significantly reduced in comparison to normally pigmented individuals, even more in the pseudo-albino fish fed high dietary \{ARA\} levels during the pre-metamorphic stage. Pseudo-albino fish fed high dietary \{ARA\} levels during post-metamorphosis showed higher concentrations of 2- and 3-series prostaglandins (PGE2 and PGE3) than normally pigmented specimens fed the same diets. An increased sensitivity to ARA-induced malpigmentations has been identified at pre-metamorphosis and early metamorphosis in Senegalese sole. Supplying high dietary \{ARA\} amounts imbalanced the dietary ARA/EPA ratio and disrupted the relative concentrations of derived \{PGE2\} and PGE3, resulting in 20 to 81.7\% pseudo-albino individuals, depending on the dietary treatment. The administration of high levels of dietary \{ARA\} at different developmental stages did not only affect the incidence of animals with pigmentary disorders, but it also affect the melanophore density and skin aspect in normally pigmented and pseudoalbino fish as image segmentation and texture analyses indicated.</p>
},
	keywords = {Prostaglandins},
	issn = {0044-8486},
	doi = {http://dx.doi.org/10.1016/j.aquaculture.2014.06.012},
	url = {http://www.sciencedirect.com/science/article/pii/S0044848614003056},
	author = {Boglino, A and Wishkerman, A and Darias, Maria and de la Iglesia, P and Andree, K B and Gisbert, E and Est{\'e}vez, A}
}
@article {3420,
	title = {Sequential resuspension of biofilm components (viruses, prokaryotes and protists) as measured by erodimetry experiments in the Brouage mudflat (French Atlantic coast)},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	month = {09/2014},
	pages = {56-65},
	author = {Christine Dupuy and Clarisse Mallet and Katell Guizien and H{\'e}l{\`e}ne Montani{\'e} and Martine Br{\'e}ret and Fran{\c c}oise Mornet and Camille Fontaine and Caroline N{\'e}rot and Francis Orvain}
}
@article {3430,
	title = {The skeleton of the staghorn coral Acropora millepora: molecular and structural characterization.},
	journal = {PLoS One},
	volume = {9},
	year = {2014},
	month = {2014},
	pages = {e97454},
	abstract = {<p>The scleractinian coral Acropora millepora is one of the most studied species from the Great Barrier Reef. This species has been used to understand evolutionary, immune and developmental processes in cnidarians. It has also been subject of several ecological studies in order to elucidate reef responses to environmental changes such as temperature rise and ocean acidification (OA). In these contexts, several nucleic acid resources were made available. When combined to a recent proteomic analysis of the coral skeletal organic matrix (SOM), they enabled the identification of several skeletal matrix proteins, making A. millepora into an emerging model for biomineralization studies. Here we describe the skeletal microstructure of A. millepora skeleton, together with a functional and biochemical characterization of its occluded SOM that focuses on the protein and saccharidic moieties. The skeletal matrix proteins show a large range of isoelectric points, compositional patterns and signatures. Besides secreted proteins, there are a significant number of proteins with membrane attachment sites such as transmembrane domains and GPI anchors as well as proteins with integrin binding sites. These features show that the skeletal proteins must have strong adhesion properties in order to function in the calcifying space. Moreover this data suggest a molecular connection between the calcifying epithelium and the skeletal tissue during biocalcification. In terms of sugar moieties, the enrichment of the SOM in arabinose is striking, and the monosaccharide composition exhibits the same signature as that of mucus of acroporid corals. Finally, we observe that the interaction of the acetic acid soluble SOM on the morphology of in vitro grown CaCO3 crystals is very pronounced when compared with the calcifying matrices of some mollusks. In light of these results, we wish to commend Acropora millepora as a model for biocalcification studies in scleractinians, from molecular and structural viewpoints.</p>
},
	keywords = {Acetic Acid, Amination, Animals, Anthozoa, Bone and Bones, Calcium Carbonate, Crystallization, Gels, Monosaccharides, Proteins, Solubility, Spectroscopy, Fourier Transform Infrared, Spectrum Analysis, Raman},
	issn = {1932-6203},
	doi = {10.1371/journal.pone.0097454},
