Caputo, J.-G., Girardin, V., Knippel, A., Nguyen, M. H., Niquil, N., & Nogues, Q. (2021). Analysis of trophic networks: an optimisation approach. Journal of Mathematical Biology, 83(5). https://doi.org/10.1007/s00285-021-01682-3 (Original work published 2021)

Lassalle, G., Lobry, J., Le Loc’h, F., Mackinson, S., Sanchez, F., Tomczak, M. T., & Niquil, N. (2013). Ecosystem status and functioning: searching for rules of thumb using an intersite comparison of food-web models of Northeast Atlantic continental shelves. Ices Journal of Marine Science, 70, 135–149. https://doi.org/10.1093/icesjms/fss168

Safi, G., Giebels, D., Arroyo, N.-L., Heymans, J., Preciado, I., Raoux, A., … Niquil, N. (2019). Vitamine ENA: A framework for the development of ecosystem-based indicators for decision makers. Ocean and Coastal Management, 174, 116-130. https://doi.org/10.1016/j.ocecoaman.2019.03.005

Raoux, A., Tecchio, S., Pezy, J.-P., Lassalle, G., Degraer, S., Wilhelmsson, D., … Niquil, N. (2017). Benthic and fish aggregation inside an offshore wind farm: Which effects on the trophic web functioning? Ecological indicators, 72, 33-46. https://doi.org/10.1016/j.ecolind.2016.07.037 (Original work published 2017)

Raoux, A., Pezy, J.-P., Ernande, B., Niquil, N., Dauvin, J.-C., & Grangeré, K. (2020). Isotopic analyses, a good tool to validate models in the context of Marine Renewable Energy development and cumulative impacts. Estuarine, Coastal and Shelf Science, 237. https://doi.org/10.1016/j.ecss.2020.106690

Saint-Béat, B., Baird, D., Asmus, H., Asmus, R., Bacher, C., Pacella, S. R., … Niquil, N. (2015). Trophic networks: How do theories link ecosystem structure and functioning to stability properties? A review. Ecological indicators, 52, 458–471.

Niquil, N., Scotti, M., Fofack-Garcia, R., Haraldsson, M., Thermes, M., Raoux, A., … Mazé, C. (2021). The Merits of Loop Analysis for the Qualitative Modeling of Social-Ecological Systems in Presence of Offshore Wind Farms. Frontiers in Ecology and Evolution, 9. https://doi.org/10.3389/fevo.2021.635798 (Original work published 2022)

Lassalle, G., Pasqual, J.-S. N., Boët, P., Rochet, M. J., Trenkel, M. , V, & Niquil, N. (2014). Combining quantitative and qualitative models to identify functional groups for monitoring changes in the Bay of Biscay continental shelf exploited foodweb. ICES Journal of Marine Science, 71, 105–117. https://doi.org/10.1093/icesjms/fst107

Fath, B., Asmus, H., Asmus, R., Baird, D., Borrett, S., de Jonge, V., … Wolff, M. (2019). Ecological network analysis metrics: The need for an entire ecosystem approach in management and policy. Ocean and Coastal Management, 174, 1-14. https://doi.org/10.1016/j.ocecoaman.2019.03.007

Chaalali, A., Beaugrand, G., Raybaud, V., Lassalle, G., Saint-Béat, B., Le Loc’h, F., … Niquil, N. (2016). From species distributions to ecosystem structure and function: A methodological perspective. ECOLOGICAL MODELLING, 334, 78-90. https://doi.org/{10.1016/j.ecolmodel.2016.04.022} (Original work published 2016)