	author = {Ramos-Silva, Paula and Kaandorp, Jaap and Herbst, Fr{\'e}d{\'e}ric and Plasseraud, Laurent and Alcaraz, G and Stern, Christine and Corneillat, Marion and Guichard, N and Durlet, Christophe and Gilles Luquet and Marin, F}
}
@article {3417,
	title = {Structures of benthic prokaryotic communities and their hydrolytic enzyme activities resuspended from samples of intertidal mudflats: An experimental approach},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	month = {09/2014},
	pages = {158-169},
	author = {Clarisse Mallet and H{\'e}l{\`e}ne Agogu{\'e} and Fr{\'e}d{\'e}rique Bonnemoy and Katell Guizien and Francis Orvain and Christine Dupuy}
}
@article {4512,
	title = {Temperature modulates the progression of vitellogenesis in the European eel},
	journal = {Aquaculture},
	volume = {434},
	year = {2014},
	pages = {38-47},
	author = {Mazzeo, I and Penaranda, David S and Gallego, Victor and Sylvie Baloche and Nourizadeh-Lillabadi, R and Tveiten, Helge and Sylvie Dufour and Asturiano, Juan F and Weltzien, Finn-Arne and Perez, Luz}
}
@article {3415,
	title = {Tidal and seasonal effects on the short-term temporal patterns of bacteria, microphytobenthos and exopolymers in natural intertidal biofilms (Brouage, France)},
	journal = {Journal of Sea Research},
	volume = {92},
	year = {2014},
	month = {09/2014},
	pages = {6-18},
	author = {Francis Orvain and Margot de Crignis and Katell Guizien and S{\'e}bastien Lefebvre and Clarisse Mallet and Takahashi, E and Christine Dupuy}
}
@article {3398,
	title = {Transcriptomic profiling of gametogenesis in triploid Pacific Oysters Crassostrea gigas: towards an understanding of partial sterility associated with triploidy.},
	journal = {PLoS One},
	volume = {9},
	year = {2014},
	month = {2014},
	pages = {e112094},
	abstract = {<p><strong>BACKGROUND: </strong>Triploidy can occur in many animal species but is often lethal. Among invertebrates, amphibians and fishes, triploids are viable although often sterile or infertile. Most triploids of the Pacific oyster Crassostrea gigas are almost sterile (named "3nβ") yet a low but significant proportion show an advanced gametogenesis (named "3nα"). These oysters thus constitute an interesting model to study the effect of triploidy on germ cell development. We used microarrays to compare the gonad transcriptomes of diploid 2n and the abovementioned triploid 3nβ and 3nα male and female oysters throughout gametogenesis.</p>

<p><strong>RESULTS: </strong>All triploids displayed an upregulation of genes related to DNA repair and apoptosis and a downregulation of genes associated with cell division. The comparison of 3nα and 3nβ transcriptomes with 2n revealed the likely involvement of a cell cycle checkpoint during mitosis in the successful but delayed development of gonads in 3nα individuals. In contrast, a disruption of sex differentiation mechanisms may explain the sterility of 3nβ individuals with 3nβ females expressing male-specific genes and 3nβ males expressing female-specific genes.</p>

<p><strong>CONCLUSIONS: </strong>The disruption of sex differentiation and mitosis may be responsible for the impaired gametogenesis of triploid Pacific oysters. The function of the numerous candidate genes identified in our study should now be studied in detail in order to elucidate their role in sex determination, mitosis/meiosis control, pachytene cell cycle checkpoint, and the control of DNA repair/apoptosis.</p>
},
	issn = {1932-6203},
	doi = {10.1371/journal.pone.0112094},
	author = {Dheilly, Nolwenn M and Jouaux, Aude and Boudry, Pierre and Pascal Favrel and Christophe Lelong}
}
@article {5824,
	title = {{Climatic Facilitation of the Colonization of an Estuary by Acartia tonsa}},
	journal = {PLoS ONE},
	volume = {8},
	year = {2013},
	abstract = {<p>Global change has become a major driving force of both terrestrial and marine systems. Located at the interface between these two realms, estuarine ecosystems are probably the place where both direct and indirect effects of human activities conspire together to affect biodiversity from phytoplankton to top predators. Among European estuarine systems, the Gironde is the largest estuary of Western Europe and many studies have provided evidence that it has been affected by a variety of anthropogenic stressors such as thermal and chemical pollution, physical alterations and exploitation, especially for maritime traffic. In such a context, species introduction is also a current major issue with the establishment of strong competitive species that could lead to ecosystem reorganization with potential decrease or even disappearance of native species. In the Gironde estuary, this hypothesis was proposed for the invasive shrimp species Palaemon macrodactylus as a decrease in the native species abundance was observed at the same time. Although species introduction often takes place via ballast water, the influence of climate-driven changes on the establishment of new species remains a key issue. The calanoid copepod Acartia tonsa, observed in the Gironde estuary for the first time in 1983, have since colonized most part of the estuary, reaching a level of abundance comparable to the dominant native species Eurytemora affinis. In this study, using both the concept of the ecological niche sensu Hutchinson (fundamental and realized niches) and statistical models, we reveal that the dynamics of the colonization of A. tonsa was facilitated by environmental conditions that have become closer to its environmental optimum with respect to temperature and salinity.</p>
},
	issn = {19326203},
	author = {Chaalali, Aur{\'e}lie and Gr{\'e}gory Beaugrand and Virginie Raybaud and Goberville, Eric and David, Val{\'e}rie and Bo{\"e}t, Philippe and Benoit Sautour}
}
@article {5822,
	title = {{Decline in Kelp in West Europe and Climate}},
	journal = {PLoS ONE},
	volume = {8},
	year = {2013},
	abstract = {<p>Kelp ecosystems form widespread underwater forests playing a major role in structuring the biodiversity at a regional scale. Some seaweeds such as Laminaria digitata are also economically important, being exploited for their alginate and iodine content. Although some studies have shown that kelp ecosystems are regressing and that multiple causes are likely to be at the origin of the disappearance of certain populations, the extent to which global climate change may play a role remains speculative. Here we show that many populations of L. digitata along European coasts are on the verge of local extinction due to a climate-caused increase in sea temperature. By modeling the spatial distribution of the seaweed, we evaluate the possible implications of global climate change for the geographical patterns of the species using temperature data from the Coupled Model Intercomparison Project phase 5 (CMIP5). Projections of the future range of L. digitata throughout the 21st century show large shifts in the suitable habitat of the kelp and a northward retreat of the southern limit of its current geographic distribution from France to Danish coasts and the southern regions of the United Kingdom. However, these projections depend on the intensity of warming. A medium to high warming is expected to lead to the extirpation of the species as early as the first half of the 21st century and there is high confidence that regional extinction will spread northwards by the end of this century. These changes are likely to cause the decline of species whose life cycle is closely dependent upon L. digitata and lead to the establishment of new ecosystems with lower ecological and economic values.</p>
},
	issn = {19326203},
	author = {Virginie Raybaud and Gr{\'e}gory Beaugrand and Goberville, Eric and Delebecq, Gaspard and Destombe, Christophe and Valero, Myriam and Dominique Davoult and Morin, Pascal and Gevaert, Francois}
}
@article {7331,
	title = {Highly Dynamic Cellular-Level Response of Symbiotic Coral to a Sudden Increase in Environmental NitrogenABSTRACT},
	journal = {mBio},
	volume = {4},
	year = {2013},
	month = {Jan-07-2013},
	doi = {10.1128/mBio.00052-13},
	url = {https://mbio.asm.org/content/4/3/e00052-13},
	author = {Kopp, C. and Pernice, M. and Domart-Coulon, I. and Djediat, C. and Spangenberg, J. E. and Alexander, D. T. L. and Hignette, M. and Tarik Meziane and Meibom, A.},
	editor = {Orphan, Victoria and McFall-Ngai, Margaret J.}
}
@article {7333,
	title = {Impacts of shrimp farm effluent on water quality, benthic metabolism and~N-dynamics in a mangrove forest (New Caledonia)},
	journal = {Estuarine, Coastal and Shelf Science},
	volume = {117},
	year = {2013},
	month = {Jan-01-2013},
	pages = {12 - 21},
	issn = {02727714},
	doi = {10.1016/j.ecss.2012.07.012},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0272771412002739},
	author = {Molnar, Nathalie and Welsh, David T. and Marchand, Cyril and Deborde, Jonathan and Tarik Meziane}
}
@article {5823,
	title = {{Long-term phenological shifts in raptor migration and climate}},
	journal = {PLoS ONE},
	volume = {8},
	year = {2013},
	abstract = {<p>Climate change is having a discernible effect on many biological and ecological processes. Among observed changes, modifications in bird phenology have been widely documented. However, most studies have interpreted phenological shifts as gradual biological adjustments in response to the alteration of the thermal regime. Here we analysed a long-term dataset (1980-2010) of short-distance migratory raptors in five European regions. We revealed that the responses of these birds to climate-induced changes in autumn temperatures are abrupt and synchronous at a continental scale. We found that when the temperatures increased, birds delayed their mean passage date of autumn migration. Such delay, in addition to an earlier spring migration, suggests that a significant warming may induce an extension of the breeding-area residence time of migratory raptors, which may eventually lead to residency.</p>
},
	author = {Jaffre, Mikael and Gr{\'e}gory Beaugrand and Goberville, Eric and Jiguet, Fr{\'e}d{\'e}ric and Kjell{\'e}n, Nils and Troost, Gerard and Dubois, Philippe J. and Lepr{\^e}tre, Alain and Christophe Luczak}
}
@article {6837,
	title = {Space partitioning without territoriality in gannets},
	journal = {Science},
	volume = {341},
	year = {2013},
	pages = {68{\textendash}70},
	doi = {10.1126/science.1236077 },
	url = {https://science.sciencemag.org/content/341/6141/68},
	author = {Wakefield, Ewan and Bodey, Thomas and Bearhop, Stuart and Blackburn, Jez and Colhoun, Kendrew and Davies, Rachel and Dwyer, Ross and Green, Jonathan and Gr{\'e}millet, David and Clara P{\'e}ron and others}
}
@article {7355,
	title = {New 2-Methyl-13-Icosenoic Acid from the Temperate Calcisponge Leuconia johnstoni},
	journal = {Lipids},
	volume = {47},
	year = {2012},
	month = {Jan-04-2012},
	pages = {345 - 353},
	issn = {0024-4201},
	doi = {10.1007/s11745-011-3631-4},
	url = {http://doi.wiley.com/10.1007/s11745-011-3631-4},
	author = {Qu{\'e}vrain, Elodie and Barnathan, Gilles and Tarik Meziane and Domart-Coulon, Isabelle and Rabesaotra, Vony and Bourguet-Kondracki, Marie-Lise}
}
@proceedings {8578,
	title = {Threats on the wintering grounds of migratory species in West Africa},
	year = {2012},
	month = {2016},
	pages = {224},
	publisher = {Ornithos},
	edition = {Ornithos},
	address = {Ch{\^a}lons-en-Champagne, France},
	issn = {ORNITHOS 1254-2962},
	author = {Chevallier, Damien and Brossault, Paul and Gendre, Nicolas and Baillon, Fran{\c c}ois and Duponnois, Robin and Chapalain, Fr{\'e}d{\'e}ric and Strenna, Luc and Yameogo, Dieudonn{\'e} and Le Maho, Yvon}
}
@article {6840,
	title = {Conserving pelagic habitats: seascape modelling of an oceanic top predator},
	journal = {Journal of applied ecology},
	volume = {48},
	year = {2011},
	pages = {121{\textendash}132},
	doi = {10.1111/j.1365-2664.2010.01910.x},
	url = {https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/j.1365-2664.2010.01910.x},
	author = {Louzao, Maite and Pinaud, David and Clara P{\'e}ron and Delord, K. and Wiegand, Thorsten and WEIMERSKIRCH, Henri}
}
@article {6856,
	title = {Un r{\'e}seau de surveillance des littoraux face au changement climatique en milieu insulaire tropical : l{\textquoteright}exemple de Mayotte},
	journal = {VertigO},
	year = {2011},
	month = {Jul-01-2012},
	doi = {10.4000/vertigo10.4000/vertigo.1047110.4000/vertigo.10512},
	url = {http://vertigo.revues.org},
	author = {Jeanson, Matthieu and Franck Dolique and Anthony, Edward J.}
}
@article {6841,
	title = {At-sea distribution and diet of an endangered top predator: relationship between white-chinned petrels and commercial longline fisheries},
	journal = {Endangered species research},
	volume = {13},
	year = {2010},
	pages = {1{\textendash}16},
	doi = {10.3354/esr00309 },
	url = {https://www.int-res.com/abstracts/esr/v13/n1/p1-16/},
	author = {Delord, K. and C{\'e}dric Cotte and Clara P{\'e}ron and MARTEAU, C{\'e}dric and Patrice Pruvost and Nicolas Gasco and Guy Duhamel and Cherel, Yves and WEIMERSKIRCH, Henri}
}
@article {8593,
	title = {Human activity and the drying up of rivers determine abundance and spatial distribution of Black Storks Ciconia nigra on their wintering grounds},
	journal = {Bird Study},
	volume = {57},
	year = {2010},
	month = {May-08-2012},
	pages = {369 - 380},
	issn = {0006-3657},
	doi = {10.1080/00063651003678467},
	url = {https://www.tandfonline.com/doi/full/10.1080/00063651003678467},
	author = {Chevallier, Damien and Le Maho, Yvon and Baillon, Fran{\c c}ois and Duponnois, Robin and Dieulin, Claudine and Brossault, Paul and De Franclieu, Philippe and Lorge, Patric and Aurouet, Axel and Massemin, Sylvie}
}
@article {8594,
	title = {The Importance of Roosts for Black Storks <i>Ciconia nigra</i>               Wintering in West Africa},
	journal = {Ardea},
	volume = {98},
	year = {2010},
	month = {Jan-03-2010},
	pages = {91 - 96},
	issn = {0373-2266},
	doi = {10.5253/078.098.0111},
	url = {http://www.bioone.org/doi/abs/10.5253/078.098.0111},
	author = {Chevallier, D. and Duponnois, R. and Baillon, F. and Brossault, P. and Gr{\'e}goire, J-M. and Eva, H. and Maho, Y. Le and Massemin, S.}
}
@article {6843,
	title = {Interdecadal changes in at-sea distribution and abundance of subantarctic seabirds along a latitudinal gradient in the Southern Indian Ocean},
	journal = {Global Change Biology},
	volume = {16},
	year = {2010},
	pages = {1895{\textendash}1909},
	doi = {10.1111/j.1365-2486.2010.02169.x},
	url = {https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-2486.2010.02169.x},
	author = {Clara P{\'e}ron and Authier, Matthieu and Barbraud, C. and DELORD, Karine and Besson, Dominique and WEIMERSKIRCH, Henri}
}
@article {6842,
	title = {Seasonal variation in oceanographic habitat and behaviour of white-chinned petrels Procellaria aequinoctialis from Kerguelen Island},
	journal = {Marine Ecology Progress Series},
	volume = {416},
	year = {2010},
	pages = {267{\textendash}284},
	doi = {10.3354/meps08785},
	url = {https://www.int-res.com/abstracts/meps/v416/p267-284/},
	author = {Clara P{\'e}ron and Delord, K. and Phillips, Richard and Charbonnier, Yohan and MARTEAU, C{\'e}dric and Louzao, Maite and WEIMERSKIRCH, Henri}
}
@article {6889,
	title = {Identification and expression of a factor of the DM family in the oyster Crassostrea gigas},
	journal = {Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology},
	volume = {152},
	year = {2009},
	pages = {189-196},
	keywords = {Crassostrea gigas, Dmrt1, Dmrt4, Dmrt5, Oyster, Sex determination},
	doi = {10.1016/j.cbpa.2008.09.019},
	url = {https://hal-normandie-univ.archives-ouvertes.fr/hal-02296545},
	author = {Naimi, Amine and Anne-Sophie Martinez and Specq, Marie-Laure and Mrac, Abdellah and Diss, Blandine and Mathieu, Michel and Sourdaine, Pascal}
}
@article {6891,
	title = {Molecular cloning and gene expression of Cg-Foxl2 during the development and the adult gametogenetic cycle in the oyster Crassostrea gigas},
	journal = {Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology},
	volume = {154},
	year = {2009},
	pages = {134-142},
	keywords = {Adult gametogenetic cycle, Cg-DMl, Crassostrea gigas, Development, Foxl2, Gonad, Oyster, Sex determination},
	doi = {10.1016/j.cbpb.2009.05.011},
	url = {https://hal-normandie-univ.archives-ouvertes.fr/hal-02296548},
	author = {Naimi, Amine and Anne-Sophie Martinez and Specq, Marie-Laure and Diss, Blandine and Mathieu, Michel and Sourdaine, Pascal}
}
@article {7345,
	title = {Oxygen and nutrient dynamics of the upside down jellyfish (Cassiopea sp.) and its influence on benthic nutrient exchanges and primary production},
	journal = {Hydrobiologia},
	volume = {635},
	year = {2009},
	month = {Jan-11-2009},
	pages = {351 - 362},
	issn = {0018-8158},
	doi = {10.1007/s10750-009-9928-0},
	url = {http://link.springer.com/10.1007/s10750-009-9928-0},
	author = {Welsh, David T. and Dunn, Ryan J. K. and Tarik Meziane}
}
@article {7358,
	title = {Fate of mangrove organic matter along a subtropical estuary: small-scale exportation and contribution to the food of crab communities},
	journal = {Marine Ecology Progress Series},
	volume = {312},
	year = {2006},
	month = {Dec-04-2007},
	pages = {15 - 27},
	issn = {0171-8630},
	doi = {10.3354/meps312015},
	url = {http://www.int-res.com/abstracts/meps/v312/p15-27/},
	author = {Tarik Meziane and dAgata, F and Lee, SY}
}
@article {8597,
	title = {Elephants as dispersal agents of mycorrhizal spores in Burkina Faso},
	journal = {African Journal of Ecology},
	volume = {42},
	year = {2004},
	month = {Jan-09-2004},
	pages = {225 - 227},
	issn = {0141-6707},
	doi = {10.1111/aje.2004.42.issue-310.1111/j.1365-2028.2004.00524.x},
	url = {http://www.blackwell-synergy.com/toc/aje/42/3},
	author = {Paugy, M. and Baillon, F. and Chevallier, D. and Duponnois, R.}
}
